Multiple sequence alignment - TraesCS5A01G105100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G105100 chr5A 100.000 5032 0 0 1 5032 169312251 169307220 0.000000e+00 9293.0
1 TraesCS5A01G105100 chr5A 97.321 112 3 0 2366 2477 505508729 505508840 1.850000e-44 191.0
2 TraesCS5A01G105100 chr5A 96.491 114 4 0 2365 2478 248535439 248535326 6.650000e-44 189.0
3 TraesCS5A01G105100 chr5A 100.000 28 0 0 1160 1187 57874522 57874495 9.000000e-03 52.8
4 TraesCS5A01G105100 chr5B 90.516 1687 82 37 723 2372 147423101 147424746 0.000000e+00 2158.0
5 TraesCS5A01G105100 chr5B 89.558 1379 81 29 2474 3840 147424743 147426070 0.000000e+00 1690.0
6 TraesCS5A01G105100 chr5B 91.334 727 31 10 4336 5032 147426622 147427346 0.000000e+00 965.0
7 TraesCS5A01G105100 chr5B 94.824 483 18 6 3837 4314 147426150 147426630 0.000000e+00 747.0
8 TraesCS5A01G105100 chr5B 89.759 332 34 0 1 332 147168968 147169299 4.660000e-115 425.0
9 TraesCS5A01G105100 chr5D 89.224 1624 123 16 1 1613 135640952 135642534 0.000000e+00 1982.0
10 TraesCS5A01G105100 chr5D 89.928 1380 84 23 2474 3840 135643551 135644888 0.000000e+00 1727.0
11 TraesCS5A01G105100 chr5D 92.587 661 36 6 1608 2265 135642717 135643367 0.000000e+00 937.0
12 TraesCS5A01G105100 chr5D 93.811 307 18 1 3837 4142 135644968 135645274 1.280000e-125 460.0
13 TraesCS5A01G105100 chr5D 92.793 111 7 1 2263 2372 135643444 135643554 5.210000e-35 159.0
14 TraesCS5A01G105100 chrUn 99.083 109 1 0 2368 2476 218481598 218481706 3.970000e-46 196.0
15 TraesCS5A01G105100 chrUn 89.610 154 16 0 583 736 316839831 316839984 3.970000e-46 196.0
16 TraesCS5A01G105100 chr3A 98.198 111 2 0 2369 2479 59517193 59517083 1.430000e-45 195.0
17 TraesCS5A01G105100 chr3A 99.065 107 1 0 2370 2476 651627757 651627863 5.140000e-45 193.0
18 TraesCS5A01G105100 chr3A 91.473 129 9 2 2349 2476 24798078 24798205 5.180000e-40 176.0
19 TraesCS5A01G105100 chr3A 86.325 117 15 1 1980 2095 653339242 653339358 5.290000e-25 126.0
20 TraesCS5A01G105100 chr6D 98.165 109 2 0 2368 2476 103085340 103085448 1.850000e-44 191.0
21 TraesCS5A01G105100 chr6D 86.916 107 13 1 1982 2088 445336106 445336001 8.850000e-23 119.0
22 TraesCS5A01G105100 chr4A 97.297 111 3 0 2369 2479 327750636 327750526 6.650000e-44 189.0
23 TraesCS5A01G105100 chr7A 94.262 122 7 0 2355 2476 246269539 246269660 2.390000e-43 187.0
24 TraesCS5A01G105100 chr7A 100.000 28 0 0 1160 1187 164564750 164564723 9.000000e-03 52.8
25 TraesCS5A01G105100 chr7A 100.000 28 0 0 1160 1187 233686795 233686768 9.000000e-03 52.8
26 TraesCS5A01G105100 chr3D 88.034 117 13 1 1980 2095 517757981 517758097 2.440000e-28 137.0
27 TraesCS5A01G105100 chr2D 86.667 120 15 1 1981 2099 446315934 446315815 1.140000e-26 132.0
28 TraesCS5A01G105100 chr2A 86.207 116 15 1 1974 2088 430952040 430951925 1.900000e-24 124.0
29 TraesCS5A01G105100 chr2A 100.000 28 0 0 1160 1187 180615676 180615703 9.000000e-03 52.8
30 TraesCS5A01G105100 chr2B 87.037 108 12 1 1980 2085 308667894 308667787 2.460000e-23 121.0
31 TraesCS5A01G105100 chr4D 86.364 110 11 4 1981 2087 133481753 133481861 3.180000e-22 117.0
32 TraesCS5A01G105100 chr6A 100.000 28 0 0 1160 1187 502486773 502486800 9.000000e-03 52.8
33 TraesCS5A01G105100 chr1A 100.000 28 0 0 1160 1187 407661069 407661042 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G105100 chr5A 169307220 169312251 5031 True 9293 9293 100.0000 1 5032 1 chr5A.!!$R2 5031
1 TraesCS5A01G105100 chr5B 147423101 147427346 4245 False 1390 2158 91.5580 723 5032 4 chr5B.!!$F2 4309
2 TraesCS5A01G105100 chr5D 135640952 135645274 4322 False 1053 1982 91.6686 1 4142 5 chr5D.!!$F1 4141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.526211 TCGACCATGTCAGAACCGAG 59.474 55.0 0.00 0.00 32.09 4.63 F
1487 1531 0.035915 TCCATCGGCGTGGATTTTGA 60.036 50.0 21.66 4.72 43.20 2.69 F
2105 2341 0.034477 AAACTAACAGCCCCCATCGG 60.034 55.0 0.00 0.00 0.00 4.18 F
2315 2632 0.036875 ACTACAAGGCTGGCACTTCC 59.963 55.0 3.38 0.00 0.00 3.46 F
2379 2696 0.105039 GCAATCTGGTACTCCCTCCG 59.895 60.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1855 0.733909 GTTCCGCATCCTGCTTTTGC 60.734 55.000 0.00 0.00 42.25 3.68 R
2364 2681 0.324091 GGAACGGAGGGAGTACCAGA 60.324 60.000 0.00 0.00 43.89 3.86 R
3908 4327 0.537188 TCTTGTTCTCGGGATCCTGC 59.463 55.000 16.48 2.20 0.00 4.85 R
3986 4405 3.136260 GGAGCCCAGAGATCTCAAGAAAT 59.864 47.826 24.39 5.84 0.00 2.17 R
4218 4638 4.277423 ACTTAAACACAAAGGATGAACGGG 59.723 41.667 0.00 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.711375 TCTAGGGCGGATATGAGGAGT 59.289 52.381 0.00 0.00 0.00 3.85
46 47 3.426615 GGATATGAGGAGTCTCGACCAT 58.573 50.000 0.00 0.39 42.79 3.55
48 49 2.151502 ATGAGGAGTCTCGACCATGT 57.848 50.000 0.00 0.00 42.79 3.21
58 59 0.526211 TCGACCATGTCAGAACCGAG 59.474 55.000 0.00 0.00 32.09 4.63
59 60 0.526211 CGACCATGTCAGAACCGAGA 59.474 55.000 0.00 0.00 32.09 4.04
77 78 1.229529 AGGTCGGACCCACCTCAAT 60.230 57.895 23.21 0.00 40.54 2.57
88 89 2.158842 CCCACCTCAATTTGCACCAAAA 60.159 45.455 0.00 0.00 36.90 2.44
96 97 6.360844 TCAATTTGCACCAAAATGACAAAG 57.639 33.333 4.77 0.00 38.03 2.77
97 98 5.879223 TCAATTTGCACCAAAATGACAAAGT 59.121 32.000 4.77 0.00 38.03 2.66
99 100 3.077229 TGCACCAAAATGACAAAGTCG 57.923 42.857 0.00 0.00 34.95 4.18
100 101 2.425312 TGCACCAAAATGACAAAGTCGT 59.575 40.909 0.00 0.00 34.95 4.34
122 124 1.133976 CAAATCCATCGCCCTCCTCTT 60.134 52.381 0.00 0.00 0.00 2.85
125 127 2.586245 CATCGCCCTCCTCTTGCA 59.414 61.111 0.00 0.00 0.00 4.08
127 129 0.883814 CATCGCCCTCCTCTTGCATC 60.884 60.000 0.00 0.00 0.00 3.91
128 130 2.049627 ATCGCCCTCCTCTTGCATCC 62.050 60.000 0.00 0.00 0.00 3.51
141 143 2.818751 TGCATCCGTCCCCTATTTTT 57.181 45.000 0.00 0.00 0.00 1.94
143 145 1.602377 GCATCCGTCCCCTATTTTTCG 59.398 52.381 0.00 0.00 0.00 3.46
147 149 2.038820 TCCGTCCCCTATTTTTCGTGTT 59.961 45.455 0.00 0.00 0.00 3.32
150 152 2.417586 GTCCCCTATTTTTCGTGTTCGG 59.582 50.000 0.00 0.00 37.69 4.30
153 155 2.417586 CCCTATTTTTCGTGTTCGGGTC 59.582 50.000 0.00 0.00 37.69 4.46
190 192 2.034124 TCCGGTAGATTTCGGGTAAGG 58.966 52.381 0.00 0.00 45.69 2.69
194 196 1.134228 TAGATTTCGGGTAAGGGGGC 58.866 55.000 0.00 0.00 0.00 5.80
214 216 4.080526 GGGCTTGAACTAAGGGTATTGAGA 60.081 45.833 0.00 0.00 36.87 3.27
246 248 0.594602 GGGCACGAGTTTTTACCCAC 59.405 55.000 0.00 0.00 37.30 4.61
247 249 1.310904 GGCACGAGTTTTTACCCACA 58.689 50.000 0.00 0.00 0.00 4.17
252 254 3.495377 CACGAGTTTTTACCCACATTCGA 59.505 43.478 0.00 0.00 0.00 3.71
257 259 3.695830 TTTTACCCACATTCGAGCTCT 57.304 42.857 12.85 0.00 0.00 4.09
258 260 2.961526 TTACCCACATTCGAGCTCTC 57.038 50.000 12.85 0.00 0.00 3.20
260 262 1.144936 CCCACATTCGAGCTCTCCC 59.855 63.158 12.85 0.00 0.00 4.30
263 265 1.379977 ACATTCGAGCTCTCCCGGA 60.380 57.895 12.85 0.00 0.00 5.14
272 274 3.243907 CGAGCTCTCCCGGAAGATAAAAT 60.244 47.826 12.85 0.00 0.00 1.82
274 276 3.060602 GCTCTCCCGGAAGATAAAATCG 58.939 50.000 0.73 0.00 0.00 3.34
283 285 4.440103 CGGAAGATAAAATCGTACGTCCTG 59.560 45.833 16.05 4.58 39.71 3.86
299 301 3.317150 GTCCTGCTTGTGTTTTATTGCC 58.683 45.455 0.00 0.00 0.00 4.52
304 306 5.016051 TGCTTGTGTTTTATTGCCTTTGA 57.984 34.783 0.00 0.00 0.00 2.69
305 307 5.423015 TGCTTGTGTTTTATTGCCTTTGAA 58.577 33.333 0.00 0.00 0.00 2.69
310 312 6.767456 TGTGTTTTATTGCCTTTGAATGGAT 58.233 32.000 0.70 0.00 0.00 3.41
321 323 7.925993 TGCCTTTGAATGGATTATAAAGTACG 58.074 34.615 0.70 0.00 0.00 3.67
339 341 2.496111 ACGGATGATCTACCTCGAGAC 58.504 52.381 15.71 0.00 0.00 3.36
340 342 1.807742 CGGATGATCTACCTCGAGACC 59.192 57.143 15.71 2.34 0.00 3.85
341 343 2.810767 CGGATGATCTACCTCGAGACCA 60.811 54.545 15.71 2.60 0.00 4.02
343 345 3.442273 GGATGATCTACCTCGAGACCATC 59.558 52.174 15.71 14.80 0.00 3.51
346 348 5.242795 TGATCTACCTCGAGACCATCATA 57.757 43.478 15.71 0.00 0.00 2.15
348 350 6.958767 TGATCTACCTCGAGACCATCATATA 58.041 40.000 15.71 0.00 0.00 0.86
361 363 6.320164 AGACCATCATATATTCTCTACGAGCC 59.680 42.308 0.00 0.00 0.00 4.70
364 366 6.773200 CCATCATATATTCTCTACGAGCCCTA 59.227 42.308 0.00 0.00 0.00 3.53
366 368 6.959904 TCATATATTCTCTACGAGCCCTACT 58.040 40.000 0.00 0.00 0.00 2.57
372 374 1.562942 TCTACGAGCCCTACTCCTTGA 59.437 52.381 0.00 0.00 43.01 3.02
386 388 8.979534 CCCTACTCCTTGATTTATATAGGTACC 58.020 40.741 2.73 2.73 0.00 3.34
387 389 9.543231 CCTACTCCTTGATTTATATAGGTACCA 57.457 37.037 15.94 0.00 0.00 3.25
393 395 8.101419 CCTTGATTTATATAGGTACCAAGGGTC 58.899 40.741 15.94 2.46 43.24 4.46
398 400 1.095130 TAGGTACCAAGGGTCAGGGA 58.905 55.000 15.94 0.00 37.09 4.20
403 405 2.286935 ACCAAGGGTCAGGGATACAT 57.713 50.000 0.00 0.00 39.74 2.29
412 414 3.305471 GGTCAGGGATACATCTAAGTCGC 60.305 52.174 0.00 0.00 39.74 5.19
422 424 9.069082 GGATACATCTAAGTCGCCTATGTATAT 57.931 37.037 0.00 0.00 41.47 0.86
474 476 8.635877 AATCATCTTGAAGTATACGACAAGTC 57.364 34.615 27.32 11.22 40.07 3.01
494 497 4.068599 GTCTTTGGGGAGTCTTCTTTCAG 58.931 47.826 0.00 0.00 0.00 3.02
510 513 0.694771 TCAGACTCCATTGGCTGCTT 59.305 50.000 0.00 0.00 0.00 3.91
515 518 1.340405 ACTCCATTGGCTGCTTTCGAT 60.340 47.619 0.00 0.00 0.00 3.59
519 522 0.813184 ATTGGCTGCTTTCGATGTGG 59.187 50.000 0.00 0.00 0.00 4.17
520 523 0.537143 TTGGCTGCTTTCGATGTGGT 60.537 50.000 0.00 0.00 0.00 4.16
527 530 1.608025 GCTTTCGATGTGGTCCACTGA 60.608 52.381 22.56 14.43 35.11 3.41
545 548 2.170607 CTGATAAACCGACATGGGGTCT 59.829 50.000 10.71 0.62 44.68 3.85
554 557 1.131303 ACATGGGGTCTTTGGTCCGA 61.131 55.000 0.00 0.00 0.00 4.55
562 565 1.302511 CTTTGGTCCGACCCACCAG 60.303 63.158 15.24 2.00 44.89 4.00
585 588 1.352156 GGGCGATGACGTGTTGAGAC 61.352 60.000 0.00 0.00 41.98 3.36
593 596 2.557056 TGACGTGTTGAGACTTCCCTAG 59.443 50.000 0.00 0.00 0.00 3.02
617 620 0.981183 AACACCGTCAATAGCCCTGA 59.019 50.000 0.00 0.00 0.00 3.86
618 621 0.981183 ACACCGTCAATAGCCCTGAA 59.019 50.000 0.00 0.00 0.00 3.02
634 637 2.224305 CCTGAACCGGTCTTCAAGTCTT 60.224 50.000 8.04 0.00 29.66 3.01
635 638 2.802816 CTGAACCGGTCTTCAAGTCTTG 59.197 50.000 8.04 6.21 29.66 3.02
636 639 2.143925 GAACCGGTCTTCAAGTCTTGG 58.856 52.381 8.04 0.00 0.00 3.61
641 644 1.604278 GGTCTTCAAGTCTTGGCACAC 59.396 52.381 12.66 4.89 39.29 3.82
652 655 2.036256 GGCACACCTCAGCCCATT 59.964 61.111 0.00 0.00 45.18 3.16
655 658 0.895100 GCACACCTCAGCCCATTCAA 60.895 55.000 0.00 0.00 0.00 2.69
662 665 2.629617 CCTCAGCCCATTCAAACTGTTT 59.370 45.455 0.00 0.00 0.00 2.83
732 735 3.511146 TCGGAGACAACCTATAAAACGGT 59.489 43.478 0.00 0.00 34.27 4.83
736 739 4.934075 GACAACCTATAAAACGGTGGTC 57.066 45.455 0.62 0.62 44.51 4.02
876 879 3.770040 CCCATCCGACGGCTGACA 61.770 66.667 19.00 0.00 0.00 3.58
1402 1405 9.369904 CCTTGATGTTTAATTCCATTTTAGTGG 57.630 33.333 0.00 0.00 40.76 4.00
1466 1510 3.853671 GCCTGCAACTTCGATGTTATTTG 59.146 43.478 15.47 6.45 0.00 2.32
1467 1511 4.615912 GCCTGCAACTTCGATGTTATTTGT 60.616 41.667 15.47 0.00 0.00 2.83
1468 1512 5.460646 CCTGCAACTTCGATGTTATTTGTT 58.539 37.500 15.47 0.00 0.00 2.83
1469 1513 5.569059 CCTGCAACTTCGATGTTATTTGTTC 59.431 40.000 15.47 2.17 0.00 3.18
1470 1514 5.457140 TGCAACTTCGATGTTATTTGTTCC 58.543 37.500 15.47 0.40 0.00 3.62
1471 1515 5.009110 TGCAACTTCGATGTTATTTGTTCCA 59.991 36.000 15.47 2.52 0.00 3.53
1472 1516 6.092748 GCAACTTCGATGTTATTTGTTCCAT 58.907 36.000 15.47 0.00 0.00 3.41
1473 1517 6.251376 GCAACTTCGATGTTATTTGTTCCATC 59.749 38.462 15.47 0.00 0.00 3.51
1477 1521 3.617669 GATGTTATTTGTTCCATCGGCG 58.382 45.455 0.00 0.00 0.00 6.46
1478 1522 2.428491 TGTTATTTGTTCCATCGGCGT 58.572 42.857 6.85 0.00 0.00 5.68
1479 1523 2.160615 TGTTATTTGTTCCATCGGCGTG 59.839 45.455 6.85 4.55 0.00 5.34
1480 1524 1.374560 TATTTGTTCCATCGGCGTGG 58.625 50.000 18.41 18.41 40.76 4.94
1481 1525 0.322098 ATTTGTTCCATCGGCGTGGA 60.322 50.000 21.66 21.66 46.28 4.02
1486 1530 2.476772 TCCATCGGCGTGGATTTTG 58.523 52.632 21.66 5.02 43.20 2.44
1487 1531 0.035915 TCCATCGGCGTGGATTTTGA 60.036 50.000 21.66 4.72 43.20 2.69
1488 1532 1.024271 CCATCGGCGTGGATTTTGAT 58.976 50.000 19.35 0.00 42.02 2.57
1489 1533 2.158885 TCCATCGGCGTGGATTTTGATA 60.159 45.455 21.66 3.54 43.20 2.15
1490 1534 2.616376 CCATCGGCGTGGATTTTGATAA 59.384 45.455 19.35 0.00 42.02 1.75
1491 1535 3.253188 CCATCGGCGTGGATTTTGATAAT 59.747 43.478 19.35 0.00 42.02 1.28
1492 1536 4.261572 CCATCGGCGTGGATTTTGATAATT 60.262 41.667 19.35 0.00 42.02 1.40
1588 1633 4.192317 GGTTGGATTTGTAGCCTCAGTAG 58.808 47.826 0.00 0.00 0.00 2.57
1595 1640 5.477607 TTTGTAGCCTCAGTAGTTTGCTA 57.522 39.130 0.00 0.00 33.63 3.49
1672 1907 8.988060 TGTCTATGGTCAAGTGAATAATAGGAA 58.012 33.333 0.00 0.00 0.00 3.36
1782 2017 2.899976 CGGGAAATTTGGGGTATTTGC 58.100 47.619 0.00 0.00 33.96 3.68
1840 2075 6.628844 GCACTGAATTTGGGAATAAGCTCATT 60.629 38.462 0.00 0.00 0.00 2.57
1878 2113 0.451783 CCAGCGCCCTTGTGTAAATC 59.548 55.000 2.29 0.00 0.00 2.17
1953 2188 5.104444 TGTGGTCAGGGTTTAAACTTGACTA 60.104 40.000 31.63 28.14 40.23 2.59
1979 2214 5.132144 GGAAGTTACTCATTCCCCATCCTAA 59.868 44.000 0.00 0.00 39.29 2.69
2055 2291 0.835276 AGCATGATGAGCAGCACCTA 59.165 50.000 0.00 0.00 0.00 3.08
2074 2310 4.464597 ACCTAGCCTATGCATAGCTAAGAC 59.535 45.833 25.60 11.26 41.13 3.01
2096 2332 2.731217 CACACAGCCAAAACTAACAGC 58.269 47.619 0.00 0.00 0.00 4.40
2097 2333 1.681264 ACACAGCCAAAACTAACAGCC 59.319 47.619 0.00 0.00 0.00 4.85
2098 2334 1.000274 CACAGCCAAAACTAACAGCCC 60.000 52.381 0.00 0.00 0.00 5.19
2099 2335 0.603065 CAGCCAAAACTAACAGCCCC 59.397 55.000 0.00 0.00 0.00 5.80
2100 2336 0.541998 AGCCAAAACTAACAGCCCCC 60.542 55.000 0.00 0.00 0.00 5.40
2101 2337 0.830023 GCCAAAACTAACAGCCCCCA 60.830 55.000 0.00 0.00 0.00 4.96
2102 2338 1.937191 CCAAAACTAACAGCCCCCAT 58.063 50.000 0.00 0.00 0.00 4.00
2103 2339 1.824852 CCAAAACTAACAGCCCCCATC 59.175 52.381 0.00 0.00 0.00 3.51
2104 2340 1.472480 CAAAACTAACAGCCCCCATCG 59.528 52.381 0.00 0.00 0.00 3.84
2105 2341 0.034477 AAACTAACAGCCCCCATCGG 60.034 55.000 0.00 0.00 0.00 4.18
2126 2362 2.972713 GCCCATCCTAATGACCAGAGTA 59.027 50.000 0.00 0.00 34.61 2.59
2277 2594 3.662759 TGGAAAGAGGTTCAAAGGTGT 57.337 42.857 0.00 0.00 38.06 4.16
2315 2632 0.036875 ACTACAAGGCTGGCACTTCC 59.963 55.000 3.38 0.00 0.00 3.46
2323 2640 1.856265 GCTGGCACTTCCCTTTCGTG 61.856 60.000 0.00 0.00 0.00 4.35
2359 2676 5.011090 TGCTAAGGATTACTAGTGCACAG 57.989 43.478 21.04 16.16 0.00 3.66
2375 2692 3.788672 CAGGCAATCTGGTACTCCC 57.211 57.895 0.00 0.00 39.76 4.30
2376 2693 1.207791 CAGGCAATCTGGTACTCCCT 58.792 55.000 0.00 0.00 39.76 4.20
2377 2694 1.139853 CAGGCAATCTGGTACTCCCTC 59.860 57.143 0.00 0.00 39.76 4.30
2378 2695 0.470341 GGCAATCTGGTACTCCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
2379 2696 0.105039 GCAATCTGGTACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
2380 2697 1.486211 CAATCTGGTACTCCCTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
2381 2698 1.831736 CAATCTGGTACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
2382 2699 1.777941 ATCTGGTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
2383 2700 0.324091 TCTGGTACTCCCTCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
2384 2701 1.664321 CTGGTACTCCCTCCGTTCCG 61.664 65.000 0.00 0.00 0.00 4.30
2385 2702 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
2386 2703 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
2387 2704 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2388 2705 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2389 2706 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2390 2707 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2391 2708 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2392 2709 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2394 2711 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
2395 2712 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
2396 2713 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
2397 2714 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
2398 2715 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
2399 2716 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
2400 2717 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
2401 2718 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
2402 2719 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
2403 2720 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
2404 2721 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
2405 2722 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
2406 2723 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2407 2724 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2408 2725 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2409 2726 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2410 2727 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2411 2728 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2412 2729 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2413 2730 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2414 2731 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2415 2732 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2416 2733 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2417 2734 6.393990 GTCGCAGAAATGGATGTATCTAGAT 58.606 40.000 10.73 10.73 39.69 1.98
2418 2735 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
2419 2736 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
2420 2737 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
2421 2738 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
2422 2739 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
2451 2768 9.953697 AGTTCTAGATACATTCATTTCTACGAC 57.046 33.333 0.00 0.00 0.00 4.34
2452 2769 8.893884 GTTCTAGATACATTCATTTCTACGACG 58.106 37.037 0.00 0.00 0.00 5.12
2453 2770 8.374327 TCTAGATACATTCATTTCTACGACGA 57.626 34.615 0.00 0.00 0.00 4.20
2454 2771 8.496751 TCTAGATACATTCATTTCTACGACGAG 58.503 37.037 0.00 0.00 0.00 4.18
2455 2772 7.028926 AGATACATTCATTTCTACGACGAGT 57.971 36.000 0.00 0.00 0.00 4.18
2456 2773 8.151141 AGATACATTCATTTCTACGACGAGTA 57.849 34.615 0.00 0.00 0.00 2.59
2457 2774 8.618677 AGATACATTCATTTCTACGACGAGTAA 58.381 33.333 0.00 0.00 34.45 2.24
2458 2775 9.395707 GATACATTCATTTCTACGACGAGTAAT 57.604 33.333 0.00 0.00 34.45 1.89
2459 2776 9.745880 ATACATTCATTTCTACGACGAGTAATT 57.254 29.630 0.00 0.00 34.45 1.40
2460 2777 8.475331 ACATTCATTTCTACGACGAGTAATTT 57.525 30.769 0.00 0.00 34.45 1.82
2461 2778 8.380644 ACATTCATTTCTACGACGAGTAATTTG 58.619 33.333 0.00 2.12 34.45 2.32
2462 2779 6.880822 TCATTTCTACGACGAGTAATTTGG 57.119 37.500 0.00 0.00 34.45 3.28
2463 2780 6.623486 TCATTTCTACGACGAGTAATTTGGA 58.377 36.000 0.00 0.00 34.45 3.53
2464 2781 7.092079 TCATTTCTACGACGAGTAATTTGGAA 58.908 34.615 0.00 0.00 34.45 3.53
2465 2782 6.695292 TTTCTACGACGAGTAATTTGGAAC 57.305 37.500 0.00 0.00 34.45 3.62
2466 2783 4.406069 TCTACGACGAGTAATTTGGAACG 58.594 43.478 0.00 0.00 34.45 3.95
2467 2784 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
2468 2785 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2469 2786 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2470 2787 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2471 2788 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2472 2789 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2526 2843 8.801299 TGAGGTCTAAAATTTGAAATATGCACA 58.199 29.630 0.00 0.00 0.00 4.57
2577 2896 7.274250 CACCTGCAGCAAGATTATTAAAGAAAC 59.726 37.037 8.66 0.00 0.00 2.78
2578 2897 7.039784 ACCTGCAGCAAGATTATTAAAGAAACA 60.040 33.333 8.66 0.00 0.00 2.83
2643 2962 1.133325 ACATTGCCCCACTTGGTTACA 60.133 47.619 0.00 0.00 0.00 2.41
2670 2989 2.418884 GGCCTGACTACTAAGCACCTTC 60.419 54.545 0.00 0.00 0.00 3.46
2694 3013 2.099921 CGTAGGTAGCTCAGTTGCAGAT 59.900 50.000 0.00 0.00 34.99 2.90
2717 3036 0.607489 ATGCTTGTGACTGGGCACTC 60.607 55.000 8.11 0.00 39.49 3.51
2719 3038 2.280797 TTGTGACTGGGCACTCGC 60.281 61.111 8.11 0.00 39.49 5.03
2741 3061 4.728882 GCTTGTGCCGAAATATCTGTGAAG 60.729 45.833 0.00 0.00 0.00 3.02
2752 3072 7.706607 CGAAATATCTGTGAAGTTCTCATACCA 59.293 37.037 8.01 0.00 36.14 3.25
2787 3107 6.598064 CCCGTAATAAGGACAGAAAAATGAGT 59.402 38.462 0.00 0.00 0.00 3.41
2823 3145 7.979444 TTGGAAACTAGTGATAACAGAAAGG 57.021 36.000 0.00 0.00 0.00 3.11
2978 3300 5.717178 AGAGTGCTAGTAGAGAATTTCCACA 59.283 40.000 0.00 0.00 0.00 4.17
3017 3339 6.747280 CGTATTTCTTGCCAATCTTGTAAAGG 59.253 38.462 0.00 0.00 46.24 3.11
3215 3545 4.599041 ACCACAAGCCAAAGATGCTATTA 58.401 39.130 0.00 0.00 38.34 0.98
3242 3572 2.413837 ACGTGCTTACTGAACATCCAC 58.586 47.619 0.00 0.00 0.00 4.02
3281 3611 4.038271 TCTGATGTGGCCTTCAATCTTT 57.962 40.909 3.32 0.00 0.00 2.52
3290 3620 9.822185 ATGTGGCCTTCAATCTTTTATAATTTC 57.178 29.630 3.32 0.00 0.00 2.17
3342 3673 8.511321 CAGTTGCCATTGTTCTTGTAACTATTA 58.489 33.333 0.00 0.00 0.00 0.98
3356 3687 9.298774 CTTGTAACTATTAGTGTACTTACCTGC 57.701 37.037 0.00 0.00 0.00 4.85
3370 3701 0.330604 ACCTGCTGTGGATGCATTCT 59.669 50.000 6.53 0.00 39.86 2.40
3374 3705 0.394762 GCTGTGGATGCATTCTGGGA 60.395 55.000 6.53 0.00 0.00 4.37
3437 3768 7.402071 TGTCCCTGGATTATCTGTTAGTTACTT 59.598 37.037 0.00 0.00 0.00 2.24
3438 3769 8.921205 GTCCCTGGATTATCTGTTAGTTACTTA 58.079 37.037 0.00 0.00 0.00 2.24
3484 3816 2.631428 CCACCGTTGTGCGTTCAG 59.369 61.111 0.00 0.00 41.35 3.02
3505 3837 4.513318 CAGTCTTCCAGGTTCTTTCTTGAC 59.487 45.833 0.00 0.00 0.00 3.18
3513 3845 4.823989 CAGGTTCTTTCTTGACCAGTTCAT 59.176 41.667 0.00 0.00 32.84 2.57
3516 3848 4.021102 TCTTTCTTGACCAGTTCATCCC 57.979 45.455 0.00 0.00 32.84 3.85
3525 3857 1.339438 CCAGTTCATCCCCACTCACAG 60.339 57.143 0.00 0.00 0.00 3.66
3529 3861 4.080919 CAGTTCATCCCCACTCACAGATTA 60.081 45.833 0.00 0.00 0.00 1.75
3541 3873 7.147724 CCCACTCACAGATTACCTAGTTCATAA 60.148 40.741 0.00 0.00 0.00 1.90
3581 3913 9.219603 GATCCAAATGCTGCTTATGTATTACTA 57.780 33.333 0.00 0.00 0.00 1.82
3582 3914 8.378172 TCCAAATGCTGCTTATGTATTACTAC 57.622 34.615 0.00 0.00 0.00 2.73
3583 3915 8.210946 TCCAAATGCTGCTTATGTATTACTACT 58.789 33.333 0.00 0.00 0.00 2.57
3692 4026 6.769512 TGTATTGTCCCATAGAAGATAAGCC 58.230 40.000 0.00 0.00 0.00 4.35
3696 4030 4.345257 TGTCCCATAGAAGATAAGCCAGTC 59.655 45.833 0.00 0.00 0.00 3.51
3702 4036 7.166851 CCATAGAAGATAAGCCAGTCATTGAT 58.833 38.462 0.00 0.00 0.00 2.57
3705 4039 7.951347 AGAAGATAAGCCAGTCATTGATTTT 57.049 32.000 0.00 0.00 0.00 1.82
3707 4041 9.466497 AGAAGATAAGCCAGTCATTGATTTTTA 57.534 29.630 0.00 0.00 0.00 1.52
3762 4096 8.867935 CATGTTCATTGTTCAGTAAGAGACTAG 58.132 37.037 0.00 0.00 35.64 2.57
3799 4133 4.525912 AGAAATTGGCTGCCACTAAAAG 57.474 40.909 23.30 0.00 30.78 2.27
3800 4134 3.259123 AGAAATTGGCTGCCACTAAAAGG 59.741 43.478 23.30 0.00 30.78 3.11
3801 4135 2.603075 ATTGGCTGCCACTAAAAGGA 57.397 45.000 23.30 4.07 30.78 3.36
3802 4136 1.909700 TTGGCTGCCACTAAAAGGAG 58.090 50.000 23.30 0.00 30.78 3.69
3848 4265 7.602644 TGTCATAGTTCTAGTTAACCTTGCAAG 59.397 37.037 19.93 19.93 0.00 4.01
3864 4281 4.503741 TGCAAGCAATACCTTCTGTTTC 57.496 40.909 0.00 0.00 0.00 2.78
3869 4286 6.183360 GCAAGCAATACCTTCTGTTTCCATAT 60.183 38.462 0.00 0.00 0.00 1.78
3871 4288 8.562892 CAAGCAATACCTTCTGTTTCCATATAG 58.437 37.037 0.00 0.00 0.00 1.31
3877 4294 6.485171 ACCTTCTGTTTCCATATAGCAGTTT 58.515 36.000 0.00 0.00 0.00 2.66
3908 4327 8.077991 TCTTCTGAATCTATGTGTTTTTGCAAG 58.922 33.333 0.00 0.00 0.00 4.01
3968 4387 7.162082 ACGAGAAACTGAAGAAGATATTTGGT 58.838 34.615 0.00 0.00 0.00 3.67
3977 4396 2.332063 AGATATTTGGTGGGCGTGAG 57.668 50.000 0.00 0.00 0.00 3.51
4016 4435 0.341258 TCTCTGGGCTCCTCAATCCT 59.659 55.000 0.00 0.00 0.00 3.24
4030 4449 7.211897 TCCTCAATCCTCATTTCCAGAAATA 57.788 36.000 5.34 0.00 38.84 1.40
4201 4621 1.341080 ATGGTCTGCTGGTTTTTGGG 58.659 50.000 0.00 0.00 0.00 4.12
4218 4638 8.027189 GGTTTTTGGGTTGTGATTAGTTATCTC 58.973 37.037 0.00 0.00 34.17 2.75
4239 4659 4.462133 TCCCGTTCATCCTTTGTGTTTAA 58.538 39.130 0.00 0.00 0.00 1.52
4294 4714 4.406649 GGTGGATCATCACATTTTCCCATT 59.593 41.667 4.76 0.00 39.27 3.16
4299 4719 7.000472 GGATCATCACATTTTCCCATTCTCTA 59.000 38.462 0.00 0.00 0.00 2.43
4305 4725 8.324191 TCACATTTTCCCATTCTCTATAGTCT 57.676 34.615 0.00 0.00 0.00 3.24
4306 4726 9.434275 TCACATTTTCCCATTCTCTATAGTCTA 57.566 33.333 0.00 0.00 0.00 2.59
4404 4824 3.956199 CAATTCTGCATGATAACCAGGGT 59.044 43.478 0.00 0.00 0.00 4.34
4473 4893 1.986698 AATGATTGCGCTGCTGAAAC 58.013 45.000 9.73 0.00 0.00 2.78
4490 4910 0.804989 AACTGTCGGCTAGCATTTGC 59.195 50.000 18.24 2.17 42.49 3.68
4516 4936 6.481313 TGCTCTATGATTGTATCTGAAACTGC 59.519 38.462 0.00 0.00 0.00 4.40
4533 4953 0.539518 TGCGCTTTGGCAGGATAGTA 59.460 50.000 9.73 0.00 38.17 1.82
4534 4954 1.065782 TGCGCTTTGGCAGGATAGTAA 60.066 47.619 9.73 0.00 38.17 2.24
4565 4985 4.655762 ACATATTTCTCTGTGCGAGCTA 57.344 40.909 0.00 0.00 39.70 3.32
4583 5003 3.950395 AGCTACAAATTCAGATCAAGCCC 59.050 43.478 0.00 0.00 0.00 5.19
4584 5004 3.696051 GCTACAAATTCAGATCAAGCCCA 59.304 43.478 0.00 0.00 0.00 5.36
4613 5033 2.086054 ATTCTGTGCTTCAGGTCGAC 57.914 50.000 7.13 7.13 43.76 4.20
4617 5037 3.666253 TGCTTCAGGTCGACGCGA 61.666 61.111 15.93 5.41 41.70 5.87
4635 5055 1.635663 GAACCGCCCGTCACATTCTG 61.636 60.000 0.00 0.00 0.00 3.02
4657 5077 1.963515 AGTTGGTTGATGCCTTTGACC 59.036 47.619 0.00 0.00 0.00 4.02
4665 5085 0.537143 ATGCCTTTGACCGTTGCTCA 60.537 50.000 0.00 0.00 0.00 4.26
4676 5096 1.308069 CGTTGCTCACCCCATTCTGG 61.308 60.000 0.00 0.00 37.25 3.86
4678 5098 0.038166 TTGCTCACCCCATTCTGGAC 59.962 55.000 0.00 0.00 40.96 4.02
4723 5143 2.691771 GGAGTGCTCGCTCGACAGA 61.692 63.158 4.58 0.00 36.41 3.41
4770 5190 0.250467 GTGCTCCTCAACAGCTTCCA 60.250 55.000 0.00 0.00 37.79 3.53
4778 5198 3.197766 CCTCAACAGCTTCCATGGTACTA 59.802 47.826 12.58 0.00 0.00 1.82
4782 5202 6.245408 TCAACAGCTTCCATGGTACTAAAAT 58.755 36.000 12.58 0.00 0.00 1.82
4857 5277 2.484889 CCGCTCTACTTTTCCATAGGC 58.515 52.381 0.00 0.00 0.00 3.93
4859 5279 3.385577 CGCTCTACTTTTCCATAGGCTC 58.614 50.000 0.00 0.00 0.00 4.70
4891 5311 8.786826 TTGGACAACTCACCTATAATTAACAG 57.213 34.615 0.00 0.00 0.00 3.16
4924 5357 5.393569 CCTCTCTACCATGTACTCACAACAG 60.394 48.000 0.00 0.00 38.42 3.16
4928 5361 6.398095 TCTACCATGTACTCACAACAGATTG 58.602 40.000 0.00 0.00 38.42 2.67
4971 5418 4.705023 TCGTTGATCATCTCCAGACAGTAA 59.295 41.667 0.00 0.00 0.00 2.24
4997 5444 3.127030 GGGAAATCATCTGTCGTTGGAAC 59.873 47.826 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.222567 ATCCGCCCTAGATTTTGGGT 58.777 50.000 4.70 0.00 45.06 4.51
16 17 2.313342 ACTCCTCATATCCGCCCTAGAT 59.687 50.000 0.00 0.00 0.00 1.98
24 25 1.807742 GGTCGAGACTCCTCATATCCG 59.192 57.143 3.09 0.00 39.39 4.18
37 38 0.526211 CGGTTCTGACATGGTCGAGA 59.474 55.000 0.00 0.00 34.95 4.04
46 47 2.254471 CGACCTCTCGGTTCTGACA 58.746 57.895 0.00 0.00 45.73 3.58
62 63 0.608035 GCAAATTGAGGTGGGTCCGA 60.608 55.000 0.00 0.00 41.99 4.55
77 78 3.862267 CGACTTTGTCATTTTGGTGCAAA 59.138 39.130 0.00 0.00 32.09 3.68
88 89 3.750371 TGGATTTGGACGACTTTGTCAT 58.250 40.909 0.00 0.00 40.72 3.06
96 97 1.436983 GGGCGATGGATTTGGACGAC 61.437 60.000 0.00 0.00 0.00 4.34
97 98 1.153249 GGGCGATGGATTTGGACGA 60.153 57.895 0.00 0.00 0.00 4.20
99 100 0.819666 GGAGGGCGATGGATTTGGAC 60.820 60.000 0.00 0.00 0.00 4.02
100 101 0.988145 AGGAGGGCGATGGATTTGGA 60.988 55.000 0.00 0.00 0.00 3.53
122 124 2.650322 GAAAAATAGGGGACGGATGCA 58.350 47.619 0.00 0.00 0.00 3.96
125 127 2.237893 ACACGAAAAATAGGGGACGGAT 59.762 45.455 0.00 0.00 0.00 4.18
127 129 2.103537 ACACGAAAAATAGGGGACGG 57.896 50.000 0.00 0.00 0.00 4.79
128 130 2.093152 CGAACACGAAAAATAGGGGACG 59.907 50.000 0.00 0.00 0.00 4.79
141 143 1.893335 TCAGACGACCCGAACACGA 60.893 57.895 0.00 0.00 0.00 4.35
143 145 0.663568 CTGTCAGACGACCCGAACAC 60.664 60.000 0.00 0.00 41.85 3.32
147 149 2.333417 GCTCTGTCAGACGACCCGA 61.333 63.158 0.00 0.00 41.85 5.14
150 152 3.440228 GATTTAGCTCTGTCAGACGACC 58.560 50.000 0.00 0.00 41.85 4.79
153 155 2.455032 CGGATTTAGCTCTGTCAGACG 58.545 52.381 0.00 0.00 0.00 4.18
180 182 1.135068 TTCAAGCCCCCTTACCCGAA 61.135 55.000 0.00 0.00 0.00 4.30
182 184 1.378119 GTTCAAGCCCCCTTACCCG 60.378 63.158 0.00 0.00 0.00 5.28
185 187 2.356844 CCCTTAGTTCAAGCCCCCTTAC 60.357 54.545 0.00 0.00 32.41 2.34
187 189 0.704664 CCCTTAGTTCAAGCCCCCTT 59.295 55.000 0.00 0.00 32.41 3.95
190 192 3.053917 TCAATACCCTTAGTTCAAGCCCC 60.054 47.826 0.00 0.00 32.41 5.80
194 196 5.962433 TCGTCTCAATACCCTTAGTTCAAG 58.038 41.667 0.00 0.00 0.00 3.02
214 216 0.672401 CGTGCCCTTGTTACCATCGT 60.672 55.000 0.00 0.00 0.00 3.73
226 228 0.475044 TGGGTAAAAACTCGTGCCCT 59.525 50.000 0.00 0.00 37.09 5.19
229 231 3.561503 GAATGTGGGTAAAAACTCGTGC 58.438 45.455 0.00 0.00 0.00 5.34
231 233 3.731089 TCGAATGTGGGTAAAAACTCGT 58.269 40.909 0.00 0.00 0.00 4.18
233 235 3.751698 AGCTCGAATGTGGGTAAAAACTC 59.248 43.478 0.00 0.00 0.00 3.01
246 248 0.249238 CTTCCGGGAGAGCTCGAATG 60.249 60.000 2.45 0.00 41.67 2.67
247 249 0.395862 TCTTCCGGGAGAGCTCGAAT 60.396 55.000 8.93 0.00 41.67 3.34
252 254 3.243907 CGATTTTATCTTCCGGGAGAGCT 60.244 47.826 19.55 4.67 0.00 4.09
257 259 3.381272 ACGTACGATTTTATCTTCCGGGA 59.619 43.478 24.41 0.00 0.00 5.14
258 260 3.709987 ACGTACGATTTTATCTTCCGGG 58.290 45.455 24.41 0.00 0.00 5.73
260 262 4.440103 CAGGACGTACGATTTTATCTTCCG 59.560 45.833 24.41 7.57 0.00 4.30
263 265 5.007385 AGCAGGACGTACGATTTTATCTT 57.993 39.130 24.41 0.67 0.00 2.40
272 274 0.386476 AACACAAGCAGGACGTACGA 59.614 50.000 24.41 0.00 0.00 3.43
274 276 5.144359 CAATAAAACACAAGCAGGACGTAC 58.856 41.667 0.00 0.00 0.00 3.67
283 285 5.982465 TTCAAAGGCAATAAAACACAAGC 57.018 34.783 0.00 0.00 0.00 4.01
310 312 7.879677 TCGAGGTAGATCATCCGTACTTTATAA 59.120 37.037 0.00 0.00 0.00 0.98
321 323 2.865079 TGGTCTCGAGGTAGATCATCC 58.135 52.381 13.56 0.00 31.60 3.51
361 363 9.543231 TGGTACCTATATAAATCAAGGAGTAGG 57.457 37.037 14.36 0.00 34.91 3.18
372 374 6.504279 CCCTGACCCTTGGTACCTATATAAAT 59.496 42.308 14.36 0.00 35.25 1.40
386 388 4.656112 ACTTAGATGTATCCCTGACCCTTG 59.344 45.833 0.00 0.00 0.00 3.61
387 389 4.897051 ACTTAGATGTATCCCTGACCCTT 58.103 43.478 0.00 0.00 0.00 3.95
393 395 2.894126 AGGCGACTTAGATGTATCCCTG 59.106 50.000 0.00 0.00 37.44 4.45
452 454 8.376203 CAAAGACTTGTCGTATACTTCAAGATG 58.624 37.037 27.63 19.99 39.39 2.90
459 461 4.529377 TCCCCAAAGACTTGTCGTATACTT 59.471 41.667 0.56 0.00 0.00 2.24
464 466 2.298163 GACTCCCCAAAGACTTGTCGTA 59.702 50.000 0.00 0.00 0.00 3.43
474 476 4.357918 TCTGAAAGAAGACTCCCCAAAG 57.642 45.455 0.00 0.00 42.31 2.77
494 497 0.449388 CGAAAGCAGCCAATGGAGTC 59.551 55.000 2.05 0.00 0.00 3.36
502 505 0.955428 GACCACATCGAAAGCAGCCA 60.955 55.000 0.00 0.00 0.00 4.75
510 513 4.250464 GTTTATCAGTGGACCACATCGAA 58.750 43.478 26.30 11.91 36.74 3.71
515 518 1.972075 TCGGTTTATCAGTGGACCACA 59.028 47.619 26.30 7.28 36.74 4.17
519 522 2.936498 CCATGTCGGTTTATCAGTGGAC 59.064 50.000 0.00 0.00 0.00 4.02
520 523 2.093181 CCCATGTCGGTTTATCAGTGGA 60.093 50.000 0.00 0.00 0.00 4.02
545 548 1.766864 TCTGGTGGGTCGGACCAAA 60.767 57.895 27.32 13.11 43.02 3.28
562 565 3.927163 AACACGTCATCGCCCGGTC 62.927 63.158 0.00 0.00 41.18 4.79
569 572 1.986378 GGAAGTCTCAACACGTCATCG 59.014 52.381 0.00 0.00 43.34 3.84
585 588 1.815003 ACGGTGTTACGACTAGGGAAG 59.185 52.381 0.00 0.00 37.61 3.46
593 596 1.922545 GGCTATTGACGGTGTTACGAC 59.077 52.381 0.00 0.00 37.61 4.34
596 599 2.093869 TCAGGGCTATTGACGGTGTTAC 60.094 50.000 0.00 0.00 0.00 2.50
597 600 2.181125 TCAGGGCTATTGACGGTGTTA 58.819 47.619 0.00 0.00 0.00 2.41
598 601 0.981183 TCAGGGCTATTGACGGTGTT 59.019 50.000 0.00 0.00 0.00 3.32
602 605 0.810031 CGGTTCAGGGCTATTGACGG 60.810 60.000 0.00 0.00 0.00 4.79
617 620 1.814248 GCCAAGACTTGAAGACCGGTT 60.814 52.381 16.99 0.00 0.00 4.44
618 621 0.250338 GCCAAGACTTGAAGACCGGT 60.250 55.000 16.99 6.92 0.00 5.28
636 639 0.895100 TTGAATGGGCTGAGGTGTGC 60.895 55.000 0.00 0.00 0.00 4.57
641 644 1.915141 ACAGTTTGAATGGGCTGAGG 58.085 50.000 0.00 0.00 33.57 3.86
662 665 2.101917 AGAACGACGACCCAAGAGAAAA 59.898 45.455 0.00 0.00 0.00 2.29
665 668 1.000607 CAAGAACGACGACCCAAGAGA 60.001 52.381 0.00 0.00 0.00 3.10
732 735 4.072131 GGAGAGCAAATTACACAAGACCA 58.928 43.478 0.00 0.00 0.00 4.02
1352 1355 1.006639 GAGAGAGGAGAAGGGAGTGGT 59.993 57.143 0.00 0.00 0.00 4.16
1469 1513 1.024271 ATCAAAATCCACGCCGATGG 58.976 50.000 0.00 0.00 41.57 3.51
1470 1514 3.961477 TTATCAAAATCCACGCCGATG 57.039 42.857 0.00 0.00 0.00 3.84
1471 1515 6.435428 GTTAATTATCAAAATCCACGCCGAT 58.565 36.000 0.00 0.00 0.00 4.18
1472 1516 5.502706 CGTTAATTATCAAAATCCACGCCGA 60.503 40.000 0.00 0.00 0.00 5.54
1473 1517 4.668837 CGTTAATTATCAAAATCCACGCCG 59.331 41.667 0.00 0.00 0.00 6.46
1474 1518 4.973663 CCGTTAATTATCAAAATCCACGCC 59.026 41.667 0.00 0.00 0.00 5.68
1475 1519 5.575019 ACCGTTAATTATCAAAATCCACGC 58.425 37.500 0.00 0.00 0.00 5.34
1476 1520 8.339714 ACATACCGTTAATTATCAAAATCCACG 58.660 33.333 0.00 0.00 0.00 4.94
1484 1528 9.397280 TCCATGAAACATACCGTTAATTATCAA 57.603 29.630 0.00 0.00 36.59 2.57
1485 1529 8.966069 TCCATGAAACATACCGTTAATTATCA 57.034 30.769 0.00 0.00 36.59 2.15
1486 1530 9.052759 ACTCCATGAAACATACCGTTAATTATC 57.947 33.333 0.00 0.00 36.59 1.75
1487 1531 8.836413 CACTCCATGAAACATACCGTTAATTAT 58.164 33.333 0.00 0.00 36.59 1.28
1488 1532 7.201661 GCACTCCATGAAACATACCGTTAATTA 60.202 37.037 0.00 0.00 36.59 1.40
1489 1533 6.404293 GCACTCCATGAAACATACCGTTAATT 60.404 38.462 0.00 0.00 36.59 1.40
1490 1534 5.065988 GCACTCCATGAAACATACCGTTAAT 59.934 40.000 0.00 0.00 36.59 1.40
1491 1535 4.393680 GCACTCCATGAAACATACCGTTAA 59.606 41.667 0.00 0.00 36.59 2.01
1492 1536 3.936453 GCACTCCATGAAACATACCGTTA 59.064 43.478 0.00 0.00 36.59 3.18
1620 1855 0.733909 GTTCCGCATCCTGCTTTTGC 60.734 55.000 0.00 0.00 42.25 3.68
1621 1856 0.883833 AGTTCCGCATCCTGCTTTTG 59.116 50.000 0.00 0.00 42.25 2.44
1672 1907 2.936032 GACCCTCACCCAAGCCCT 60.936 66.667 0.00 0.00 0.00 5.19
1782 2017 5.414454 TCATCCCTAAATCGAACAAAACAGG 59.586 40.000 0.00 0.00 0.00 4.00
1840 2075 1.609580 GGCCAACGACATAACCAGACA 60.610 52.381 0.00 0.00 0.00 3.41
1953 2188 4.141158 GGATGGGGAATGAGTAACTTCCAT 60.141 45.833 3.93 0.00 42.29 3.41
2055 2291 2.353208 GCGTCTTAGCTATGCATAGGCT 60.353 50.000 30.14 26.87 41.91 4.58
2074 2310 1.064803 TGTTAGTTTTGGCTGTGTGCG 59.935 47.619 0.00 0.00 44.05 5.34
2097 2333 1.500783 ATTAGGATGGGCCGATGGGG 61.501 60.000 4.37 0.00 43.43 4.96
2098 2334 0.322816 CATTAGGATGGGCCGATGGG 60.323 60.000 4.37 0.00 43.43 4.00
2099 2335 0.692476 TCATTAGGATGGGCCGATGG 59.308 55.000 4.37 0.00 43.43 3.51
2100 2336 1.611673 GGTCATTAGGATGGGCCGATG 60.612 57.143 4.37 0.00 43.43 3.84
2101 2337 0.693049 GGTCATTAGGATGGGCCGAT 59.307 55.000 0.00 0.00 43.43 4.18
2102 2338 0.692756 TGGTCATTAGGATGGGCCGA 60.693 55.000 0.00 0.00 43.43 5.54
2103 2339 0.250467 CTGGTCATTAGGATGGGCCG 60.250 60.000 0.00 0.00 43.43 6.13
2104 2340 1.072965 CTCTGGTCATTAGGATGGGCC 59.927 57.143 0.00 0.00 33.93 5.80
2105 2341 1.771255 ACTCTGGTCATTAGGATGGGC 59.229 52.381 0.00 0.00 33.93 5.36
2175 2412 8.725405 ATTCAAACTAAATTTTTGGGTTTCGT 57.275 26.923 0.00 0.00 35.12 3.85
2176 2413 9.995957 AAATTCAAACTAAATTTTTGGGTTTCG 57.004 25.926 0.00 0.90 33.62 3.46
2181 2418 9.119418 AGGACAAATTCAAACTAAATTTTTGGG 57.881 29.630 0.00 0.00 34.84 4.12
2182 2419 9.934190 CAGGACAAATTCAAACTAAATTTTTGG 57.066 29.630 0.00 0.00 34.84 3.28
2192 2430 7.823745 AATACAGACAGGACAAATTCAAACT 57.176 32.000 0.00 0.00 0.00 2.66
2277 2594 7.739498 TGTAGTTCGCATACATATCAGAGTA 57.261 36.000 0.00 0.00 0.00 2.59
2315 2632 6.073222 AGCAGTTTCTATGTAAACACGAAAGG 60.073 38.462 8.72 6.73 40.97 3.11
2359 2676 0.470341 GGAGGGAGTACCAGATTGCC 59.530 60.000 0.00 0.00 43.89 4.52
2363 2680 1.688627 GGAACGGAGGGAGTACCAGAT 60.689 57.143 0.00 0.00 43.89 2.90
2364 2681 0.324091 GGAACGGAGGGAGTACCAGA 60.324 60.000 0.00 0.00 43.89 3.86
2365 2682 2.200052 GGAACGGAGGGAGTACCAG 58.800 63.158 0.00 0.00 43.89 4.00
2366 2683 4.447734 GGAACGGAGGGAGTACCA 57.552 61.111 0.00 0.00 43.89 3.25
2384 2701 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
2385 2702 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2386 2703 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2387 2704 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2388 2705 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2389 2706 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2390 2707 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2391 2708 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2392 2709 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2393 2710 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2394 2711 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
2395 2712 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
2396 2713 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
2425 2742 9.953697 GTCGTAGAAATGAATGTATCTAGAACT 57.046 33.333 0.00 0.00 39.69 3.01
2426 2743 8.893884 CGTCGTAGAAATGAATGTATCTAGAAC 58.106 37.037 0.00 0.00 39.69 3.01
2427 2744 8.833493 TCGTCGTAGAAATGAATGTATCTAGAA 58.167 33.333 0.00 0.00 39.69 2.10
2428 2745 8.374327 TCGTCGTAGAAATGAATGTATCTAGA 57.626 34.615 0.00 0.00 39.69 2.43
2429 2746 8.283992 ACTCGTCGTAGAAATGAATGTATCTAG 58.716 37.037 0.00 0.00 39.69 2.43
2430 2747 8.151141 ACTCGTCGTAGAAATGAATGTATCTA 57.849 34.615 0.00 0.00 39.69 1.98
2431 2748 7.028926 ACTCGTCGTAGAAATGAATGTATCT 57.971 36.000 0.00 0.00 39.69 1.98
2432 2749 8.778141 TTACTCGTCGTAGAAATGAATGTATC 57.222 34.615 0.00 0.00 39.69 2.24
2433 2750 9.745880 AATTACTCGTCGTAGAAATGAATGTAT 57.254 29.630 0.00 0.00 39.69 2.29
2434 2751 9.577110 AAATTACTCGTCGTAGAAATGAATGTA 57.423 29.630 0.00 0.00 39.69 2.29
2435 2752 8.380644 CAAATTACTCGTCGTAGAAATGAATGT 58.619 33.333 0.00 0.00 39.69 2.71
2436 2753 7.846107 CCAAATTACTCGTCGTAGAAATGAATG 59.154 37.037 0.00 0.00 39.69 2.67
2437 2754 7.762615 TCCAAATTACTCGTCGTAGAAATGAAT 59.237 33.333 0.00 0.00 39.69 2.57
2438 2755 7.092079 TCCAAATTACTCGTCGTAGAAATGAA 58.908 34.615 0.00 0.00 39.69 2.57
2439 2756 6.623486 TCCAAATTACTCGTCGTAGAAATGA 58.377 36.000 0.00 0.00 39.69 2.57
2440 2757 6.880822 TCCAAATTACTCGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
2441 2758 6.034256 CGTTCCAAATTACTCGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
2442 2759 5.343058 CGTTCCAAATTACTCGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
2443 2760 4.853196 CGTTCCAAATTACTCGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
2444 2761 4.406069 CGTTCCAAATTACTCGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
2445 2762 3.545078 CCGTTCCAAATTACTCGTCGTAG 59.455 47.826 0.00 0.00 0.00 3.51
2446 2763 3.190327 TCCGTTCCAAATTACTCGTCGTA 59.810 43.478 0.00 0.00 0.00 3.43
2447 2764 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2448 2765 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2449 2766 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2450 2767 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2451 2768 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2452 2769 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2453 2770 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2454 2771 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2455 2772 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
2456 2773 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
2457 2774 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2458 2775 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2459 2776 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
2460 2777 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
2461 2778 1.409427 CTCATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
2462 2779 2.376109 TCTCATGTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
2463 2780 2.526888 TCTCATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
2464 2781 2.526888 TTCTCATGTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
2465 2782 4.262079 GGTATTTCTCATGTACTCCCTCCG 60.262 50.000 0.00 0.00 0.00 4.63
2466 2783 4.040584 GGGTATTTCTCATGTACTCCCTCC 59.959 50.000 0.00 0.00 0.00 4.30
2467 2784 4.654262 TGGGTATTTCTCATGTACTCCCTC 59.346 45.833 0.00 0.00 34.14 4.30
2468 2785 4.409247 GTGGGTATTTCTCATGTACTCCCT 59.591 45.833 0.00 0.00 34.14 4.20
2469 2786 4.704965 GTGGGTATTTCTCATGTACTCCC 58.295 47.826 0.00 0.00 0.00 4.30
2470 2787 4.369182 CGTGGGTATTTCTCATGTACTCC 58.631 47.826 0.00 0.00 0.00 3.85
2471 2788 4.142004 ACCGTGGGTATTTCTCATGTACTC 60.142 45.833 0.00 0.00 32.11 2.59
2472 2789 3.773119 ACCGTGGGTATTTCTCATGTACT 59.227 43.478 0.00 0.00 32.11 2.73
2526 2843 5.001237 TGCATGAAATCGATTTTCTGCAT 57.999 34.783 34.03 25.35 44.36 3.96
2577 2896 3.194116 CACAGGTTCCTCATTTTGGGATG 59.806 47.826 0.00 0.00 0.00 3.51
2578 2897 3.434309 CACAGGTTCCTCATTTTGGGAT 58.566 45.455 0.00 0.00 0.00 3.85
2643 2962 5.246429 GGTGCTTAGTAGTCAGGCCTATAAT 59.754 44.000 3.98 0.47 0.00 1.28
2670 2989 1.736032 GCAACTGAGCTACCTACGTGG 60.736 57.143 0.00 0.00 42.93 4.94
2694 3013 0.677731 GCCCAGTCACAAGCATGCTA 60.678 55.000 23.00 1.23 0.00 3.49
2717 3036 1.665679 ACAGATATTTCGGCACAAGCG 59.334 47.619 0.00 0.00 43.41 4.68
2719 3038 4.393062 ACTTCACAGATATTTCGGCACAAG 59.607 41.667 0.00 0.00 0.00 3.16
2727 3046 8.948631 TGGTATGAGAACTTCACAGATATTTC 57.051 34.615 0.00 0.00 38.99 2.17
2741 3061 8.217131 ACGGGTAAAAATAATGGTATGAGAAC 57.783 34.615 0.00 0.00 0.00 3.01
2769 3089 5.221561 TGACCGACTCATTTTTCTGTCCTTA 60.222 40.000 0.00 0.00 0.00 2.69
2777 3097 6.801862 CCAAAGTAATGACCGACTCATTTTTC 59.198 38.462 11.97 5.82 45.89 2.29
2787 3107 5.929992 CACTAGTTTCCAAAGTAATGACCGA 59.070 40.000 0.00 0.00 0.00 4.69
2842 3164 4.982295 GTGTCCCTTTATTTTGCAACAGAC 59.018 41.667 0.00 0.00 0.00 3.51
2856 3178 8.258708 GTCTGTATGATAAAGTAGTGTCCCTTT 58.741 37.037 0.00 0.00 35.25 3.11
2953 3275 6.890268 TGTGGAAATTCTCTACTAGCACTCTA 59.110 38.462 0.00 0.00 36.51 2.43
2962 3284 8.157476 ACAGTAATGTTGTGGAAATTCTCTACT 58.843 33.333 0.00 0.00 36.51 2.57
2968 3290 7.148306 ACGGATACAGTAATGTTGTGGAAATTC 60.148 37.037 0.00 0.00 0.00 2.17
2978 3300 7.012044 GGCAAGAAATACGGATACAGTAATGTT 59.988 37.037 0.00 0.00 0.00 2.71
3119 3441 7.959689 ATAATGATTCATACAGCACTGAGAC 57.040 36.000 4.31 0.00 0.00 3.36
3215 3545 2.864343 GTTCAGTAAGCACGTTCACAGT 59.136 45.455 0.00 0.00 0.00 3.55
3242 3572 8.651588 CACATCAGAACTTAAAGTTACTAGCAG 58.348 37.037 0.00 0.00 38.80 4.24
3312 3643 2.886523 CAAGAACAATGGCAACTGAGGA 59.113 45.455 6.92 0.00 37.61 3.71
3342 3673 2.605257 TCCACAGCAGGTAAGTACACT 58.395 47.619 0.00 0.00 0.00 3.55
3356 3687 1.211212 TCTCCCAGAATGCATCCACAG 59.789 52.381 0.00 0.00 31.97 3.66
3370 3701 1.067295 AACATGCAGGTCTTCTCCCA 58.933 50.000 3.65 0.00 0.00 4.37
3374 3705 6.951971 AGAATAACTAACATGCAGGTCTTCT 58.048 36.000 3.65 4.30 0.00 2.85
3465 3797 4.322385 GAACGCACAACGGTGGCC 62.322 66.667 4.97 0.00 46.28 5.36
3484 3816 3.815962 GGTCAAGAAAGAACCTGGAAGAC 59.184 47.826 0.00 0.00 34.07 3.01
3505 3837 0.692476 TGTGAGTGGGGATGAACTGG 59.308 55.000 0.00 0.00 0.00 4.00
3513 3845 2.642171 AGGTAATCTGTGAGTGGGGA 57.358 50.000 0.00 0.00 0.00 4.81
3516 3848 5.661056 TGAACTAGGTAATCTGTGAGTGG 57.339 43.478 0.00 0.00 0.00 4.00
3529 3861 9.847224 CCAAATAGGTAATGTTATGAACTAGGT 57.153 33.333 0.00 0.00 0.00 3.08
3581 3913 6.239289 CCACATTTCAATCCACAAAGGTAAGT 60.239 38.462 0.00 0.00 39.02 2.24
3582 3914 6.158598 CCACATTTCAATCCACAAAGGTAAG 58.841 40.000 0.00 0.00 39.02 2.34
3583 3915 5.600484 ACCACATTTCAATCCACAAAGGTAA 59.400 36.000 0.00 0.00 39.02 2.85
3737 4071 8.807118 TCTAGTCTCTTACTGAACAATGAACAT 58.193 33.333 0.00 0.00 39.39 2.71
3799 4133 9.262358 GACAACCAATTATCTTAGTATGTCTCC 57.738 37.037 0.00 0.00 32.78 3.71
3800 4134 9.817809 TGACAACCAATTATCTTAGTATGTCTC 57.182 33.333 0.00 0.00 35.64 3.36
3821 4155 7.446769 TGCAAGGTTAACTAGAACTATGACAA 58.553 34.615 5.42 0.00 0.00 3.18
3883 4302 7.148853 GCTTGCAAAAACACATAGATTCAGAAG 60.149 37.037 0.00 0.00 0.00 2.85
3908 4327 0.537188 TCTTGTTCTCGGGATCCTGC 59.463 55.000 16.48 2.20 0.00 4.85
3977 4396 3.686726 AGATCTCAAGAAATCCAACACGC 59.313 43.478 0.00 0.00 0.00 5.34
3986 4405 3.136260 GGAGCCCAGAGATCTCAAGAAAT 59.864 47.826 24.39 5.84 0.00 2.17
4030 4449 9.632638 AAGTGCAACATCTACATAAATCCTATT 57.367 29.630 0.00 0.00 41.43 1.73
4201 4621 6.103997 TGAACGGGAGATAACTAATCACAAC 58.896 40.000 0.00 0.00 37.03 3.32
4218 4638 4.277423 ACTTAAACACAAAGGATGAACGGG 59.723 41.667 0.00 0.00 0.00 5.28
4239 4659 7.289549 GGTCTAATATGGTAGGTTAACAGGACT 59.710 40.741 8.10 0.00 0.00 3.85
4404 4824 3.502123 CCTTAAGGTCCTTGTTGGTGA 57.498 47.619 14.84 0.00 37.07 4.02
4490 4910 7.307278 GCAGTTTCAGATACAATCATAGAGCAG 60.307 40.741 0.00 0.00 0.00 4.24
4516 4936 2.354821 GGTTTACTATCCTGCCAAAGCG 59.645 50.000 0.00 0.00 44.31 4.68
4533 4953 6.149474 CACAGAGAAATATGTTCCTTCGGTTT 59.851 38.462 0.00 0.00 0.00 3.27
4534 4954 5.643777 CACAGAGAAATATGTTCCTTCGGTT 59.356 40.000 0.00 0.00 0.00 4.44
4553 4973 2.995939 CTGAATTTGTAGCTCGCACAGA 59.004 45.455 0.00 0.00 0.00 3.41
4554 4974 2.995939 TCTGAATTTGTAGCTCGCACAG 59.004 45.455 0.00 0.00 0.00 3.66
4555 4975 3.038788 TCTGAATTTGTAGCTCGCACA 57.961 42.857 0.00 0.00 0.00 4.57
4556 4976 3.618594 TGATCTGAATTTGTAGCTCGCAC 59.381 43.478 0.00 0.00 0.00 5.34
4557 4977 3.860641 TGATCTGAATTTGTAGCTCGCA 58.139 40.909 0.00 0.00 0.00 5.10
4565 4985 3.094572 CCTGGGCTTGATCTGAATTTGT 58.905 45.455 0.00 0.00 0.00 2.83
4583 5003 3.891422 AGCACAGAATTCTCTCTCCTG 57.109 47.619 4.57 0.00 0.00 3.86
4584 5004 3.837146 TGAAGCACAGAATTCTCTCTCCT 59.163 43.478 4.57 0.00 0.00 3.69
4617 5037 1.671054 CAGAATGTGACGGGCGGTT 60.671 57.895 0.00 0.00 0.00 4.44
4623 5043 2.494059 ACCAACTTCAGAATGTGACGG 58.506 47.619 0.00 0.00 37.40 4.79
4635 5055 3.552890 GGTCAAAGGCATCAACCAACTTC 60.553 47.826 0.00 0.00 0.00 3.01
4657 5077 2.174334 CAGAATGGGGTGAGCAACG 58.826 57.895 0.00 0.00 0.00 4.10
4676 5096 0.966875 TTGCCAGCCATCCACATGTC 60.967 55.000 0.00 0.00 0.00 3.06
4678 5098 1.252215 TGTTGCCAGCCATCCACATG 61.252 55.000 0.00 0.00 0.00 3.21
4723 5143 1.004080 AGCATGTGAAGCAGCTCGT 60.004 52.632 0.00 0.00 30.05 4.18
4770 5190 7.961326 AAGCAGGATTTGATTTTAGTACCAT 57.039 32.000 0.00 0.00 29.32 3.55
4778 5198 5.163519 CCATCCGTAAGCAGGATTTGATTTT 60.164 40.000 0.00 0.00 45.59 1.82
4782 5202 2.238646 ACCATCCGTAAGCAGGATTTGA 59.761 45.455 0.00 0.00 45.59 2.69
4857 5277 0.861837 GAGTTGTCCAAGTGCACGAG 59.138 55.000 12.01 7.92 0.00 4.18
4859 5279 0.304705 GTGAGTTGTCCAAGTGCACG 59.695 55.000 12.01 0.00 0.00 5.34
4891 5311 4.833390 ACATGGTAGAGAGGTTTGTTAGC 58.167 43.478 0.00 0.00 0.00 3.09
4924 5357 2.880890 AGTGGCAACTTCACAGTCAATC 59.119 45.455 0.00 0.00 37.58 2.67
4928 5361 1.953559 TGAGTGGCAACTTCACAGTC 58.046 50.000 0.00 0.00 36.52 3.51
4971 5418 4.119862 CAACGACAGATGATTTCCCGTAT 58.880 43.478 0.00 0.00 0.00 3.06
4997 5444 9.907576 CAAGCAAAGTAAATCTCTAGAATAACG 57.092 33.333 0.00 0.00 0.00 3.18
5009 5459 4.519540 TTGAGCCCAAGCAAAGTAAATC 57.480 40.909 0.00 0.00 43.56 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.