Multiple sequence alignment - TraesCS5A01G104400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G104400 chr5A 100.000 2698 0 0 1 2698 168435509 168438206 0.000000e+00 4983.0
1 TraesCS5A01G104400 chr5A 94.500 200 11 0 1782 1981 168562222 168562421 2.610000e-80 309.0
2 TraesCS5A01G104400 chr5A 97.740 177 4 0 2482 2658 4844357 4844181 3.370000e-79 305.0
3 TraesCS5A01G104400 chr5A 98.824 170 2 0 2485 2654 361454797 361454628 1.210000e-78 303.0
4 TraesCS5A01G104400 chr5B 93.882 1700 83 9 807 2491 149237384 149239077 0.000000e+00 2543.0
5 TraesCS5A01G104400 chr5B 92.333 613 40 5 810 1417 148995362 148994752 0.000000e+00 865.0
6 TraesCS5A01G104400 chr5B 91.507 471 28 6 1414 1883 148990548 148990089 2.930000e-179 638.0
7 TraesCS5A01G104400 chr5B 94.357 319 13 4 26 343 148997317 148997003 4.040000e-133 484.0
8 TraesCS5A01G104400 chr5B 93.724 239 8 4 341 578 148995583 148995351 4.270000e-93 351.0
9 TraesCS5A01G104400 chr5B 91.358 81 1 4 499 577 149237321 149237397 3.670000e-19 106.0
10 TraesCS5A01G104400 chr5B 100.000 31 0 0 440 470 217623416 217623386 1.040000e-04 58.4
11 TraesCS5A01G104400 chr5D 93.951 1025 50 4 813 1827 136452612 136451590 0.000000e+00 1539.0
12 TraesCS5A01G104400 chr5D 95.100 551 21 4 26 575 136453152 136452607 0.000000e+00 863.0
13 TraesCS5A01G104400 chr5D 88.115 589 24 17 1925 2491 136451079 136450515 0.000000e+00 658.0
14 TraesCS5A01G104400 chr5D 91.040 346 23 5 1777 2117 136451588 136451246 6.810000e-126 460.0
15 TraesCS5A01G104400 chr5D 80.597 201 9 14 1925 2120 136451249 136451074 7.840000e-26 128.0
16 TraesCS5A01G104400 chr7A 89.637 386 28 5 26 401 732137728 732137345 5.220000e-132 481.0
17 TraesCS5A01G104400 chr7A 99.156 237 2 0 574 810 301324665 301324901 6.900000e-116 427.0
18 TraesCS5A01G104400 chr7A 76.305 249 52 6 227 472 670020660 670020904 2.820000e-25 126.0
19 TraesCS5A01G104400 chr7A 95.918 49 2 0 430 478 732137346 732137298 2.230000e-11 80.5
20 TraesCS5A01G104400 chr3B 99.574 235 1 0 575 809 125573839 125573605 1.920000e-116 429.0
21 TraesCS5A01G104400 chr3B 99.153 236 2 0 574 809 6559692 6559927 2.480000e-115 425.0
22 TraesCS5A01G104400 chr3B 97.765 179 2 2 2474 2651 45447710 45447533 9.380000e-80 307.0
23 TraesCS5A01G104400 chr4A 99.156 237 2 0 573 809 698333616 698333380 6.900000e-116 427.0
24 TraesCS5A01G104400 chr4A 79.506 405 48 14 85 476 693587018 693586636 3.450000e-64 255.0
25 TraesCS5A01G104400 chr2A 99.156 237 2 0 573 809 461309924 461309688 6.900000e-116 427.0
26 TraesCS5A01G104400 chr2A 98.837 172 2 0 2480 2651 478761350 478761521 9.380000e-80 307.0
27 TraesCS5A01G104400 chrUn 99.153 236 2 0 574 809 35371364 35371129 2.480000e-115 425.0
28 TraesCS5A01G104400 chr2B 99.153 236 2 0 574 809 304653 304418 2.480000e-115 425.0
29 TraesCS5A01G104400 chr2B 89.381 113 12 0 252 364 789521258 789521146 2.800000e-30 143.0
30 TraesCS5A01G104400 chr1B 96.813 251 5 3 571 819 577212335 577212086 1.490000e-112 416.0
31 TraesCS5A01G104400 chr1B 96.414 251 6 3 571 819 577276887 577276638 6.950000e-111 411.0
32 TraesCS5A01G104400 chr1B 89.241 158 15 2 282 438 666644148 666644304 2.120000e-46 196.0
33 TraesCS5A01G104400 chr1A 99.412 170 1 0 2486 2655 368368490 368368659 2.610000e-80 309.0
34 TraesCS5A01G104400 chr1A 99.405 168 1 0 2485 2652 322177192 322177359 3.370000e-79 305.0
35 TraesCS5A01G104400 chr1A 98.256 172 3 0 2484 2655 582764908 582765079 4.370000e-78 302.0
36 TraesCS5A01G104400 chr3A 96.237 186 5 2 2471 2654 1759682 1759867 1.210000e-78 303.0
37 TraesCS5A01G104400 chr6A 94.444 198 7 4 2457 2652 78517510 78517705 4.370000e-78 302.0
38 TraesCS5A01G104400 chr7D 87.281 228 26 3 247 473 178856285 178856510 9.580000e-65 257.0
39 TraesCS5A01G104400 chr6B 78.537 410 52 21 85 476 687740876 687740485 1.250000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G104400 chr5A 168435509 168438206 2697 False 4983.000000 4983 100.000000 1 2698 1 chr5A.!!$F1 2697
1 TraesCS5A01G104400 chr5B 149237321 149239077 1756 False 1324.500000 2543 92.620000 499 2491 2 chr5B.!!$F1 1992
2 TraesCS5A01G104400 chr5B 148994752 148997317 2565 True 566.666667 865 93.471333 26 1417 3 chr5B.!!$R3 1391
3 TraesCS5A01G104400 chr5D 136450515 136453152 2637 True 729.600000 1539 89.760600 26 2491 5 chr5D.!!$R1 2465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 2023 0.315886 GGGTTTTGAAATTCGGCCGT 59.684 50.0 27.15 5.04 0.00 5.68 F
1106 2547 0.696501 ACGGGCTTGTCCAGGTTATT 59.303 50.0 0.00 0.00 36.21 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 2917 0.833949 TGCATAAGTGGGTCCGCATA 59.166 50.000 3.23 0.00 0.00 3.14 R
1923 3422 2.613691 GGAAGGCAGAAAACATGCATG 58.386 47.619 25.09 25.09 45.68 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.849322 AAGTGTTACAAGGGGAAACATAAAT 57.151 32.000 0.00 0.00 35.72 1.40
40 41 9.554724 GAAACATAAATTAAATTGCGAGACTCA 57.445 29.630 2.82 0.00 0.00 3.41
65 66 6.325919 CAATATTTTGCCCTAAATCCGCTA 57.674 37.500 0.00 0.00 0.00 4.26
129 130 3.188786 CAGCTACCACGCGAAGGC 61.189 66.667 15.93 9.63 34.40 4.35
216 218 8.233868 GCGCCACATGTTCATAATACAAATATA 58.766 33.333 0.00 0.00 0.00 0.86
377 1801 5.518812 TGTATTGCAATTTAATAGCCAGCG 58.481 37.500 18.75 0.00 0.00 5.18
389 1813 1.704641 AGCCAGCGTATATCCACAGA 58.295 50.000 0.00 0.00 0.00 3.41
438 1862 5.632190 TGCTATAGTGGATGGCACAGATTTT 60.632 40.000 0.84 0.00 46.21 1.82
470 1896 4.877619 TCGGCCACCAAAACGCCA 62.878 61.111 2.24 0.00 43.17 5.69
471 1897 4.639171 CGGCCACCAAAACGCCAC 62.639 66.667 2.24 0.00 43.17 5.01
509 1936 8.651588 CCATGCGATCTTTGTAGAAGATATAAC 58.348 37.037 1.56 0.00 37.14 1.89
510 1937 9.416794 CATGCGATCTTTGTAGAAGATATAACT 57.583 33.333 1.56 0.00 37.14 2.24
511 1938 8.803201 TGCGATCTTTGTAGAAGATATAACTG 57.197 34.615 1.56 0.00 37.14 3.16
531 1958 2.632512 TGCAGGTTCCATCGCTATATGA 59.367 45.455 0.00 0.00 0.00 2.15
576 2004 0.471617 AATGGCCTAGCTAGCACCAG 59.528 55.000 27.71 10.55 33.40 4.00
577 2005 1.414061 ATGGCCTAGCTAGCACCAGG 61.414 60.000 27.71 19.66 33.40 4.45
578 2006 2.812619 GGCCTAGCTAGCACCAGGG 61.813 68.421 23.67 15.71 0.00 4.45
579 2007 2.066999 GCCTAGCTAGCACCAGGGT 61.067 63.158 23.67 4.28 0.00 4.34
580 2008 1.627297 GCCTAGCTAGCACCAGGGTT 61.627 60.000 23.67 3.62 0.00 4.11
581 2009 0.912486 CCTAGCTAGCACCAGGGTTT 59.088 55.000 18.83 0.00 0.00 3.27
582 2010 1.282157 CCTAGCTAGCACCAGGGTTTT 59.718 52.381 18.83 0.00 0.00 2.43
583 2011 2.359900 CTAGCTAGCACCAGGGTTTTG 58.640 52.381 18.83 0.00 0.00 2.44
584 2012 0.771127 AGCTAGCACCAGGGTTTTGA 59.229 50.000 18.83 0.00 0.00 2.69
585 2013 1.144913 AGCTAGCACCAGGGTTTTGAA 59.855 47.619 18.83 0.00 0.00 2.69
586 2014 1.960689 GCTAGCACCAGGGTTTTGAAA 59.039 47.619 10.63 0.00 0.00 2.69
587 2015 2.562738 GCTAGCACCAGGGTTTTGAAAT 59.437 45.455 10.63 0.00 0.00 2.17
588 2016 3.006859 GCTAGCACCAGGGTTTTGAAATT 59.993 43.478 10.63 0.00 0.00 1.82
589 2017 3.751479 AGCACCAGGGTTTTGAAATTC 57.249 42.857 0.00 0.00 0.00 2.17
590 2018 2.035832 AGCACCAGGGTTTTGAAATTCG 59.964 45.455 0.00 0.00 0.00 3.34
591 2019 2.866065 GCACCAGGGTTTTGAAATTCGG 60.866 50.000 0.00 0.00 0.00 4.30
592 2020 1.343142 ACCAGGGTTTTGAAATTCGGC 59.657 47.619 0.00 0.00 0.00 5.54
593 2021 1.337728 CCAGGGTTTTGAAATTCGGCC 60.338 52.381 0.00 0.00 0.00 6.13
594 2022 0.601057 AGGGTTTTGAAATTCGGCCG 59.399 50.000 22.12 22.12 0.00 6.13
595 2023 0.315886 GGGTTTTGAAATTCGGCCGT 59.684 50.000 27.15 5.04 0.00 5.68
596 2024 1.540707 GGGTTTTGAAATTCGGCCGTA 59.459 47.619 27.15 17.72 0.00 4.02
597 2025 2.030096 GGGTTTTGAAATTCGGCCGTAA 60.030 45.455 27.15 18.22 0.00 3.18
598 2026 3.552478 GGGTTTTGAAATTCGGCCGTAAA 60.552 43.478 27.15 14.07 0.00 2.01
599 2027 4.049869 GGTTTTGAAATTCGGCCGTAAAA 58.950 39.130 27.15 18.71 0.00 1.52
600 2028 4.507021 GGTTTTGAAATTCGGCCGTAAAAA 59.493 37.500 27.15 15.70 0.00 1.94
617 2045 3.885724 AAAAATGGATTTCGGCCGAAT 57.114 38.095 38.89 27.72 33.79 3.34
618 2046 3.885724 AAAATGGATTTCGGCCGAATT 57.114 38.095 38.89 34.04 33.79 2.17
619 2047 3.885724 AAATGGATTTCGGCCGAATTT 57.114 38.095 38.89 30.43 33.79 1.82
620 2048 3.436700 AATGGATTTCGGCCGAATTTC 57.563 42.857 38.89 33.33 33.79 2.17
621 2049 0.730265 TGGATTTCGGCCGAATTTCG 59.270 50.000 38.89 11.81 40.07 3.46
631 2059 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
653 2081 5.608676 GCCTAGGGCGAAATCTATTTTAC 57.391 43.478 11.72 0.00 39.62 2.01
654 2082 4.151867 GCCTAGGGCGAAATCTATTTTACG 59.848 45.833 11.72 0.00 39.62 3.18
655 2083 4.151867 CCTAGGGCGAAATCTATTTTACGC 59.848 45.833 0.00 11.10 40.21 4.42
657 2085 2.899977 GGCGAAATCTATTTTACGCCG 58.100 47.619 18.75 6.86 45.23 6.46
658 2086 2.540931 GGCGAAATCTATTTTACGCCGA 59.459 45.455 18.75 0.00 45.23 5.54
659 2087 3.001533 GGCGAAATCTATTTTACGCCGAA 59.998 43.478 18.75 0.00 45.23 4.30
660 2088 4.494526 GGCGAAATCTATTTTACGCCGAAA 60.495 41.667 18.75 0.00 45.23 3.46
661 2089 5.202640 GCGAAATCTATTTTACGCCGAAAT 58.797 37.500 9.23 0.00 37.62 2.17
662 2090 5.679792 GCGAAATCTATTTTACGCCGAAATT 59.320 36.000 9.23 0.00 37.62 1.82
663 2091 6.343924 GCGAAATCTATTTTACGCCGAAATTG 60.344 38.462 9.23 0.00 37.62 2.32
664 2092 6.140108 CGAAATCTATTTTACGCCGAAATTGG 59.860 38.462 0.00 0.00 0.00 3.16
665 2093 6.445357 AATCTATTTTACGCCGAAATTGGT 57.555 33.333 0.00 0.00 0.00 3.67
666 2094 5.473796 TCTATTTTACGCCGAAATTGGTC 57.526 39.130 0.00 0.00 0.00 4.02
667 2095 4.936411 TCTATTTTACGCCGAAATTGGTCA 59.064 37.500 0.00 0.00 0.00 4.02
668 2096 3.984508 TTTTACGCCGAAATTGGTCAA 57.015 38.095 0.00 0.00 0.00 3.18
669 2097 3.984508 TTTACGCCGAAATTGGTCAAA 57.015 38.095 0.00 0.00 0.00 2.69
670 2098 4.506886 TTTACGCCGAAATTGGTCAAAT 57.493 36.364 0.00 0.00 0.00 2.32
671 2099 4.506886 TTACGCCGAAATTGGTCAAATT 57.493 36.364 0.00 0.00 40.32 1.82
673 2101 3.056304 ACGCCGAAATTGGTCAAATTTG 58.944 40.909 12.15 12.15 46.29 2.32
674 2102 3.243569 ACGCCGAAATTGGTCAAATTTGA 60.244 39.130 16.91 16.91 46.29 2.69
675 2103 3.364621 CGCCGAAATTGGTCAAATTTGAG 59.635 43.478 21.05 7.43 46.29 3.02
676 2104 4.555262 GCCGAAATTGGTCAAATTTGAGA 58.445 39.130 21.05 10.65 46.29 3.27
677 2105 4.987912 GCCGAAATTGGTCAAATTTGAGAA 59.012 37.500 21.05 16.20 46.29 2.87
678 2106 5.465056 GCCGAAATTGGTCAAATTTGAGAAA 59.535 36.000 21.05 17.28 46.29 2.52
679 2107 6.147656 GCCGAAATTGGTCAAATTTGAGAAAT 59.852 34.615 21.05 18.58 46.29 2.17
680 2108 7.307930 GCCGAAATTGGTCAAATTTGAGAAATT 60.308 33.333 21.05 22.40 46.29 1.82
681 2109 8.558700 CCGAAATTGGTCAAATTTGAGAAATTT 58.441 29.630 30.86 30.86 46.29 1.82
682 2110 9.934190 CGAAATTGGTCAAATTTGAGAAATTTT 57.066 25.926 30.89 22.60 46.01 1.82
685 2113 8.750515 ATTGGTCAAATTTGAGAAATTTTGGT 57.249 26.923 21.05 0.80 46.01 3.67
686 2114 7.784633 TGGTCAAATTTGAGAAATTTTGGTC 57.215 32.000 21.05 4.97 46.01 4.02
687 2115 7.334090 TGGTCAAATTTGAGAAATTTTGGTCA 58.666 30.769 21.05 3.51 46.01 4.02
688 2116 7.826252 TGGTCAAATTTGAGAAATTTTGGTCAA 59.174 29.630 21.05 7.23 46.01 3.18
689 2117 8.672815 GGTCAAATTTGAGAAATTTTGGTCAAA 58.327 29.630 21.05 18.75 46.01 2.69
731 2159 2.362169 ATTTGGTCAAATTTCGGCCG 57.638 45.000 22.12 22.12 37.74 6.13
732 2160 1.319541 TTTGGTCAAATTTCGGCCGA 58.680 45.000 27.28 27.28 0.00 5.54
733 2161 1.319541 TTGGTCAAATTTCGGCCGAA 58.680 45.000 35.81 35.81 0.00 4.30
734 2162 1.319541 TGGTCAAATTTCGGCCGAAA 58.680 45.000 44.99 44.99 46.37 3.46
746 2174 4.950654 TCGGCCGAAATTTTTAAAAACG 57.049 36.364 28.99 13.78 0.00 3.60
747 2175 4.604976 TCGGCCGAAATTTTTAAAAACGA 58.395 34.783 28.99 14.06 0.00 3.85
748 2176 4.440431 TCGGCCGAAATTTTTAAAAACGAC 59.560 37.500 28.99 7.56 0.00 4.34
749 2177 4.375205 CGGCCGAAATTTTTAAAAACGACC 60.375 41.667 24.07 14.43 0.00 4.79
750 2178 4.375205 GGCCGAAATTTTTAAAAACGACCG 60.375 41.667 15.35 14.74 0.00 4.79
751 2179 4.440431 GCCGAAATTTTTAAAAACGACCGA 59.560 37.500 15.35 0.00 0.00 4.69
752 2180 5.051841 GCCGAAATTTTTAAAAACGACCGAA 60.052 36.000 15.35 0.00 0.00 4.30
753 2181 6.507614 GCCGAAATTTTTAAAAACGACCGAAA 60.508 34.615 15.35 0.00 0.00 3.46
754 2182 7.557285 CCGAAATTTTTAAAAACGACCGAAAT 58.443 30.769 15.35 0.00 0.00 2.17
755 2183 8.057156 CCGAAATTTTTAAAAACGACCGAAATT 58.943 29.630 15.35 0.63 0.00 1.82
756 2184 9.073266 CGAAATTTTTAAAAACGACCGAAATTC 57.927 29.630 15.35 8.09 0.00 2.17
757 2185 8.959761 AAATTTTTAAAAACGACCGAAATTCG 57.040 26.923 15.35 8.62 42.36 3.34
767 2195 1.934463 CGAAATTCGGCCATCTCGG 59.066 57.895 7.61 0.00 36.00 4.63
786 2214 2.038387 GCCTAGGGCGAGAAAAATCA 57.962 50.000 11.72 0.00 39.62 2.57
787 2215 1.671328 GCCTAGGGCGAGAAAAATCAC 59.329 52.381 11.72 0.00 39.62 3.06
788 2216 2.939640 GCCTAGGGCGAGAAAAATCACA 60.940 50.000 11.72 0.00 39.62 3.58
789 2217 3.343617 CCTAGGGCGAGAAAAATCACAA 58.656 45.455 0.00 0.00 0.00 3.33
790 2218 3.756434 CCTAGGGCGAGAAAAATCACAAA 59.244 43.478 0.00 0.00 0.00 2.83
791 2219 3.643159 AGGGCGAGAAAAATCACAAAC 57.357 42.857 0.00 0.00 0.00 2.93
792 2220 2.296190 AGGGCGAGAAAAATCACAAACC 59.704 45.455 0.00 0.00 0.00 3.27
793 2221 2.315901 GGCGAGAAAAATCACAAACCG 58.684 47.619 0.00 0.00 0.00 4.44
794 2222 2.031508 GGCGAGAAAAATCACAAACCGA 60.032 45.455 0.00 0.00 0.00 4.69
795 2223 3.549221 GGCGAGAAAAATCACAAACCGAA 60.549 43.478 0.00 0.00 0.00 4.30
796 2224 4.039032 GCGAGAAAAATCACAAACCGAAA 58.961 39.130 0.00 0.00 0.00 3.46
797 2225 4.501198 GCGAGAAAAATCACAAACCGAAAA 59.499 37.500 0.00 0.00 0.00 2.29
798 2226 5.174943 GCGAGAAAAATCACAAACCGAAAAT 59.825 36.000 0.00 0.00 0.00 1.82
799 2227 6.613536 GCGAGAAAAATCACAAACCGAAAATC 60.614 38.462 0.00 0.00 0.00 2.17
800 2228 6.416455 CGAGAAAAATCACAAACCGAAAATCA 59.584 34.615 0.00 0.00 0.00 2.57
801 2229 7.043722 CGAGAAAAATCACAAACCGAAAATCAA 60.044 33.333 0.00 0.00 0.00 2.57
802 2230 8.485976 AGAAAAATCACAAACCGAAAATCAAA 57.514 26.923 0.00 0.00 0.00 2.69
803 2231 8.940952 AGAAAAATCACAAACCGAAAATCAAAA 58.059 25.926 0.00 0.00 0.00 2.44
804 2232 8.888332 AAAAATCACAAACCGAAAATCAAAAC 57.112 26.923 0.00 0.00 0.00 2.43
805 2233 5.881637 ATCACAAACCGAAAATCAAAACG 57.118 34.783 0.00 0.00 0.00 3.60
806 2234 3.548268 TCACAAACCGAAAATCAAAACGC 59.452 39.130 0.00 0.00 0.00 4.84
807 2235 3.549873 CACAAACCGAAAATCAAAACGCT 59.450 39.130 0.00 0.00 0.00 5.07
808 2236 3.549873 ACAAACCGAAAATCAAAACGCTG 59.450 39.130 0.00 0.00 0.00 5.18
809 2237 2.415697 ACCGAAAATCAAAACGCTGG 57.584 45.000 0.00 0.00 0.00 4.85
810 2238 1.059942 CCGAAAATCAAAACGCTGGC 58.940 50.000 0.00 0.00 0.00 4.85
811 2239 1.335872 CCGAAAATCAAAACGCTGGCT 60.336 47.619 0.00 0.00 0.00 4.75
812 2240 2.095466 CCGAAAATCAAAACGCTGGCTA 60.095 45.455 0.00 0.00 0.00 3.93
813 2241 3.163594 CGAAAATCAAAACGCTGGCTAG 58.836 45.455 0.00 0.00 0.00 3.42
814 2242 2.636768 AAATCAAAACGCTGGCTAGC 57.363 45.000 12.81 12.81 46.62 3.42
834 2262 0.833834 ACCCAGTGTCAGTGAGGAGG 60.834 60.000 17.35 9.64 0.00 4.30
994 2435 2.593026 CTGAACCCCTAACCTTGCAAA 58.407 47.619 0.00 0.00 0.00 3.68
1016 2457 0.900182 TCCATGAGACCACAGAGCGT 60.900 55.000 0.00 0.00 0.00 5.07
1106 2547 0.696501 ACGGGCTTGTCCAGGTTATT 59.303 50.000 0.00 0.00 36.21 1.40
1174 2615 7.466746 TTCCTGCTGCTTGATTTACTTATTT 57.533 32.000 0.00 0.00 0.00 1.40
1200 2641 9.717994 TTTTGATCCATCCCATGCATATTATAT 57.282 29.630 0.00 0.00 0.00 0.86
1385 2832 8.567948 CAGGTATTTGCGATTCCTAATTAATGT 58.432 33.333 0.00 0.00 0.00 2.71
1470 2917 4.222810 GGGCATTAAGACAGGGTCAAATTT 59.777 41.667 0.00 0.00 34.60 1.82
1511 2958 0.823356 GGCTGGAAACTGTTGGAGCA 60.823 55.000 16.05 0.00 0.00 4.26
1649 3096 6.991938 AGCCTCACAAGAGATTGATATAGAC 58.008 40.000 0.00 0.00 44.98 2.59
1670 3117 2.955881 CGAGGGGGTGGAAGGTGAC 61.956 68.421 0.00 0.00 0.00 3.67
1702 3149 2.436109 GGCAAGTCCCTGAGCCAA 59.564 61.111 0.00 0.00 46.26 4.52
1749 3196 6.609533 TCGACTATTTTACTGTCTGTGTCTC 58.390 40.000 0.00 0.00 0.00 3.36
1756 3203 3.851976 ACTGTCTGTGTCTCGGAATAC 57.148 47.619 0.00 0.00 32.76 1.89
1842 3341 2.287915 AGTGCAGTGCTTTCGTTTACTG 59.712 45.455 17.60 0.00 42.51 2.74
1852 3351 4.773510 CTTTCGTTTACTGCTTCAGTTCC 58.226 43.478 4.70 0.00 42.59 3.62
1885 3384 4.330250 ACCTTGGTTCAATCATGACTGAG 58.670 43.478 6.98 0.00 34.61 3.35
1886 3385 4.042062 ACCTTGGTTCAATCATGACTGAGA 59.958 41.667 6.98 0.00 34.61 3.27
1887 3386 5.191426 CCTTGGTTCAATCATGACTGAGAT 58.809 41.667 6.98 0.00 34.61 2.75
1891 3390 4.747108 GGTTCAATCATGACTGAGATACGG 59.253 45.833 6.98 0.00 34.61 4.02
1901 3400 3.326747 ACTGAGATACGGCACTGTTTTC 58.673 45.455 0.00 0.00 0.00 2.29
1909 3408 1.135689 CGGCACTGTTTTCTATGCACC 60.136 52.381 0.00 0.00 39.92 5.01
1923 3422 4.815308 TCTATGCACCGAGACTAGTTAGAC 59.185 45.833 0.00 0.00 0.00 2.59
1934 3433 6.311445 CGAGACTAGTTAGACATGCATGTTTT 59.689 38.462 31.82 24.04 41.95 2.43
1942 3442 3.057033 AGACATGCATGTTTTCTGCCTTC 60.057 43.478 31.82 15.51 41.95 3.46
1944 3444 0.968405 TGCATGTTTTCTGCCTTCCC 59.032 50.000 0.00 0.00 38.89 3.97
2004 3504 4.067972 TGTTCTGTGTTCCTGGACTAAC 57.932 45.455 0.00 0.00 0.00 2.34
2009 3509 2.143925 GTGTTCCTGGACTAACTGTGC 58.856 52.381 0.00 0.00 37.53 4.57
2060 3571 8.145122 GCCTAGCTACTTTTCATACTACTCATT 58.855 37.037 0.00 0.00 0.00 2.57
2061 3572 9.685828 CCTAGCTACTTTTCATACTACTCATTC 57.314 37.037 0.00 0.00 0.00 2.67
2093 3604 5.242838 TCGTAACTCCCATTTCATGCTTTTT 59.757 36.000 0.00 0.00 0.00 1.94
2096 3607 6.916360 AACTCCCATTTCATGCTTTTTCTA 57.084 33.333 0.00 0.00 0.00 2.10
2102 3613 9.001542 TCCCATTTCATGCTTTTTCTAAAAATG 57.998 29.630 1.35 0.00 37.27 2.32
2153 4021 7.195374 AGGCAGGTTTATAGTTCATGTAAGA 57.805 36.000 0.00 0.00 0.00 2.10
2277 4147 5.391312 AAATAAGATGGTGCAAACCTCAC 57.609 39.130 0.00 0.00 0.00 3.51
2281 4151 3.347216 AGATGGTGCAAACCTCACATAC 58.653 45.455 0.00 0.00 36.22 2.39
2309 4179 3.402110 TGCAGTGGATGAAATATAGCCG 58.598 45.455 0.00 0.00 0.00 5.52
2379 4249 4.773674 TGCAGATTGTTCATCCCTGATTTT 59.226 37.500 0.00 0.00 31.20 1.82
2493 4363 9.654663 GACACTTATCCAATAACATATACTCCC 57.345 37.037 0.00 0.00 0.00 4.30
2494 4364 9.393786 ACACTTATCCAATAACATATACTCCCT 57.606 33.333 0.00 0.00 0.00 4.20
2495 4365 9.877178 CACTTATCCAATAACATATACTCCCTC 57.123 37.037 0.00 0.00 0.00 4.30
2496 4366 9.047947 ACTTATCCAATAACATATACTCCCTCC 57.952 37.037 0.00 0.00 0.00 4.30
2497 4367 5.995565 TCCAATAACATATACTCCCTCCG 57.004 43.478 0.00 0.00 0.00 4.63
2498 4368 5.399991 TCCAATAACATATACTCCCTCCGT 58.600 41.667 0.00 0.00 0.00 4.69
2499 4369 5.842328 TCCAATAACATATACTCCCTCCGTT 59.158 40.000 0.00 0.00 0.00 4.44
2500 4370 6.014840 TCCAATAACATATACTCCCTCCGTTC 60.015 42.308 0.00 0.00 0.00 3.95
2501 4371 5.997384 ATAACATATACTCCCTCCGTTCC 57.003 43.478 0.00 0.00 0.00 3.62
2502 4372 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
2503 4373 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
2504 4374 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
2505 4375 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
2506 4376 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
2507 4377 7.243824 ACATATACTCCCTCCGTTCCTAAATA 58.756 38.462 0.00 0.00 0.00 1.40
2508 4378 7.178097 ACATATACTCCCTCCGTTCCTAAATAC 59.822 40.741 0.00 0.00 0.00 1.89
2509 4379 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2510 4380 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2511 4381 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2512 4382 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2513 4383 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2514 4384 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2515 4385 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2516 4386 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2517 4387 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2518 4388 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2519 4389 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2520 4390 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2521 4391 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
2522 4392 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
2523 4393 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2524 4394 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2525 4395 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2526 4396 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2528 4398 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2529 4399 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2530 4400 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
2531 4401 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
2532 4402 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
2533 4403 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
2534 4404 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
2535 4405 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
2536 4406 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
2537 4407 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
2538 4408 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
2539 4409 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
2540 4410 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
2541 4411 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
2542 4412 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
2543 4413 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
2544 4414 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
2545 4415 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
2546 4416 6.128661 GCATTTCAACAAGTGACTACATACGA 60.129 38.462 0.00 0.00 35.39 3.43
2547 4417 7.570507 GCATTTCAACAAGTGACTACATACGAA 60.571 37.037 0.00 0.00 35.39 3.85
2548 4418 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2549 4419 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2550 4420 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2551 4421 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2552 4422 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2553 4423 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2554 4424 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2555 4425 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
2556 4426 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2557 4427 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2558 4428 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2559 4429 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2560 4430 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2561 4431 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2562 4432 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2563 4433 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2564 4434 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2565 4435 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2566 4436 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2567 4437 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2568 4438 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2611 4481 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
2612 4482 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
2613 4483 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
2614 4484 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
2615 4485 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
2616 4486 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
2617 4487 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
2618 4488 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
2642 4512 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2643 4513 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2644 4514 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2645 4515 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2646 4516 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2647 4517 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2648 4518 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2649 4519 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2650 4520 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2651 4521 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
2652 4522 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
2653 4523 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
2654 4524 4.591321 TTAGGAACGGAGGGAGTACTTA 57.409 45.455 0.00 0.00 0.00 2.24
2655 4525 3.463048 AGGAACGGAGGGAGTACTTAA 57.537 47.619 0.00 0.00 0.00 1.85
2656 4526 3.095332 AGGAACGGAGGGAGTACTTAAC 58.905 50.000 0.00 0.00 0.00 2.01
2657 4527 3.095332 GGAACGGAGGGAGTACTTAACT 58.905 50.000 0.00 0.00 42.80 2.24
2658 4528 3.513119 GGAACGGAGGGAGTACTTAACTT 59.487 47.826 0.00 0.00 39.07 2.66
2659 4529 4.020751 GGAACGGAGGGAGTACTTAACTTT 60.021 45.833 0.00 0.00 39.07 2.66
2660 4530 5.512060 GGAACGGAGGGAGTACTTAACTTTT 60.512 44.000 0.00 0.00 39.07 2.27
2661 4531 5.557576 ACGGAGGGAGTACTTAACTTTTT 57.442 39.130 0.00 0.00 39.07 1.94
2662 4532 5.303165 ACGGAGGGAGTACTTAACTTTTTG 58.697 41.667 0.00 0.00 39.07 2.44
2663 4533 4.153655 CGGAGGGAGTACTTAACTTTTTGC 59.846 45.833 0.00 0.00 39.07 3.68
2664 4534 5.314529 GGAGGGAGTACTTAACTTTTTGCT 58.685 41.667 0.00 0.00 39.07 3.91
2665 4535 5.411977 GGAGGGAGTACTTAACTTTTTGCTC 59.588 44.000 0.00 0.00 39.07 4.26
2666 4536 6.189036 AGGGAGTACTTAACTTTTTGCTCT 57.811 37.500 0.00 0.00 39.07 4.09
2667 4537 7.312415 AGGGAGTACTTAACTTTTTGCTCTA 57.688 36.000 0.00 0.00 39.07 2.43
2668 4538 7.919151 AGGGAGTACTTAACTTTTTGCTCTAT 58.081 34.615 0.00 0.00 39.07 1.98
2669 4539 8.041919 AGGGAGTACTTAACTTTTTGCTCTATC 58.958 37.037 0.00 0.00 39.07 2.08
2670 4540 7.822822 GGGAGTACTTAACTTTTTGCTCTATCA 59.177 37.037 0.00 0.00 39.07 2.15
2671 4541 9.384764 GGAGTACTTAACTTTTTGCTCTATCAT 57.615 33.333 0.00 0.00 39.07 2.45
2690 4560 9.502091 TCTATCATTTATAACCAATTTCTCGGG 57.498 33.333 0.00 0.00 0.00 5.14
2691 4561 9.284968 CTATCATTTATAACCAATTTCTCGGGT 57.715 33.333 0.00 0.00 36.19 5.28
2692 4562 7.948034 TCATTTATAACCAATTTCTCGGGTT 57.052 32.000 0.00 0.00 46.17 4.11
2693 4563 7.992008 TCATTTATAACCAATTTCTCGGGTTC 58.008 34.615 0.68 0.00 43.53 3.62
2694 4564 7.612244 TCATTTATAACCAATTTCTCGGGTTCA 59.388 33.333 0.68 0.00 43.53 3.18
2695 4565 7.762588 TTTATAACCAATTTCTCGGGTTCAA 57.237 32.000 0.68 0.00 43.53 2.69
2696 4566 7.948034 TTATAACCAATTTCTCGGGTTCAAT 57.052 32.000 0.68 0.00 43.53 2.57
2697 4567 6.850752 ATAACCAATTTCTCGGGTTCAATT 57.149 33.333 0.68 0.00 43.53 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.849322 ATTTATGTTTCCCCTTGTAACACTT 57.151 32.000 0.00 0.00 34.90 3.16
1 2 7.849322 AATTTATGTTTCCCCTTGTAACACT 57.151 32.000 0.00 0.00 34.90 3.55
2 3 9.984190 TTTAATTTATGTTTCCCCTTGTAACAC 57.016 29.630 0.00 0.00 34.90 3.32
6 7 9.660180 GCAATTTAATTTATGTTTCCCCTTGTA 57.340 29.630 0.00 0.00 0.00 2.41
7 8 7.333174 CGCAATTTAATTTATGTTTCCCCTTGT 59.667 33.333 0.00 0.00 0.00 3.16
8 9 7.547370 TCGCAATTTAATTTATGTTTCCCCTTG 59.453 33.333 0.00 0.00 0.00 3.61
9 10 7.616313 TCGCAATTTAATTTATGTTTCCCCTT 58.384 30.769 0.00 0.00 0.00 3.95
10 11 7.123547 TCTCGCAATTTAATTTATGTTTCCCCT 59.876 33.333 0.00 0.00 0.00 4.79
11 12 7.222031 GTCTCGCAATTTAATTTATGTTTCCCC 59.778 37.037 0.00 0.00 0.00 4.81
12 13 7.973944 AGTCTCGCAATTTAATTTATGTTTCCC 59.026 33.333 0.00 0.00 0.00 3.97
13 14 8.911247 AGTCTCGCAATTTAATTTATGTTTCC 57.089 30.769 0.00 0.00 0.00 3.13
14 15 9.554724 TGAGTCTCGCAATTTAATTTATGTTTC 57.445 29.630 0.00 0.00 0.00 2.78
15 16 9.559958 CTGAGTCTCGCAATTTAATTTATGTTT 57.440 29.630 0.00 0.00 0.00 2.83
16 17 7.698130 GCTGAGTCTCGCAATTTAATTTATGTT 59.302 33.333 10.53 0.00 0.00 2.71
17 18 7.148255 TGCTGAGTCTCGCAATTTAATTTATGT 60.148 33.333 14.32 0.00 32.40 2.29
18 19 7.188834 TGCTGAGTCTCGCAATTTAATTTATG 58.811 34.615 14.32 0.00 32.40 1.90
19 20 7.320443 TGCTGAGTCTCGCAATTTAATTTAT 57.680 32.000 14.32 0.00 32.40 1.40
20 21 6.735678 TGCTGAGTCTCGCAATTTAATTTA 57.264 33.333 14.32 0.00 32.40 1.40
21 22 5.627499 TGCTGAGTCTCGCAATTTAATTT 57.373 34.783 14.32 0.00 32.40 1.82
22 23 5.627499 TTGCTGAGTCTCGCAATTTAATT 57.373 34.783 20.69 0.00 40.84 1.40
65 66 2.224646 GCCTGGAGTTCTTCTTTGAGGT 60.225 50.000 0.00 0.00 0.00 3.85
216 218 1.419762 GTTGGGCTGGTGGGAAATTTT 59.580 47.619 0.00 0.00 0.00 1.82
389 1813 5.826586 TGCGATGTGTACTGATTTGTTTTT 58.173 33.333 0.00 0.00 0.00 1.94
438 1862 2.359169 CCGAGCTACCTGAAGGCCA 61.359 63.158 5.01 0.00 39.32 5.36
470 1896 1.293498 GCATGGTGGAGACGACTGT 59.707 57.895 0.00 0.00 0.00 3.55
471 1897 1.807165 CGCATGGTGGAGACGACTG 60.807 63.158 0.00 0.00 0.00 3.51
509 1936 2.820059 TATAGCGATGGAACCTGCAG 57.180 50.000 6.78 6.78 0.00 4.41
510 1937 2.632512 TCATATAGCGATGGAACCTGCA 59.367 45.455 0.00 0.00 0.00 4.41
511 1938 3.319137 TCATATAGCGATGGAACCTGC 57.681 47.619 0.00 0.00 0.00 4.85
548 1976 6.262273 GTGCTAGCTAGGCCATTTAATACAAA 59.738 38.462 22.10 0.00 0.00 2.83
576 2004 0.315886 ACGGCCGAATTTCAAAACCC 59.684 50.000 35.90 0.00 0.00 4.11
577 2005 2.993449 TACGGCCGAATTTCAAAACC 57.007 45.000 35.90 0.00 0.00 3.27
578 2006 5.638660 TTTTTACGGCCGAATTTCAAAAC 57.361 34.783 35.90 0.00 0.00 2.43
597 2025 3.885724 ATTCGGCCGAAATCCATTTTT 57.114 38.095 41.31 20.98 37.69 1.94
598 2026 3.885724 AATTCGGCCGAAATCCATTTT 57.114 38.095 41.31 26.70 37.69 1.82
599 2027 3.733684 CGAAATTCGGCCGAAATCCATTT 60.734 43.478 41.31 33.64 37.69 2.32
600 2028 2.223479 CGAAATTCGGCCGAAATCCATT 60.223 45.455 41.31 28.12 37.69 3.16
601 2029 1.333619 CGAAATTCGGCCGAAATCCAT 59.666 47.619 41.31 24.03 37.69 3.41
602 2030 0.730265 CGAAATTCGGCCGAAATCCA 59.270 50.000 41.31 22.04 37.69 3.41
603 2031 3.526825 CGAAATTCGGCCGAAATCC 57.473 52.632 41.31 29.08 37.69 3.01
613 2041 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
627 2055 8.680863 TAAAATAGATTTCGCCCTAGGCCGAG 62.681 46.154 15.21 5.78 37.68 4.63
628 2056 6.969768 TAAAATAGATTTCGCCCTAGGCCGA 61.970 44.000 11.45 11.45 37.68 5.54
629 2057 4.801581 TAAAATAGATTTCGCCCTAGGCCG 60.802 45.833 5.62 5.62 37.68 6.13
630 2058 4.454847 GTAAAATAGATTTCGCCCTAGGCC 59.545 45.833 2.05 0.00 37.68 5.19
631 2059 4.151867 CGTAAAATAGATTTCGCCCTAGGC 59.848 45.833 2.05 0.00 37.63 3.93
632 2060 4.151867 GCGTAAAATAGATTTCGCCCTAGG 59.848 45.833 0.06 0.06 39.47 3.02
633 2061 5.265407 GCGTAAAATAGATTTCGCCCTAG 57.735 43.478 8.94 0.00 39.47 3.02
638 2066 3.847037 TCGGCGTAAAATAGATTTCGC 57.153 42.857 6.85 10.82 42.01 4.70
639 2067 6.140108 CCAATTTCGGCGTAAAATAGATTTCG 59.860 38.462 6.85 0.00 32.27 3.46
640 2068 6.970613 ACCAATTTCGGCGTAAAATAGATTTC 59.029 34.615 6.85 0.00 32.27 2.17
641 2069 6.859017 ACCAATTTCGGCGTAAAATAGATTT 58.141 32.000 6.85 0.00 34.92 2.17
642 2070 6.094325 TGACCAATTTCGGCGTAAAATAGATT 59.906 34.615 6.85 0.00 0.00 2.40
643 2071 5.587043 TGACCAATTTCGGCGTAAAATAGAT 59.413 36.000 6.85 0.00 0.00 1.98
644 2072 4.936411 TGACCAATTTCGGCGTAAAATAGA 59.064 37.500 6.85 0.00 0.00 1.98
645 2073 5.224562 TGACCAATTTCGGCGTAAAATAG 57.775 39.130 6.85 4.84 0.00 1.73
646 2074 5.624344 TTGACCAATTTCGGCGTAAAATA 57.376 34.783 6.85 0.00 0.00 1.40
647 2075 4.506886 TTGACCAATTTCGGCGTAAAAT 57.493 36.364 6.85 3.51 0.00 1.82
648 2076 3.984508 TTGACCAATTTCGGCGTAAAA 57.015 38.095 6.85 0.69 0.00 1.52
649 2077 3.984508 TTTGACCAATTTCGGCGTAAA 57.015 38.095 6.85 6.88 0.00 2.01
650 2078 4.506886 AATTTGACCAATTTCGGCGTAA 57.493 36.364 6.85 3.46 30.09 3.18
651 2079 4.023107 TCAAATTTGACCAATTTCGGCGTA 60.023 37.500 16.91 0.00 42.28 4.42
652 2080 3.056304 CAAATTTGACCAATTTCGGCGT 58.944 40.909 13.08 0.00 42.28 5.68
653 2081 3.312828 TCAAATTTGACCAATTTCGGCG 58.687 40.909 16.91 0.00 42.28 6.46
654 2082 4.555262 TCTCAAATTTGACCAATTTCGGC 58.445 39.130 16.91 0.00 42.28 5.54
655 2083 7.656707 ATTTCTCAAATTTGACCAATTTCGG 57.343 32.000 16.91 4.55 42.28 4.30
712 2140 1.889829 TCGGCCGAAATTTGACCAAAT 59.110 42.857 28.99 2.38 42.35 2.32
713 2141 1.319541 TCGGCCGAAATTTGACCAAA 58.680 45.000 28.99 0.00 34.46 3.28
714 2142 1.319541 TTCGGCCGAAATTTGACCAA 58.680 45.000 37.13 11.77 0.00 3.67
715 2143 1.319541 TTTCGGCCGAAATTTGACCA 58.680 45.000 41.63 22.96 38.95 4.02
723 2151 5.517770 TCGTTTTTAAAAATTTCGGCCGAAA 59.482 32.000 44.99 44.99 46.37 3.46
724 2152 5.039333 TCGTTTTTAAAAATTTCGGCCGAA 58.961 33.333 35.81 35.81 0.00 4.30
725 2153 4.440431 GTCGTTTTTAAAAATTTCGGCCGA 59.560 37.500 27.28 27.28 0.00 5.54
726 2154 4.375205 GGTCGTTTTTAAAAATTTCGGCCG 60.375 41.667 22.12 22.12 32.60 6.13
727 2155 4.375205 CGGTCGTTTTTAAAAATTTCGGCC 60.375 41.667 24.70 24.70 36.74 6.13
728 2156 4.440431 TCGGTCGTTTTTAAAAATTTCGGC 59.560 37.500 16.02 15.29 0.00 5.54
729 2157 6.493697 TTCGGTCGTTTTTAAAAATTTCGG 57.506 33.333 16.02 12.42 0.00 4.30
730 2158 8.959761 AATTTCGGTCGTTTTTAAAAATTTCG 57.040 26.923 16.02 14.40 0.00 3.46
731 2159 9.073266 CGAATTTCGGTCGTTTTTAAAAATTTC 57.927 29.630 16.02 9.25 36.00 2.17
732 2160 8.959761 CGAATTTCGGTCGTTTTTAAAAATTT 57.040 26.923 16.02 0.00 36.00 1.82
749 2177 1.934463 CCGAGATGGCCGAATTTCG 59.066 57.895 11.81 11.81 40.07 3.46
767 2195 1.671328 GTGATTTTTCTCGCCCTAGGC 59.329 52.381 2.05 0.00 46.75 3.93
768 2196 2.985896 TGTGATTTTTCTCGCCCTAGG 58.014 47.619 0.06 0.06 0.00 3.02
769 2197 4.379499 GGTTTGTGATTTTTCTCGCCCTAG 60.379 45.833 0.00 0.00 0.00 3.02
770 2198 3.504520 GGTTTGTGATTTTTCTCGCCCTA 59.495 43.478 0.00 0.00 0.00 3.53
771 2199 2.296190 GGTTTGTGATTTTTCTCGCCCT 59.704 45.455 0.00 0.00 0.00 5.19
772 2200 2.672714 GGTTTGTGATTTTTCTCGCCC 58.327 47.619 0.00 0.00 0.00 6.13
773 2201 2.031508 TCGGTTTGTGATTTTTCTCGCC 60.032 45.455 0.00 0.00 0.00 5.54
774 2202 3.262135 TCGGTTTGTGATTTTTCTCGC 57.738 42.857 0.00 0.00 0.00 5.03
775 2203 6.416455 TGATTTTCGGTTTGTGATTTTTCTCG 59.584 34.615 0.00 0.00 0.00 4.04
776 2204 7.692908 TGATTTTCGGTTTGTGATTTTTCTC 57.307 32.000 0.00 0.00 0.00 2.87
777 2205 8.485976 TTTGATTTTCGGTTTGTGATTTTTCT 57.514 26.923 0.00 0.00 0.00 2.52
778 2206 8.994881 GTTTTGATTTTCGGTTTGTGATTTTTC 58.005 29.630 0.00 0.00 0.00 2.29
779 2207 7.690224 CGTTTTGATTTTCGGTTTGTGATTTTT 59.310 29.630 0.00 0.00 0.00 1.94
780 2208 7.176741 CGTTTTGATTTTCGGTTTGTGATTTT 58.823 30.769 0.00 0.00 0.00 1.82
781 2209 6.700978 CGTTTTGATTTTCGGTTTGTGATTT 58.299 32.000 0.00 0.00 0.00 2.17
782 2210 5.276631 GCGTTTTGATTTTCGGTTTGTGATT 60.277 36.000 0.00 0.00 0.00 2.57
783 2211 4.208253 GCGTTTTGATTTTCGGTTTGTGAT 59.792 37.500 0.00 0.00 0.00 3.06
784 2212 3.548268 GCGTTTTGATTTTCGGTTTGTGA 59.452 39.130 0.00 0.00 0.00 3.58
785 2213 3.549873 AGCGTTTTGATTTTCGGTTTGTG 59.450 39.130 0.00 0.00 0.00 3.33
786 2214 3.549873 CAGCGTTTTGATTTTCGGTTTGT 59.450 39.130 0.00 0.00 31.89 2.83
787 2215 3.060607 CCAGCGTTTTGATTTTCGGTTTG 60.061 43.478 0.00 0.00 31.89 2.93
788 2216 3.120041 CCAGCGTTTTGATTTTCGGTTT 58.880 40.909 0.00 0.00 31.89 3.27
789 2217 2.738135 CCAGCGTTTTGATTTTCGGTT 58.262 42.857 0.00 0.00 31.89 4.44
790 2218 1.601914 GCCAGCGTTTTGATTTTCGGT 60.602 47.619 0.00 0.00 34.46 4.69
791 2219 1.059942 GCCAGCGTTTTGATTTTCGG 58.940 50.000 0.00 0.00 0.00 4.30
792 2220 2.050477 AGCCAGCGTTTTGATTTTCG 57.950 45.000 0.00 0.00 0.00 3.46
793 2221 2.917343 GCTAGCCAGCGTTTTGATTTTC 59.083 45.455 2.29 0.00 38.22 2.29
794 2222 2.946564 GCTAGCCAGCGTTTTGATTTT 58.053 42.857 2.29 0.00 38.22 1.82
795 2223 2.636768 GCTAGCCAGCGTTTTGATTT 57.363 45.000 2.29 0.00 38.22 2.17
807 2235 1.830587 CTGACACTGGGTGCTAGCCA 61.831 60.000 13.29 1.77 44.64 4.75
808 2236 1.078848 CTGACACTGGGTGCTAGCC 60.079 63.158 13.29 3.27 36.98 3.93
809 2237 0.671781 CACTGACACTGGGTGCTAGC 60.672 60.000 8.10 8.10 36.98 3.42
810 2238 0.969149 TCACTGACACTGGGTGCTAG 59.031 55.000 0.00 0.00 36.98 3.42
811 2239 0.969149 CTCACTGACACTGGGTGCTA 59.031 55.000 0.00 0.00 36.98 3.49
812 2240 1.750930 CTCACTGACACTGGGTGCT 59.249 57.895 0.00 0.00 36.98 4.40
813 2241 1.302033 CCTCACTGACACTGGGTGC 60.302 63.158 0.00 0.00 36.98 5.01
814 2242 0.319728 CTCCTCACTGACACTGGGTG 59.680 60.000 0.00 0.00 39.75 4.61
815 2243 0.833834 CCTCCTCACTGACACTGGGT 60.834 60.000 0.00 0.00 0.00 4.51
816 2244 0.542938 TCCTCCTCACTGACACTGGG 60.543 60.000 0.00 0.00 0.00 4.45
817 2245 1.566211 ATCCTCCTCACTGACACTGG 58.434 55.000 0.00 0.00 0.00 4.00
834 2262 7.986085 ACTGGTGGCATATATGTTCTAAATC 57.014 36.000 14.14 0.00 0.00 2.17
928 2360 9.927081 ATGGAGATTTATACAGAAAATCAAGGT 57.073 29.630 10.26 0.00 42.98 3.50
958 2390 3.149196 GTTCAGCTGGGTTGAGAAATGA 58.851 45.455 15.13 0.00 0.00 2.57
994 2435 1.277557 GCTCTGTGGTCTCATGGAACT 59.722 52.381 0.00 0.00 31.77 3.01
1106 2547 4.020928 TCAAGGACACTTTGCGATAGGTAA 60.021 41.667 0.00 0.00 33.81 2.85
1149 2590 7.651027 AATAAGTAAATCAAGCAGCAGGAAT 57.349 32.000 0.00 0.00 0.00 3.01
1174 2615 9.717994 ATATAATATGCATGGGATGGATCAAAA 57.282 29.630 10.16 0.00 40.67 2.44
1257 2701 3.371965 GAGTACACCCTCTGGATTACCA 58.628 50.000 0.00 0.00 44.76 3.25
1260 2704 3.042059 GGGAGTACACCCTCTGGATTA 57.958 52.381 20.23 0.00 45.90 1.75
1271 2715 0.107654 GGCCACATCAGGGAGTACAC 60.108 60.000 0.00 0.00 0.00 2.90
1286 2730 1.098712 GTTGACCTCAACGTTGGCCA 61.099 55.000 27.02 16.25 45.44 5.36
1287 2731 1.652563 GTTGACCTCAACGTTGGCC 59.347 57.895 27.02 14.09 45.44 5.36
1385 2832 2.110213 GGCACACTGGACAACGGA 59.890 61.111 0.00 0.00 0.00 4.69
1470 2917 0.833949 TGCATAAGTGGGTCCGCATA 59.166 50.000 3.23 0.00 0.00 3.14
1511 2958 3.118992 TCTGCATTTCTATGTCGAGCAGT 60.119 43.478 14.63 0.00 45.85 4.40
1739 3186 8.922058 TTTATTAAGTATTCCGAGACACAGAC 57.078 34.615 0.00 0.00 0.00 3.51
1769 3216 7.268586 ACGTGAGATAAAATCATAAGACTGCT 58.731 34.615 0.00 0.00 0.00 4.24
1775 3222 9.559958 AAGCAAAACGTGAGATAAAATCATAAG 57.440 29.630 0.00 0.00 0.00 1.73
1791 3238 2.869801 TCACGAATCTGAAGCAAAACGT 59.130 40.909 0.00 0.00 0.00 3.99
1852 3351 6.814644 TGATTGAACCAAGGTATACGTAACAG 59.185 38.462 0.00 0.00 0.00 3.16
1885 3384 3.621268 TGCATAGAAAACAGTGCCGTATC 59.379 43.478 0.00 0.00 36.79 2.24
1886 3385 3.374058 GTGCATAGAAAACAGTGCCGTAT 59.626 43.478 0.00 0.00 36.79 3.06
1887 3386 2.739913 GTGCATAGAAAACAGTGCCGTA 59.260 45.455 0.00 0.00 36.79 4.02
1891 3390 1.804151 TCGGTGCATAGAAAACAGTGC 59.196 47.619 0.00 0.00 38.05 4.40
1901 3400 4.575236 TGTCTAACTAGTCTCGGTGCATAG 59.425 45.833 0.00 0.00 0.00 2.23
1909 3408 4.926244 ACATGCATGTCTAACTAGTCTCG 58.074 43.478 26.61 0.00 35.87 4.04
1923 3422 2.613691 GGAAGGCAGAAAACATGCATG 58.386 47.619 25.09 25.09 45.68 4.06
1934 3433 5.975988 ACAATATTCTTAGGGAAGGCAGA 57.024 39.130 0.00 0.00 37.36 4.26
1942 3442 7.120285 CCAGATGCACATACAATATTCTTAGGG 59.880 40.741 0.00 0.00 0.00 3.53
1944 3444 8.837788 TCCAGATGCACATACAATATTCTTAG 57.162 34.615 0.00 0.00 0.00 2.18
2004 3504 5.097529 CACAAGCAATATAACTTGGCACAG 58.902 41.667 17.40 0.00 46.03 3.66
2009 3509 6.363088 CACACAACACAAGCAATATAACTTGG 59.637 38.462 17.40 11.04 46.03 3.61
2096 3607 9.991906 CAAATAGCATATCCAGAATCCATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
2102 3613 7.398024 AGGTACAAATAGCATATCCAGAATCC 58.602 38.462 0.00 0.00 0.00 3.01
2153 4021 9.908152 GGAAGTAAAATGTAAATTACAGCTGTT 57.092 29.630 27.06 9.59 42.77 3.16
2207 4075 8.592105 TGAGAGTTTGCAATGAAAATAAAAGG 57.408 30.769 0.00 0.00 0.00 3.11
2213 4081 7.013655 ACACTACTGAGAGTTTGCAATGAAAAT 59.986 33.333 0.00 0.00 0.00 1.82
2277 4147 7.500720 TTTCATCCACTGCAATATCAGTATG 57.499 36.000 0.00 0.49 44.81 2.39
2281 4151 8.396390 GCTATATTTCATCCACTGCAATATCAG 58.604 37.037 0.00 0.00 35.89 2.90
2309 4179 8.764287 GCATGGCATATTTTTGGACTAAAATAC 58.236 33.333 0.00 3.77 40.70 1.89
2410 4280 6.240894 TCAGTAATTTGAATGACTGGAAGCT 58.759 36.000 17.27 0.00 44.64 3.74
2491 4361 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2492 4362 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2493 4363 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2494 4364 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2495 4365 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2496 4366 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2497 4367 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2498 4368 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2499 4369 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2500 4370 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2502 4372 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2503 4373 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2504 4374 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
2505 4375 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
2506 4376 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
2507 4377 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
2508 4378 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
2509 4379 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
2510 4380 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
2511 4381 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
2512 4382 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
2513 4383 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
2514 4384 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
2515 4385 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
2516 4386 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
2517 4387 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
2518 4388 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
2519 4389 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
2520 4390 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
2521 4391 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
2522 4392 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
2523 4393 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2524 4394 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2525 4395 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2526 4396 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2527 4397 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2528 4398 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2529 4399 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2530 4400 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2531 4401 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2532 4402 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2533 4403 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
2534 4404 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2535 4405 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2536 4406 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2537 4407 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2538 4408 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
2539 4409 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2540 4410 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2541 4411 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2542 4412 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2543 4413 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2544 4414 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2545 4415 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2585 4455 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
2586 4456 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
2588 4458 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
2589 4459 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
2590 4460 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
2591 4461 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
2592 4462 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
2616 4486 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2617 4487 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2618 4488 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2619 4489 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2620 4490 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2621 4491 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2622 4492 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2623 4493 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2624 4494 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2625 4495 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2626 4496 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2627 4497 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2628 4498 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2629 4499 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2630 4500 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2631 4501 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2632 4502 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2633 4503 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2634 4504 4.018050 AGTTAAGTACTCCCTCCGTTCCTA 60.018 45.833 0.00 0.00 28.23 2.94
2635 4505 3.095332 GTTAAGTACTCCCTCCGTTCCT 58.905 50.000 0.00 0.00 0.00 3.36
2636 4506 3.095332 AGTTAAGTACTCCCTCCGTTCC 58.905 50.000 0.00 0.00 28.23 3.62
2637 4507 4.797800 AAGTTAAGTACTCCCTCCGTTC 57.202 45.455 0.00 0.00 35.54 3.95
2638 4508 5.557576 AAAAGTTAAGTACTCCCTCCGTT 57.442 39.130 0.00 0.00 35.54 4.44
2639 4509 5.303165 CAAAAAGTTAAGTACTCCCTCCGT 58.697 41.667 0.00 0.00 35.54 4.69
2640 4510 4.153655 GCAAAAAGTTAAGTACTCCCTCCG 59.846 45.833 0.00 0.00 35.54 4.63
2641 4511 5.314529 AGCAAAAAGTTAAGTACTCCCTCC 58.685 41.667 0.00 0.00 35.54 4.30
2642 4512 6.231951 AGAGCAAAAAGTTAAGTACTCCCTC 58.768 40.000 0.00 0.00 35.54 4.30
2643 4513 6.189036 AGAGCAAAAAGTTAAGTACTCCCT 57.811 37.500 0.00 0.00 35.54 4.20
2644 4514 7.822822 TGATAGAGCAAAAAGTTAAGTACTCCC 59.177 37.037 0.00 0.00 35.54 4.30
2645 4515 8.773404 TGATAGAGCAAAAAGTTAAGTACTCC 57.227 34.615 0.00 0.00 35.54 3.85
2664 4534 9.502091 CCCGAGAAATTGGTTATAAATGATAGA 57.498 33.333 0.00 0.00 0.00 1.98
2665 4535 9.284968 ACCCGAGAAATTGGTTATAAATGATAG 57.715 33.333 0.00 0.00 0.00 2.08
2666 4536 9.635404 AACCCGAGAAATTGGTTATAAATGATA 57.365 29.630 0.00 0.00 40.49 2.15
2667 4537 8.533569 AACCCGAGAAATTGGTTATAAATGAT 57.466 30.769 0.00 0.00 40.49 2.45
2668 4538 7.612244 TGAACCCGAGAAATTGGTTATAAATGA 59.388 33.333 0.00 0.00 42.27 2.57
2669 4539 7.767261 TGAACCCGAGAAATTGGTTATAAATG 58.233 34.615 0.00 0.00 42.27 2.32
2670 4540 7.948034 TGAACCCGAGAAATTGGTTATAAAT 57.052 32.000 0.00 0.00 42.27 1.40
2671 4541 7.762588 TTGAACCCGAGAAATTGGTTATAAA 57.237 32.000 0.00 0.00 42.27 1.40
2672 4542 7.948034 ATTGAACCCGAGAAATTGGTTATAA 57.052 32.000 0.00 0.00 42.27 0.98
2673 4543 7.948034 AATTGAACCCGAGAAATTGGTTATA 57.052 32.000 0.00 0.00 42.27 0.98
2674 4544 6.850752 AATTGAACCCGAGAAATTGGTTAT 57.149 33.333 0.00 0.00 42.27 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.