Multiple sequence alignment - TraesCS5A01G103900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G103900 chr5A 100.000 9466 0 0 1 9466 165336472 165327007 0.000000e+00 17481.0
1 TraesCS5A01G103900 chr5A 94.040 302 15 3 5574 5875 540627472 540627174 1.120000e-123 455.0
2 TraesCS5A01G103900 chr5A 92.532 308 17 2 5571 5873 20228340 20228646 4.060000e-118 436.0
3 TraesCS5A01G103900 chr5A 96.491 171 2 2 5871 6041 168588627 168588461 7.240000e-71 279.0
4 TraesCS5A01G103900 chr5A 82.114 246 41 3 6405 6650 625770417 625770659 3.460000e-49 207.0
5 TraesCS5A01G103900 chr5A 82.000 250 26 9 6079 6317 536124635 536124394 2.700000e-45 195.0
6 TraesCS5A01G103900 chr5A 100.000 35 0 0 3641 3675 165332707 165332673 2.210000e-06 65.8
7 TraesCS5A01G103900 chr5A 100.000 35 0 0 3766 3800 165332832 165332798 2.210000e-06 65.8
8 TraesCS5A01G103900 chr5B 96.025 5434 158 34 44 5442 172632136 172626726 0.000000e+00 8785.0
9 TraesCS5A01G103900 chr5B 95.896 3070 96 17 6040 9097 172626729 172623678 0.000000e+00 4944.0
10 TraesCS5A01G103900 chr5B 94.717 1855 72 13 1255 3093 570952010 570953854 0.000000e+00 2859.0
11 TraesCS5A01G103900 chr5B 91.558 308 17 2 9080 9387 172620713 172620415 5.290000e-112 416.0
12 TraesCS5A01G103900 chr5B 83.333 252 35 4 6405 6653 629833679 629833432 9.560000e-55 226.0
13 TraesCS5A01G103900 chr5B 82.540 252 37 4 6405 6653 626764370 626764123 2.070000e-51 215.0
14 TraesCS5A01G103900 chr5B 82.915 199 29 3 6405 6600 489175111 489174915 3.510000e-39 174.0
15 TraesCS5A01G103900 chr5B 97.826 46 1 0 1229 1274 570951781 570951826 7.880000e-11 80.5
16 TraesCS5A01G103900 chr5B 100.000 35 0 0 3641 3675 172628402 172628368 2.210000e-06 65.8
17 TraesCS5A01G103900 chr5B 88.235 51 3 3 6706 6753 464889276 464889326 3.690000e-04 58.4
18 TraesCS5A01G103900 chr5D 96.580 4942 91 29 1 4898 175757927 175762834 0.000000e+00 8118.0
19 TraesCS5A01G103900 chr5D 95.354 3444 82 25 5871 9280 175767407 175770806 0.000000e+00 5402.0
20 TraesCS5A01G103900 chr5D 96.135 414 14 2 4894 5306 175766868 175767280 0.000000e+00 675.0
21 TraesCS5A01G103900 chr5D 91.288 264 20 3 5313 5574 175767147 175767409 3.250000e-94 357.0
22 TraesCS5A01G103900 chr5D 95.977 174 3 1 5871 6044 5560992 5561161 7.240000e-71 279.0
23 TraesCS5A01G103900 chr5D 81.818 242 28 8 6079 6311 422702315 422702081 1.250000e-43 189.0
24 TraesCS5A01G103900 chr5D 100.000 35 0 0 3766 3800 175761575 175761609 2.210000e-06 65.8
25 TraesCS5A01G103900 chr5D 90.000 50 2 3 6707 6753 386860744 386860793 2.850000e-05 62.1
26 TraesCS5A01G103900 chr2B 93.308 2077 108 17 1035 3093 300325814 300327877 0.000000e+00 3037.0
27 TraesCS5A01G103900 chr2B 95.209 647 19 5 2457 3093 798304448 798305092 0.000000e+00 1013.0
28 TraesCS5A01G103900 chr2B 77.124 459 87 12 3909 4360 511276320 511276767 5.680000e-62 250.0
29 TraesCS5A01G103900 chr2B 80.714 140 23 4 6045 6184 508955262 508955127 1.300000e-18 106.0
30 TraesCS5A01G103900 chr3B 94.715 1892 77 14 1229 3101 279517709 279515822 0.000000e+00 2918.0
31 TraesCS5A01G103900 chr3B 87.603 242 21 6 6416 6653 819739795 819739559 1.210000e-68 272.0
32 TraesCS5A01G103900 chr3B 92.258 155 11 1 7429 7583 528176190 528176343 1.600000e-52 219.0
33 TraesCS5A01G103900 chr6B 94.111 1868 83 15 1229 3087 369658897 369657048 0.000000e+00 2815.0
34 TraesCS5A01G103900 chr6B 83.846 260 31 10 6407 6658 274212609 274212865 4.420000e-58 237.0
35 TraesCS5A01G103900 chr7B 94.574 1714 71 15 1390 3093 423438575 423436874 0.000000e+00 2630.0
36 TraesCS5A01G103900 chr7B 92.730 729 27 5 1035 1758 732523148 732523855 0.000000e+00 1029.0
37 TraesCS5A01G103900 chr7B 75.828 302 63 10 4706 5003 296343599 296343304 2.760000e-30 145.0
38 TraesCS5A01G103900 chr4A 92.613 731 28 6 1035 1758 284249084 284248373 0.000000e+00 1027.0
39 TraesCS5A01G103900 chr4A 94.649 299 13 3 5573 5871 441498983 441499278 2.410000e-125 460.0
40 TraesCS5A01G103900 chr4A 97.024 168 1 2 5876 6043 119307397 119307560 7.240000e-71 279.0
41 TraesCS5A01G103900 chr4A 98.485 132 2 0 5440 5571 432801139 432801270 5.720000e-57 233.0
42 TraesCS5A01G103900 chr4A 90.303 165 14 2 7420 7584 690411281 690411443 2.070000e-51 215.0
43 TraesCS5A01G103900 chr2A 94.939 652 25 5 1036 1681 300215718 300215069 0.000000e+00 1014.0
44 TraesCS5A01G103900 chr2A 91.401 314 25 2 5574 5886 719525623 719525311 6.790000e-116 429.0
45 TraesCS5A01G103900 chr2A 96.491 171 3 1 5871 6041 297255059 297255226 7.240000e-71 279.0
46 TraesCS5A01G103900 chr2A 77.181 447 88 9 3919 4360 553487072 553486635 2.040000e-61 248.0
47 TraesCS5A01G103900 chr2A 97.122 139 4 0 5436 5574 588277456 588277318 1.590000e-57 235.0
48 TraesCS5A01G103900 chr2A 97.744 133 3 0 5442 5574 297254929 297255061 7.390000e-56 230.0
49 TraesCS5A01G103900 chr2A 96.591 88 3 0 1035 1122 361488595 361488682 7.660000e-31 147.0
50 TraesCS5A01G103900 chr7A 94.640 653 25 7 1035 1681 240670604 240669956 0.000000e+00 1003.0
51 TraesCS5A01G103900 chr7A 94.774 287 9 2 5574 5860 93490683 93490403 8.720000e-120 442.0
52 TraesCS5A01G103900 chr7A 84.766 256 34 4 6405 6658 540899251 540899503 1.580000e-62 252.0
53 TraesCS5A01G103900 chr7A 88.000 125 14 1 6533 6656 17761642 17761766 7.660000e-31 147.0
54 TraesCS5A01G103900 chr7A 87.097 93 8 4 4913 5003 375886374 375886284 1.680000e-17 102.0
55 TraesCS5A01G103900 chr1A 95.793 309 8 1 5574 5877 578264963 578265271 2.370000e-135 494.0
56 TraesCS5A01G103900 chr1A 81.471 367 52 10 5569 5922 420381405 420381042 4.330000e-73 287.0
57 TraesCS5A01G103900 chr1A 97.037 135 4 0 5440 5574 231450147 231450013 2.660000e-55 228.0
58 TraesCS5A01G103900 chr1A 97.037 135 4 0 5440 5574 315373039 315372905 2.660000e-55 228.0
59 TraesCS5A01G103900 chr6A 93.590 312 15 1 5572 5878 50930961 50930650 2.410000e-125 460.0
60 TraesCS5A01G103900 chr6A 97.024 168 0 2 5876 6043 386665948 386666110 2.600000e-70 278.0
61 TraesCS5A01G103900 chr6A 95.954 173 2 2 5871 6043 134355046 134355213 9.360000e-70 276.0
62 TraesCS5A01G103900 chr6A 95.376 173 3 2 5871 6043 458954264 458954431 4.360000e-68 270.0
63 TraesCS5A01G103900 chr6A 97.037 135 4 0 5440 5574 298485517 298485383 2.660000e-55 228.0
64 TraesCS5A01G103900 chr6A 97.037 135 4 0 5440 5574 522884212 522884346 2.660000e-55 228.0
65 TraesCS5A01G103900 chr6A 76.684 193 16 11 3426 3617 608365662 608365498 7.880000e-11 80.5
66 TraesCS5A01G103900 chr3D 93.046 302 17 4 5570 5871 81841269 81841566 1.130000e-118 438.0
67 TraesCS5A01G103900 chr3D 81.250 160 19 4 6492 6651 606596208 606596060 1.670000e-22 119.0
68 TraesCS5A01G103900 chr3D 79.630 162 21 4 6492 6651 606567195 606567044 1.300000e-18 106.0
69 TraesCS5A01G103900 chr3A 93.559 295 17 2 5577 5871 196422009 196421717 1.130000e-118 438.0
70 TraesCS5A01G103900 chr3A 93.956 182 6 2 5871 6052 109973037 109972861 4.360000e-68 270.0
71 TraesCS5A01G103900 chr3A 97.037 135 4 0 5440 5574 325451496 325451362 2.660000e-55 228.0
72 TraesCS5A01G103900 chr4D 86.111 252 28 5 6405 6653 506872075 506872322 2.030000e-66 265.0
73 TraesCS5A01G103900 chr4D 91.824 159 11 2 7428 7585 74079350 74079507 4.450000e-53 220.0
74 TraesCS5A01G103900 chr4D 88.889 117 13 0 6542 6658 459077644 459077760 2.760000e-30 145.0
75 TraesCS5A01G103900 chr4D 81.935 155 21 5 6416 6569 134133008 134133156 3.590000e-24 124.0
76 TraesCS5A01G103900 chr4D 84.848 66 10 0 6127 6192 463462593 463462658 6.130000e-07 67.6
77 TraesCS5A01G103900 chr2D 77.111 450 89 9 3916 4360 433506446 433506886 2.040000e-61 248.0
78 TraesCS5A01G103900 chr2D 88.060 67 8 0 6127 6193 430621093 430621027 7.880000e-11 80.5
79 TraesCS5A01G103900 chr7D 92.593 162 11 1 7423 7584 34757024 34756864 2.060000e-56 231.0
80 TraesCS5A01G103900 chr7D 83.333 240 32 7 6417 6653 629096453 629096687 2.070000e-51 215.0
81 TraesCS5A01G103900 chr7D 80.882 136 20 6 4868 5000 311874974 311875106 1.680000e-17 102.0
82 TraesCS5A01G103900 chr4B 91.124 169 13 2 7428 7596 146469215 146469381 2.660000e-55 228.0
83 TraesCS5A01G103900 chr4B 91.772 158 12 1 7428 7585 106227408 106227564 1.600000e-52 219.0
84 TraesCS5A01G103900 chr4B 91.304 161 11 3 7423 7582 438375175 438375333 5.760000e-52 217.0
85 TraesCS5A01G103900 chr4B 75.399 439 91 15 3916 4347 132854587 132854159 7.500000e-46 196.0
86 TraesCS5A01G103900 chr4B 83.226 155 21 4 6416 6569 159626255 159626105 4.610000e-28 137.0
87 TraesCS5A01G103900 chr4B 88.000 75 9 0 6580 6654 556887625 556887551 1.310000e-13 89.8
88 TraesCS5A01G103900 chrUn 77.152 302 59 10 4692 4989 10136987 10137282 5.880000e-37 167.0
89 TraesCS5A01G103900 chr1B 78.140 215 20 10 3101 3313 601830335 601830146 2.790000e-20 111.0
90 TraesCS5A01G103900 chr6D 82.308 130 9 7 3426 3554 461651643 461651527 6.050000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G103900 chr5A 165327007 165336472 9465 True 5870.866667 17481 100.00000 1 9466 3 chr5A.!!$R4 9465
1 TraesCS5A01G103900 chr5B 172620415 172632136 11721 True 3552.700000 8785 95.86975 44 9387 4 chr5B.!!$R4 9343
2 TraesCS5A01G103900 chr5B 570951781 570953854 2073 False 1469.750000 2859 96.27150 1229 3093 2 chr5B.!!$F2 1864
3 TraesCS5A01G103900 chr5D 175757927 175762834 4907 False 4091.900000 8118 98.29000 1 4898 2 chr5D.!!$F3 4897
4 TraesCS5A01G103900 chr5D 175766868 175770806 3938 False 2144.666667 5402 94.25900 4894 9280 3 chr5D.!!$F4 4386
5 TraesCS5A01G103900 chr2B 300325814 300327877 2063 False 3037.000000 3037 93.30800 1035 3093 1 chr2B.!!$F1 2058
6 TraesCS5A01G103900 chr2B 798304448 798305092 644 False 1013.000000 1013 95.20900 2457 3093 1 chr2B.!!$F3 636
7 TraesCS5A01G103900 chr3B 279515822 279517709 1887 True 2918.000000 2918 94.71500 1229 3101 1 chr3B.!!$R1 1872
8 TraesCS5A01G103900 chr6B 369657048 369658897 1849 True 2815.000000 2815 94.11100 1229 3087 1 chr6B.!!$R1 1858
9 TraesCS5A01G103900 chr7B 423436874 423438575 1701 True 2630.000000 2630 94.57400 1390 3093 1 chr7B.!!$R2 1703
10 TraesCS5A01G103900 chr7B 732523148 732523855 707 False 1029.000000 1029 92.73000 1035 1758 1 chr7B.!!$F1 723
11 TraesCS5A01G103900 chr4A 284248373 284249084 711 True 1027.000000 1027 92.61300 1035 1758 1 chr4A.!!$R1 723
12 TraesCS5A01G103900 chr2A 300215069 300215718 649 True 1014.000000 1014 94.93900 1036 1681 1 chr2A.!!$R1 645
13 TraesCS5A01G103900 chr7A 240669956 240670604 648 True 1003.000000 1003 94.64000 1035 1681 1 chr7A.!!$R2 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 294 0.313672 TCTGCAAATGCGTTTGACCC 59.686 50.000 30.83 15.97 46.03 4.46 F
983 1005 1.258982 CTTCGTCACTGTGTGCTGAAC 59.741 52.381 7.79 0.00 32.98 3.18 F
2237 2478 1.980036 TGAACTGTAGGGGGTGGTTAC 59.020 52.381 0.00 0.00 0.00 2.50 F
3015 3278 2.843113 AGAAGGCTGGCTGTTTCTATCT 59.157 45.455 3.84 0.00 0.00 1.98 F
4070 4347 2.432146 ACTCATAATGCGCTTCCTCAGA 59.568 45.455 9.73 0.00 0.00 3.27 F
5132 5422 1.427809 CTCCTCACCCATGCAGGATA 58.572 55.000 0.00 0.00 41.22 2.59 F
5289 5579 0.036875 CTTTGAGTCCTGACCCCCAC 59.963 60.000 0.00 0.00 0.00 4.61 F
7003 7305 0.032217 AAGGGCATGTACAATGGGGG 60.032 55.000 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1836 1.176527 AAAATGCCAGACCACCATCG 58.823 50.000 0.00 0.00 0.00 3.84 R
2410 2651 0.320374 TGTTTGAGAGCGGTACCAGG 59.680 55.000 13.54 0.00 0.00 4.45 R
4070 4347 5.486735 TCATTGACAAAATTCCAGGCAAT 57.513 34.783 0.00 1.24 0.00 3.56 R
4459 4745 4.447138 ACACATAAAAAGGTGAGTCCCA 57.553 40.909 0.00 0.00 38.38 4.37 R
5289 5579 0.748450 TAAACCATAGGAGCGTCCGG 59.252 55.000 0.00 0.00 42.75 5.14 R
6941 7241 1.267121 TTGGCAGGTACAGAGGAGAC 58.733 55.000 0.00 0.00 0.00 3.36 R
7256 7558 3.198853 GGGTGCTCTTAGATTGAGAAGGT 59.801 47.826 0.00 0.00 33.68 3.50 R
8678 8985 1.343142 AGTCACACGTGCCTATGTTCA 59.657 47.619 17.22 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.770795 AGATTCAGATTACGGTTTGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
58 75 0.329261 AGGGCTTACTGCATGCTTCA 59.671 50.000 20.33 0.00 45.15 3.02
178 195 0.388134 CCTACCTGTCCACGAACACG 60.388 60.000 0.00 0.00 0.00 4.49
268 285 4.149396 GTGAATGTCAGTTTCTGCAAATGC 59.851 41.667 0.00 0.00 42.50 3.56
277 294 0.313672 TCTGCAAATGCGTTTGACCC 59.686 50.000 30.83 15.97 46.03 4.46
431 453 2.818751 AATTAATTCCGGGCTGTCCA 57.181 45.000 0.00 0.00 34.36 4.02
641 663 4.699925 TTGCACCTAGGAAGTTAACAGT 57.300 40.909 17.98 0.00 0.00 3.55
716 738 8.015087 TGCTTATTTTCTGAATGTTAGTTGTCG 58.985 33.333 0.00 0.00 0.00 4.35
786 808 4.437794 CGTAACGGCATGTTCTACTAGACA 60.438 45.833 0.00 0.00 42.09 3.41
983 1005 1.258982 CTTCGTCACTGTGTGCTGAAC 59.741 52.381 7.79 0.00 32.98 3.18
1378 1612 8.159344 TGTGTGTTTGTATTGTCATTGTATCA 57.841 30.769 0.00 0.00 0.00 2.15
1601 1836 9.726438 AAGATATACTGAAAATATGCCCTGTAC 57.274 33.333 0.00 0.00 0.00 2.90
1793 2030 3.181497 CCACAACGCTTCCTGGAATTATG 60.181 47.826 10.03 9.37 0.00 1.90
1796 2033 3.838244 ACGCTTCCTGGAATTATGCTA 57.162 42.857 10.03 0.00 0.00 3.49
2115 2356 5.127845 GTGATTGTTCTCTCCATACAGAGGA 59.872 44.000 0.00 0.00 40.50 3.71
2166 2407 4.168101 TCTCCAGTCCAATAGAAGTTGGT 58.832 43.478 5.65 0.00 46.92 3.67
2237 2478 1.980036 TGAACTGTAGGGGGTGGTTAC 59.020 52.381 0.00 0.00 0.00 2.50
2336 2577 3.904339 AGAAGAGCCTGAGACCTTGTTAA 59.096 43.478 0.00 0.00 0.00 2.01
2410 2651 9.034544 GTTGAGGGTTTATCATGAATATTTTGC 57.965 33.333 0.00 0.00 0.00 3.68
2418 2659 6.655078 ATCATGAATATTTTGCCTGGTACC 57.345 37.500 4.43 4.43 0.00 3.34
2539 2781 6.276832 AGCGTGTTTACTGAAATAGGAGTA 57.723 37.500 0.00 0.00 0.00 2.59
2597 2840 4.006989 TGGTAATGGTGTGATTTTCCTCG 58.993 43.478 0.00 0.00 0.00 4.63
2795 3039 6.322969 TCATCCTGGTTTCTTACGAGCTTATA 59.677 38.462 0.00 0.00 31.77 0.98
3015 3278 2.843113 AGAAGGCTGGCTGTTTCTATCT 59.157 45.455 3.84 0.00 0.00 1.98
3354 3617 8.112016 TCTGGTAGATGCTGTATACTGTATTC 57.888 38.462 13.16 1.50 0.00 1.75
3358 3621 9.765795 GGTAGATGCTGTATACTGTATTCTTTT 57.234 33.333 13.16 3.00 0.00 2.27
3481 3745 4.943705 AGGTCTACATGCTACAAATGTTGG 59.056 41.667 0.00 0.00 39.05 3.77
3502 3766 7.175990 TGTTGGTTCCTAATTATTTCTGGTGAC 59.824 37.037 0.00 0.00 0.00 3.67
3814 4091 5.068591 AGGTTCCATTTTGTTGGTACACTTC 59.931 40.000 0.00 0.00 39.29 3.01
4070 4347 2.432146 ACTCATAATGCGCTTCCTCAGA 59.568 45.455 9.73 0.00 0.00 3.27
5132 5422 1.427809 CTCCTCACCCATGCAGGATA 58.572 55.000 0.00 0.00 41.22 2.59
5279 5569 6.204882 ACAGTTACAAGTAATGCTTTGAGTCC 59.795 38.462 0.00 0.00 34.69 3.85
5289 5579 0.036875 CTTTGAGTCCTGACCCCCAC 59.963 60.000 0.00 0.00 0.00 4.61
5337 5627 3.904136 AACAGTCACAAGTAATGCAGC 57.096 42.857 0.00 0.00 0.00 5.25
5348 5638 2.093764 AGTAATGCAGCTGTGGAGTCTC 60.094 50.000 16.64 0.00 0.00 3.36
5353 5643 0.730834 CAGCTGTGGAGTCTCGAACG 60.731 60.000 5.25 0.00 0.00 3.95
5416 5707 5.464965 AAAATTACAGGTAATGCGTCGAG 57.535 39.130 5.51 0.00 36.04 4.04
5429 5720 2.045242 TCGAGTCTCGACCCCCAG 60.045 66.667 20.85 0.00 44.82 4.45
5441 5732 2.365105 CCCCAGCGGACCCTCTTA 60.365 66.667 0.00 0.00 0.00 2.10
5442 5733 2.435693 CCCCAGCGGACCCTCTTAG 61.436 68.421 0.00 0.00 0.00 2.18
5443 5734 2.435693 CCCAGCGGACCCTCTTAGG 61.436 68.421 0.00 0.00 34.30 2.69
5444 5735 2.501610 CAGCGGACCCTCTTAGGC 59.498 66.667 0.00 0.00 32.73 3.93
5445 5736 2.764547 AGCGGACCCTCTTAGGCC 60.765 66.667 0.00 0.00 32.73 5.19
5446 5737 2.764547 GCGGACCCTCTTAGGCCT 60.765 66.667 11.78 11.78 32.73 5.19
5447 5738 2.798364 GCGGACCCTCTTAGGCCTC 61.798 68.421 9.68 0.00 32.73 4.70
5448 5739 2.134933 CGGACCCTCTTAGGCCTCC 61.135 68.421 9.68 0.00 32.73 4.30
5449 5740 1.315216 GGACCCTCTTAGGCCTCCT 59.685 63.158 9.68 0.00 37.71 3.69
5450 5741 0.326713 GGACCCTCTTAGGCCTCCTT 60.327 60.000 9.68 0.00 34.61 3.36
5464 5755 3.017442 GCCTCCTTTGGTTTGTAGGATC 58.983 50.000 0.00 0.00 37.44 3.36
5479 5770 9.886132 GTTTGTAGGATCTTTGTAGGAATTCTA 57.114 33.333 5.23 0.00 0.00 2.10
5540 5831 5.248248 CCCTTTGGTTTGTAGGAATGGATTT 59.752 40.000 0.00 0.00 0.00 2.17
5578 5869 2.744352 GGAATCAATCCTTCAGGCCT 57.256 50.000 0.00 0.00 45.56 5.19
5579 5870 2.580962 GGAATCAATCCTTCAGGCCTC 58.419 52.381 0.00 0.00 45.56 4.70
5580 5871 2.580962 GAATCAATCCTTCAGGCCTCC 58.419 52.381 0.00 0.00 34.44 4.30
5581 5872 1.904440 ATCAATCCTTCAGGCCTCCT 58.096 50.000 0.00 0.00 34.44 3.69
5582 5873 1.673767 TCAATCCTTCAGGCCTCCTT 58.326 50.000 0.00 0.00 34.44 3.36
5583 5874 1.995542 TCAATCCTTCAGGCCTCCTTT 59.004 47.619 0.00 0.00 34.44 3.11
5584 5875 2.097825 CAATCCTTCAGGCCTCCTTTG 58.902 52.381 0.00 0.00 34.44 2.77
5585 5876 0.627986 ATCCTTCAGGCCTCCTTTGG 59.372 55.000 0.00 0.82 34.44 3.28
5586 5877 0.772124 TCCTTCAGGCCTCCTTTGGT 60.772 55.000 0.00 0.00 34.44 3.67
5587 5878 0.113190 CCTTCAGGCCTCCTTTGGTT 59.887 55.000 0.00 0.00 0.00 3.67
5588 5879 1.481242 CCTTCAGGCCTCCTTTGGTTT 60.481 52.381 0.00 0.00 0.00 3.27
5589 5880 2.225017 CCTTCAGGCCTCCTTTGGTTTA 60.225 50.000 0.00 0.00 0.00 2.01
5590 5881 2.879103 TCAGGCCTCCTTTGGTTTAG 57.121 50.000 0.00 0.00 0.00 1.85
5591 5882 2.344592 TCAGGCCTCCTTTGGTTTAGA 58.655 47.619 0.00 0.00 0.00 2.10
5592 5883 2.305927 TCAGGCCTCCTTTGGTTTAGAG 59.694 50.000 0.00 0.00 0.00 2.43
5601 5892 7.709149 CTCCTTTGGTTTAGAGGAATTTCAT 57.291 36.000 0.00 0.00 39.00 2.57
5602 5893 8.807948 CTCCTTTGGTTTAGAGGAATTTCATA 57.192 34.615 0.00 0.00 39.00 2.15
5603 5894 8.807948 TCCTTTGGTTTAGAGGAATTTCATAG 57.192 34.615 0.00 0.00 36.67 2.23
5604 5895 7.834181 TCCTTTGGTTTAGAGGAATTTCATAGG 59.166 37.037 0.00 0.00 36.67 2.57
5605 5896 7.834181 CCTTTGGTTTAGAGGAATTTCATAGGA 59.166 37.037 0.00 0.00 32.11 2.94
5606 5897 9.243105 CTTTGGTTTAGAGGAATTTCATAGGAA 57.757 33.333 0.00 0.00 0.00 3.36
5607 5898 9.768215 TTTGGTTTAGAGGAATTTCATAGGAAT 57.232 29.630 0.00 0.00 31.93 3.01
5608 5899 9.768215 TTGGTTTAGAGGAATTTCATAGGAATT 57.232 29.630 0.00 0.00 31.93 2.17
5609 5900 9.408648 TGGTTTAGAGGAATTTCATAGGAATTC 57.591 33.333 0.00 0.00 31.93 2.17
5610 5901 9.634021 GGTTTAGAGGAATTTCATAGGAATTCT 57.366 33.333 5.23 0.00 31.93 2.40
5615 5906 8.879227 AGAGGAATTTCATAGGAATTCTAGAGG 58.121 37.037 5.23 0.00 31.93 3.69
5616 5907 8.805145 AGGAATTTCATAGGAATTCTAGAGGA 57.195 34.615 5.23 0.00 31.93 3.71
5617 5908 9.404077 AGGAATTTCATAGGAATTCTAGAGGAT 57.596 33.333 5.23 0.00 31.93 3.24
5624 5915 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
5625 5916 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
5639 5930 9.654919 AGGATAGGATTCTTATAGGATTAGAGC 57.345 37.037 0.00 0.00 0.00 4.09
5640 5931 8.866093 GGATAGGATTCTTATAGGATTAGAGCC 58.134 40.741 0.00 0.00 0.00 4.70
5641 5932 8.791298 ATAGGATTCTTATAGGATTAGAGCCC 57.209 38.462 0.00 0.00 0.00 5.19
5642 5933 6.821289 AGGATTCTTATAGGATTAGAGCCCT 58.179 40.000 0.00 0.00 36.60 5.19
5643 5934 7.260140 AGGATTCTTATAGGATTAGAGCCCTT 58.740 38.462 0.00 0.00 34.11 3.95
5644 5935 7.741750 AGGATTCTTATAGGATTAGAGCCCTTT 59.258 37.037 0.00 0.00 34.11 3.11
5645 5936 7.826744 GGATTCTTATAGGATTAGAGCCCTTTG 59.173 40.741 0.00 0.00 34.11 2.77
5646 5937 6.688073 TCTTATAGGATTAGAGCCCTTTGG 57.312 41.667 0.00 0.00 34.11 3.28
5647 5938 6.151049 TCTTATAGGATTAGAGCCCTTTGGT 58.849 40.000 0.00 0.00 34.11 3.67
5648 5939 6.619852 TCTTATAGGATTAGAGCCCTTTGGTT 59.380 38.462 0.00 0.00 34.11 3.67
5649 5940 3.653835 AGGATTAGAGCCCTTTGGTTC 57.346 47.619 0.00 0.00 41.91 3.62
5650 5941 2.919602 AGGATTAGAGCCCTTTGGTTCA 59.080 45.455 0.00 0.00 43.89 3.18
5651 5942 3.529319 AGGATTAGAGCCCTTTGGTTCAT 59.471 43.478 0.00 0.00 43.89 2.57
5652 5943 4.726825 AGGATTAGAGCCCTTTGGTTCATA 59.273 41.667 0.00 0.00 43.89 2.15
5653 5944 5.066593 GGATTAGAGCCCTTTGGTTCATAG 58.933 45.833 0.00 0.00 43.89 2.23
5654 5945 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
5655 5946 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
5656 5947 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
5657 5948 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
5658 5949 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
5659 5950 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
5660 5951 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
5661 5952 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
5662 5953 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
5663 5954 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
5697 5988 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
5698 5989 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
5699 5990 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
5700 5991 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
5701 5992 4.503714 TTGGTTCCTATCCTCCACATTC 57.496 45.455 0.00 0.00 0.00 2.67
5702 5993 2.777692 TGGTTCCTATCCTCCACATTCC 59.222 50.000 0.00 0.00 0.00 3.01
5703 5994 2.777692 GGTTCCTATCCTCCACATTCCA 59.222 50.000 0.00 0.00 0.00 3.53
5704 5995 3.395941 GGTTCCTATCCTCCACATTCCAT 59.604 47.826 0.00 0.00 0.00 3.41
5705 5996 4.597507 GGTTCCTATCCTCCACATTCCATA 59.402 45.833 0.00 0.00 0.00 2.74
5706 5997 5.280215 GGTTCCTATCCTCCACATTCCATAG 60.280 48.000 0.00 0.00 0.00 2.23
5707 5998 4.429505 TCCTATCCTCCACATTCCATAGG 58.570 47.826 0.00 0.00 35.93 2.57
5708 5999 4.109600 TCCTATCCTCCACATTCCATAGGA 59.890 45.833 2.01 2.01 39.61 2.94
5709 6000 4.846367 CCTATCCTCCACATTCCATAGGAA 59.154 45.833 0.30 0.30 46.39 3.36
5710 6001 5.310594 CCTATCCTCCACATTCCATAGGAAA 59.689 44.000 2.16 0.00 45.41 3.13
5711 6002 5.732331 ATCCTCCACATTCCATAGGAAAA 57.268 39.130 2.16 0.00 45.41 2.29
5712 6003 5.732331 TCCTCCACATTCCATAGGAAAAT 57.268 39.130 2.16 0.00 45.41 1.82
5713 6004 6.840090 TCCTCCACATTCCATAGGAAAATA 57.160 37.500 2.16 0.00 45.41 1.40
5714 6005 7.219601 TCCTCCACATTCCATAGGAAAATAA 57.780 36.000 2.16 0.00 45.41 1.40
5715 6006 7.647827 TCCTCCACATTCCATAGGAAAATAAA 58.352 34.615 2.16 0.00 45.41 1.40
5716 6007 8.119246 TCCTCCACATTCCATAGGAAAATAAAA 58.881 33.333 2.16 0.00 45.41 1.52
5717 6008 8.757877 CCTCCACATTCCATAGGAAAATAAAAA 58.242 33.333 2.16 0.00 45.41 1.94
5736 6027 5.505181 AAAAAGAGCCTAGACTCAATGGA 57.495 39.130 8.89 0.00 39.26 3.41
5737 6028 5.505181 AAAAGAGCCTAGACTCAATGGAA 57.495 39.130 8.89 0.00 39.26 3.53
5738 6029 5.505181 AAAGAGCCTAGACTCAATGGAAA 57.495 39.130 8.89 0.00 39.26 3.13
5739 6030 5.505181 AAGAGCCTAGACTCAATGGAAAA 57.495 39.130 8.89 0.00 39.26 2.29
5740 6031 5.505181 AGAGCCTAGACTCAATGGAAAAA 57.495 39.130 8.89 0.00 39.26 1.94
5741 6032 5.495640 AGAGCCTAGACTCAATGGAAAAAG 58.504 41.667 8.89 0.00 39.26 2.27
5742 6033 5.013599 AGAGCCTAGACTCAATGGAAAAAGT 59.986 40.000 8.89 0.00 39.26 2.66
5743 6034 5.249420 AGCCTAGACTCAATGGAAAAAGTC 58.751 41.667 0.00 0.00 38.71 3.01
5744 6035 7.569016 GAGCCTAGACTCAATGGAAAAAGTCC 61.569 46.154 0.51 0.00 40.63 3.85
5745 6036 9.636348 GAGCCTAGACTCAATGGAAAAAGTCCT 62.636 44.444 0.51 0.00 40.75 3.85
5757 6048 5.289595 GGAAAAAGTCCTTTGATGTCAACC 58.710 41.667 0.00 0.00 43.98 3.77
5758 6049 5.163457 GGAAAAAGTCCTTTGATGTCAACCA 60.163 40.000 0.00 0.00 43.98 3.67
5759 6050 5.930837 AAAAGTCCTTTGATGTCAACCAA 57.069 34.783 0.00 0.00 35.28 3.67
5760 6051 5.930837 AAAGTCCTTTGATGTCAACCAAA 57.069 34.783 0.00 4.41 35.28 3.28
5761 6052 6.484364 AAAGTCCTTTGATGTCAACCAAAT 57.516 33.333 0.00 0.00 35.28 2.32
5762 6053 5.458041 AGTCCTTTGATGTCAACCAAATG 57.542 39.130 0.00 3.42 35.28 2.32
5763 6054 5.139727 AGTCCTTTGATGTCAACCAAATGA 58.860 37.500 0.00 5.19 35.28 2.57
5775 6066 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
5776 6067 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
5777 6068 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
5778 6069 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
5779 6070 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
5780 6071 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
5781 6072 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
5782 6073 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
5783 6074 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
5784 6075 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
5785 6076 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
5786 6077 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
5787 6078 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
5788 6079 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
5789 6080 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
5790 6081 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
5807 6098 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
5808 6099 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
5809 6100 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
5810 6101 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
5811 6102 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
5812 6103 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
5821 6112 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
5822 6113 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
5823 6114 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
5824 6115 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
5825 6116 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
5826 6117 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
5827 6118 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
5828 6119 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
5829 6120 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
5830 6121 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
5831 6122 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
5832 6123 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
5833 6124 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
5835 6126 8.432805 TCTCATTTCCTACAAGATTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
5836 6127 8.337118 TCATTTCCTACAAGATTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
5837 6128 9.447279 TCATTTCCTACAAGATTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
5840 6131 9.447279 TTTCCTACAAGATTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
5841 6132 9.621239 TTCCTACAAGATTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
5859 6150 9.661954 TCCTATGATAATCCTATCCTATGAACC 57.338 37.037 0.00 0.00 34.10 3.62
5860 6151 9.439461 CCTATGATAATCCTATCCTATGAACCA 57.561 37.037 0.00 0.00 34.10 3.67
5867 6158 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
5868 6159 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
5869 6160 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
5870 6161 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
5871 6162 3.054361 TCCTATGAACCAAAAGAGGCCTC 60.054 47.826 26.22 26.22 0.00 4.70
5872 6163 2.978156 ATGAACCAAAAGAGGCCTCA 57.022 45.000 33.90 11.83 0.00 3.86
5873 6164 2.746279 TGAACCAAAAGAGGCCTCAA 57.254 45.000 33.90 5.39 0.00 3.02
5914 6205 5.191722 ACCATTAGCCTAGACTCAATGGAAA 59.808 40.000 22.22 0.00 45.57 3.13
5915 6206 6.122277 CCATTAGCCTAGACTCAATGGAAAA 58.878 40.000 15.72 0.00 45.57 2.29
5916 6207 6.603201 CCATTAGCCTAGACTCAATGGAAAAA 59.397 38.462 15.72 0.00 45.57 1.94
6336 6627 6.992715 CCGTAATCCTCATCATCCTAACTTTT 59.007 38.462 0.00 0.00 0.00 2.27
6433 6728 3.140144 CCCCCTCCTCAAAATATAAGGCA 59.860 47.826 0.00 0.00 0.00 4.75
6459 6754 5.444122 CGTTGACTTTTCTTGTCTTCATCC 58.556 41.667 0.00 0.00 35.63 3.51
6638 6935 0.593128 GACCGTGCAAAGTCAAGCAT 59.407 50.000 11.50 0.00 43.44 3.79
6660 6960 3.117284 TGCCTTATATTTTGGGGAGGGAC 60.117 47.826 0.00 0.00 0.00 4.46
6689 6989 9.950680 CTTTTTATGATGTCAAGTAACAAGTGT 57.049 29.630 0.00 0.00 31.81 3.55
6917 7217 3.477530 AGTTAAGCCAGTTCAGTGGTTC 58.522 45.455 2.57 0.00 40.09 3.62
6941 7241 7.044181 TCATAGATCTGGCAAGACACTTTTAG 58.956 38.462 5.18 0.00 34.48 1.85
7003 7305 0.032217 AAGGGCATGTACAATGGGGG 60.032 55.000 0.00 0.00 0.00 5.40
7024 7326 3.320626 GTGATTTCAGCCTTTTCCTTGC 58.679 45.455 0.00 0.00 0.00 4.01
7096 7398 9.232473 TCTCTTAGCGCTTGAGATAAGATATTA 57.768 33.333 27.68 10.80 44.72 0.98
7189 7491 7.093814 TGCATGCAAAAATTAACCACTAGAGAT 60.094 33.333 20.30 0.00 0.00 2.75
7256 7558 6.136857 TCTCTAGATAGCTAAGAAAAGGCCA 58.863 40.000 5.01 0.00 0.00 5.36
7438 7740 5.149584 TGATTCATCTTCTACTCCCTCCT 57.850 43.478 0.00 0.00 0.00 3.69
7444 7746 6.683537 TCATCTTCTACTCCCTCCTTTCATA 58.316 40.000 0.00 0.00 0.00 2.15
7735 8038 2.020720 ACAGTCGCAACCAACAAATGA 58.979 42.857 0.00 0.00 0.00 2.57
7968 8271 2.036992 GACAATGGTGGCCATGAAAACA 59.963 45.455 9.72 0.00 44.40 2.83
7980 8283 4.094739 GCCATGAAAACAACAAAACAAGCT 59.905 37.500 0.00 0.00 0.00 3.74
8073 8376 2.361610 CCAGGCCCAGCGACAAAT 60.362 61.111 0.00 0.00 0.00 2.32
8317 8620 6.627087 ACTTGAGAGGGAATTAGAACATGA 57.373 37.500 0.00 0.00 0.00 3.07
8474 8779 1.809547 GAAAGAGGCTGAAGTTCTGGC 59.190 52.381 23.49 23.49 40.37 4.85
8482 8787 1.466167 CTGAAGTTCTGGCGGACATTG 59.534 52.381 4.17 0.00 0.00 2.82
8627 8932 0.323629 AAAATGCCTCGACCCGAAGA 59.676 50.000 0.00 0.00 34.74 2.87
8654 8961 5.497464 TGGGTCAGAATTGATGTAGAACA 57.503 39.130 0.00 0.00 35.39 3.18
8678 8985 5.934402 ACACTTGGTAGAATTCTCGGTAT 57.066 39.130 12.24 0.00 0.00 2.73
8727 9034 2.182827 AGCTGCTCTGGACTGTTGATA 58.817 47.619 0.00 0.00 0.00 2.15
8823 9132 0.679321 GGTCTCTACCGGGTCGAGTT 60.679 60.000 23.38 0.00 35.62 3.01
8827 9136 2.029649 TCTCTACCGGGTCGAGTTTTTG 60.030 50.000 23.38 3.41 29.27 2.44
8966 9293 8.856153 TCTAAAAAGCCTCATAATTGTACACA 57.144 30.769 0.00 0.00 0.00 3.72
9025 9352 6.125029 AGATCTCATCCAATTTTCAATCCGT 58.875 36.000 0.00 0.00 0.00 4.69
9067 9394 4.084328 GCTATATTTGTGGTCGCACTGATC 60.084 45.833 0.00 0.00 0.00 2.92
9073 9400 2.094700 TGTGGTCGCACTGATCTTCTAC 60.095 50.000 0.00 0.00 0.00 2.59
9178 12486 0.975887 TCCCAAGGCCAAATGCTTTC 59.024 50.000 5.01 0.00 37.12 2.62
9215 12523 1.810031 CGCACAAGGTTCTCCAACTGA 60.810 52.381 0.00 0.00 35.89 3.41
9353 12661 1.200020 CGTCAGGCTTTCCACATTTCC 59.800 52.381 0.00 0.00 33.74 3.13
9357 12665 0.243636 GGCTTTCCACATTTCCCACG 59.756 55.000 0.00 0.00 0.00 4.94
9387 12695 5.422666 TGAGTAACAACAGAATGCACAAG 57.577 39.130 0.00 0.00 42.53 3.16
9388 12696 4.275689 TGAGTAACAACAGAATGCACAAGG 59.724 41.667 0.00 0.00 42.53 3.61
9389 12697 3.569701 AGTAACAACAGAATGCACAAGGG 59.430 43.478 0.00 0.00 42.53 3.95
9390 12698 2.363306 ACAACAGAATGCACAAGGGA 57.637 45.000 0.00 0.00 42.53 4.20
9391 12699 2.665165 ACAACAGAATGCACAAGGGAA 58.335 42.857 0.00 0.00 42.53 3.97
9392 12700 2.362077 ACAACAGAATGCACAAGGGAAC 59.638 45.455 0.00 0.00 42.53 3.62
9410 12718 2.468532 CGTTTGTAGACGGTGCGC 59.531 61.111 0.00 0.00 39.27 6.09
9411 12719 2.858158 GTTTGTAGACGGTGCGCC 59.142 61.111 6.11 6.11 0.00 6.53
9412 12720 1.957186 GTTTGTAGACGGTGCGCCA 60.957 57.895 18.18 0.00 34.09 5.69
9413 12721 1.666553 TTTGTAGACGGTGCGCCAG 60.667 57.895 18.18 11.69 34.09 4.85
9414 12722 4.735132 TGTAGACGGTGCGCCAGC 62.735 66.667 18.18 7.22 45.41 4.85
9447 12755 4.794439 TCGCACGCGATCCACAGG 62.794 66.667 15.93 0.00 44.01 4.00
9448 12756 4.794439 CGCACGCGATCCACAGGA 62.794 66.667 15.93 0.00 42.83 3.86
9449 12757 2.202932 GCACGCGATCCACAGGAT 60.203 61.111 15.93 0.00 46.28 3.24
9457 12765 1.816537 ATCCACAGGATCCGTCACG 59.183 57.895 5.98 0.00 38.09 4.35
9458 12766 2.298158 ATCCACAGGATCCGTCACGC 62.298 60.000 5.98 0.00 38.09 5.34
9459 12767 2.880879 CACAGGATCCGTCACGCG 60.881 66.667 3.53 3.53 40.95 6.01
9460 12768 3.371063 ACAGGATCCGTCACGCGT 61.371 61.111 5.58 5.58 39.32 6.01
9461 12769 2.579787 CAGGATCCGTCACGCGTC 60.580 66.667 9.86 0.00 39.32 5.19
9462 12770 3.823330 AGGATCCGTCACGCGTCC 61.823 66.667 9.86 5.63 39.32 4.79
9463 12771 4.867599 GGATCCGTCACGCGTCCC 62.868 72.222 9.86 0.70 39.32 4.46
9464 12772 3.823330 GATCCGTCACGCGTCCCT 61.823 66.667 9.86 0.00 39.32 4.20
9465 12773 3.352338 GATCCGTCACGCGTCCCTT 62.352 63.158 9.86 0.00 39.32 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 75 6.701400 CAGCAAGTTGTTATTTTAGCCAAACT 59.299 34.615 4.48 0.00 0.00 2.66
302 319 3.763360 CCTTTATTCCAACATGCCACTGA 59.237 43.478 0.00 0.00 0.00 3.41
431 453 5.457633 GCCAAGGGTATCCACTGGTTAATAT 60.458 44.000 13.30 0.00 39.30 1.28
708 730 1.753930 TCGATGGGCTACGACAACTA 58.246 50.000 0.00 0.00 33.62 2.24
786 808 9.965824 CAATAACTGAACTGTTGGTAAGAATTT 57.034 29.630 0.00 0.00 0.00 1.82
983 1005 2.550978 CCATGTAAGCTCCCAACTACG 58.449 52.381 0.00 0.00 0.00 3.51
1315 1549 1.278127 TCTGGTTGGGTAAGTAGCAGC 59.722 52.381 0.00 0.00 37.33 5.25
1378 1612 7.472334 AAAACACATCAGGAGAAGCAATTAT 57.528 32.000 0.00 0.00 0.00 1.28
1601 1836 1.176527 AAAATGCCAGACCACCATCG 58.823 50.000 0.00 0.00 0.00 3.84
1718 1953 7.088589 AGATACGAGCACAGCAATTTTTATT 57.911 32.000 0.00 0.00 0.00 1.40
2012 2252 9.905713 AACTATGAGGCAAAGAACAGAATATTA 57.094 29.630 0.00 0.00 0.00 0.98
2013 2253 8.814038 AACTATGAGGCAAAGAACAGAATATT 57.186 30.769 0.00 0.00 0.00 1.28
2336 2577 4.526970 CCCACCTGTGAACTGCTATTTAT 58.473 43.478 0.00 0.00 0.00 1.40
2370 2611 1.676006 CCTCAACCCCGCATAATTGAC 59.324 52.381 0.00 0.00 0.00 3.18
2410 2651 0.320374 TGTTTGAGAGCGGTACCAGG 59.680 55.000 13.54 0.00 0.00 4.45
2418 2659 1.597854 TGCTGGGTGTTTGAGAGCG 60.598 57.895 0.00 0.00 32.05 5.03
2539 2781 8.509690 CAGATAAGAACACAAGAAATCACATGT 58.490 33.333 0.00 0.00 0.00 3.21
2708 2952 3.004629 CCAAGAACATGCAAACAGTAGCA 59.995 43.478 3.30 3.30 45.92 3.49
2795 3039 3.698040 CAGCAGCAGGATCCTTTTTATGT 59.302 43.478 13.00 0.00 0.00 2.29
2979 3242 3.873910 GCCTTCTACTGGCTATGTTTCA 58.126 45.455 0.00 0.00 46.38 2.69
3015 3278 7.020827 ACTGATGAGAAAAGGTTAGGATTCA 57.979 36.000 0.00 0.00 0.00 2.57
3481 3745 7.494625 TCATCGTCACCAGAAATAATTAGGAAC 59.505 37.037 0.00 0.00 0.00 3.62
3800 4077 6.367695 CGACAGAATATGAAGTGTACCAACAA 59.632 38.462 0.00 0.00 37.36 2.83
3814 4091 8.729756 AGAGAAGATCTACATCGACAGAATATG 58.270 37.037 0.00 0.00 36.10 1.78
4070 4347 5.486735 TCATTGACAAAATTCCAGGCAAT 57.513 34.783 0.00 1.24 0.00 3.56
4459 4745 4.447138 ACACATAAAAAGGTGAGTCCCA 57.553 40.909 0.00 0.00 38.38 4.37
4528 4814 7.870954 TGTCCAAGTCATTGTACACTTACTTAG 59.129 37.037 11.19 6.08 31.07 2.18
4529 4815 7.728148 TGTCCAAGTCATTGTACACTTACTTA 58.272 34.615 11.19 0.00 31.07 2.24
4530 4816 6.588204 TGTCCAAGTCATTGTACACTTACTT 58.412 36.000 6.90 6.90 31.07 2.24
4531 4817 6.169557 TGTCCAAGTCATTGTACACTTACT 57.830 37.500 0.00 0.00 31.07 2.24
4532 4818 7.435068 AATGTCCAAGTCATTGTACACTTAC 57.565 36.000 0.00 0.00 37.98 2.34
4533 4819 7.500892 ACAAATGTCCAAGTCATTGTACACTTA 59.499 33.333 0.00 0.00 37.98 2.24
4534 4820 6.321181 ACAAATGTCCAAGTCATTGTACACTT 59.679 34.615 0.00 0.00 37.98 3.16
4535 4821 5.827797 ACAAATGTCCAAGTCATTGTACACT 59.172 36.000 0.00 0.00 37.98 3.55
4646 4932 8.420222 AGACACATCCAAATGATTGTTTAACAA 58.580 29.630 13.12 13.12 38.16 2.83
4657 4943 4.583907 TGAAGCAAAGACACATCCAAATGA 59.416 37.500 0.00 0.00 36.67 2.57
4835 5122 5.827267 TGATCTGGAACACATTGACTCAAAA 59.173 36.000 0.00 0.00 0.00 2.44
5018 5306 1.745087 GATTTTCTGCGCTCATGGGAA 59.255 47.619 9.73 0.86 0.00 3.97
5289 5579 0.748450 TAAACCATAGGAGCGTCCGG 59.252 55.000 0.00 0.00 42.75 5.14
5323 5613 2.153645 TCCACAGCTGCATTACTTGTG 58.846 47.619 15.27 6.44 0.00 3.33
5336 5626 2.089349 GCGTTCGAGACTCCACAGC 61.089 63.158 0.00 0.00 0.00 4.40
5337 5627 1.444553 GGCGTTCGAGACTCCACAG 60.445 63.158 0.00 0.00 33.18 3.66
5348 5638 2.027625 GAGGGTCAAGTGGCGTTCG 61.028 63.158 0.00 0.00 0.00 3.95
5353 5643 2.861147 ACTAAAGAGGGTCAAGTGGC 57.139 50.000 0.00 0.00 0.00 5.01
5429 5720 2.764547 AGGCCTAAGAGGGTCCGC 60.765 66.667 1.29 0.00 35.37 5.54
5432 5723 1.210722 CAAAGGAGGCCTAAGAGGGTC 59.789 57.143 4.42 0.00 35.37 4.46
5433 5724 1.290134 CAAAGGAGGCCTAAGAGGGT 58.710 55.000 4.42 0.00 35.37 4.34
5435 5726 1.290134 ACCAAAGGAGGCCTAAGAGG 58.710 55.000 4.42 7.26 38.80 3.69
5436 5727 3.084786 CAAACCAAAGGAGGCCTAAGAG 58.915 50.000 4.42 0.00 31.13 2.85
5437 5728 2.445525 ACAAACCAAAGGAGGCCTAAGA 59.554 45.455 4.42 0.00 31.13 2.10
5438 5729 2.876581 ACAAACCAAAGGAGGCCTAAG 58.123 47.619 4.42 0.00 31.13 2.18
5439 5730 3.245122 CCTACAAACCAAAGGAGGCCTAA 60.245 47.826 4.42 0.00 31.13 2.69
5440 5731 2.307686 CCTACAAACCAAAGGAGGCCTA 59.692 50.000 4.42 0.00 31.13 3.93
5441 5732 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
5442 5733 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
5443 5734 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
5444 5735 4.576330 AGATCCTACAAACCAAAGGAGG 57.424 45.455 0.00 0.00 42.53 4.30
5445 5736 5.770162 ACAAAGATCCTACAAACCAAAGGAG 59.230 40.000 0.00 0.00 42.53 3.69
5446 5737 5.701224 ACAAAGATCCTACAAACCAAAGGA 58.299 37.500 0.00 0.00 43.38 3.36
5447 5738 6.151144 CCTACAAAGATCCTACAAACCAAAGG 59.849 42.308 0.00 0.00 0.00 3.11
5448 5739 6.940298 TCCTACAAAGATCCTACAAACCAAAG 59.060 38.462 0.00 0.00 0.00 2.77
5449 5740 6.843752 TCCTACAAAGATCCTACAAACCAAA 58.156 36.000 0.00 0.00 0.00 3.28
5450 5741 6.442541 TCCTACAAAGATCCTACAAACCAA 57.557 37.500 0.00 0.00 0.00 3.67
5479 5770 7.732222 TTTTCCTTTGCAAATCCTACCATAT 57.268 32.000 13.23 0.00 0.00 1.78
5482 5773 5.878406 TTTTTCCTTTGCAAATCCTACCA 57.122 34.783 13.23 0.00 0.00 3.25
5484 5775 7.364522 GGAATTTTTCCTTTGCAAATCCTAC 57.635 36.000 13.23 0.00 46.57 3.18
5574 5865 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
5575 5866 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
5576 5867 6.010219 TGAAATTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
5577 5868 7.709149 ATGAAATTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
5578 5869 7.834181 CCTATGAAATTCCTCTAAACCAAAGGA 59.166 37.037 0.00 0.00 37.42 3.36
5579 5870 7.834181 TCCTATGAAATTCCTCTAAACCAAAGG 59.166 37.037 0.00 0.00 0.00 3.11
5580 5871 8.807948 TCCTATGAAATTCCTCTAAACCAAAG 57.192 34.615 0.00 0.00 0.00 2.77
5581 5872 9.768215 ATTCCTATGAAATTCCTCTAAACCAAA 57.232 29.630 0.00 0.00 33.32 3.28
5582 5873 9.768215 AATTCCTATGAAATTCCTCTAAACCAA 57.232 29.630 0.00 0.00 33.32 3.67
5583 5874 9.408648 GAATTCCTATGAAATTCCTCTAAACCA 57.591 33.333 0.00 0.00 33.32 3.67
5584 5875 9.634021 AGAATTCCTATGAAATTCCTCTAAACC 57.366 33.333 0.65 0.00 33.32 3.27
5589 5880 8.879227 CCTCTAGAATTCCTATGAAATTCCTCT 58.121 37.037 0.65 0.00 33.32 3.69
5590 5881 8.875168 TCCTCTAGAATTCCTATGAAATTCCTC 58.125 37.037 0.65 0.00 33.32 3.71
5591 5882 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
5598 5889 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
5599 5890 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
5613 5904 9.654919 GCTCTAATCCTATAAGAATCCTATCCT 57.345 37.037 0.00 0.00 0.00 3.24
5614 5905 8.866093 GGCTCTAATCCTATAAGAATCCTATCC 58.134 40.741 0.00 0.00 0.00 2.59
5615 5906 8.866093 GGGCTCTAATCCTATAAGAATCCTATC 58.134 40.741 0.00 0.00 0.00 2.08
5616 5907 8.582799 AGGGCTCTAATCCTATAAGAATCCTAT 58.417 37.037 0.00 0.00 0.00 2.57
5617 5908 7.956357 AGGGCTCTAATCCTATAAGAATCCTA 58.044 38.462 0.00 0.00 0.00 2.94
5618 5909 6.821289 AGGGCTCTAATCCTATAAGAATCCT 58.179 40.000 0.00 0.00 0.00 3.24
5619 5910 7.503492 AAGGGCTCTAATCCTATAAGAATCC 57.497 40.000 0.00 0.00 32.21 3.01
5620 5911 7.826744 CCAAAGGGCTCTAATCCTATAAGAATC 59.173 40.741 0.00 0.00 32.21 2.52
5621 5912 7.295911 ACCAAAGGGCTCTAATCCTATAAGAAT 59.704 37.037 0.00 0.00 37.90 2.40
5622 5913 6.619852 ACCAAAGGGCTCTAATCCTATAAGAA 59.380 38.462 0.00 0.00 37.90 2.52
5623 5914 6.151049 ACCAAAGGGCTCTAATCCTATAAGA 58.849 40.000 0.00 0.00 37.90 2.10
5624 5915 6.441088 ACCAAAGGGCTCTAATCCTATAAG 57.559 41.667 0.00 0.00 37.90 1.73
5625 5916 6.388689 TGAACCAAAGGGCTCTAATCCTATAA 59.611 38.462 0.00 0.00 37.90 0.98
5626 5917 5.908831 TGAACCAAAGGGCTCTAATCCTATA 59.091 40.000 0.00 0.00 37.90 1.31
5627 5918 4.726825 TGAACCAAAGGGCTCTAATCCTAT 59.273 41.667 0.00 0.00 37.90 2.57
5628 5919 4.108570 TGAACCAAAGGGCTCTAATCCTA 58.891 43.478 0.00 0.00 37.90 2.94
5629 5920 2.919602 TGAACCAAAGGGCTCTAATCCT 59.080 45.455 0.00 0.00 37.90 3.24
5630 5921 3.366052 TGAACCAAAGGGCTCTAATCC 57.634 47.619 0.00 0.00 37.90 3.01
5631 5922 5.066593 CCTATGAACCAAAGGGCTCTAATC 58.933 45.833 0.00 0.00 37.90 1.75
5632 5923 4.726825 TCCTATGAACCAAAGGGCTCTAAT 59.273 41.667 0.00 0.00 37.90 1.73
5633 5924 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
5634 5925 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
5635 5926 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
5636 5927 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
5637 5928 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
5638 5929 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
5639 5930 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
5640 5931 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
5678 5969 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
5679 5970 4.141158 GGAATGTGGAGGATAGGAACCAAT 60.141 45.833 0.00 0.00 34.11 3.16
5680 5971 3.202151 GGAATGTGGAGGATAGGAACCAA 59.798 47.826 0.00 0.00 34.11 3.67
5681 5972 2.777692 GGAATGTGGAGGATAGGAACCA 59.222 50.000 0.00 0.00 0.00 3.67
5682 5973 2.777692 TGGAATGTGGAGGATAGGAACC 59.222 50.000 0.00 0.00 0.00 3.62
5683 5974 4.713792 ATGGAATGTGGAGGATAGGAAC 57.286 45.455 0.00 0.00 0.00 3.62
5684 5975 4.846367 CCTATGGAATGTGGAGGATAGGAA 59.154 45.833 0.00 0.00 36.16 3.36
5685 5976 4.109600 TCCTATGGAATGTGGAGGATAGGA 59.890 45.833 0.00 0.00 39.29 2.94
5686 5977 4.429505 TCCTATGGAATGTGGAGGATAGG 58.570 47.826 0.00 0.00 35.64 2.57
5687 5978 6.439636 TTTCCTATGGAATGTGGAGGATAG 57.560 41.667 0.00 0.00 41.71 2.08
5688 5979 6.840090 TTTTCCTATGGAATGTGGAGGATA 57.160 37.500 0.00 0.00 41.71 2.59
5689 5980 5.732331 TTTTCCTATGGAATGTGGAGGAT 57.268 39.130 0.00 0.00 41.71 3.24
5690 5981 5.732331 ATTTTCCTATGGAATGTGGAGGA 57.268 39.130 0.00 0.00 41.71 3.71
5691 5982 7.896383 TTTATTTTCCTATGGAATGTGGAGG 57.104 36.000 0.00 0.00 41.71 4.30
5714 6005 5.505181 TCCATTGAGTCTAGGCTCTTTTT 57.495 39.130 24.20 4.72 36.51 1.94
5715 6006 5.505181 TTCCATTGAGTCTAGGCTCTTTT 57.495 39.130 24.20 7.12 36.51 2.27
5716 6007 5.505181 TTTCCATTGAGTCTAGGCTCTTT 57.495 39.130 24.20 9.56 36.51 2.52
5717 6008 5.505181 TTTTCCATTGAGTCTAGGCTCTT 57.495 39.130 24.20 9.92 36.51 2.85
5718 6009 5.013599 ACTTTTTCCATTGAGTCTAGGCTCT 59.986 40.000 24.20 2.95 36.51 4.09
5719 6010 5.249420 ACTTTTTCCATTGAGTCTAGGCTC 58.751 41.667 17.74 17.74 36.12 4.70
5720 6011 5.248380 ACTTTTTCCATTGAGTCTAGGCT 57.752 39.130 0.00 0.00 0.00 4.58
5721 6012 4.396478 GGACTTTTTCCATTGAGTCTAGGC 59.604 45.833 0.00 0.00 45.10 3.93
5734 6025 5.163457 TGGTTGACATCAAAGGACTTTTTCC 60.163 40.000 0.00 0.00 46.33 3.13
5735 6026 5.901552 TGGTTGACATCAAAGGACTTTTTC 58.098 37.500 0.00 0.00 37.63 2.29
5736 6027 5.930837 TGGTTGACATCAAAGGACTTTTT 57.069 34.783 0.00 0.00 37.63 1.94
5737 6028 5.930837 TTGGTTGACATCAAAGGACTTTT 57.069 34.783 0.00 0.00 37.63 2.27
5738 6029 5.930837 TTTGGTTGACATCAAAGGACTTT 57.069 34.783 0.00 0.00 37.63 2.66
5739 6030 5.598005 TCATTTGGTTGACATCAAAGGACTT 59.402 36.000 12.16 0.00 38.29 3.01
5740 6031 5.139727 TCATTTGGTTGACATCAAAGGACT 58.860 37.500 12.16 0.00 38.29 3.85
5741 6032 5.452078 TCATTTGGTTGACATCAAAGGAC 57.548 39.130 12.16 0.00 38.29 3.85
5742 6033 5.452078 GTCATTTGGTTGACATCAAAGGA 57.548 39.130 12.16 12.16 44.38 3.36
5751 6042 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
5752 6043 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
5753 6044 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
5754 6045 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
5755 6046 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
5756 6047 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
5757 6048 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
5758 6049 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
5759 6050 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
5760 6051 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
5761 6052 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
5762 6053 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
5763 6054 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
5764 6055 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
5781 6072 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
5782 6073 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
5783 6074 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
5784 6075 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
5785 6076 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
5786 6077 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
5796 6087 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
5797 6088 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
5798 6089 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
5799 6090 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
5800 6091 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
5801 6092 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
5802 6093 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
5803 6094 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
5804 6095 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
5805 6096 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
5806 6097 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
5807 6098 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
5809 6100 8.432805 GGAATAGGAATCTTGTAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
5810 6101 8.435982 AGGAATAGGAATCTTGTAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
5811 6102 8.337118 AGGAATAGGAATCTTGTAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
5814 6105 9.447279 TCATAGGAATAGGAATCTTGTAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
5815 6106 9.621239 ATCATAGGAATAGGAATCTTGTAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
5833 6124 9.661954 GGTTCATAGGATAGGATTATCATAGGA 57.338 37.037 0.00 1.09 39.88 2.94
5834 6125 9.439461 TGGTTCATAGGATAGGATTATCATAGG 57.561 37.037 0.00 0.00 36.37 2.57
5841 6132 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
5842 6133 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
5843 6134 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
5844 6135 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
5845 6136 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
5846 6137 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
5847 6138 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
5848 6139 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
5849 6140 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
5850 6141 3.282885 GAGGCCTCTTTTGGTTCATAGG 58.717 50.000 26.25 0.00 0.00 2.57
5851 6142 3.955471 TGAGGCCTCTTTTGGTTCATAG 58.045 45.455 32.28 0.00 0.00 2.23
5852 6143 4.380843 TTGAGGCCTCTTTTGGTTCATA 57.619 40.909 32.28 5.57 0.00 2.15
5853 6144 2.978156 TGAGGCCTCTTTTGGTTCAT 57.022 45.000 32.28 0.00 0.00 2.57
5854 6145 2.746279 TTGAGGCCTCTTTTGGTTCA 57.254 45.000 32.28 7.92 0.00 3.18
5855 6146 4.607293 AATTTGAGGCCTCTTTTGGTTC 57.393 40.909 32.28 5.03 0.00 3.62
5856 6147 5.125356 CAAAATTTGAGGCCTCTTTTGGTT 58.875 37.500 31.99 19.72 32.90 3.67
5857 6148 4.444733 CCAAAATTTGAGGCCTCTTTTGGT 60.445 41.667 39.21 22.11 41.94 3.67
5858 6149 4.067192 CCAAAATTTGAGGCCTCTTTTGG 58.933 43.478 37.77 37.77 41.57 3.28
5859 6150 4.959723 TCCAAAATTTGAGGCCTCTTTTG 58.040 39.130 32.34 32.34 34.64 2.44
5860 6151 4.040829 CCTCCAAAATTTGAGGCCTCTTTT 59.959 41.667 32.28 25.43 0.00 2.27
5861 6152 3.580022 CCTCCAAAATTTGAGGCCTCTTT 59.420 43.478 32.28 21.44 0.00 2.52
5862 6153 3.168292 CCTCCAAAATTTGAGGCCTCTT 58.832 45.455 32.28 16.70 0.00 2.85
5863 6154 2.379907 TCCTCCAAAATTTGAGGCCTCT 59.620 45.455 32.28 10.99 34.95 3.69
5864 6155 2.807676 TCCTCCAAAATTTGAGGCCTC 58.192 47.619 26.78 26.78 34.95 4.70
5865 6156 2.999185 TCCTCCAAAATTTGAGGCCT 57.001 45.000 3.86 3.86 34.95 5.19
5866 6157 4.350368 TTTTCCTCCAAAATTTGAGGCC 57.650 40.909 16.33 0.00 34.95 5.19
5890 6181 4.298626 TCCATTGAGTCTAGGCTAATGGT 58.701 43.478 27.03 0.00 44.98 3.55
5891 6182 4.963318 TCCATTGAGTCTAGGCTAATGG 57.037 45.455 24.82 24.82 45.69 3.16
5917 6208 7.202029 CCATTTGGTGCATAGGATAGGATTTTT 60.202 37.037 0.00 0.00 0.00 1.94
6081 6372 3.932710 TCGAGAGTCCACAATTGCATTAC 59.067 43.478 5.05 0.00 0.00 1.89
6202 6493 6.259167 TCGCAGTAAAAGAAATTGTGTACTGT 59.741 34.615 12.56 0.00 40.23 3.55
6203 6494 6.573725 GTCGCAGTAAAAGAAATTGTGTACTG 59.426 38.462 8.81 8.81 40.77 2.74
6336 6627 9.381033 CATGTCATGGCTGGATTTTAAAATTTA 57.619 29.630 14.45 6.42 0.00 1.40
6412 6704 4.145052 GTGCCTTATATTTTGAGGAGGGG 58.855 47.826 0.00 0.00 32.11 4.79
6414 6706 3.251004 GCGTGCCTTATATTTTGAGGAGG 59.749 47.826 0.00 0.00 32.11 4.30
6415 6707 3.059597 CGCGTGCCTTATATTTTGAGGAG 60.060 47.826 0.00 0.00 32.11 3.69
6416 6708 2.869801 CGCGTGCCTTATATTTTGAGGA 59.130 45.455 0.00 0.00 32.11 3.71
6433 6728 2.277084 AGACAAGAAAAGTCAACGCGT 58.723 42.857 5.58 5.58 38.46 6.01
6459 6754 7.592533 CAGTGAAAATCATAGTCAAAGTTGTGG 59.407 37.037 0.00 0.00 0.00 4.17
6638 6935 3.117284 GTCCCTCCCCAAAATATAAGGCA 60.117 47.826 0.00 0.00 0.00 4.75
6689 6989 9.674068 TTGATTAGTAGCATACAACAACCAATA 57.326 29.630 0.00 0.00 46.26 1.90
6838 7138 3.384789 AGAGCTGGAACGCATGATAGTAA 59.615 43.478 0.00 0.00 0.00 2.24
6917 7217 6.820656 ACTAAAAGTGTCTTGCCAGATCTATG 59.179 38.462 0.00 0.00 0.00 2.23
6941 7241 1.267121 TTGGCAGGTACAGAGGAGAC 58.733 55.000 0.00 0.00 0.00 3.36
7003 7305 3.320626 GCAAGGAAAAGGCTGAAATCAC 58.679 45.455 0.00 0.00 0.00 3.06
7047 7349 5.179452 TCATCTCTTAGGGGTTTTTGAGG 57.821 43.478 0.00 0.00 0.00 3.86
7256 7558 3.198853 GGGTGCTCTTAGATTGAGAAGGT 59.801 47.826 0.00 0.00 33.68 3.50
7466 7769 7.169308 GTGTCTATATACATCCGGTTCACAAAG 59.831 40.741 0.00 0.00 0.00 2.77
7735 8038 2.416680 GCTCCCTTCAGCTTCATTCT 57.583 50.000 0.00 0.00 36.38 2.40
7760 8063 2.507407 TCCTTTGATTAGGCACACCC 57.493 50.000 0.00 0.00 36.11 4.61
7968 8271 3.129287 CCACTCTGACAGCTTGTTTTGTT 59.871 43.478 0.00 0.00 0.00 2.83
7980 8283 3.157881 CAACTCTACCTCCACTCTGACA 58.842 50.000 0.00 0.00 0.00 3.58
8317 8620 2.906389 TCCTCAACAGCCAACTCTACAT 59.094 45.455 0.00 0.00 0.00 2.29
8474 8779 3.875727 AGAATGCTCATCTTCAATGTCCG 59.124 43.478 0.00 0.00 0.00 4.79
8482 8787 6.344500 TCTTGGTTAGAGAATGCTCATCTTC 58.656 40.000 2.79 0.00 43.81 2.87
8515 8820 2.170985 CGGCTTGTGCTCGAAACG 59.829 61.111 0.00 0.00 39.59 3.60
8627 8932 6.903516 TCTACATCAATTCTGACCCATCAAT 58.096 36.000 0.00 0.00 33.30 2.57
8654 8961 5.934402 ACCGAGAATTCTACCAAGTGTAT 57.066 39.130 8.25 0.00 0.00 2.29
8678 8985 1.343142 AGTCACACGTGCCTATGTTCA 59.657 47.619 17.22 0.00 0.00 3.18
8814 9123 3.379057 TCCTCAAAACAAAAACTCGACCC 59.621 43.478 0.00 0.00 0.00 4.46
8817 9126 6.238648 GGAGATTCCTCAAAACAAAAACTCGA 60.239 38.462 0.00 0.00 41.20 4.04
8823 9132 8.163408 TCTATCAGGAGATTCCTCAAAACAAAA 58.837 33.333 0.00 0.00 45.66 2.44
8827 9136 6.259829 GCTTCTATCAGGAGATTCCTCAAAAC 59.740 42.308 0.00 0.00 45.66 2.43
8978 9305 5.936686 TGACTGAGAAGAATGAAAAGCTG 57.063 39.130 0.00 0.00 0.00 4.24
9038 9365 5.065474 GTGCGACCACAAATATAGCCTTTTA 59.935 40.000 0.00 0.00 41.67 1.52
9067 9394 5.525378 GTGGCACTAGATTCATTGGTAGAAG 59.475 44.000 11.13 0.00 0.00 2.85
9073 9400 3.181507 CGTTGTGGCACTAGATTCATTGG 60.182 47.826 19.83 0.00 0.00 3.16
9134 12442 2.612212 TCTCAGCGTGTTCAAACCTTTC 59.388 45.455 0.00 0.00 0.00 2.62
9178 12486 1.065600 CGGTTGTGCCAAGGTTGTG 59.934 57.895 0.00 0.00 36.97 3.33
9193 12501 0.818040 GTTGGAGAACCTTGTGCGGT 60.818 55.000 0.00 0.00 39.48 5.68
9194 12502 0.535102 AGTTGGAGAACCTTGTGCGG 60.535 55.000 0.00 0.00 37.04 5.69
9195 12503 0.588252 CAGTTGGAGAACCTTGTGCG 59.412 55.000 0.00 0.00 37.04 5.34
9196 12504 1.967319 TCAGTTGGAGAACCTTGTGC 58.033 50.000 0.00 0.00 37.04 4.57
9215 12523 5.530171 CAGCAGTAAATGAATCAGCCATACT 59.470 40.000 0.00 0.00 0.00 2.12
9353 12661 4.093703 TGTTGTTACTCAAGTTGAACGTGG 59.906 41.667 11.13 5.08 36.66 4.94
9357 12665 6.414987 GCATTCTGTTGTTACTCAAGTTGAAC 59.585 38.462 7.06 3.19 36.66 3.18
9393 12701 2.468532 GCGCACCGTCTACAAACG 59.531 61.111 0.30 0.00 42.24 3.60
9394 12702 1.897398 CTGGCGCACCGTCTACAAAC 61.897 60.000 10.83 0.00 39.70 2.93
9395 12703 1.666553 CTGGCGCACCGTCTACAAA 60.667 57.895 10.83 0.00 39.70 2.83
9396 12704 2.048597 CTGGCGCACCGTCTACAA 60.049 61.111 10.83 0.00 39.70 2.41
9397 12705 4.735132 GCTGGCGCACCGTCTACA 62.735 66.667 10.83 0.00 39.70 2.74
9431 12739 4.794439 TCCTGTGGATCGCGTGCG 62.794 66.667 5.77 8.14 41.35 5.34
9432 12740 2.202932 ATCCTGTGGATCGCGTGC 60.203 61.111 5.77 0.00 38.09 5.34
9439 12747 1.816537 CGTGACGGATCCTGTGGAT 59.183 57.895 10.75 0.00 46.28 3.41
9440 12748 3.001902 GCGTGACGGATCCTGTGGA 62.002 63.158 10.75 0.00 35.55 4.02
9441 12749 2.509336 GCGTGACGGATCCTGTGG 60.509 66.667 10.75 0.00 0.00 4.17
9442 12750 2.880879 CGCGTGACGGATCCTGTG 60.881 66.667 10.75 0.00 38.44 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.