Multiple sequence alignment - TraesCS5A01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G104800 chr5A 100.000 4591 0 0 1 4591 169184173 169188763 0.000000e+00 8479.0
1 TraesCS5A01G104800 chr5B 95.108 2555 84 15 741 3277 147471669 147469138 0.000000e+00 3988.0
2 TraesCS5A01G104800 chr5B 91.297 632 37 9 1 615 12549730 12549100 0.000000e+00 846.0
3 TraesCS5A01G104800 chr5B 89.300 514 40 10 3322 3832 147469045 147468544 8.380000e-177 630.0
4 TraesCS5A01G104800 chr5B 80.906 309 34 10 3841 4130 147468442 147468140 2.150000e-53 220.0
5 TraesCS5A01G104800 chr5D 93.890 1964 80 18 665 2609 135713716 135711774 0.000000e+00 2926.0
6 TraesCS5A01G104800 chr5D 95.529 671 21 5 2608 3277 135711692 135711030 0.000000e+00 1064.0
7 TraesCS5A01G104800 chr5D 90.909 484 22 7 3707 4177 135710468 135709994 8.380000e-177 630.0
8 TraesCS5A01G104800 chr5D 86.354 469 21 11 3289 3721 135710982 135710521 5.380000e-129 472.0
9 TraesCS5A01G104800 chr5D 93.671 79 5 0 3036 3114 556609912 556609990 8.070000e-23 119.0
10 TraesCS5A01G104800 chr3A 93.910 624 31 5 1 621 32204999 32204380 0.000000e+00 935.0
11 TraesCS5A01G104800 chr7A 92.652 626 43 3 1 623 701358205 701358830 0.000000e+00 898.0
12 TraesCS5A01G104800 chr7A 75.472 371 71 16 4232 4590 211734735 211734373 3.680000e-36 163.0
13 TraesCS5A01G104800 chrUn 90.823 632 49 8 1 624 82546990 82546360 0.000000e+00 837.0
14 TraesCS5A01G104800 chr6A 90.924 628 45 9 1 620 531051657 531051034 0.000000e+00 833.0
15 TraesCS5A01G104800 chr2D 90.297 639 42 9 1 620 536208322 536207685 0.000000e+00 819.0
16 TraesCS5A01G104800 chr2D 84.496 129 20 0 1001 1129 134398807 134398935 1.340000e-25 128.0
17 TraesCS5A01G104800 chr3B 89.844 640 44 10 1 620 691342461 691343099 0.000000e+00 802.0
18 TraesCS5A01G104800 chr3B 73.469 245 55 6 4347 4583 804851287 804851045 2.940000e-12 84.2
19 TraesCS5A01G104800 chr7B 89.308 636 51 7 1 620 201419980 201419346 0.000000e+00 782.0
20 TraesCS5A01G104800 chr7B 72.274 321 67 9 4278 4581 34232504 34232819 3.810000e-11 80.5
21 TraesCS5A01G104800 chr6B 89.062 640 48 8 1 622 718729066 718728431 0.000000e+00 774.0
22 TraesCS5A01G104800 chr6B 80.237 845 126 32 2322 3150 685161611 685160792 8.500000e-167 597.0
23 TraesCS5A01G104800 chr6D 78.851 870 129 41 2322 3175 451103129 451102299 1.880000e-148 536.0
24 TraesCS5A01G104800 chr6D 78.873 142 17 11 1505 1643 451103966 451103835 2.940000e-12 84.2
25 TraesCS5A01G104800 chr2B 82.727 220 32 3 2935 3150 780815297 780815080 1.690000e-44 191.0
26 TraesCS5A01G104800 chr2B 83.846 130 21 0 1001 1130 190658474 190658603 1.730000e-24 124.0
27 TraesCS5A01G104800 chr2B 88.710 62 7 0 2706 2767 780815946 780815885 4.930000e-10 76.8
28 TraesCS5A01G104800 chr4D 78.105 306 51 2 4292 4581 7098982 7099287 3.650000e-41 180.0
29 TraesCS5A01G104800 chr2A 84.496 129 20 0 1001 1129 142179558 142179686 1.340000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G104800 chr5A 169184173 169188763 4590 False 8479.000000 8479 100.0000 1 4591 1 chr5A.!!$F1 4590
1 TraesCS5A01G104800 chr5B 147468140 147471669 3529 True 1612.666667 3988 88.4380 741 4130 3 chr5B.!!$R2 3389
2 TraesCS5A01G104800 chr5B 12549100 12549730 630 True 846.000000 846 91.2970 1 615 1 chr5B.!!$R1 614
3 TraesCS5A01G104800 chr5D 135709994 135713716 3722 True 1273.000000 2926 91.6705 665 4177 4 chr5D.!!$R1 3512
4 TraesCS5A01G104800 chr3A 32204380 32204999 619 True 935.000000 935 93.9100 1 621 1 chr3A.!!$R1 620
5 TraesCS5A01G104800 chr7A 701358205 701358830 625 False 898.000000 898 92.6520 1 623 1 chr7A.!!$F1 622
6 TraesCS5A01G104800 chrUn 82546360 82546990 630 True 837.000000 837 90.8230 1 624 1 chrUn.!!$R1 623
7 TraesCS5A01G104800 chr6A 531051034 531051657 623 True 833.000000 833 90.9240 1 620 1 chr6A.!!$R1 619
8 TraesCS5A01G104800 chr2D 536207685 536208322 637 True 819.000000 819 90.2970 1 620 1 chr2D.!!$R1 619
9 TraesCS5A01G104800 chr3B 691342461 691343099 638 False 802.000000 802 89.8440 1 620 1 chr3B.!!$F1 619
10 TraesCS5A01G104800 chr7B 201419346 201419980 634 True 782.000000 782 89.3080 1 620 1 chr7B.!!$R1 619
11 TraesCS5A01G104800 chr6B 718728431 718729066 635 True 774.000000 774 89.0620 1 622 1 chr6B.!!$R2 621
12 TraesCS5A01G104800 chr6B 685160792 685161611 819 True 597.000000 597 80.2370 2322 3150 1 chr6B.!!$R1 828
13 TraesCS5A01G104800 chr6D 451102299 451103966 1667 True 310.100000 536 78.8620 1505 3175 2 chr6D.!!$R1 1670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 576 0.237498 CTTTTCTGTTTCGCGGGGAC 59.763 55.000 6.13 3.17 0.00 4.46 F
1235 1268 0.461548 CCTGGCGTCTCAGATTGCTA 59.538 55.000 2.28 0.00 36.93 3.49 F
1293 1328 1.075050 GCTGGATGGTCATGGATGGAT 59.925 52.381 0.00 0.00 0.00 3.41 F
2472 2903 0.324943 AGTTCACCGGTGCTAGCAAT 59.675 50.000 30.25 7.17 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2319 2741 2.906691 TTTTGGCCACCACTGAAATG 57.093 45.000 3.88 0.00 30.78 2.32 R
2472 2903 3.633525 GGCTAAACAGGATCAATGCATCA 59.366 43.478 0.00 0.00 0.00 3.07 R
3285 3810 0.239347 CACTGGCTACTGCACAAAGC 59.761 55.000 2.29 2.29 45.96 3.51 R
3631 4229 0.110238 CCGGCAGACACAAATGAACG 60.110 55.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.584791 GCTTGTTTAACACATCCAGCG 58.415 47.619 0.00 0.00 34.43 5.18
223 231 0.768609 GGCAGAGGGGGCTTACCTAT 60.769 60.000 0.00 0.00 38.79 2.57
364 377 1.596727 GCGATTCTGTTGGATCTGCTC 59.403 52.381 0.00 0.00 0.00 4.26
460 476 1.074775 GGACAACTGGCCACATGGA 59.925 57.895 0.00 0.00 44.76 3.41
481 503 1.234615 CGGTTTCTGTTGATGGCCGT 61.235 55.000 0.00 0.00 33.87 5.68
509 531 0.257328 TCTGTTTTGGTGGCCAGTCA 59.743 50.000 5.11 4.86 33.81 3.41
516 538 1.303317 GGTGGCCAGTCAATCGGTT 60.303 57.895 5.11 0.00 0.00 4.44
526 548 1.276989 GTCAATCGGTTGGGTAGGTGA 59.723 52.381 8.88 0.00 35.99 4.02
551 576 0.237498 CTTTTCTGTTTCGCGGGGAC 59.763 55.000 6.13 3.17 0.00 4.46
624 652 1.275291 CCCACTAGACGTGTCCAACAT 59.725 52.381 0.00 0.00 42.20 2.71
625 653 2.289444 CCCACTAGACGTGTCCAACATT 60.289 50.000 0.00 0.00 42.20 2.71
626 654 2.993899 CCACTAGACGTGTCCAACATTC 59.006 50.000 0.00 0.00 42.20 2.67
627 655 3.306088 CCACTAGACGTGTCCAACATTCT 60.306 47.826 0.00 0.00 42.20 2.40
628 656 3.675225 CACTAGACGTGTCCAACATTCTG 59.325 47.826 0.00 0.00 38.84 3.02
629 657 2.910688 AGACGTGTCCAACATTCTGT 57.089 45.000 0.00 0.00 0.00 3.41
630 658 4.521639 ACTAGACGTGTCCAACATTCTGTA 59.478 41.667 0.00 0.00 29.54 2.74
631 659 4.537135 AGACGTGTCCAACATTCTGTAT 57.463 40.909 0.00 0.00 0.00 2.29
632 660 4.894784 AGACGTGTCCAACATTCTGTATT 58.105 39.130 0.00 0.00 0.00 1.89
633 661 6.032956 AGACGTGTCCAACATTCTGTATTA 57.967 37.500 0.00 0.00 0.00 0.98
634 662 5.867716 AGACGTGTCCAACATTCTGTATTAC 59.132 40.000 0.00 0.00 0.00 1.89
635 663 4.624024 ACGTGTCCAACATTCTGTATTACG 59.376 41.667 0.00 0.00 0.00 3.18
636 664 4.032445 CGTGTCCAACATTCTGTATTACGG 59.968 45.833 0.00 0.00 0.00 4.02
637 665 3.936453 TGTCCAACATTCTGTATTACGGC 59.064 43.478 0.00 0.00 0.00 5.68
638 666 3.936453 GTCCAACATTCTGTATTACGGCA 59.064 43.478 0.00 0.00 0.00 5.69
639 667 3.936453 TCCAACATTCTGTATTACGGCAC 59.064 43.478 0.00 0.00 0.00 5.01
657 685 5.156804 GGCACGGATGAAGTAATTGTAAG 57.843 43.478 0.00 0.00 0.00 2.34
658 686 4.495844 GGCACGGATGAAGTAATTGTAAGC 60.496 45.833 0.00 0.00 0.00 3.09
659 687 4.094294 GCACGGATGAAGTAATTGTAAGCA 59.906 41.667 0.00 0.00 0.00 3.91
660 688 5.727791 GCACGGATGAAGTAATTGTAAGCAG 60.728 44.000 0.00 0.00 0.00 4.24
661 689 5.351465 CACGGATGAAGTAATTGTAAGCAGT 59.649 40.000 0.00 0.00 0.00 4.40
662 690 6.533723 CACGGATGAAGTAATTGTAAGCAGTA 59.466 38.462 0.00 0.00 0.00 2.74
663 691 7.064134 CACGGATGAAGTAATTGTAAGCAGTAA 59.936 37.037 0.00 0.00 0.00 2.24
699 727 4.953940 TGTAAAGCCCAAAATTCAAGCT 57.046 36.364 0.00 0.00 34.64 3.74
707 735 6.772605 AGCCCAAAATTCAAGCTTTAATTCT 58.227 32.000 16.81 8.25 0.00 2.40
739 767 3.190118 GCAGGGCTATTGTGCATAAGATC 59.810 47.826 1.43 0.00 37.16 2.75
770 798 4.322725 CCAATATATCCAGTTCGCTGCCTA 60.323 45.833 0.00 0.00 43.67 3.93
897 930 7.308469 GGCCATTATCATCTCAGATCAAAGTTC 60.308 40.741 0.00 0.00 0.00 3.01
920 953 5.181245 TCCTTTTTCTTATTCTCTTGTGCGG 59.819 40.000 0.00 0.00 0.00 5.69
942 975 1.714794 ACTCATTCCTTCGTTGCTCG 58.285 50.000 0.00 0.00 41.41 5.03
1144 1177 2.105766 AGGTATCTAAAACGTCCGCCT 58.894 47.619 0.00 0.00 0.00 5.52
1146 1179 2.467838 GTATCTAAAACGTCCGCCTCC 58.532 52.381 0.00 0.00 0.00 4.30
1164 1197 2.486982 CTCCCACTTGCTTGATGTCTTG 59.513 50.000 0.00 0.00 0.00 3.02
1165 1198 1.542915 CCCACTTGCTTGATGTCTTGG 59.457 52.381 0.00 0.00 0.00 3.61
1179 1212 1.120530 TCTTGGGCTTAGATCCCGAC 58.879 55.000 0.00 0.00 46.92 4.79
1194 1227 3.059898 CGACGCTATCGCTGTAGTC 57.940 57.895 0.00 0.00 45.52 2.59
1234 1267 1.220206 CCTGGCGTCTCAGATTGCT 59.780 57.895 2.28 0.00 36.93 3.91
1235 1268 0.461548 CCTGGCGTCTCAGATTGCTA 59.538 55.000 2.28 0.00 36.93 3.49
1293 1328 1.075050 GCTGGATGGTCATGGATGGAT 59.925 52.381 0.00 0.00 0.00 3.41
1294 1329 2.490351 GCTGGATGGTCATGGATGGATT 60.490 50.000 0.00 0.00 0.00 3.01
1295 1330 3.154710 CTGGATGGTCATGGATGGATTG 58.845 50.000 0.00 0.00 0.00 2.67
1296 1331 2.158430 TGGATGGTCATGGATGGATTGG 60.158 50.000 0.00 0.00 0.00 3.16
1297 1332 2.108776 GGATGGTCATGGATGGATTGGA 59.891 50.000 0.00 0.00 0.00 3.53
1312 1347 3.376859 GGATTGGAACGTGTGAATATGCA 59.623 43.478 0.00 0.00 0.00 3.96
1340 1375 5.522460 CGATCGTGTGGTATATTTGGTTCTT 59.478 40.000 7.03 0.00 0.00 2.52
1341 1376 6.509517 CGATCGTGTGGTATATTTGGTTCTTG 60.510 42.308 7.03 0.00 0.00 3.02
1363 1399 2.704464 TGCTCTGCTGTGCTTATCAT 57.296 45.000 16.89 0.00 34.18 2.45
1364 1400 2.558378 TGCTCTGCTGTGCTTATCATC 58.442 47.619 16.89 0.00 34.18 2.92
1365 1401 1.526041 GCTCTGCTGTGCTTATCATCG 59.474 52.381 10.03 0.00 0.00 3.84
1396 1434 5.863965 TGGATGTTCTGTGAAATGTCTACA 58.136 37.500 0.00 0.00 0.00 2.74
1794 1857 3.114809 TGCAAGTCTTTGATTTGTTGCG 58.885 40.909 0.00 0.00 42.53 4.85
1839 1902 6.059787 AGGTCTAGACTGATTTGATTTGCT 57.940 37.500 21.88 3.48 0.00 3.91
1864 1927 4.278170 TCCATGTCAGTTGTTTGCTTTAGG 59.722 41.667 0.00 0.00 0.00 2.69
2319 2741 5.229423 TGGCTGAACTGAAAACAAATATGC 58.771 37.500 0.00 0.00 0.00 3.14
2363 2788 2.689983 GACCAAATATGTGAAGCCTGGG 59.310 50.000 0.00 0.00 0.00 4.45
2461 2892 4.123497 TCACTGGATAATCAGTTCACCG 57.877 45.455 0.00 0.00 44.74 4.94
2472 2903 0.324943 AGTTCACCGGTGCTAGCAAT 59.675 50.000 30.25 7.17 0.00 3.56
2538 2969 9.831737 CCAGATCTGTAGTTTTCACTTTAAATG 57.168 33.333 21.11 0.00 34.06 2.32
2654 3173 6.389091 TGCTATTTTGTTGTTCTGGCTAATG 58.611 36.000 0.00 0.00 0.00 1.90
2661 3180 6.509418 TGTTGTTCTGGCTAATGTATTTCC 57.491 37.500 0.00 0.00 0.00 3.13
3141 3662 2.997980 TGAACCATGTTATCCGTGCAT 58.002 42.857 0.00 0.00 0.00 3.96
3150 3674 5.749596 TGTTATCCGTGCATATTTCTTGG 57.250 39.130 0.00 0.00 0.00 3.61
3153 3677 6.038161 TGTTATCCGTGCATATTTCTTGGAAG 59.962 38.462 0.00 0.00 0.00 3.46
3171 3696 8.324306 TCTTGGAAGTGAATAGATTTGAGATGT 58.676 33.333 0.00 0.00 0.00 3.06
3175 3700 9.823647 GGAAGTGAATAGATTTGAGATGTCTTA 57.176 33.333 0.00 0.00 0.00 2.10
3262 3787 9.841880 GTATCTCCTTTTCTTGTTAATTTGGTC 57.158 33.333 0.00 0.00 0.00 4.02
3264 3789 7.940850 TCTCCTTTTCTTGTTAATTTGGTCTG 58.059 34.615 0.00 0.00 0.00 3.51
3286 3811 2.357952 GGAATTCCCTGTCCGTATTTGC 59.642 50.000 14.03 0.00 0.00 3.68
3287 3812 3.279434 GAATTCCCTGTCCGTATTTGCT 58.721 45.455 0.00 0.00 0.00 3.91
3306 3867 0.472044 TTTGTGCAGTAGCCAGTGGA 59.528 50.000 15.20 0.00 41.13 4.02
3316 3877 5.542779 CAGTAGCCAGTGGACCTAATATTC 58.457 45.833 15.20 0.00 0.00 1.75
3318 3879 4.965200 AGCCAGTGGACCTAATATTCTC 57.035 45.455 15.20 0.00 0.00 2.87
3320 3881 5.716979 AGCCAGTGGACCTAATATTCTCTA 58.283 41.667 15.20 0.00 0.00 2.43
3348 3921 8.911247 AGATTTAGTGTGTTGAAACTTGAAAC 57.089 30.769 0.00 0.00 0.00 2.78
3349 3922 8.739972 AGATTTAGTGTGTTGAAACTTGAAACT 58.260 29.630 0.00 0.00 0.00 2.66
3350 3923 8.687824 ATTTAGTGTGTTGAAACTTGAAACTG 57.312 30.769 0.00 0.00 0.00 3.16
3351 3924 4.485163 AGTGTGTTGAAACTTGAAACTGC 58.515 39.130 0.00 0.00 0.00 4.40
3352 3925 4.218417 AGTGTGTTGAAACTTGAAACTGCT 59.782 37.500 0.00 0.00 0.00 4.24
3370 3943 4.576463 ACTGCTCCTATGAATAAAAAGCCG 59.424 41.667 0.00 0.00 0.00 5.52
3371 3944 3.882888 TGCTCCTATGAATAAAAAGCCGG 59.117 43.478 0.00 0.00 0.00 6.13
3376 3949 2.715737 TGAATAAAAAGCCGGTGCAC 57.284 45.000 8.80 8.80 41.13 4.57
3377 3950 1.271102 TGAATAAAAAGCCGGTGCACC 59.729 47.619 26.78 26.78 41.13 5.01
3391 3964 3.737047 CGGTGCACCTACCACTGTTATAG 60.737 52.174 32.28 8.72 40.89 1.31
3420 3993 4.661993 TTTACATGTGCTGTTTAGAGCG 57.338 40.909 9.11 0.00 42.32 5.03
3424 3997 2.065993 TGTGCTGTTTAGAGCGACTC 57.934 50.000 0.00 0.00 42.32 3.36
3427 4000 1.808343 TGCTGTTTAGAGCGACTCGTA 59.192 47.619 0.00 0.00 42.32 3.43
3432 4005 1.432514 TTAGAGCGACTCGTACACGT 58.567 50.000 1.19 0.00 40.80 4.49
3440 4013 3.089267 CGACTCGTACACGTGAACTATG 58.911 50.000 25.01 9.98 40.80 2.23
3450 4023 5.408356 ACACGTGAACTATGTCTTCCATAC 58.592 41.667 25.01 0.00 34.86 2.39
3456 4029 2.698797 ACTATGTCTTCCATACCCCACG 59.301 50.000 0.00 0.00 34.86 4.94
3593 4166 0.916086 ACATCGGCCCCAAGTAATCA 59.084 50.000 0.00 0.00 0.00 2.57
3597 4171 1.455773 GGCCCCAAGTAATCAGCCC 60.456 63.158 0.00 0.00 34.23 5.19
3625 4199 4.209538 CCATGGGATGCACTATTTTCTCA 58.790 43.478 2.85 0.00 0.00 3.27
3631 4229 5.163713 GGGATGCACTATTTTCTCAAGTGTC 60.164 44.000 0.00 0.00 42.10 3.67
3809 4475 2.749621 CCCTCTTGACTATTGGTGTTGC 59.250 50.000 0.00 0.00 0.00 4.17
3837 4596 3.169908 TGCAGTGTGGAGGTAATCAGTA 58.830 45.455 0.00 0.00 0.00 2.74
3839 4598 3.770666 CAGTGTGGAGGTAATCAGTACG 58.229 50.000 0.00 0.00 33.01 3.67
3873 4632 3.699038 TGCTATAAATTGAGCAACACCCC 59.301 43.478 7.33 0.00 45.47 4.95
3894 4653 3.282428 CGCCGTGTTGTGTTTTTACTAC 58.718 45.455 0.00 0.00 0.00 2.73
3896 4655 4.208873 CGCCGTGTTGTGTTTTTACTACTA 59.791 41.667 0.00 0.00 0.00 1.82
3897 4656 5.610982 CGCCGTGTTGTGTTTTTACTACTAG 60.611 44.000 0.00 0.00 0.00 2.57
3899 4658 6.642917 CCGTGTTGTGTTTTTACTACTAGTG 58.357 40.000 5.39 0.00 0.00 2.74
3900 4659 6.256321 CCGTGTTGTGTTTTTACTACTAGTGT 59.744 38.462 5.39 4.48 0.00 3.55
3901 4660 7.201548 CCGTGTTGTGTTTTTACTACTAGTGTT 60.202 37.037 5.39 0.00 0.00 3.32
3957 4726 0.037326 TACTGCCCAGAAAGACAGCG 60.037 55.000 1.69 0.00 33.35 5.18
3967 4736 0.392193 AAAGACAGCGGGCAGATGAG 60.392 55.000 10.42 0.00 38.85 2.90
4013 4784 1.886542 GAATGGAAGCTTCGGTGGTTT 59.113 47.619 19.91 7.05 0.00 3.27
4024 4795 5.944007 AGCTTCGGTGGTTTGATTATTACTT 59.056 36.000 0.00 0.00 0.00 2.24
4108 4913 2.614481 CGCAAGGTGTTTTAGCCTCCTA 60.614 50.000 0.00 0.00 33.24 2.94
4166 4971 3.596865 GAGTGAACTCTCTCTCGCG 57.403 57.895 0.00 0.00 39.81 5.87
4182 4987 4.046998 CGCGCGACTGTGTCACAC 62.047 66.667 28.94 0.00 32.09 3.82
4183 4988 3.702555 GCGCGACTGTGTCACACC 61.703 66.667 12.10 0.00 32.73 4.16
4184 4989 3.036084 CGCGACTGTGTCACACCC 61.036 66.667 5.21 0.00 32.73 4.61
4185 4990 3.036084 GCGACTGTGTCACACCCG 61.036 66.667 5.21 14.53 32.73 5.28
4186 4991 2.415843 CGACTGTGTCACACCCGT 59.584 61.111 5.21 2.25 32.73 5.28
4187 4992 1.949133 CGACTGTGTCACACCCGTG 60.949 63.158 5.21 0.00 45.08 4.94
4188 4993 1.594293 GACTGTGTCACACCCGTGG 60.594 63.158 5.21 0.00 43.79 4.94
4189 4994 2.280797 CTGTGTCACACCCGTGGG 60.281 66.667 5.21 2.58 43.79 4.61
4201 5006 3.148084 CGTGGGTGACAGGGTCTT 58.852 61.111 0.00 0.00 33.15 3.01
4202 5007 1.004918 CGTGGGTGACAGGGTCTTC 60.005 63.158 0.00 0.00 33.15 2.87
4203 5008 1.375326 GTGGGTGACAGGGTCTTCC 59.625 63.158 0.00 1.23 33.15 3.46
4214 5019 3.358554 GGTCTTCCCCCTTTTGTCC 57.641 57.895 0.00 0.00 0.00 4.02
4215 5020 0.251653 GGTCTTCCCCCTTTTGTCCC 60.252 60.000 0.00 0.00 0.00 4.46
4216 5021 0.778083 GTCTTCCCCCTTTTGTCCCT 59.222 55.000 0.00 0.00 0.00 4.20
4217 5022 1.073098 TCTTCCCCCTTTTGTCCCTC 58.927 55.000 0.00 0.00 0.00 4.30
4218 5023 0.322546 CTTCCCCCTTTTGTCCCTCG 60.323 60.000 0.00 0.00 0.00 4.63
4219 5024 2.361230 CCCCCTTTTGTCCCTCGC 60.361 66.667 0.00 0.00 0.00 5.03
4220 5025 2.746277 CCCCTTTTGTCCCTCGCG 60.746 66.667 0.00 0.00 0.00 5.87
4221 5026 2.746277 CCCTTTTGTCCCTCGCGG 60.746 66.667 6.13 0.00 0.00 6.46
4222 5027 3.431725 CCTTTTGTCCCTCGCGGC 61.432 66.667 6.13 0.00 0.00 6.53
4223 5028 2.668212 CTTTTGTCCCTCGCGGCA 60.668 61.111 6.13 0.00 0.00 5.69
4224 5029 2.668212 TTTTGTCCCTCGCGGCAG 60.668 61.111 6.13 0.00 0.00 4.85
4225 5030 3.469863 TTTTGTCCCTCGCGGCAGT 62.470 57.895 6.13 0.00 0.00 4.40
4226 5031 3.876589 TTTGTCCCTCGCGGCAGTC 62.877 63.158 6.13 0.00 0.00 3.51
4251 5056 3.292159 GCGGCGGGGTTCTTTGTT 61.292 61.111 9.78 0.00 0.00 2.83
4252 5057 2.642700 CGGCGGGGTTCTTTGTTG 59.357 61.111 0.00 0.00 0.00 3.33
4253 5058 2.190841 CGGCGGGGTTCTTTGTTGT 61.191 57.895 0.00 0.00 0.00 3.32
4254 5059 1.730451 CGGCGGGGTTCTTTGTTGTT 61.730 55.000 0.00 0.00 0.00 2.83
4255 5060 0.249280 GGCGGGGTTCTTTGTTGTTG 60.249 55.000 0.00 0.00 0.00 3.33
4256 5061 0.458260 GCGGGGTTCTTTGTTGTTGT 59.542 50.000 0.00 0.00 0.00 3.32
4257 5062 1.677052 GCGGGGTTCTTTGTTGTTGTA 59.323 47.619 0.00 0.00 0.00 2.41
4258 5063 2.287368 GCGGGGTTCTTTGTTGTTGTAG 60.287 50.000 0.00 0.00 0.00 2.74
4259 5064 2.946990 CGGGGTTCTTTGTTGTTGTAGT 59.053 45.455 0.00 0.00 0.00 2.73
4260 5065 3.242936 CGGGGTTCTTTGTTGTTGTAGTG 60.243 47.826 0.00 0.00 0.00 2.74
4261 5066 3.067601 GGGGTTCTTTGTTGTTGTAGTGG 59.932 47.826 0.00 0.00 0.00 4.00
4262 5067 3.067601 GGGTTCTTTGTTGTTGTAGTGGG 59.932 47.826 0.00 0.00 0.00 4.61
4263 5068 3.697542 GGTTCTTTGTTGTTGTAGTGGGT 59.302 43.478 0.00 0.00 0.00 4.51
4264 5069 4.439563 GGTTCTTTGTTGTTGTAGTGGGTG 60.440 45.833 0.00 0.00 0.00 4.61
4265 5070 4.223556 TCTTTGTTGTTGTAGTGGGTGA 57.776 40.909 0.00 0.00 0.00 4.02
4266 5071 4.787551 TCTTTGTTGTTGTAGTGGGTGAT 58.212 39.130 0.00 0.00 0.00 3.06
4267 5072 4.819630 TCTTTGTTGTTGTAGTGGGTGATC 59.180 41.667 0.00 0.00 0.00 2.92
4268 5073 4.431416 TTGTTGTTGTAGTGGGTGATCT 57.569 40.909 0.00 0.00 0.00 2.75
4269 5074 3.738982 TGTTGTTGTAGTGGGTGATCTG 58.261 45.455 0.00 0.00 0.00 2.90
4270 5075 2.472695 TGTTGTAGTGGGTGATCTGC 57.527 50.000 0.00 0.00 0.00 4.26
4271 5076 1.977854 TGTTGTAGTGGGTGATCTGCT 59.022 47.619 0.00 0.00 0.00 4.24
4272 5077 3.169908 TGTTGTAGTGGGTGATCTGCTA 58.830 45.455 0.00 0.00 0.00 3.49
4273 5078 3.195610 TGTTGTAGTGGGTGATCTGCTAG 59.804 47.826 0.00 0.00 0.00 3.42
4274 5079 2.388735 TGTAGTGGGTGATCTGCTAGG 58.611 52.381 0.00 0.00 0.00 3.02
4275 5080 1.069358 GTAGTGGGTGATCTGCTAGGC 59.931 57.143 0.00 0.00 0.00 3.93
4276 5081 0.618680 AGTGGGTGATCTGCTAGGCA 60.619 55.000 0.00 0.00 36.92 4.75
4287 5092 3.188786 CTAGGCAGCGGCGTTGTC 61.189 66.667 20.85 20.85 42.47 3.18
4292 5097 4.368808 CAGCGGCGTTGTCGTTGG 62.369 66.667 15.94 0.00 38.14 3.77
4322 5127 4.901627 GCAGCGGTGCGATTTATC 57.098 55.556 25.22 0.00 40.71 1.75
4332 5137 4.338327 GATTTATCGACGCCCGCT 57.662 55.556 0.00 0.00 38.37 5.52
4333 5138 2.601562 GATTTATCGACGCCCGCTT 58.398 52.632 0.00 0.00 38.37 4.68
4334 5139 0.232303 GATTTATCGACGCCCGCTTG 59.768 55.000 0.00 0.00 38.37 4.01
4335 5140 1.157870 ATTTATCGACGCCCGCTTGG 61.158 55.000 0.00 0.00 38.37 3.61
4344 5149 3.555967 CCCGCTTGGCCTAGATCT 58.444 61.111 19.07 0.00 0.00 2.75
4345 5150 2.746697 CCCGCTTGGCCTAGATCTA 58.253 57.895 19.07 1.69 0.00 1.98
4346 5151 0.605589 CCCGCTTGGCCTAGATCTAG 59.394 60.000 21.04 21.04 0.00 2.43
4355 5160 2.938428 CCTAGATCTAGGCCCCATCT 57.062 55.000 31.21 12.20 45.36 2.90
4356 5161 2.465813 CCTAGATCTAGGCCCCATCTG 58.534 57.143 31.21 8.81 45.36 2.90
4357 5162 1.830477 CTAGATCTAGGCCCCATCTGC 59.170 57.143 20.37 0.00 0.00 4.26
4358 5163 1.190833 AGATCTAGGCCCCATCTGCG 61.191 60.000 0.00 0.00 0.00 5.18
4359 5164 1.460305 ATCTAGGCCCCATCTGCGT 60.460 57.895 0.00 0.00 0.00 5.24
4360 5165 1.476007 ATCTAGGCCCCATCTGCGTC 61.476 60.000 0.00 0.00 0.00 5.19
4361 5166 2.041922 TAGGCCCCATCTGCGTCT 60.042 61.111 0.00 0.00 0.00 4.18
4362 5167 0.827925 CTAGGCCCCATCTGCGTCTA 60.828 60.000 0.00 0.00 0.00 2.59
4363 5168 0.827925 TAGGCCCCATCTGCGTCTAG 60.828 60.000 0.00 0.00 0.00 2.43
4364 5169 2.423446 GCCCCATCTGCGTCTAGG 59.577 66.667 0.00 0.00 0.00 3.02
4365 5170 2.435693 GCCCCATCTGCGTCTAGGT 61.436 63.158 0.00 0.00 0.00 3.08
4366 5171 1.113517 GCCCCATCTGCGTCTAGGTA 61.114 60.000 0.00 0.00 0.00 3.08
4367 5172 0.962489 CCCCATCTGCGTCTAGGTAG 59.038 60.000 0.00 0.00 0.00 3.18
4368 5173 0.962489 CCCATCTGCGTCTAGGTAGG 59.038 60.000 0.00 0.00 0.00 3.18
4369 5174 0.315568 CCATCTGCGTCTAGGTAGGC 59.684 60.000 0.00 0.00 0.00 3.93
4370 5175 1.323412 CATCTGCGTCTAGGTAGGCT 58.677 55.000 0.00 0.00 0.00 4.58
4371 5176 2.505405 CATCTGCGTCTAGGTAGGCTA 58.495 52.381 0.00 0.00 0.00 3.93
4372 5177 2.257691 TCTGCGTCTAGGTAGGCTAG 57.742 55.000 0.00 0.00 0.00 3.42
4373 5178 0.594110 CTGCGTCTAGGTAGGCTAGC 59.406 60.000 15.72 15.72 0.00 3.42
4374 5179 1.164662 TGCGTCTAGGTAGGCTAGCG 61.165 60.000 17.26 5.29 0.00 4.26
4375 5180 1.854163 GCGTCTAGGTAGGCTAGCGG 61.854 65.000 17.26 14.02 0.00 5.52
4376 5181 0.534652 CGTCTAGGTAGGCTAGCGGT 60.535 60.000 17.26 4.52 0.00 5.68
4377 5182 0.953003 GTCTAGGTAGGCTAGCGGTG 59.047 60.000 17.26 11.54 0.00 4.94
4378 5183 0.178998 TCTAGGTAGGCTAGCGGTGG 60.179 60.000 17.26 9.32 0.00 4.61
4379 5184 1.152610 TAGGTAGGCTAGCGGTGGG 60.153 63.158 17.26 0.00 0.00 4.61
4380 5185 2.651841 TAGGTAGGCTAGCGGTGGGG 62.652 65.000 17.26 0.00 0.00 4.96
4381 5186 3.547513 GTAGGCTAGCGGTGGGGG 61.548 72.222 9.00 0.00 0.00 5.40
4382 5187 3.757941 TAGGCTAGCGGTGGGGGA 61.758 66.667 9.00 0.00 0.00 4.81
4383 5188 3.751049 TAGGCTAGCGGTGGGGGAG 62.751 68.421 9.00 0.00 0.00 4.30
4386 5191 3.155167 CTAGCGGTGGGGGAGGTC 61.155 72.222 0.00 0.00 0.00 3.85
4414 5219 2.935481 CCACCAAGAGGCAGGGGA 60.935 66.667 0.00 0.00 39.06 4.81
4415 5220 2.673523 CACCAAGAGGCAGGGGAG 59.326 66.667 0.00 0.00 39.06 4.30
4416 5221 3.334054 ACCAAGAGGCAGGGGAGC 61.334 66.667 0.00 0.00 39.06 4.70
4417 5222 4.479993 CCAAGAGGCAGGGGAGCG 62.480 72.222 0.00 0.00 34.64 5.03
4418 5223 4.479993 CAAGAGGCAGGGGAGCGG 62.480 72.222 0.00 0.00 34.64 5.52
4419 5224 4.722535 AAGAGGCAGGGGAGCGGA 62.723 66.667 0.00 0.00 34.64 5.54
4422 5227 4.488911 AGGCAGGGGAGCGGAGAT 62.489 66.667 0.00 0.00 34.64 2.75
4423 5228 4.247380 GGCAGGGGAGCGGAGATG 62.247 72.222 0.00 0.00 34.64 2.90
4424 5229 4.247380 GCAGGGGAGCGGAGATGG 62.247 72.222 0.00 0.00 0.00 3.51
4425 5230 3.554342 CAGGGGAGCGGAGATGGG 61.554 72.222 0.00 0.00 0.00 4.00
4435 5240 4.489771 GAGATGGGCGGGTGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
4437 5242 4.360405 GATGGGCGGGTGGGTGTT 62.360 66.667 0.00 0.00 0.00 3.32
4438 5243 4.676951 ATGGGCGGGTGGGTGTTG 62.677 66.667 0.00 0.00 0.00 3.33
4443 5248 3.601685 CGGGTGGGTGTTGGCAAC 61.602 66.667 23.12 23.12 0.00 4.17
4444 5249 3.601685 GGGTGGGTGTTGGCAACG 61.602 66.667 24.03 0.00 42.51 4.10
4445 5250 4.279043 GGTGGGTGTTGGCAACGC 62.279 66.667 30.53 30.53 41.08 4.84
4446 5251 3.216292 GTGGGTGTTGGCAACGCT 61.216 61.111 34.64 0.00 41.52 5.07
4447 5252 3.215568 TGGGTGTTGGCAACGCTG 61.216 61.111 34.64 0.00 41.52 5.18
4448 5253 3.977244 GGGTGTTGGCAACGCTGG 61.977 66.667 34.64 0.00 41.52 4.85
4466 5271 3.108289 CGTCGACCTGCTGCAGTG 61.108 66.667 26.41 19.72 0.00 3.66
4467 5272 2.029666 GTCGACCTGCTGCAGTGT 59.970 61.111 26.41 22.48 0.00 3.55
4468 5273 2.029518 TCGACCTGCTGCAGTGTG 59.970 61.111 26.41 14.78 0.00 3.82
4469 5274 3.046087 CGACCTGCTGCAGTGTGG 61.046 66.667 26.41 19.82 0.00 4.17
4470 5275 3.360340 GACCTGCTGCAGTGTGGC 61.360 66.667 26.41 11.43 0.00 5.01
4471 5276 4.962836 ACCTGCTGCAGTGTGGCC 62.963 66.667 26.41 0.00 0.00 5.36
4493 5298 4.796495 GGGCTTTGCGGGTCCGAT 62.796 66.667 14.15 0.00 42.83 4.18
4494 5299 2.750237 GGCTTTGCGGGTCCGATT 60.750 61.111 14.15 0.00 42.83 3.34
4495 5300 2.340328 GGCTTTGCGGGTCCGATTT 61.340 57.895 14.15 0.00 42.83 2.17
4496 5301 1.154035 GCTTTGCGGGTCCGATTTG 60.154 57.895 14.15 1.55 42.83 2.32
4497 5302 1.506262 CTTTGCGGGTCCGATTTGG 59.494 57.895 14.15 0.00 42.83 3.28
4498 5303 1.933115 CTTTGCGGGTCCGATTTGGG 61.933 60.000 14.15 0.00 42.83 4.12
4504 5309 4.142780 GTCCGATTTGGGCCTAGC 57.857 61.111 4.53 0.00 35.79 3.42
4521 5326 4.875713 CCGGGTGGCCTGGTATGC 62.876 72.222 3.32 0.00 44.75 3.14
4527 5332 4.764143 GGCCTGGTATGCCTTGTT 57.236 55.556 0.16 0.00 45.70 2.83
4528 5333 2.192605 GGCCTGGTATGCCTTGTTG 58.807 57.895 0.16 0.00 45.70 3.33
4529 5334 1.512694 GCCTGGTATGCCTTGTTGC 59.487 57.895 0.16 0.00 35.27 4.17
4530 5335 0.967380 GCCTGGTATGCCTTGTTGCT 60.967 55.000 0.16 0.00 35.27 3.91
4531 5336 0.813184 CCTGGTATGCCTTGTTGCTG 59.187 55.000 0.16 0.00 35.27 4.41
4532 5337 1.538047 CTGGTATGCCTTGTTGCTGT 58.462 50.000 0.16 0.00 35.27 4.40
4533 5338 1.200716 CTGGTATGCCTTGTTGCTGTG 59.799 52.381 0.16 0.00 35.27 3.66
4534 5339 1.247567 GGTATGCCTTGTTGCTGTGT 58.752 50.000 0.00 0.00 0.00 3.72
4535 5340 1.200020 GGTATGCCTTGTTGCTGTGTC 59.800 52.381 0.00 0.00 0.00 3.67
4536 5341 1.200020 GTATGCCTTGTTGCTGTGTCC 59.800 52.381 0.00 0.00 0.00 4.02
4537 5342 1.518056 ATGCCTTGTTGCTGTGTCCG 61.518 55.000 0.00 0.00 0.00 4.79
4538 5343 2.908073 GCCTTGTTGCTGTGTCCGG 61.908 63.158 0.00 0.00 0.00 5.14
4539 5344 1.227823 CCTTGTTGCTGTGTCCGGA 60.228 57.895 0.00 0.00 0.00 5.14
4540 5345 0.606401 CCTTGTTGCTGTGTCCGGAT 60.606 55.000 7.81 0.00 0.00 4.18
4541 5346 0.518636 CTTGTTGCTGTGTCCGGATG 59.481 55.000 7.81 0.00 0.00 3.51
4542 5347 0.888736 TTGTTGCTGTGTCCGGATGG 60.889 55.000 7.81 0.00 0.00 3.51
4543 5348 2.359850 TTGCTGTGTCCGGATGGC 60.360 61.111 7.81 10.58 34.14 4.40
4544 5349 4.758251 TGCTGTGTCCGGATGGCG 62.758 66.667 7.81 0.00 34.14 5.69
4546 5351 4.082523 CTGTGTCCGGATGGCGGT 62.083 66.667 7.81 0.00 34.14 5.68
4547 5352 4.077184 TGTGTCCGGATGGCGGTC 62.077 66.667 7.81 0.00 34.14 4.79
4573 5378 3.435186 GCCGAAAGCACAGGCCTC 61.435 66.667 0.00 0.00 44.80 4.70
4574 5379 2.747855 CCGAAAGCACAGGCCTCC 60.748 66.667 0.00 0.00 42.56 4.30
4575 5380 2.747855 CGAAAGCACAGGCCTCCC 60.748 66.667 0.00 0.00 42.56 4.30
4576 5381 2.747855 GAAAGCACAGGCCTCCCG 60.748 66.667 0.00 0.00 42.56 5.14
4588 5393 4.619227 CTCCCGCACGTTGGTGGT 62.619 66.667 4.93 0.00 44.54 4.16
4589 5394 4.920112 TCCCGCACGTTGGTGGTG 62.920 66.667 4.93 0.00 44.54 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.454504 CACACCAACCTACTTGATGTTACC 59.545 45.833 0.00 0.00 33.87 2.85
223 231 4.780815 CCATACCAGGCAGTAAGATCAAA 58.219 43.478 0.00 0.00 0.00 2.69
249 257 1.338136 ATCTAAGGGCAGGGTGGTCG 61.338 60.000 0.00 0.00 0.00 4.79
364 377 0.321671 TTCTTCTTCTCCACGCCAGG 59.678 55.000 0.00 0.00 0.00 4.45
438 454 1.803453 ATGTGGCCAGTTGTCCCCAT 61.803 55.000 5.11 0.00 0.00 4.00
460 476 0.958822 GGCCATCAACAGAAACCGTT 59.041 50.000 0.00 0.00 0.00 4.44
481 503 2.621055 CCACCAAAACAGACCAATCGAA 59.379 45.455 0.00 0.00 0.00 3.71
509 531 0.616891 GGTCACCTACCCAACCGATT 59.383 55.000 0.00 0.00 43.16 3.34
526 548 1.602377 CGCGAAACAGAAAAGGAAGGT 59.398 47.619 0.00 0.00 0.00 3.50
551 576 1.344438 GGCTGAAAAGGAAAACCCCTG 59.656 52.381 0.00 0.00 36.49 4.45
624 652 2.427812 TCATCCGTGCCGTAATACAGAA 59.572 45.455 0.00 0.00 0.00 3.02
625 653 2.025898 TCATCCGTGCCGTAATACAGA 58.974 47.619 0.00 0.00 0.00 3.41
626 654 2.502213 TCATCCGTGCCGTAATACAG 57.498 50.000 0.00 0.00 0.00 2.74
627 655 2.166870 ACTTCATCCGTGCCGTAATACA 59.833 45.455 0.00 0.00 0.00 2.29
628 656 2.817901 ACTTCATCCGTGCCGTAATAC 58.182 47.619 0.00 0.00 0.00 1.89
629 657 4.652421 TTACTTCATCCGTGCCGTAATA 57.348 40.909 0.00 0.00 0.00 0.98
630 658 3.530265 TTACTTCATCCGTGCCGTAAT 57.470 42.857 0.00 0.00 0.00 1.89
631 659 3.530265 ATTACTTCATCCGTGCCGTAA 57.470 42.857 0.00 0.00 0.00 3.18
632 660 3.191669 CAATTACTTCATCCGTGCCGTA 58.808 45.455 0.00 0.00 0.00 4.02
633 661 2.006888 CAATTACTTCATCCGTGCCGT 58.993 47.619 0.00 0.00 0.00 5.68
634 662 2.006888 ACAATTACTTCATCCGTGCCG 58.993 47.619 0.00 0.00 0.00 5.69
635 663 4.495844 GCTTACAATTACTTCATCCGTGCC 60.496 45.833 0.00 0.00 0.00 5.01
636 664 4.094294 TGCTTACAATTACTTCATCCGTGC 59.906 41.667 0.00 0.00 0.00 5.34
637 665 5.351465 ACTGCTTACAATTACTTCATCCGTG 59.649 40.000 0.00 0.00 0.00 4.94
638 666 5.488341 ACTGCTTACAATTACTTCATCCGT 58.512 37.500 0.00 0.00 0.00 4.69
639 667 7.534085 TTACTGCTTACAATTACTTCATCCG 57.466 36.000 0.00 0.00 0.00 4.18
650 678 9.150348 GGTGCAAATTTTATTACTGCTTACAAT 57.850 29.630 0.00 0.00 34.10 2.71
651 679 8.144478 TGGTGCAAATTTTATTACTGCTTACAA 58.856 29.630 0.00 0.00 34.10 2.41
652 680 7.661968 TGGTGCAAATTTTATTACTGCTTACA 58.338 30.769 0.00 0.00 34.10 2.41
653 681 8.594687 CATGGTGCAAATTTTATTACTGCTTAC 58.405 33.333 0.00 0.00 34.10 2.34
654 682 8.310382 ACATGGTGCAAATTTTATTACTGCTTA 58.690 29.630 0.00 0.00 34.10 3.09
655 683 7.160726 ACATGGTGCAAATTTTATTACTGCTT 58.839 30.769 0.00 0.00 34.10 3.91
656 684 6.700352 ACATGGTGCAAATTTTATTACTGCT 58.300 32.000 0.00 0.00 34.10 4.24
657 685 6.966435 ACATGGTGCAAATTTTATTACTGC 57.034 33.333 0.00 0.00 0.00 4.40
659 687 9.150348 GCTTTACATGGTGCAAATTTTATTACT 57.850 29.630 0.00 0.00 0.00 2.24
660 688 8.387354 GGCTTTACATGGTGCAAATTTTATTAC 58.613 33.333 0.00 0.00 0.00 1.89
661 689 7.550906 GGGCTTTACATGGTGCAAATTTTATTA 59.449 33.333 0.00 0.00 0.00 0.98
662 690 6.374053 GGGCTTTACATGGTGCAAATTTTATT 59.626 34.615 0.00 0.00 0.00 1.40
663 691 5.879777 GGGCTTTACATGGTGCAAATTTTAT 59.120 36.000 0.00 0.00 0.00 1.40
672 700 2.829741 TTTTGGGCTTTACATGGTGC 57.170 45.000 0.00 0.00 0.00 5.01
673 701 4.892433 TGAATTTTGGGCTTTACATGGTG 58.108 39.130 0.00 0.00 0.00 4.17
674 702 5.550290 CTTGAATTTTGGGCTTTACATGGT 58.450 37.500 0.00 0.00 0.00 3.55
699 727 5.601662 CCCTGCGAGTATCAGAGAATTAAA 58.398 41.667 0.00 0.00 33.54 1.52
707 735 2.294449 ATAGCCCTGCGAGTATCAGA 57.706 50.000 0.00 0.00 33.54 3.27
716 744 1.265095 CTTATGCACAATAGCCCTGCG 59.735 52.381 0.00 0.00 33.35 5.18
739 767 5.049680 CGAACTGGATATATTGGTTTTCGGG 60.050 44.000 0.00 0.00 31.88 5.14
770 798 4.473520 CGGCGAGGGCACAAGGAT 62.474 66.667 0.00 0.00 42.47 3.24
897 930 5.393962 CCGCACAAGAGAATAAGAAAAAGG 58.606 41.667 0.00 0.00 0.00 3.11
942 975 8.567948 TCTACAAATTCCAAGAAATTCAGTCAC 58.432 33.333 0.00 0.00 0.00 3.67
1133 1166 2.814835 AAGTGGGAGGCGGACGTTT 61.815 57.895 0.00 0.00 0.00 3.60
1144 1177 2.507484 CAAGACATCAAGCAAGTGGGA 58.493 47.619 0.00 0.00 0.00 4.37
1146 1179 1.542915 CCCAAGACATCAAGCAAGTGG 59.457 52.381 0.00 0.00 0.00 4.00
1164 1197 1.177256 TAGCGTCGGGATCTAAGCCC 61.177 60.000 0.00 0.00 42.41 5.19
1165 1198 0.889306 ATAGCGTCGGGATCTAAGCC 59.111 55.000 0.00 0.00 0.00 4.35
1194 1227 2.259618 CGAACACACGGATCTAACAGG 58.740 52.381 0.00 0.00 0.00 4.00
1293 1328 4.006319 TGATGCATATTCACACGTTCCAA 58.994 39.130 0.00 0.00 0.00 3.53
1294 1329 3.373748 GTGATGCATATTCACACGTTCCA 59.626 43.478 12.91 0.00 42.43 3.53
1295 1330 3.544048 CGTGATGCATATTCACACGTTCC 60.544 47.826 22.67 0.00 45.57 3.62
1296 1331 3.597324 CGTGATGCATATTCACACGTTC 58.403 45.455 22.67 0.00 45.57 3.95
1297 1332 3.656651 CGTGATGCATATTCACACGTT 57.343 42.857 22.67 0.00 45.57 3.99
1340 1375 0.614812 TAAGCACAGCAGAGCATCCA 59.385 50.000 0.85 0.00 33.66 3.41
1341 1376 1.872313 GATAAGCACAGCAGAGCATCC 59.128 52.381 0.85 0.00 33.66 3.51
1363 1399 3.096852 ACAGAACATCCAGTATCACCGA 58.903 45.455 0.00 0.00 0.00 4.69
1364 1400 3.119137 TCACAGAACATCCAGTATCACCG 60.119 47.826 0.00 0.00 0.00 4.94
1365 1401 4.471904 TCACAGAACATCCAGTATCACC 57.528 45.455 0.00 0.00 0.00 4.02
1396 1434 8.500773 CAACGTACAATTTACTTGTCCTACAAT 58.499 33.333 0.00 0.00 44.99 2.71
1794 1857 6.015772 ACCTATTATTCACACCAAACCAACAC 60.016 38.462 0.00 0.00 0.00 3.32
1839 1902 3.213206 AGCAAACAACTGACATGGAGA 57.787 42.857 0.00 0.00 0.00 3.71
2125 2547 7.900782 ATGTAACTCGTGCAGTAAAAAGTAT 57.099 32.000 0.00 0.00 32.30 2.12
2319 2741 2.906691 TTTTGGCCACCACTGAAATG 57.093 45.000 3.88 0.00 30.78 2.32
2472 2903 3.633525 GGCTAAACAGGATCAATGCATCA 59.366 43.478 0.00 0.00 0.00 3.07
2538 2969 7.214467 TCCACAACTGAAGGAATTTATTGAC 57.786 36.000 0.00 0.00 0.00 3.18
2654 3173 5.964758 TCAAAGGCATGTCATTGGAAATAC 58.035 37.500 14.69 0.00 0.00 1.89
2661 3180 5.987777 TTTGTTTCAAAGGCATGTCATTG 57.012 34.783 8.94 8.94 0.00 2.82
2887 3406 4.115516 CGATTCACATGAGGAACCTGTAG 58.884 47.826 0.00 0.00 0.00 2.74
3219 3744 9.563748 AAGGAGATACTCTAGTGTACTGAATAC 57.436 37.037 6.80 0.00 0.00 1.89
3273 3798 2.584791 GCACAAAGCAAATACGGACAG 58.415 47.619 0.00 0.00 44.79 3.51
3285 3810 0.239347 CACTGGCTACTGCACAAAGC 59.761 55.000 2.29 2.29 45.96 3.51
3286 3811 0.877071 CCACTGGCTACTGCACAAAG 59.123 55.000 0.00 0.00 41.91 2.77
3287 3812 0.472044 TCCACTGGCTACTGCACAAA 59.528 50.000 0.00 0.00 41.91 2.83
3297 3858 4.561752 AGAGAATATTAGGTCCACTGGCT 58.438 43.478 0.00 0.00 0.00 4.75
3343 3916 7.362920 GGCTTTTTATTCATAGGAGCAGTTTCA 60.363 37.037 0.00 0.00 0.00 2.69
3344 3917 6.975197 GGCTTTTTATTCATAGGAGCAGTTTC 59.025 38.462 0.00 0.00 0.00 2.78
3345 3918 6.404734 CGGCTTTTTATTCATAGGAGCAGTTT 60.405 38.462 0.00 0.00 0.00 2.66
3346 3919 5.066505 CGGCTTTTTATTCATAGGAGCAGTT 59.933 40.000 0.00 0.00 0.00 3.16
3347 3920 4.576463 CGGCTTTTTATTCATAGGAGCAGT 59.424 41.667 0.00 0.00 0.00 4.40
3348 3921 4.023707 CCGGCTTTTTATTCATAGGAGCAG 60.024 45.833 0.00 0.00 0.00 4.24
3349 3922 3.882888 CCGGCTTTTTATTCATAGGAGCA 59.117 43.478 0.00 0.00 0.00 4.26
3350 3923 3.883489 ACCGGCTTTTTATTCATAGGAGC 59.117 43.478 0.00 0.00 0.00 4.70
3351 3924 4.261197 GCACCGGCTTTTTATTCATAGGAG 60.261 45.833 0.00 0.00 36.96 3.69
3352 3925 3.630312 GCACCGGCTTTTTATTCATAGGA 59.370 43.478 0.00 0.00 36.96 2.94
3370 3943 2.781681 ATAACAGTGGTAGGTGCACC 57.218 50.000 29.22 29.22 39.20 5.01
3371 3944 3.118738 AGCTATAACAGTGGTAGGTGCAC 60.119 47.826 8.80 8.80 0.00 4.57
3419 3992 2.861763 TAGTTCACGTGTACGAGTCG 57.138 50.000 16.51 11.85 43.02 4.18
3420 3993 4.075763 ACATAGTTCACGTGTACGAGTC 57.924 45.455 16.51 0.00 43.02 3.36
3424 3997 3.850273 GGAAGACATAGTTCACGTGTACG 59.150 47.826 16.51 6.31 46.33 3.67
3427 4000 4.537135 ATGGAAGACATAGTTCACGTGT 57.463 40.909 16.51 0.00 38.26 4.49
3432 4005 4.163458 GTGGGGTATGGAAGACATAGTTCA 59.837 45.833 0.00 0.00 42.50 3.18
3440 4013 0.179081 GCTCGTGGGGTATGGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
3450 4023 1.688735 TCAATATCAGAGCTCGTGGGG 59.311 52.381 8.37 0.00 0.00 4.96
3456 4029 6.932356 TGGACAAATTCAATATCAGAGCTC 57.068 37.500 5.27 5.27 0.00 4.09
3593 4166 2.078665 ATCCCATGGCTAACGGGCT 61.079 57.895 6.09 0.00 40.05 5.19
3597 4171 0.464373 AGTGCATCCCATGGCTAACG 60.464 55.000 6.09 0.00 0.00 3.18
3625 4199 3.242739 GCAGACACAAATGAACGACACTT 60.243 43.478 0.00 0.00 0.00 3.16
3631 4229 0.110238 CCGGCAGACACAAATGAACG 60.110 55.000 0.00 0.00 0.00 3.95
3781 4447 5.036916 ACCAATAGTCAAGAGGGGTCAATA 58.963 41.667 0.00 0.00 0.00 1.90
3809 4475 1.168407 CCTCCACACTGCAACACCAG 61.168 60.000 0.00 0.00 38.78 4.00
3837 4596 7.552687 TCAATTTATAGCATCCTGAAAAGACGT 59.447 33.333 0.00 0.00 0.00 4.34
3839 4598 7.859875 GCTCAATTTATAGCATCCTGAAAAGAC 59.140 37.037 0.00 0.00 38.63 3.01
3873 4632 2.461897 AGTAAAAACACAACACGGCG 57.538 45.000 4.80 4.80 0.00 6.46
3957 4726 1.337167 GGCAACAAAACTCATCTGCCC 60.337 52.381 0.00 0.00 42.86 5.36
3992 4763 0.673644 ACCACCGAAGCTTCCATTCG 60.674 55.000 20.62 9.32 46.94 3.34
4013 4784 9.745880 GTTCCGAGAGTAATGAAGTAATAATCA 57.254 33.333 0.00 0.00 0.00 2.57
4024 4795 4.451096 GCAACTTTGTTCCGAGAGTAATGA 59.549 41.667 0.00 0.00 0.00 2.57
4108 4913 6.567687 TTTACATTTCATCATGTGAACCGT 57.432 33.333 9.36 10.99 46.14 4.83
4183 4988 2.450479 GAAGACCCTGTCACCCACGG 62.450 65.000 0.00 0.00 34.60 4.94
4184 4989 1.004918 GAAGACCCTGTCACCCACG 60.005 63.158 0.00 0.00 34.60 4.94
4185 4990 1.375326 GGAAGACCCTGTCACCCAC 59.625 63.158 0.00 0.00 34.60 4.61
4186 4991 3.900888 GGAAGACCCTGTCACCCA 58.099 61.111 0.00 0.00 34.60 4.51
4196 5001 0.251653 GGGACAAAAGGGGGAAGACC 60.252 60.000 0.00 0.00 39.11 3.85
4197 5002 0.778083 AGGGACAAAAGGGGGAAGAC 59.222 55.000 0.00 0.00 0.00 3.01
4198 5003 1.073098 GAGGGACAAAAGGGGGAAGA 58.927 55.000 0.00 0.00 0.00 2.87
4199 5004 0.322546 CGAGGGACAAAAGGGGGAAG 60.323 60.000 0.00 0.00 0.00 3.46
4200 5005 1.765074 CGAGGGACAAAAGGGGGAA 59.235 57.895 0.00 0.00 0.00 3.97
4201 5006 2.902457 GCGAGGGACAAAAGGGGGA 61.902 63.158 0.00 0.00 0.00 4.81
4202 5007 2.361230 GCGAGGGACAAAAGGGGG 60.361 66.667 0.00 0.00 0.00 5.40
4203 5008 2.746277 CGCGAGGGACAAAAGGGG 60.746 66.667 0.00 0.00 0.00 4.79
4234 5039 3.292159 AACAAAGAACCCCGCCGC 61.292 61.111 0.00 0.00 0.00 6.53
4235 5040 1.730451 AACAACAAAGAACCCCGCCG 61.730 55.000 0.00 0.00 0.00 6.46
4236 5041 0.249280 CAACAACAAAGAACCCCGCC 60.249 55.000 0.00 0.00 0.00 6.13
4237 5042 0.458260 ACAACAACAAAGAACCCCGC 59.542 50.000 0.00 0.00 0.00 6.13
4238 5043 2.946990 ACTACAACAACAAAGAACCCCG 59.053 45.455 0.00 0.00 0.00 5.73
4239 5044 3.067601 CCACTACAACAACAAAGAACCCC 59.932 47.826 0.00 0.00 0.00 4.95
4240 5045 3.067601 CCCACTACAACAACAAAGAACCC 59.932 47.826 0.00 0.00 0.00 4.11
4241 5046 3.697542 ACCCACTACAACAACAAAGAACC 59.302 43.478 0.00 0.00 0.00 3.62
4242 5047 4.396790 TCACCCACTACAACAACAAAGAAC 59.603 41.667 0.00 0.00 0.00 3.01
4243 5048 4.590918 TCACCCACTACAACAACAAAGAA 58.409 39.130 0.00 0.00 0.00 2.52
4244 5049 4.223556 TCACCCACTACAACAACAAAGA 57.776 40.909 0.00 0.00 0.00 2.52
4245 5050 4.821805 AGATCACCCACTACAACAACAAAG 59.178 41.667 0.00 0.00 0.00 2.77
4246 5051 4.578516 CAGATCACCCACTACAACAACAAA 59.421 41.667 0.00 0.00 0.00 2.83
4247 5052 4.133820 CAGATCACCCACTACAACAACAA 58.866 43.478 0.00 0.00 0.00 2.83
4248 5053 3.738982 CAGATCACCCACTACAACAACA 58.261 45.455 0.00 0.00 0.00 3.33
4249 5054 2.484264 GCAGATCACCCACTACAACAAC 59.516 50.000 0.00 0.00 0.00 3.32
4250 5055 2.371841 AGCAGATCACCCACTACAACAA 59.628 45.455 0.00 0.00 0.00 2.83
4251 5056 1.977854 AGCAGATCACCCACTACAACA 59.022 47.619 0.00 0.00 0.00 3.33
4252 5057 2.770164 AGCAGATCACCCACTACAAC 57.230 50.000 0.00 0.00 0.00 3.32
4253 5058 2.766263 CCTAGCAGATCACCCACTACAA 59.234 50.000 0.00 0.00 0.00 2.41
4254 5059 2.388735 CCTAGCAGATCACCCACTACA 58.611 52.381 0.00 0.00 0.00 2.74
4255 5060 1.069358 GCCTAGCAGATCACCCACTAC 59.931 57.143 0.00 0.00 0.00 2.73
4256 5061 1.342975 TGCCTAGCAGATCACCCACTA 60.343 52.381 0.00 0.00 33.32 2.74
4257 5062 0.618680 TGCCTAGCAGATCACCCACT 60.619 55.000 0.00 0.00 33.32 4.00
4258 5063 1.907739 TGCCTAGCAGATCACCCAC 59.092 57.895 0.00 0.00 33.32 4.61
4259 5064 4.478531 TGCCTAGCAGATCACCCA 57.521 55.556 0.00 0.00 33.32 4.51
4270 5075 3.188786 GACAACGCCGCTGCCTAG 61.189 66.667 0.00 0.00 0.00 3.02
4275 5080 4.368808 CCAACGACAACGCCGCTG 62.369 66.667 0.00 0.00 43.96 5.18
4305 5110 1.083401 CGATAAATCGCACCGCTGC 60.083 57.895 0.00 0.00 43.84 5.25
4315 5120 0.232303 CAAGCGGGCGTCGATAAATC 59.768 55.000 0.00 0.00 42.43 2.17
4316 5121 1.157870 CCAAGCGGGCGTCGATAAAT 61.158 55.000 0.00 0.00 42.43 1.40
4317 5122 1.812093 CCAAGCGGGCGTCGATAAA 60.812 57.895 0.00 0.00 42.43 1.40
4318 5123 2.202824 CCAAGCGGGCGTCGATAA 60.203 61.111 0.00 0.00 42.43 1.75
4327 5132 0.605589 CTAGATCTAGGCCAAGCGGG 59.394 60.000 20.37 0.00 40.85 6.13
4328 5133 0.605589 CCTAGATCTAGGCCAAGCGG 59.394 60.000 31.21 10.46 45.36 5.52
4337 5142 1.830477 GCAGATGGGGCCTAGATCTAG 59.170 57.143 21.04 21.04 0.00 2.43
4338 5143 1.892769 CGCAGATGGGGCCTAGATCTA 60.893 57.143 0.84 1.69 0.00 1.98
4339 5144 1.190833 CGCAGATGGGGCCTAGATCT 61.191 60.000 0.84 0.00 0.00 2.75
4340 5145 1.294780 CGCAGATGGGGCCTAGATC 59.705 63.158 0.84 2.98 0.00 2.75
4341 5146 1.460305 ACGCAGATGGGGCCTAGAT 60.460 57.895 0.84 0.00 0.00 1.98
4342 5147 2.041922 ACGCAGATGGGGCCTAGA 60.042 61.111 0.84 0.00 0.00 2.43
4343 5148 0.827925 TAGACGCAGATGGGGCCTAG 60.828 60.000 0.84 0.00 36.54 3.02
4344 5149 0.827925 CTAGACGCAGATGGGGCCTA 60.828 60.000 0.84 0.00 36.54 3.93
4345 5150 2.041922 TAGACGCAGATGGGGCCT 60.042 61.111 0.84 0.00 36.54 5.19
4346 5151 2.423446 CTAGACGCAGATGGGGCC 59.577 66.667 0.00 0.00 36.54 5.80
4347 5152 1.113517 TACCTAGACGCAGATGGGGC 61.114 60.000 1.78 0.00 36.06 5.80
4348 5153 0.962489 CTACCTAGACGCAGATGGGG 59.038 60.000 1.78 0.00 0.00 4.96
4349 5154 0.962489 CCTACCTAGACGCAGATGGG 59.038 60.000 0.00 0.00 0.00 4.00
4350 5155 0.315568 GCCTACCTAGACGCAGATGG 59.684 60.000 0.00 0.00 0.00 3.51
4351 5156 1.323412 AGCCTACCTAGACGCAGATG 58.677 55.000 0.00 0.00 0.00 2.90
4352 5157 2.785562 CTAGCCTACCTAGACGCAGAT 58.214 52.381 0.00 0.00 45.30 2.90
4353 5158 1.814634 GCTAGCCTACCTAGACGCAGA 60.815 57.143 2.29 0.00 45.30 4.26
4354 5159 0.594110 GCTAGCCTACCTAGACGCAG 59.406 60.000 2.29 0.00 45.30 5.18
4355 5160 1.164662 CGCTAGCCTACCTAGACGCA 61.165 60.000 9.66 0.00 45.30 5.24
4356 5161 1.575423 CGCTAGCCTACCTAGACGC 59.425 63.158 9.66 0.00 45.30 5.19
4357 5162 0.534652 ACCGCTAGCCTACCTAGACG 60.535 60.000 9.66 4.89 45.30 4.18
4358 5163 0.953003 CACCGCTAGCCTACCTAGAC 59.047 60.000 9.66 0.00 45.30 2.59
4359 5164 0.178998 CCACCGCTAGCCTACCTAGA 60.179 60.000 9.66 0.00 45.30 2.43
4360 5165 1.179814 CCCACCGCTAGCCTACCTAG 61.180 65.000 9.66 0.00 45.26 3.02
4361 5166 1.152610 CCCACCGCTAGCCTACCTA 60.153 63.158 9.66 0.00 0.00 3.08
4362 5167 2.444140 CCCACCGCTAGCCTACCT 60.444 66.667 9.66 0.00 0.00 3.08
4363 5168 3.547513 CCCCACCGCTAGCCTACC 61.548 72.222 9.66 0.00 0.00 3.18
4364 5169 3.547513 CCCCCACCGCTAGCCTAC 61.548 72.222 9.66 0.00 0.00 3.18
4365 5170 3.751049 CTCCCCCACCGCTAGCCTA 62.751 68.421 9.66 0.00 0.00 3.93
4369 5174 3.155167 GACCTCCCCCACCGCTAG 61.155 72.222 0.00 0.00 0.00 3.42
4397 5202 2.935481 TCCCCTGCCTCTTGGTGG 60.935 66.667 0.00 0.00 35.27 4.61
4398 5203 2.673523 CTCCCCTGCCTCTTGGTG 59.326 66.667 0.00 0.00 35.27 4.17
4399 5204 3.334054 GCTCCCCTGCCTCTTGGT 61.334 66.667 0.00 0.00 35.27 3.67
4400 5205 4.479993 CGCTCCCCTGCCTCTTGG 62.480 72.222 0.00 0.00 0.00 3.61
4401 5206 4.479993 CCGCTCCCCTGCCTCTTG 62.480 72.222 0.00 0.00 0.00 3.02
4402 5207 4.722535 TCCGCTCCCCTGCCTCTT 62.723 66.667 0.00 0.00 0.00 2.85
4405 5210 4.488911 ATCTCCGCTCCCCTGCCT 62.489 66.667 0.00 0.00 0.00 4.75
4406 5211 4.247380 CATCTCCGCTCCCCTGCC 62.247 72.222 0.00 0.00 0.00 4.85
4407 5212 4.247380 CCATCTCCGCTCCCCTGC 62.247 72.222 0.00 0.00 0.00 4.85
4408 5213 3.554342 CCCATCTCCGCTCCCCTG 61.554 72.222 0.00 0.00 0.00 4.45
4418 5223 4.489771 CACCCACCCGCCCATCTC 62.490 72.222 0.00 0.00 0.00 2.75
4420 5225 4.360405 AACACCCACCCGCCCATC 62.360 66.667 0.00 0.00 0.00 3.51
4421 5226 4.676951 CAACACCCACCCGCCCAT 62.677 66.667 0.00 0.00 0.00 4.00
4426 5231 3.601685 GTTGCCAACACCCACCCG 61.602 66.667 1.91 0.00 0.00 5.28
4427 5232 3.601685 CGTTGCCAACACCCACCC 61.602 66.667 8.51 0.00 0.00 4.61
4428 5233 4.279043 GCGTTGCCAACACCCACC 62.279 66.667 8.51 0.00 0.00 4.61
4429 5234 3.216292 AGCGTTGCCAACACCCAC 61.216 61.111 8.51 0.00 0.00 4.61
4430 5235 3.215568 CAGCGTTGCCAACACCCA 61.216 61.111 8.51 0.00 0.00 4.51
4431 5236 3.977244 CCAGCGTTGCCAACACCC 61.977 66.667 8.51 0.00 0.00 4.61
4432 5237 4.645921 GCCAGCGTTGCCAACACC 62.646 66.667 8.51 0.00 0.00 4.16
4433 5238 4.980903 CGCCAGCGTTGCCAACAC 62.981 66.667 8.51 0.00 34.35 3.32
4449 5254 3.108289 CACTGCAGCAGGTCGACG 61.108 66.667 26.38 0.27 35.51 5.12
4450 5255 2.029666 ACACTGCAGCAGGTCGAC 59.970 61.111 26.38 7.13 35.51 4.20
4451 5256 2.029518 CACACTGCAGCAGGTCGA 59.970 61.111 26.38 0.00 35.51 4.20
4452 5257 3.046087 CCACACTGCAGCAGGTCG 61.046 66.667 26.38 16.01 35.51 4.79
4453 5258 3.360340 GCCACACTGCAGCAGGTC 61.360 66.667 26.38 7.08 35.51 3.85
4454 5259 4.962836 GGCCACACTGCAGCAGGT 62.963 66.667 26.38 17.51 35.51 4.00
4476 5281 4.796495 ATCGGACCCGCAAAGCCC 62.796 66.667 3.13 0.00 39.59 5.19
4477 5282 2.340328 AAATCGGACCCGCAAAGCC 61.340 57.895 3.13 0.00 39.59 4.35
4478 5283 1.154035 CAAATCGGACCCGCAAAGC 60.154 57.895 3.13 0.00 39.59 3.51
4479 5284 1.506262 CCAAATCGGACCCGCAAAG 59.494 57.895 3.13 0.00 39.59 2.77
4480 5285 1.974343 CCCAAATCGGACCCGCAAA 60.974 57.895 3.13 0.00 39.59 3.68
4481 5286 2.360600 CCCAAATCGGACCCGCAA 60.361 61.111 3.13 0.00 39.59 4.85
4484 5289 2.660258 CTAGGCCCAAATCGGACCCG 62.660 65.000 0.00 1.31 36.56 5.28
4485 5290 1.148498 CTAGGCCCAAATCGGACCC 59.852 63.158 0.00 0.00 36.56 4.46
4486 5291 1.526225 GCTAGGCCCAAATCGGACC 60.526 63.158 0.00 0.00 36.56 4.46
4487 5292 1.526225 GGCTAGGCCCAAATCGGAC 60.526 63.158 4.61 0.00 44.06 4.79
4488 5293 2.915869 GGCTAGGCCCAAATCGGA 59.084 61.111 4.61 0.00 44.06 4.55
4504 5309 4.875713 GCATACCAGGCCACCCGG 62.876 72.222 5.01 1.59 35.76 5.73
4511 5316 0.967380 AGCAACAAGGCATACCAGGC 60.967 55.000 0.00 0.00 39.06 4.85
4512 5317 0.813184 CAGCAACAAGGCATACCAGG 59.187 55.000 0.00 0.00 39.06 4.45
4513 5318 1.200716 CACAGCAACAAGGCATACCAG 59.799 52.381 0.00 0.00 39.06 4.00
4514 5319 1.246649 CACAGCAACAAGGCATACCA 58.753 50.000 0.00 0.00 39.06 3.25
4515 5320 1.200020 GACACAGCAACAAGGCATACC 59.800 52.381 0.00 0.00 35.83 2.73
4516 5321 1.200020 GGACACAGCAACAAGGCATAC 59.800 52.381 0.00 0.00 35.83 2.39
4517 5322 1.533625 GGACACAGCAACAAGGCATA 58.466 50.000 0.00 0.00 35.83 3.14
4518 5323 1.518056 CGGACACAGCAACAAGGCAT 61.518 55.000 0.00 0.00 35.83 4.40
4519 5324 2.186160 CGGACACAGCAACAAGGCA 61.186 57.895 0.00 0.00 35.83 4.75
4520 5325 2.639286 CGGACACAGCAACAAGGC 59.361 61.111 0.00 0.00 0.00 4.35
4521 5326 0.606401 ATCCGGACACAGCAACAAGG 60.606 55.000 6.12 0.00 0.00 3.61
4522 5327 0.518636 CATCCGGACACAGCAACAAG 59.481 55.000 6.12 0.00 0.00 3.16
4523 5328 0.888736 CCATCCGGACACAGCAACAA 60.889 55.000 6.12 0.00 0.00 2.83
4524 5329 1.302431 CCATCCGGACACAGCAACA 60.302 57.895 6.12 0.00 0.00 3.33
4525 5330 2.690778 GCCATCCGGACACAGCAAC 61.691 63.158 6.12 0.00 0.00 4.17
4526 5331 2.359850 GCCATCCGGACACAGCAA 60.360 61.111 6.12 0.00 0.00 3.91
4527 5332 4.758251 CGCCATCCGGACACAGCA 62.758 66.667 6.12 0.00 0.00 4.41
4556 5361 3.435186 GAGGCCTGTGCTTTCGGC 61.435 66.667 12.00 0.00 43.03 5.54
4557 5362 2.747855 GGAGGCCTGTGCTTTCGG 60.748 66.667 12.00 0.00 37.74 4.30
4558 5363 2.747855 GGGAGGCCTGTGCTTTCG 60.748 66.667 12.00 0.00 37.74 3.46
4559 5364 2.747855 CGGGAGGCCTGTGCTTTC 60.748 66.667 12.00 0.00 37.74 2.62
4571 5376 4.619227 ACCACCAACGTGCGGGAG 62.619 66.667 8.98 1.12 38.79 4.30
4572 5377 4.920112 CACCACCAACGTGCGGGA 62.920 66.667 8.98 0.00 38.79 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.