Multiple sequence alignment - TraesCS5A01G103100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G103100 chr5A 100.000 3387 0 0 1 3387 158933445 158930059 0.000000e+00 6255
1 TraesCS5A01G103100 chr5A 89.960 249 22 3 482 728 491585557 491585310 5.450000e-83 318
2 TraesCS5A01G103100 chr5A 90.041 241 23 1 484 723 480479771 480479531 9.130000e-81 311
3 TraesCS5A01G103100 chr5B 94.485 1904 67 15 1503 3387 146268481 146266597 0.000000e+00 2900
4 TraesCS5A01G103100 chr5B 85.556 810 43 35 722 1495 146269330 146268559 0.000000e+00 780
5 TraesCS5A01G103100 chr5B 81.081 222 22 11 19 239 146270163 146269961 3.500000e-35 159
6 TraesCS5A01G103100 chr5B 79.424 243 15 11 250 487 146269542 146269330 4.560000e-29 139
7 TraesCS5A01G103100 chr5D 92.635 1901 90 21 1512 3387 134786410 134784535 0.000000e+00 2689
8 TraesCS5A01G103100 chr5D 86.767 801 35 27 722 1501 134787248 134786498 0.000000e+00 826
9 TraesCS5A01G103100 chr5D 84.348 345 17 6 148 487 134787557 134787245 1.530000e-78 303
10 TraesCS5A01G103100 chr3B 89.960 249 24 1 481 728 612798684 612798932 1.520000e-83 320
11 TraesCS5A01G103100 chr1A 90.123 243 21 3 484 724 477055574 477055333 2.540000e-81 313
12 TraesCS5A01G103100 chr7A 90.083 242 21 3 484 723 515976622 515976862 9.130000e-81 311
13 TraesCS5A01G103100 chr7A 88.492 252 28 1 479 729 657725464 657725213 1.530000e-78 303
14 TraesCS5A01G103100 chr2A 90.041 241 23 1 484 723 641918860 641919100 9.130000e-81 311
15 TraesCS5A01G103100 chr2A 89.388 245 25 1 484 727 84977769 84977525 1.180000e-79 307
16 TraesCS5A01G103100 chr6A 89.200 250 21 6 480 725 66301779 66301532 1.180000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G103100 chr5A 158930059 158933445 3386 True 6255.000000 6255 100.000000 1 3387 1 chr5A.!!$R1 3386
1 TraesCS5A01G103100 chr5B 146266597 146270163 3566 True 994.500000 2900 85.136500 19 3387 4 chr5B.!!$R1 3368
2 TraesCS5A01G103100 chr5D 134784535 134787557 3022 True 1272.666667 2689 87.916667 148 3387 3 chr5D.!!$R1 3239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 996 0.030101 CAACTGCGGCGGAAGAAAAA 59.970 50.0 17.15 0.0 0.00 1.94 F
989 1415 0.034089 TGCAGATCGAGAGTGAGGGA 60.034 55.0 0.00 0.0 0.00 4.20 F
1188 1621 0.193574 TCCTTCCCCAGTCCTTCACT 59.806 55.0 0.00 0.0 34.67 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 2194 0.033504 TCCGGTGTTGCACTCTCTTC 59.966 55.000 0.00 0.0 34.40 2.87 R
2251 2828 1.002868 GCAGAAGAGCTTGCCCTCA 60.003 57.895 0.00 0.0 34.26 3.86 R
2974 3561 2.100087 TGCATTGCTAATGATGCCACAG 59.900 45.455 10.49 0.0 46.16 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.876936 AGTTCAGAGTATCAGTTACGGAATA 57.123 36.000 0.00 0.00 37.82 1.75
33 34 9.362539 TCAGAGTATCAGTTACGGAATAAAAAC 57.637 33.333 0.00 0.00 37.82 2.43
34 35 9.146984 CAGAGTATCAGTTACGGAATAAAAACA 57.853 33.333 0.00 0.00 37.82 2.83
35 36 9.715121 AGAGTATCAGTTACGGAATAAAAACAA 57.285 29.630 0.00 0.00 37.82 2.83
46 47 5.294356 GGAATAAAAACAAACCAGGTGTCC 58.706 41.667 0.00 0.00 0.00 4.02
53 54 2.235155 ACAAACCAGGTGTCCAAAAACC 59.765 45.455 0.00 0.00 36.66 3.27
56 57 2.384828 ACCAGGTGTCCAAAAACCTTC 58.615 47.619 0.00 0.00 44.63 3.46
58 59 2.623416 CCAGGTGTCCAAAAACCTTCTC 59.377 50.000 0.00 0.00 44.63 2.87
59 60 2.623416 CAGGTGTCCAAAAACCTTCTCC 59.377 50.000 0.00 0.00 44.63 3.71
60 61 1.961394 GGTGTCCAAAAACCTTCTCCC 59.039 52.381 0.00 0.00 33.40 4.30
63 64 3.255888 GTGTCCAAAAACCTTCTCCCATC 59.744 47.826 0.00 0.00 0.00 3.51
69 70 6.101005 TCCAAAAACCTTCTCCCATCATTTTT 59.899 34.615 0.00 0.00 0.00 1.94
87 89 7.560368 TCATTTTTGGACACCACTTTTACATT 58.440 30.769 0.00 0.00 30.78 2.71
88 90 7.493971 TCATTTTTGGACACCACTTTTACATTG 59.506 33.333 0.00 0.00 30.78 2.82
96 98 7.214467 ACACCACTTTTACATTGTCTATTGG 57.786 36.000 0.00 0.00 0.00 3.16
98 100 7.504238 ACACCACTTTTACATTGTCTATTGGAA 59.496 33.333 9.94 0.00 0.00 3.53
99 101 7.807907 CACCACTTTTACATTGTCTATTGGAAC 59.192 37.037 9.94 0.00 0.00 3.62
100 102 7.039993 ACCACTTTTACATTGTCTATTGGAACC 60.040 37.037 9.94 0.00 0.00 3.62
101 103 7.040062 CCACTTTTACATTGTCTATTGGAACCA 60.040 37.037 0.00 0.00 0.00 3.67
102 104 8.356657 CACTTTTACATTGTCTATTGGAACCAA 58.643 33.333 8.75 8.75 40.47 3.67
103 105 8.576442 ACTTTTACATTGTCTATTGGAACCAAG 58.424 33.333 11.88 0.00 39.47 3.61
104 106 7.461182 TTTACATTGTCTATTGGAACCAAGG 57.539 36.000 11.88 7.50 39.47 3.61
105 107 3.763897 ACATTGTCTATTGGAACCAAGGC 59.236 43.478 11.88 1.76 39.47 4.35
106 108 3.806949 TTGTCTATTGGAACCAAGGCT 57.193 42.857 11.88 0.00 39.47 4.58
107 109 3.071874 TGTCTATTGGAACCAAGGCTG 57.928 47.619 11.88 2.94 39.47 4.85
110 112 0.704076 TATTGGAACCAAGGCTGCCT 59.296 50.000 17.22 17.22 39.47 4.75
111 113 0.901580 ATTGGAACCAAGGCTGCCTG 60.902 55.000 24.16 13.46 39.47 4.85
112 114 3.376918 GGAACCAAGGCTGCCTGC 61.377 66.667 24.16 9.38 41.94 4.85
113 115 2.598394 GAACCAAGGCTGCCTGCA 60.598 61.111 24.16 0.00 45.15 4.41
114 116 2.599578 AACCAAGGCTGCCTGCAG 60.600 61.111 24.16 16.04 45.15 4.41
115 117 3.137385 AACCAAGGCTGCCTGCAGA 62.137 57.895 24.16 0.00 46.30 4.26
135 137 1.837051 AGACAGCAGACCCACCGAA 60.837 57.895 0.00 0.00 0.00 4.30
139 141 0.742281 CAGCAGACCCACCGAATGAG 60.742 60.000 0.00 0.00 0.00 2.90
140 142 2.109126 GCAGACCCACCGAATGAGC 61.109 63.158 0.00 0.00 0.00 4.26
141 143 1.599047 CAGACCCACCGAATGAGCT 59.401 57.895 0.00 0.00 0.00 4.09
142 144 0.036010 CAGACCCACCGAATGAGCTT 60.036 55.000 0.00 0.00 0.00 3.74
143 145 0.693049 AGACCCACCGAATGAGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
144 146 1.906574 AGACCCACCGAATGAGCTTTA 59.093 47.619 0.00 0.00 0.00 1.85
145 147 2.007608 GACCCACCGAATGAGCTTTAC 58.992 52.381 0.00 0.00 0.00 2.01
146 148 1.628846 ACCCACCGAATGAGCTTTACT 59.371 47.619 0.00 0.00 0.00 2.24
213 215 4.779993 ATCAGGGACCCTCAAAGATTAC 57.220 45.455 11.23 0.00 0.00 1.89
214 216 2.844348 TCAGGGACCCTCAAAGATTACC 59.156 50.000 11.23 0.00 0.00 2.85
217 219 2.629051 GGACCCTCAAAGATTACCACG 58.371 52.381 0.00 0.00 0.00 4.94
239 241 3.002348 GCTTAACGAGAGAGAGAGAGAGC 59.998 52.174 0.00 0.00 0.00 4.09
246 248 0.740149 AGAGAGAGAGAGCGCATGTG 59.260 55.000 11.47 0.66 0.00 3.21
258 670 6.201806 AGAGAGCGCATGTGAAGAATATAAAC 59.798 38.462 11.47 0.00 0.00 2.01
294 706 0.709992 CCCCCTCAAATCCCCAAGAA 59.290 55.000 0.00 0.00 0.00 2.52
314 726 3.536956 ATGGAAATCAGCTGCCATTTG 57.463 42.857 15.86 0.00 37.88 2.32
315 727 1.066716 TGGAAATCAGCTGCCATTTGC 60.067 47.619 19.30 19.30 41.77 3.68
316 728 6.379892 AATGGAAATCAGCTGCCATTTGCA 62.380 41.667 26.30 26.30 46.05 4.08
330 742 1.600023 TTTGCAGTACCTTTCACCCG 58.400 50.000 0.00 0.00 0.00 5.28
331 743 0.250553 TTGCAGTACCTTTCACCCGG 60.251 55.000 0.00 0.00 0.00 5.73
337 749 0.693622 TACCTTTCACCCGGAATGCA 59.306 50.000 0.73 0.00 34.91 3.96
339 751 0.740737 CCTTTCACCCGGAATGCATC 59.259 55.000 0.73 0.00 34.91 3.91
357 769 2.262915 CTCTCCCTGCCACGTCAC 59.737 66.667 0.00 0.00 0.00 3.67
371 783 1.227853 GTCACCACCAGTCACCACC 60.228 63.158 0.00 0.00 0.00 4.61
372 784 2.280797 CACCACCAGTCACCACCG 60.281 66.667 0.00 0.00 0.00 4.94
373 785 2.766651 ACCACCAGTCACCACCGT 60.767 61.111 0.00 0.00 0.00 4.83
374 786 2.030562 CCACCAGTCACCACCGTC 59.969 66.667 0.00 0.00 0.00 4.79
375 787 2.802724 CCACCAGTCACCACCGTCA 61.803 63.158 0.00 0.00 0.00 4.35
376 788 1.371183 CACCAGTCACCACCGTCAT 59.629 57.895 0.00 0.00 0.00 3.06
377 789 0.950555 CACCAGTCACCACCGTCATG 60.951 60.000 0.00 0.00 0.00 3.07
378 790 1.375908 CCAGTCACCACCGTCATGG 60.376 63.158 0.00 0.00 46.10 3.66
392 804 5.570262 CCGTCATGGTACGTATACATTTG 57.430 43.478 11.58 5.59 41.27 2.32
393 805 5.045215 CCGTCATGGTACGTATACATTTGT 58.955 41.667 11.58 0.00 41.27 2.83
394 806 5.521010 CCGTCATGGTACGTATACATTTGTT 59.479 40.000 11.58 0.00 41.27 2.83
395 807 6.407623 CGTCATGGTACGTATACATTTGTTG 58.592 40.000 11.58 4.47 38.07 3.33
396 808 6.189567 GTCATGGTACGTATACATTTGTTGC 58.810 40.000 11.58 0.00 32.40 4.17
427 839 3.063743 GCCCCTCCGCAAATTTCCG 62.064 63.158 0.00 0.00 0.00 4.30
436 848 1.281566 GCAAATTTCCGCAACCACCG 61.282 55.000 0.00 0.00 0.00 4.94
447 859 0.031994 CAACCACCGCCTCCTTTTTG 59.968 55.000 0.00 0.00 0.00 2.44
456 868 2.888414 CGCCTCCTTTTTGGTTTCCTTA 59.112 45.455 0.00 0.00 37.07 2.69
460 872 4.262463 CCTCCTTTTTGGTTTCCTTAAGCC 60.262 45.833 0.00 0.00 36.55 4.35
464 876 1.243902 TTGGTTTCCTTAAGCCGCTG 58.756 50.000 0.00 0.00 38.75 5.18
487 904 4.870991 GCAATTCCCACTTGACTACTACTC 59.129 45.833 0.00 0.00 0.00 2.59
488 905 5.420409 CAATTCCCACTTGACTACTACTCC 58.580 45.833 0.00 0.00 0.00 3.85
489 906 3.097342 TCCCACTTGACTACTACTCCC 57.903 52.381 0.00 0.00 0.00 4.30
490 907 2.653366 TCCCACTTGACTACTACTCCCT 59.347 50.000 0.00 0.00 0.00 4.20
491 908 3.077088 TCCCACTTGACTACTACTCCCTT 59.923 47.826 0.00 0.00 0.00 3.95
492 909 3.447944 CCCACTTGACTACTACTCCCTTC 59.552 52.174 0.00 0.00 0.00 3.46
493 910 4.087182 CCACTTGACTACTACTCCCTTCA 58.913 47.826 0.00 0.00 0.00 3.02
494 911 4.712337 CCACTTGACTACTACTCCCTTCAT 59.288 45.833 0.00 0.00 0.00 2.57
495 912 5.187967 CCACTTGACTACTACTCCCTTCATT 59.812 44.000 0.00 0.00 0.00 2.57
496 913 6.295916 CCACTTGACTACTACTCCCTTCATTT 60.296 42.308 0.00 0.00 0.00 2.32
497 914 6.814146 CACTTGACTACTACTCCCTTCATTTC 59.186 42.308 0.00 0.00 0.00 2.17
498 915 6.497259 ACTTGACTACTACTCCCTTCATTTCA 59.503 38.462 0.00 0.00 0.00 2.69
499 916 6.928348 TGACTACTACTCCCTTCATTTCAA 57.072 37.500 0.00 0.00 0.00 2.69
500 917 7.311092 TGACTACTACTCCCTTCATTTCAAA 57.689 36.000 0.00 0.00 0.00 2.69
501 918 7.741785 TGACTACTACTCCCTTCATTTCAAAA 58.258 34.615 0.00 0.00 0.00 2.44
502 919 8.383175 TGACTACTACTCCCTTCATTTCAAAAT 58.617 33.333 0.00 0.00 0.00 1.82
503 920 9.886132 GACTACTACTCCCTTCATTTCAAAATA 57.114 33.333 0.00 0.00 0.00 1.40
509 926 8.000780 ACTCCCTTCATTTCAAAATATAGTGC 57.999 34.615 0.00 0.00 0.00 4.40
510 927 7.026631 TCCCTTCATTTCAAAATATAGTGCG 57.973 36.000 0.00 0.00 0.00 5.34
511 928 5.687285 CCCTTCATTTCAAAATATAGTGCGC 59.313 40.000 0.00 0.00 0.00 6.09
512 929 5.687285 CCTTCATTTCAAAATATAGTGCGCC 59.313 40.000 4.18 0.00 0.00 6.53
513 930 6.449635 TTCATTTCAAAATATAGTGCGCCT 57.550 33.333 4.18 3.99 0.00 5.52
514 931 5.820131 TCATTTCAAAATATAGTGCGCCTG 58.180 37.500 4.18 0.00 0.00 4.85
515 932 5.356751 TCATTTCAAAATATAGTGCGCCTGT 59.643 36.000 4.18 2.37 0.00 4.00
516 933 6.540551 TCATTTCAAAATATAGTGCGCCTGTA 59.459 34.615 4.18 4.83 0.00 2.74
517 934 6.935741 TTTCAAAATATAGTGCGCCTGTAT 57.064 33.333 4.18 7.12 0.00 2.29
518 935 6.935741 TTCAAAATATAGTGCGCCTGTATT 57.064 33.333 16.49 16.49 38.64 1.89
519 936 6.935741 TCAAAATATAGTGCGCCTGTATTT 57.064 33.333 22.64 22.64 44.58 1.40
521 938 7.767261 TCAAAATATAGTGCGCCTGTATTTTT 58.233 30.769 29.04 20.13 46.63 1.94
522 939 7.913297 TCAAAATATAGTGCGCCTGTATTTTTC 59.087 33.333 29.04 5.47 46.63 2.29
523 940 3.944422 ATAGTGCGCCTGTATTTTTCG 57.056 42.857 4.18 0.00 0.00 3.46
524 941 1.803334 AGTGCGCCTGTATTTTTCGA 58.197 45.000 4.18 0.00 0.00 3.71
525 942 1.732259 AGTGCGCCTGTATTTTTCGAG 59.268 47.619 4.18 0.00 0.00 4.04
526 943 1.083489 TGCGCCTGTATTTTTCGAGG 58.917 50.000 4.18 0.00 0.00 4.63
527 944 1.084289 GCGCCTGTATTTTTCGAGGT 58.916 50.000 0.00 0.00 0.00 3.85
528 945 1.062148 GCGCCTGTATTTTTCGAGGTC 59.938 52.381 0.00 0.00 0.00 3.85
529 946 2.618053 CGCCTGTATTTTTCGAGGTCT 58.382 47.619 0.00 0.00 0.00 3.85
530 947 2.603560 CGCCTGTATTTTTCGAGGTCTC 59.396 50.000 0.00 0.00 0.00 3.36
531 948 3.596214 GCCTGTATTTTTCGAGGTCTCA 58.404 45.455 0.00 0.00 0.00 3.27
532 949 3.371285 GCCTGTATTTTTCGAGGTCTCAC 59.629 47.826 0.00 0.00 0.00 3.51
533 950 4.822026 CCTGTATTTTTCGAGGTCTCACT 58.178 43.478 0.00 0.00 0.00 3.41
534 951 5.238583 CCTGTATTTTTCGAGGTCTCACTT 58.761 41.667 0.00 0.00 0.00 3.16
535 952 5.701290 CCTGTATTTTTCGAGGTCTCACTTT 59.299 40.000 0.00 0.00 0.00 2.66
536 953 6.347725 CCTGTATTTTTCGAGGTCTCACTTTG 60.348 42.308 0.00 0.00 0.00 2.77
537 954 6.285224 TGTATTTTTCGAGGTCTCACTTTGA 58.715 36.000 0.00 0.00 0.00 2.69
538 955 5.674933 ATTTTTCGAGGTCTCACTTTGAC 57.325 39.130 0.00 0.00 0.00 3.18
551 968 8.965986 GTCTCACTTTGACCATAAATTTAACC 57.034 34.615 1.21 0.00 0.00 2.85
552 969 8.573035 GTCTCACTTTGACCATAAATTTAACCA 58.427 33.333 1.21 0.00 0.00 3.67
553 970 9.137459 TCTCACTTTGACCATAAATTTAACCAA 57.863 29.630 1.21 2.19 0.00 3.67
554 971 9.191995 CTCACTTTGACCATAAATTTAACCAAC 57.808 33.333 1.21 0.00 0.00 3.77
555 972 8.696374 TCACTTTGACCATAAATTTAACCAACA 58.304 29.630 1.21 0.00 0.00 3.33
556 973 9.319143 CACTTTGACCATAAATTTAACCAACAA 57.681 29.630 1.21 3.68 0.00 2.83
557 974 9.892130 ACTTTGACCATAAATTTAACCAACAAA 57.108 25.926 1.21 10.10 0.00 2.83
560 977 8.664211 TGACCATAAATTTAACCAACAAAACC 57.336 30.769 1.21 0.00 0.00 3.27
561 978 8.265055 TGACCATAAATTTAACCAACAAAACCA 58.735 29.630 1.21 0.00 0.00 3.67
562 979 9.110502 GACCATAAATTTAACCAACAAAACCAA 57.889 29.630 1.21 0.00 0.00 3.67
563 980 8.894731 ACCATAAATTTAACCAACAAAACCAAC 58.105 29.630 1.21 0.00 0.00 3.77
564 981 9.114952 CCATAAATTTAACCAACAAAACCAACT 57.885 29.630 1.21 0.00 0.00 3.16
565 982 9.928236 CATAAATTTAACCAACAAAACCAACTG 57.072 29.630 1.21 0.00 0.00 3.16
566 983 6.429791 AATTTAACCAACAAAACCAACTGC 57.570 33.333 0.00 0.00 0.00 4.40
567 984 2.003196 AACCAACAAAACCAACTGCG 57.997 45.000 0.00 0.00 0.00 5.18
568 985 0.174617 ACCAACAAAACCAACTGCGG 59.825 50.000 0.00 0.00 0.00 5.69
569 986 1.151172 CCAACAAAACCAACTGCGGC 61.151 55.000 0.00 0.00 0.00 6.53
570 987 1.226831 AACAAAACCAACTGCGGCG 60.227 52.632 0.51 0.51 0.00 6.46
571 988 2.354539 CAAAACCAACTGCGGCGG 60.355 61.111 9.78 7.39 0.00 6.13
572 989 2.517402 AAAACCAACTGCGGCGGA 60.517 55.556 17.15 4.40 0.00 5.54
573 990 2.122167 AAAACCAACTGCGGCGGAA 61.122 52.632 17.15 0.00 0.00 4.30
574 991 2.070654 AAAACCAACTGCGGCGGAAG 62.071 55.000 17.15 7.03 0.00 3.46
575 992 2.951475 AAACCAACTGCGGCGGAAGA 62.951 55.000 17.15 0.00 0.00 2.87
576 993 2.668212 CCAACTGCGGCGGAAGAA 60.668 61.111 17.15 0.00 0.00 2.52
577 994 2.258013 CCAACTGCGGCGGAAGAAA 61.258 57.895 17.15 0.00 0.00 2.52
578 995 1.652012 CAACTGCGGCGGAAGAAAA 59.348 52.632 17.15 0.00 0.00 2.29
579 996 0.030101 CAACTGCGGCGGAAGAAAAA 59.970 50.000 17.15 0.00 0.00 1.94
636 1053 9.173939 GAATTCACTGATATATTTTTGCTTCCG 57.826 33.333 0.00 0.00 0.00 4.30
637 1054 6.060028 TCACTGATATATTTTTGCTTCCGC 57.940 37.500 0.00 0.00 0.00 5.54
638 1055 5.008613 TCACTGATATATTTTTGCTTCCGCC 59.991 40.000 0.00 0.00 34.43 6.13
639 1056 4.024048 ACTGATATATTTTTGCTTCCGCCG 60.024 41.667 0.00 0.00 34.43 6.46
640 1057 2.766970 TATATTTTTGCTTCCGCCGC 57.233 45.000 0.00 0.00 34.43 6.53
641 1058 0.814457 ATATTTTTGCTTCCGCCGCA 59.186 45.000 0.00 0.00 35.22 5.69
642 1059 0.598562 TATTTTTGCTTCCGCCGCAA 59.401 45.000 0.00 0.00 44.83 4.85
643 1060 0.037419 ATTTTTGCTTCCGCCGCAAT 60.037 45.000 5.33 0.00 45.67 3.56
644 1061 0.665972 TTTTTGCTTCCGCCGCAATC 60.666 50.000 5.33 0.00 45.67 2.67
645 1062 2.794627 TTTTGCTTCCGCCGCAATCG 62.795 55.000 5.33 0.00 45.67 3.34
656 1073 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
657 1074 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
658 1075 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
659 1076 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
660 1077 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
661 1078 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
662 1079 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
663 1080 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
664 1081 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
665 1082 8.403236 GCAATCGGTCTTGGTAGTTAAATTTAT 58.597 33.333 0.00 0.00 0.00 1.40
666 1083 9.716507 CAATCGGTCTTGGTAGTTAAATTTATG 57.283 33.333 0.00 0.00 0.00 1.90
667 1084 9.675464 AATCGGTCTTGGTAGTTAAATTTATGA 57.325 29.630 0.00 0.00 0.00 2.15
668 1085 9.847224 ATCGGTCTTGGTAGTTAAATTTATGAT 57.153 29.630 0.00 0.00 0.00 2.45
669 1086 9.321562 TCGGTCTTGGTAGTTAAATTTATGATC 57.678 33.333 0.00 0.00 0.00 2.92
670 1087 9.104965 CGGTCTTGGTAGTTAAATTTATGATCA 57.895 33.333 0.00 0.00 0.00 2.92
697 1114 9.631452 AAGTTAAAGCATGAGAATAAAGAAAGC 57.369 29.630 0.00 0.00 0.00 3.51
698 1115 8.796475 AGTTAAAGCATGAGAATAAAGAAAGCA 58.204 29.630 0.00 0.00 0.00 3.91
699 1116 8.854312 GTTAAAGCATGAGAATAAAGAAAGCAC 58.146 33.333 0.00 0.00 0.00 4.40
700 1117 6.830873 AAGCATGAGAATAAAGAAAGCACT 57.169 33.333 0.00 0.00 0.00 4.40
701 1118 6.192234 AGCATGAGAATAAAGAAAGCACTG 57.808 37.500 0.00 0.00 0.00 3.66
702 1119 4.797349 GCATGAGAATAAAGAAAGCACTGC 59.203 41.667 0.00 0.00 0.00 4.40
703 1120 5.620654 GCATGAGAATAAAGAAAGCACTGCA 60.621 40.000 3.30 0.00 0.00 4.41
704 1121 6.561614 CATGAGAATAAAGAAAGCACTGCAT 58.438 36.000 3.30 0.00 0.00 3.96
705 1122 6.579666 TGAGAATAAAGAAAGCACTGCATT 57.420 33.333 3.30 0.00 0.00 3.56
706 1123 6.384224 TGAGAATAAAGAAAGCACTGCATTG 58.616 36.000 3.30 0.00 0.00 2.82
707 1124 6.016024 TGAGAATAAAGAAAGCACTGCATTGT 60.016 34.615 5.89 0.00 0.00 2.71
708 1125 7.174772 TGAGAATAAAGAAAGCACTGCATTGTA 59.825 33.333 5.89 0.00 0.00 2.41
709 1126 7.533426 AGAATAAAGAAAGCACTGCATTGTAG 58.467 34.615 5.89 0.00 0.00 2.74
710 1127 7.391554 AGAATAAAGAAAGCACTGCATTGTAGA 59.608 33.333 8.86 0.00 0.00 2.59
711 1128 5.772825 AAAGAAAGCACTGCATTGTAGAA 57.227 34.783 8.86 0.00 0.00 2.10
712 1129 5.972107 AAGAAAGCACTGCATTGTAGAAT 57.028 34.783 8.86 0.00 0.00 2.40
713 1130 5.306532 AGAAAGCACTGCATTGTAGAATG 57.693 39.130 8.86 8.21 41.82 2.67
714 1131 4.157289 AGAAAGCACTGCATTGTAGAATGG 59.843 41.667 13.92 1.61 39.62 3.16
715 1132 3.354948 AGCACTGCATTGTAGAATGGA 57.645 42.857 13.92 10.36 39.62 3.41
720 1137 3.565764 TGCATTGTAGAATGGAGGGAG 57.434 47.619 13.92 0.00 39.62 4.30
721 1138 2.846206 TGCATTGTAGAATGGAGGGAGT 59.154 45.455 13.92 0.00 39.62 3.85
740 1157 3.011119 AGTACTACTCGTTCTGGCTCTG 58.989 50.000 0.00 0.00 0.00 3.35
741 1158 0.528470 ACTACTCGTTCTGGCTCTGC 59.472 55.000 0.00 0.00 0.00 4.26
767 1184 2.666317 CACCCCCAACATTATTCCCTC 58.334 52.381 0.00 0.00 0.00 4.30
772 1189 3.495100 CCCCAACATTATTCCCTCTCTCG 60.495 52.174 0.00 0.00 0.00 4.04
818 1235 4.409218 CGCGGCAGCAACAGCAAT 62.409 61.111 10.08 0.00 45.49 3.56
819 1236 2.876955 GCGGCAGCAACAGCAATA 59.123 55.556 3.18 0.00 44.35 1.90
820 1237 1.226491 GCGGCAGCAACAGCAATAG 60.226 57.895 3.18 0.00 44.35 1.73
888 1306 7.362920 GCCATTTACCACCATATAATCATCACC 60.363 40.741 0.00 0.00 0.00 4.02
946 1364 0.179234 TGTGTTGGAAGAACGCCTCA 59.821 50.000 0.00 0.00 0.00 3.86
952 1378 0.744771 GGAAGAACGCCTCACCATCC 60.745 60.000 0.00 0.00 0.00 3.51
964 1390 0.180642 CACCATCCATCAGAGCAGCT 59.819 55.000 0.00 0.00 0.00 4.24
965 1391 0.469070 ACCATCCATCAGAGCAGCTC 59.531 55.000 15.25 15.25 0.00 4.09
966 1392 0.600518 CCATCCATCAGAGCAGCTCG 60.601 60.000 16.99 11.77 35.36 5.03
984 1410 1.144565 CGGCTTGCAGATCGAGAGTG 61.145 60.000 0.00 0.00 0.00 3.51
985 1411 0.174389 GGCTTGCAGATCGAGAGTGA 59.826 55.000 0.00 0.00 0.00 3.41
988 1414 0.820226 TTGCAGATCGAGAGTGAGGG 59.180 55.000 0.00 0.00 0.00 4.30
989 1415 0.034089 TGCAGATCGAGAGTGAGGGA 60.034 55.000 0.00 0.00 0.00 4.20
990 1416 0.667993 GCAGATCGAGAGTGAGGGAG 59.332 60.000 0.00 0.00 0.00 4.30
991 1417 2.021723 GCAGATCGAGAGTGAGGGAGT 61.022 57.143 0.00 0.00 0.00 3.85
1152 1585 1.219393 CCTCAAGGTCTTCCGCCTC 59.781 63.158 0.00 0.00 39.05 4.70
1176 1609 1.229853 TTCCCCACTCCTCCTTCCC 60.230 63.158 0.00 0.00 0.00 3.97
1184 1617 0.252927 CTCCTCCTTCCCCAGTCCTT 60.253 60.000 0.00 0.00 0.00 3.36
1186 1619 0.547712 CCTCCTTCCCCAGTCCTTCA 60.548 60.000 0.00 0.00 0.00 3.02
1187 1620 0.615850 CTCCTTCCCCAGTCCTTCAC 59.384 60.000 0.00 0.00 0.00 3.18
1188 1621 0.193574 TCCTTCCCCAGTCCTTCACT 59.806 55.000 0.00 0.00 34.67 3.41
1189 1622 1.068121 CCTTCCCCAGTCCTTCACTT 58.932 55.000 0.00 0.00 30.26 3.16
1190 1623 1.271597 CCTTCCCCAGTCCTTCACTTG 60.272 57.143 0.00 0.00 30.26 3.16
1193 1661 1.420138 TCCCCAGTCCTTCACTTGTTC 59.580 52.381 0.00 0.00 30.26 3.18
1214 1682 8.506168 TGTTCTTCAACTTGTTCTATGTTTCT 57.494 30.769 0.00 0.00 33.17 2.52
1215 1683 8.397906 TGTTCTTCAACTTGTTCTATGTTTCTG 58.602 33.333 0.00 0.00 33.17 3.02
1218 1686 7.768582 TCTTCAACTTGTTCTATGTTTCTGTGA 59.231 33.333 0.00 0.00 0.00 3.58
1220 1688 6.821160 TCAACTTGTTCTATGTTTCTGTGACA 59.179 34.615 0.00 0.00 0.00 3.58
1326 1794 0.992802 CAAGAGCTTCGAAGGTACGC 59.007 55.000 28.37 16.77 36.78 4.42
1342 1810 0.541863 ACGCCCTTAGCTTAGCACAT 59.458 50.000 7.07 0.00 40.39 3.21
1343 1811 0.940126 CGCCCTTAGCTTAGCACATG 59.060 55.000 7.07 0.00 40.39 3.21
1344 1812 1.743772 CGCCCTTAGCTTAGCACATGT 60.744 52.381 7.07 0.00 40.39 3.21
1345 1813 2.369394 GCCCTTAGCTTAGCACATGTT 58.631 47.619 7.07 0.00 38.99 2.71
1346 1814 2.098117 GCCCTTAGCTTAGCACATGTTG 59.902 50.000 7.07 0.00 38.99 3.33
1347 1815 3.347216 CCCTTAGCTTAGCACATGTTGT 58.653 45.455 7.07 0.00 0.00 3.32
1348 1816 3.375299 CCCTTAGCTTAGCACATGTTGTC 59.625 47.826 7.07 0.00 0.00 3.18
1349 1817 3.062639 CCTTAGCTTAGCACATGTTGTCG 59.937 47.826 7.07 0.00 0.00 4.35
1350 1818 2.169832 AGCTTAGCACATGTTGTCGT 57.830 45.000 7.07 0.00 0.00 4.34
1351 1819 2.069273 AGCTTAGCACATGTTGTCGTC 58.931 47.619 7.07 0.00 0.00 4.20
1352 1820 2.069273 GCTTAGCACATGTTGTCGTCT 58.931 47.619 0.00 0.00 0.00 4.18
1425 1893 0.593128 CTCCAAAGGTTGTCAAGCCG 59.407 55.000 11.10 0.88 0.00 5.52
1452 1920 4.141158 AGGAATGTTGGGAATGAGGTATCC 60.141 45.833 0.00 0.00 34.85 2.59
1453 1921 4.386312 GGAATGTTGGGAATGAGGTATCCA 60.386 45.833 0.00 0.00 37.46 3.41
1454 1922 5.388654 GAATGTTGGGAATGAGGTATCCAT 58.611 41.667 0.00 0.00 37.46 3.41
1455 1923 4.437682 TGTTGGGAATGAGGTATCCATC 57.562 45.455 0.00 0.00 37.46 3.51
1512 1980 5.910166 GCAGAGTGTAGTACGTAGATCATTG 59.090 44.000 0.00 0.00 0.00 2.82
1519 2067 8.997323 GTGTAGTACGTAGATCATTGGTAGTAT 58.003 37.037 0.00 0.00 0.00 2.12
1521 2069 9.823098 GTAGTACGTAGATCATTGGTAGTATTG 57.177 37.037 0.00 0.00 0.00 1.90
1544 2104 7.784633 TGTTTTTCCAAAGATGATCCAAAAC 57.215 32.000 0.00 0.00 34.76 2.43
1560 2120 3.446799 CAAAACACACACACCCAAGATG 58.553 45.455 0.00 0.00 0.00 2.90
1561 2121 1.691196 AACACACACACCCAAGATGG 58.309 50.000 0.00 0.00 37.25 3.51
1570 2130 1.269448 CACCCAAGATGGTCCAAAACG 59.731 52.381 0.00 0.00 36.12 3.60
1583 2144 7.513371 TGGTCCAAAACGTACATAGATTTTT 57.487 32.000 0.00 0.00 0.00 1.94
1624 2194 3.876320 GCAAGAGAGCTCCATTAAGAAGG 59.124 47.826 10.93 0.00 0.00 3.46
1628 2198 5.276440 AGAGAGCTCCATTAAGAAGGAAGA 58.724 41.667 10.93 0.00 32.57 2.87
1638 2208 3.845781 AAGAAGGAAGAGAGTGCAACA 57.154 42.857 0.00 0.00 41.43 3.33
1649 2219 2.100631 GTGCAACACCGGATCCGAG 61.101 63.158 35.42 26.96 38.19 4.63
1722 2292 5.133264 GCAGAATATCGACAAAATAGTGCG 58.867 41.667 0.00 0.00 0.00 5.34
2080 2657 2.560981 TCTATGACAAGACAAGGCGACA 59.439 45.455 0.00 0.00 0.00 4.35
2109 2686 9.130312 GACGTATTGTTCATATCATACCTCTTC 57.870 37.037 0.00 0.00 0.00 2.87
2123 2700 3.009723 ACCTCTTCGGTTTGCATACATG 58.990 45.455 9.57 0.00 46.37 3.21
2251 2828 1.526887 CCTTCGAATTACATCGCGCAT 59.473 47.619 8.75 0.00 42.44 4.73
2427 3004 4.446371 CAGAGATGAATAACGAGCCCTTT 58.554 43.478 0.00 0.00 0.00 3.11
2450 3027 2.479049 GCATTTGCACCAGAGCAGTATG 60.479 50.000 0.00 0.00 46.54 2.39
2714 3295 8.926715 AACAACTTTAATCTTTCCACAGAAAC 57.073 30.769 0.00 0.00 37.07 2.78
2762 3343 1.742768 GTACAGATCTGGAGGCCCG 59.257 63.158 26.08 0.00 34.29 6.13
2767 3348 1.123928 AGATCTGGAGGCCCGTTAAG 58.876 55.000 0.00 0.00 34.29 1.85
2941 3528 7.826690 TGCATAATTAACTGAAAAGGAAGTCC 58.173 34.615 0.00 0.00 0.00 3.85
3178 3765 5.583932 ACATAAATCAGAGAGGGCCTTTTT 58.416 37.500 7.89 0.00 0.00 1.94
3223 3810 2.224719 CCCCTAGAATCTCATTGCCAGG 60.225 54.545 0.00 0.00 0.00 4.45
3224 3811 2.224719 CCCTAGAATCTCATTGCCAGGG 60.225 54.545 0.00 0.00 35.83 4.45
3225 3812 2.707791 CCTAGAATCTCATTGCCAGGGA 59.292 50.000 0.00 0.00 0.00 4.20
3226 3813 3.137176 CCTAGAATCTCATTGCCAGGGAA 59.863 47.826 0.00 0.00 0.00 3.97
3282 3869 1.080705 GAGACGACCAACCTGTCCG 60.081 63.158 0.00 0.00 33.09 4.79
3296 3883 2.143925 CTGTCCGTGGGAAGAAAACTC 58.856 52.381 0.00 0.00 31.38 3.01
3297 3884 1.766496 TGTCCGTGGGAAGAAAACTCT 59.234 47.619 0.00 0.00 31.38 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.208007 TCCGTAACTGATACTCTGAACTTTCA 59.792 38.462 0.00 0.00 32.44 2.69
1 2 6.618811 TCCGTAACTGATACTCTGAACTTTC 58.381 40.000 0.00 0.00 31.96 2.62
2 3 6.585695 TCCGTAACTGATACTCTGAACTTT 57.414 37.500 0.00 0.00 31.96 2.66
3 4 6.585695 TTCCGTAACTGATACTCTGAACTT 57.414 37.500 0.00 0.00 31.96 2.66
4 5 6.777213 ATTCCGTAACTGATACTCTGAACT 57.223 37.500 0.00 0.00 31.96 3.01
5 6 8.922058 TTTATTCCGTAACTGATACTCTGAAC 57.078 34.615 0.00 0.00 31.96 3.18
6 7 9.932207 TTTTTATTCCGTAACTGATACTCTGAA 57.068 29.630 0.00 0.00 31.96 3.02
7 8 9.362539 GTTTTTATTCCGTAACTGATACTCTGA 57.637 33.333 0.00 0.00 31.96 3.27
8 9 9.146984 TGTTTTTATTCCGTAACTGATACTCTG 57.853 33.333 0.00 0.00 31.96 3.35
9 10 9.715121 TTGTTTTTATTCCGTAACTGATACTCT 57.285 29.630 0.00 0.00 31.96 3.24
12 13 9.333497 GGTTTGTTTTTATTCCGTAACTGATAC 57.667 33.333 0.00 0.00 0.00 2.24
13 14 9.064706 TGGTTTGTTTTTATTCCGTAACTGATA 57.935 29.630 0.00 0.00 0.00 2.15
14 15 7.942990 TGGTTTGTTTTTATTCCGTAACTGAT 58.057 30.769 0.00 0.00 0.00 2.90
15 16 7.330900 TGGTTTGTTTTTATTCCGTAACTGA 57.669 32.000 0.00 0.00 0.00 3.41
16 17 6.639279 CCTGGTTTGTTTTTATTCCGTAACTG 59.361 38.462 0.00 0.00 0.00 3.16
17 18 6.321945 ACCTGGTTTGTTTTTATTCCGTAACT 59.678 34.615 0.00 0.00 0.00 2.24
28 29 4.625607 TTTGGACACCTGGTTTGTTTTT 57.374 36.364 0.00 0.00 0.00 1.94
33 34 2.499693 AGGTTTTTGGACACCTGGTTTG 59.500 45.455 0.00 0.00 42.20 2.93
34 35 2.827755 AGGTTTTTGGACACCTGGTTT 58.172 42.857 0.00 0.00 42.20 3.27
35 36 2.543037 AGGTTTTTGGACACCTGGTT 57.457 45.000 0.00 0.00 42.20 3.67
36 37 2.024369 AGAAGGTTTTTGGACACCTGGT 60.024 45.455 0.00 0.00 43.05 4.00
37 38 2.623416 GAGAAGGTTTTTGGACACCTGG 59.377 50.000 0.00 0.00 43.05 4.45
46 47 6.205270 CCAAAAATGATGGGAGAAGGTTTTTG 59.795 38.462 11.39 11.39 41.27 2.44
53 54 4.082026 GGTGTCCAAAAATGATGGGAGAAG 60.082 45.833 0.00 0.00 38.54 2.85
56 57 3.056607 GTGGTGTCCAAAAATGATGGGAG 60.057 47.826 0.00 0.00 38.54 4.30
58 59 2.899256 AGTGGTGTCCAAAAATGATGGG 59.101 45.455 0.00 0.00 38.54 4.00
59 60 4.605640 AAGTGGTGTCCAAAAATGATGG 57.394 40.909 0.00 0.00 39.41 3.51
60 61 6.983307 TGTAAAAGTGGTGTCCAAAAATGATG 59.017 34.615 0.00 0.00 34.18 3.07
63 64 7.279758 ACAATGTAAAAGTGGTGTCCAAAAATG 59.720 33.333 0.00 0.00 34.18 2.32
69 70 4.787551 AGACAATGTAAAAGTGGTGTCCA 58.212 39.130 0.00 0.00 36.82 4.02
87 89 2.879756 GCAGCCTTGGTTCCAATAGACA 60.880 50.000 4.67 0.00 0.00 3.41
88 90 1.745653 GCAGCCTTGGTTCCAATAGAC 59.254 52.381 4.67 0.00 0.00 2.59
96 98 2.598394 TGCAGGCAGCCTTGGTTC 60.598 61.111 12.86 0.00 44.83 3.62
98 100 3.573229 TCTGCAGGCAGCCTTGGT 61.573 61.111 12.86 0.00 44.83 3.67
99 101 3.060615 GTCTGCAGGCAGCCTTGG 61.061 66.667 12.86 2.06 44.83 3.61
100 102 2.281970 TGTCTGCAGGCAGCCTTG 60.282 61.111 19.08 8.93 44.83 3.61
101 103 2.033757 CTGTCTGCAGGCAGCCTT 59.966 61.111 33.53 0.00 44.83 4.35
102 104 2.926779 TCTGTCTGCAGGCAGCCT 60.927 61.111 37.76 8.70 44.83 4.58
103 105 2.745492 GTCTGTCTGCAGGCAGCC 60.745 66.667 37.76 27.52 46.06 4.85
107 109 2.031616 TGCTGTCTGTCTGCAGGC 59.968 61.111 12.53 12.53 46.90 4.85
110 112 1.368950 GGTCTGCTGTCTGTCTGCA 59.631 57.895 6.34 6.34 45.98 4.41
111 113 1.375268 GGGTCTGCTGTCTGTCTGC 60.375 63.158 0.00 0.00 40.62 4.26
112 114 0.320247 GTGGGTCTGCTGTCTGTCTG 60.320 60.000 0.00 0.00 0.00 3.51
113 115 1.476007 GGTGGGTCTGCTGTCTGTCT 61.476 60.000 0.00 0.00 0.00 3.41
114 116 1.004440 GGTGGGTCTGCTGTCTGTC 60.004 63.158 0.00 0.00 0.00 3.51
115 117 2.872388 CGGTGGGTCTGCTGTCTGT 61.872 63.158 0.00 0.00 0.00 3.41
116 118 2.047844 CGGTGGGTCTGCTGTCTG 60.048 66.667 0.00 0.00 0.00 3.51
117 119 1.194781 ATTCGGTGGGTCTGCTGTCT 61.195 55.000 0.00 0.00 0.00 3.41
118 120 1.021390 CATTCGGTGGGTCTGCTGTC 61.021 60.000 0.00 0.00 0.00 3.51
119 121 1.003355 CATTCGGTGGGTCTGCTGT 60.003 57.895 0.00 0.00 0.00 4.40
135 137 4.144297 TGAACCAAAGCAGTAAAGCTCAT 58.856 39.130 0.00 0.00 45.89 2.90
139 141 3.255642 TGGATGAACCAAAGCAGTAAAGC 59.744 43.478 0.00 0.00 46.75 3.51
213 215 1.738350 TCTCTCTCTCGTTAAGCGTGG 59.262 52.381 0.00 0.00 42.13 4.94
214 216 2.673862 TCTCTCTCTCTCGTTAAGCGTG 59.326 50.000 0.00 0.00 42.13 5.34
217 219 3.002348 GCTCTCTCTCTCTCTCGTTAAGC 59.998 52.174 0.00 0.00 0.00 3.09
232 234 2.001812 TTCTTCACATGCGCTCTCTC 57.998 50.000 9.73 0.00 0.00 3.20
233 235 2.687700 ATTCTTCACATGCGCTCTCT 57.312 45.000 9.73 0.00 0.00 3.10
239 241 6.200286 ACGGTAGTTTATATTCTTCACATGCG 59.800 38.462 0.00 0.00 0.00 4.73
246 248 7.549615 AAAGCCACGGTAGTTTATATTCTTC 57.450 36.000 0.00 0.00 0.00 2.87
294 706 2.419574 GCAAATGGCAGCTGATTTCCAT 60.420 45.455 20.43 17.47 43.97 3.41
314 726 0.035739 TTCCGGGTGAAAGGTACTGC 59.964 55.000 0.00 0.00 40.86 4.40
315 727 2.356135 CATTCCGGGTGAAAGGTACTG 58.644 52.381 0.00 0.00 40.86 2.74
317 729 1.092348 GCATTCCGGGTGAAAGGTAC 58.908 55.000 0.00 0.00 36.33 3.34
318 730 0.693622 TGCATTCCGGGTGAAAGGTA 59.306 50.000 0.00 0.00 36.33 3.08
330 742 0.536915 GCAGGGAGAGGATGCATTCC 60.537 60.000 0.00 3.26 45.85 3.01
331 743 0.536915 GGCAGGGAGAGGATGCATTC 60.537 60.000 0.00 0.00 41.78 2.67
337 749 2.039624 ACGTGGCAGGGAGAGGAT 59.960 61.111 12.33 0.00 0.00 3.24
339 751 2.997315 TGACGTGGCAGGGAGAGG 60.997 66.667 12.33 0.00 0.00 3.69
357 769 2.030562 GACGGTGGTGACTGGTGG 59.969 66.667 0.00 0.00 32.03 4.61
372 784 6.189567 GCAACAAATGTATACGTACCATGAC 58.810 40.000 9.61 0.00 0.00 3.06
373 785 5.005875 CGCAACAAATGTATACGTACCATGA 59.994 40.000 9.61 0.00 0.00 3.07
374 786 5.194657 CGCAACAAATGTATACGTACCATG 58.805 41.667 9.61 4.04 0.00 3.66
375 787 4.271533 CCGCAACAAATGTATACGTACCAT 59.728 41.667 0.00 0.08 0.00 3.55
376 788 3.617706 CCGCAACAAATGTATACGTACCA 59.382 43.478 0.00 0.00 0.00 3.25
377 789 3.864583 TCCGCAACAAATGTATACGTACC 59.135 43.478 0.00 0.00 0.00 3.34
378 790 5.646467 ATCCGCAACAAATGTATACGTAC 57.354 39.130 0.00 0.00 0.00 3.67
379 791 6.665474 AAATCCGCAACAAATGTATACGTA 57.335 33.333 0.00 0.00 0.00 3.57
380 792 5.554822 AAATCCGCAACAAATGTATACGT 57.445 34.783 0.00 0.00 0.00 3.57
381 793 5.275695 GCAAAATCCGCAACAAATGTATACG 60.276 40.000 0.00 0.00 0.00 3.06
382 794 5.804979 AGCAAAATCCGCAACAAATGTATAC 59.195 36.000 0.00 0.00 0.00 1.47
383 795 5.960113 AGCAAAATCCGCAACAAATGTATA 58.040 33.333 0.00 0.00 0.00 1.47
384 796 4.819769 AGCAAAATCCGCAACAAATGTAT 58.180 34.783 0.00 0.00 0.00 2.29
385 797 4.250116 AGCAAAATCCGCAACAAATGTA 57.750 36.364 0.00 0.00 0.00 2.29
386 798 3.110447 AGCAAAATCCGCAACAAATGT 57.890 38.095 0.00 0.00 0.00 2.71
387 799 4.434593 GCTAAGCAAAATCCGCAACAAATG 60.435 41.667 0.00 0.00 0.00 2.32
388 800 3.679502 GCTAAGCAAAATCCGCAACAAAT 59.320 39.130 0.00 0.00 0.00 2.32
389 801 3.056304 GCTAAGCAAAATCCGCAACAAA 58.944 40.909 0.00 0.00 0.00 2.83
390 802 2.609244 GGCTAAGCAAAATCCGCAACAA 60.609 45.455 0.00 0.00 0.00 2.83
391 803 1.067915 GGCTAAGCAAAATCCGCAACA 60.068 47.619 0.00 0.00 0.00 3.33
392 804 1.629013 GGCTAAGCAAAATCCGCAAC 58.371 50.000 0.00 0.00 0.00 4.17
393 805 0.530288 GGGCTAAGCAAAATCCGCAA 59.470 50.000 0.00 0.00 0.00 4.85
394 806 1.319614 GGGGCTAAGCAAAATCCGCA 61.320 55.000 0.00 0.00 0.00 5.69
395 807 1.037579 AGGGGCTAAGCAAAATCCGC 61.038 55.000 0.00 0.00 0.00 5.54
396 808 1.025041 GAGGGGCTAAGCAAAATCCG 58.975 55.000 0.00 0.00 0.00 4.18
427 839 1.744320 AAAAAGGAGGCGGTGGTTGC 61.744 55.000 0.00 0.00 0.00 4.17
436 848 4.799586 GCTTAAGGAAACCAAAAAGGAGGC 60.800 45.833 4.29 0.00 41.22 4.70
447 859 1.241315 TGCAGCGGCTTAAGGAAACC 61.241 55.000 10.92 0.00 41.91 3.27
456 868 2.283101 TGGGAATTGCAGCGGCTT 60.283 55.556 10.92 0.00 41.91 4.35
460 872 0.109597 GTCAAGTGGGAATTGCAGCG 60.110 55.000 0.00 0.00 0.00 5.18
464 876 4.833390 AGTAGTAGTCAAGTGGGAATTGC 58.167 43.478 0.00 0.00 0.00 3.56
487 904 5.687285 GCGCACTATATTTTGAAATGAAGGG 59.313 40.000 0.30 0.00 0.00 3.95
488 905 5.687285 GGCGCACTATATTTTGAAATGAAGG 59.313 40.000 10.83 0.00 0.00 3.46
489 906 6.415867 CAGGCGCACTATATTTTGAAATGAAG 59.584 38.462 10.83 0.28 0.00 3.02
490 907 6.127758 ACAGGCGCACTATATTTTGAAATGAA 60.128 34.615 10.83 0.00 0.00 2.57
491 908 5.356751 ACAGGCGCACTATATTTTGAAATGA 59.643 36.000 10.83 0.00 0.00 2.57
492 909 5.581605 ACAGGCGCACTATATTTTGAAATG 58.418 37.500 10.83 0.00 0.00 2.32
493 910 5.835113 ACAGGCGCACTATATTTTGAAAT 57.165 34.783 10.83 0.00 0.00 2.17
494 911 6.935741 ATACAGGCGCACTATATTTTGAAA 57.064 33.333 10.83 0.00 0.00 2.69
495 912 6.935741 AATACAGGCGCACTATATTTTGAA 57.064 33.333 10.83 0.00 0.00 2.69
496 913 6.935741 AAATACAGGCGCACTATATTTTGA 57.064 33.333 10.83 0.00 0.00 2.69
497 914 7.097047 CGAAAAATACAGGCGCACTATATTTTG 60.097 37.037 23.44 14.57 36.22 2.44
498 915 6.910433 CGAAAAATACAGGCGCACTATATTTT 59.090 34.615 20.01 20.01 37.15 1.82
499 916 6.259167 TCGAAAAATACAGGCGCACTATATTT 59.741 34.615 10.83 12.39 0.00 1.40
500 917 5.756347 TCGAAAAATACAGGCGCACTATATT 59.244 36.000 10.83 6.67 0.00 1.28
501 918 5.294356 TCGAAAAATACAGGCGCACTATAT 58.706 37.500 10.83 0.00 0.00 0.86
502 919 4.684877 TCGAAAAATACAGGCGCACTATA 58.315 39.130 10.83 0.00 0.00 1.31
503 920 3.527533 TCGAAAAATACAGGCGCACTAT 58.472 40.909 10.83 0.00 0.00 2.12
504 921 2.927477 CTCGAAAAATACAGGCGCACTA 59.073 45.455 10.83 0.00 0.00 2.74
505 922 1.732259 CTCGAAAAATACAGGCGCACT 59.268 47.619 10.83 0.02 0.00 4.40
506 923 1.202031 CCTCGAAAAATACAGGCGCAC 60.202 52.381 10.83 0.00 0.00 5.34
507 924 1.083489 CCTCGAAAAATACAGGCGCA 58.917 50.000 10.83 0.00 0.00 6.09
508 925 1.062148 GACCTCGAAAAATACAGGCGC 59.938 52.381 0.00 0.00 0.00 6.53
509 926 2.603560 GAGACCTCGAAAAATACAGGCG 59.396 50.000 0.00 0.00 0.00 5.52
510 927 3.371285 GTGAGACCTCGAAAAATACAGGC 59.629 47.826 0.00 0.00 0.00 4.85
511 928 4.822026 AGTGAGACCTCGAAAAATACAGG 58.178 43.478 0.00 0.00 0.00 4.00
512 929 6.423905 TCAAAGTGAGACCTCGAAAAATACAG 59.576 38.462 0.00 0.00 0.00 2.74
513 930 6.202188 GTCAAAGTGAGACCTCGAAAAATACA 59.798 38.462 0.00 0.00 0.00 2.29
514 931 6.591261 GTCAAAGTGAGACCTCGAAAAATAC 58.409 40.000 0.00 0.00 0.00 1.89
515 932 6.780706 GTCAAAGTGAGACCTCGAAAAATA 57.219 37.500 0.00 0.00 0.00 1.40
516 933 5.674933 GTCAAAGTGAGACCTCGAAAAAT 57.325 39.130 0.00 0.00 0.00 1.82
526 943 8.573035 TGGTTAAATTTATGGTCAAAGTGAGAC 58.427 33.333 0.00 0.00 35.29 3.36
527 944 8.698973 TGGTTAAATTTATGGTCAAAGTGAGA 57.301 30.769 0.00 0.00 0.00 3.27
528 945 9.191995 GTTGGTTAAATTTATGGTCAAAGTGAG 57.808 33.333 0.00 0.00 0.00 3.51
529 946 8.696374 TGTTGGTTAAATTTATGGTCAAAGTGA 58.304 29.630 0.00 0.00 0.00 3.41
530 947 8.879342 TGTTGGTTAAATTTATGGTCAAAGTG 57.121 30.769 0.00 0.00 0.00 3.16
531 948 9.892130 TTTGTTGGTTAAATTTATGGTCAAAGT 57.108 25.926 0.00 0.00 0.00 2.66
534 951 9.110502 GGTTTTGTTGGTTAAATTTATGGTCAA 57.889 29.630 0.00 0.00 0.00 3.18
535 952 8.265055 TGGTTTTGTTGGTTAAATTTATGGTCA 58.735 29.630 0.00 0.00 0.00 4.02
536 953 8.664211 TGGTTTTGTTGGTTAAATTTATGGTC 57.336 30.769 0.00 0.00 0.00 4.02
537 954 8.894731 GTTGGTTTTGTTGGTTAAATTTATGGT 58.105 29.630 0.00 0.00 0.00 3.55
538 955 9.114952 AGTTGGTTTTGTTGGTTAAATTTATGG 57.885 29.630 0.00 0.00 0.00 2.74
539 956 9.928236 CAGTTGGTTTTGTTGGTTAAATTTATG 57.072 29.630 0.00 0.00 0.00 1.90
540 957 8.616942 GCAGTTGGTTTTGTTGGTTAAATTTAT 58.383 29.630 0.00 0.00 0.00 1.40
541 958 7.201530 CGCAGTTGGTTTTGTTGGTTAAATTTA 60.202 33.333 0.00 0.00 0.00 1.40
542 959 6.402658 CGCAGTTGGTTTTGTTGGTTAAATTT 60.403 34.615 0.00 0.00 0.00 1.82
543 960 5.064071 CGCAGTTGGTTTTGTTGGTTAAATT 59.936 36.000 0.00 0.00 0.00 1.82
544 961 4.568760 CGCAGTTGGTTTTGTTGGTTAAAT 59.431 37.500 0.00 0.00 0.00 1.40
545 962 3.927142 CGCAGTTGGTTTTGTTGGTTAAA 59.073 39.130 0.00 0.00 0.00 1.52
546 963 3.512680 CGCAGTTGGTTTTGTTGGTTAA 58.487 40.909 0.00 0.00 0.00 2.01
547 964 2.159226 CCGCAGTTGGTTTTGTTGGTTA 60.159 45.455 0.00 0.00 0.00 2.85
548 965 1.404851 CCGCAGTTGGTTTTGTTGGTT 60.405 47.619 0.00 0.00 0.00 3.67
549 966 0.174617 CCGCAGTTGGTTTTGTTGGT 59.825 50.000 0.00 0.00 0.00 3.67
550 967 1.151172 GCCGCAGTTGGTTTTGTTGG 61.151 55.000 0.00 0.00 0.00 3.77
551 968 1.478622 CGCCGCAGTTGGTTTTGTTG 61.479 55.000 0.00 0.00 0.00 3.33
552 969 1.226831 CGCCGCAGTTGGTTTTGTT 60.227 52.632 0.00 0.00 0.00 2.83
553 970 2.411290 CGCCGCAGTTGGTTTTGT 59.589 55.556 0.00 0.00 0.00 2.83
554 971 2.343163 TTCCGCCGCAGTTGGTTTTG 62.343 55.000 0.00 0.00 0.00 2.44
555 972 2.070654 CTTCCGCCGCAGTTGGTTTT 62.071 55.000 0.00 0.00 0.00 2.43
556 973 2.517402 TTCCGCCGCAGTTGGTTT 60.517 55.556 0.00 0.00 0.00 3.27
557 974 2.951475 TTCTTCCGCCGCAGTTGGTT 62.951 55.000 0.00 0.00 0.00 3.67
558 975 2.951475 TTTCTTCCGCCGCAGTTGGT 62.951 55.000 0.00 0.00 0.00 3.67
559 976 1.791103 TTTTCTTCCGCCGCAGTTGG 61.791 55.000 0.00 0.00 0.00 3.77
560 977 0.030101 TTTTTCTTCCGCCGCAGTTG 59.970 50.000 0.00 0.00 0.00 3.16
561 978 2.410466 TTTTTCTTCCGCCGCAGTT 58.590 47.368 0.00 0.00 0.00 3.16
562 979 4.150994 TTTTTCTTCCGCCGCAGT 57.849 50.000 0.00 0.00 0.00 4.40
610 1027 9.173939 CGGAAGCAAAAATATATCAGTGAATTC 57.826 33.333 0.00 0.00 0.00 2.17
638 1055 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
639 1056 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
640 1057 9.716507 CATAAATTTAACTACCAAGACCGATTG 57.283 33.333 1.21 0.00 0.00 2.67
641 1058 9.675464 TCATAAATTTAACTACCAAGACCGATT 57.325 29.630 1.21 0.00 0.00 3.34
642 1059 9.847224 ATCATAAATTTAACTACCAAGACCGAT 57.153 29.630 1.21 0.00 0.00 4.18
643 1060 9.321562 GATCATAAATTTAACTACCAAGACCGA 57.678 33.333 1.21 0.00 0.00 4.69
644 1061 9.104965 TGATCATAAATTTAACTACCAAGACCG 57.895 33.333 1.21 0.00 0.00 4.79
671 1088 9.631452 GCTTTCTTTATTCTCATGCTTTAACTT 57.369 29.630 0.00 0.00 0.00 2.66
672 1089 8.796475 TGCTTTCTTTATTCTCATGCTTTAACT 58.204 29.630 0.00 0.00 0.00 2.24
673 1090 8.854312 GTGCTTTCTTTATTCTCATGCTTTAAC 58.146 33.333 0.00 0.00 0.00 2.01
674 1091 8.796475 AGTGCTTTCTTTATTCTCATGCTTTAA 58.204 29.630 0.00 0.00 0.00 1.52
675 1092 8.239314 CAGTGCTTTCTTTATTCTCATGCTTTA 58.761 33.333 0.00 0.00 0.00 1.85
676 1093 7.088905 CAGTGCTTTCTTTATTCTCATGCTTT 58.911 34.615 0.00 0.00 0.00 3.51
677 1094 6.618811 CAGTGCTTTCTTTATTCTCATGCTT 58.381 36.000 0.00 0.00 0.00 3.91
678 1095 5.392811 GCAGTGCTTTCTTTATTCTCATGCT 60.393 40.000 8.18 0.00 0.00 3.79
679 1096 4.797349 GCAGTGCTTTCTTTATTCTCATGC 59.203 41.667 8.18 0.00 0.00 4.06
680 1097 5.946298 TGCAGTGCTTTCTTTATTCTCATG 58.054 37.500 17.60 0.00 0.00 3.07
681 1098 6.770746 ATGCAGTGCTTTCTTTATTCTCAT 57.229 33.333 17.60 0.00 0.00 2.90
682 1099 6.016024 ACAATGCAGTGCTTTCTTTATTCTCA 60.016 34.615 15.18 0.00 0.00 3.27
683 1100 6.385033 ACAATGCAGTGCTTTCTTTATTCTC 58.615 36.000 15.18 0.00 0.00 2.87
684 1101 6.336842 ACAATGCAGTGCTTTCTTTATTCT 57.663 33.333 15.18 0.00 0.00 2.40
685 1102 7.530010 TCTACAATGCAGTGCTTTCTTTATTC 58.470 34.615 15.18 0.00 0.00 1.75
686 1103 7.452880 TCTACAATGCAGTGCTTTCTTTATT 57.547 32.000 15.18 2.61 0.00 1.40
687 1104 7.452880 TTCTACAATGCAGTGCTTTCTTTAT 57.547 32.000 15.18 0.00 0.00 1.40
688 1105 6.875948 TTCTACAATGCAGTGCTTTCTTTA 57.124 33.333 15.18 6.41 0.00 1.85
689 1106 5.772825 TTCTACAATGCAGTGCTTTCTTT 57.227 34.783 15.18 5.60 0.00 2.52
690 1107 5.336213 CCATTCTACAATGCAGTGCTTTCTT 60.336 40.000 15.18 7.97 38.53 2.52
691 1108 4.157289 CCATTCTACAATGCAGTGCTTTCT 59.843 41.667 15.18 6.71 38.53 2.52
692 1109 4.156556 TCCATTCTACAATGCAGTGCTTTC 59.843 41.667 15.18 0.00 38.53 2.62
693 1110 4.081406 TCCATTCTACAATGCAGTGCTTT 58.919 39.130 15.18 13.72 38.53 3.51
694 1111 3.689347 TCCATTCTACAATGCAGTGCTT 58.311 40.909 15.18 7.26 38.53 3.91
695 1112 3.276857 CTCCATTCTACAATGCAGTGCT 58.723 45.455 15.18 4.28 38.53 4.40
696 1113 2.357009 CCTCCATTCTACAATGCAGTGC 59.643 50.000 15.18 8.58 38.53 4.40
697 1114 2.947652 CCCTCCATTCTACAATGCAGTG 59.052 50.000 13.51 13.51 38.53 3.66
698 1115 2.846206 TCCCTCCATTCTACAATGCAGT 59.154 45.455 0.00 0.00 38.53 4.40
699 1116 3.118112 ACTCCCTCCATTCTACAATGCAG 60.118 47.826 0.00 0.00 38.53 4.41
700 1117 2.846206 ACTCCCTCCATTCTACAATGCA 59.154 45.455 0.00 0.00 38.53 3.96
701 1118 3.567478 ACTCCCTCCATTCTACAATGC 57.433 47.619 0.00 0.00 38.53 3.56
702 1119 5.878406 AGTACTCCCTCCATTCTACAATG 57.122 43.478 0.00 0.00 39.45 2.82
703 1120 6.684538 AGTAGTACTCCCTCCATTCTACAAT 58.315 40.000 0.00 0.00 31.81 2.71
704 1121 6.088541 AGTAGTACTCCCTCCATTCTACAA 57.911 41.667 0.00 0.00 31.81 2.41
705 1122 5.686913 CGAGTAGTACTCCCTCCATTCTACA 60.687 48.000 21.92 0.00 42.12 2.74
706 1123 4.756135 CGAGTAGTACTCCCTCCATTCTAC 59.244 50.000 21.92 0.00 42.12 2.59
707 1124 4.411540 ACGAGTAGTACTCCCTCCATTCTA 59.588 45.833 21.92 0.00 42.12 2.10
708 1125 3.202595 ACGAGTAGTACTCCCTCCATTCT 59.797 47.826 21.92 0.00 42.12 2.40
709 1126 3.553904 ACGAGTAGTACTCCCTCCATTC 58.446 50.000 21.92 0.00 42.12 2.67
710 1127 3.666345 ACGAGTAGTACTCCCTCCATT 57.334 47.619 21.92 0.00 42.12 3.16
711 1128 3.202595 AGAACGAGTAGTACTCCCTCCAT 59.797 47.826 21.92 4.71 42.12 3.41
712 1129 2.575279 AGAACGAGTAGTACTCCCTCCA 59.425 50.000 21.92 0.00 42.12 3.86
713 1130 2.944349 CAGAACGAGTAGTACTCCCTCC 59.056 54.545 21.92 10.49 42.12 4.30
714 1131 2.944349 CCAGAACGAGTAGTACTCCCTC 59.056 54.545 21.92 17.76 42.12 4.30
715 1132 2.944991 GCCAGAACGAGTAGTACTCCCT 60.945 54.545 21.92 14.36 42.12 4.20
716 1133 1.404748 GCCAGAACGAGTAGTACTCCC 59.595 57.143 21.92 12.61 42.12 4.30
717 1134 2.355444 GAGCCAGAACGAGTAGTACTCC 59.645 54.545 21.92 10.16 42.12 3.85
718 1135 3.064271 CAGAGCCAGAACGAGTAGTACTC 59.936 52.174 18.77 18.77 41.71 2.59
719 1136 3.011119 CAGAGCCAGAACGAGTAGTACT 58.989 50.000 1.37 1.37 0.00 2.73
720 1137 2.478200 GCAGAGCCAGAACGAGTAGTAC 60.478 54.545 0.00 0.00 0.00 2.73
721 1138 1.743958 GCAGAGCCAGAACGAGTAGTA 59.256 52.381 0.00 0.00 0.00 1.82
741 1158 2.161713 TAATGTTGGGGGTGGCAGGG 62.162 60.000 0.00 0.00 0.00 4.45
742 1159 0.032217 ATAATGTTGGGGGTGGCAGG 60.032 55.000 0.00 0.00 0.00 4.85
745 1162 1.119684 GGAATAATGTTGGGGGTGGC 58.880 55.000 0.00 0.00 0.00 5.01
767 1184 2.125350 GGACAGCTTGGGCGAGAG 60.125 66.667 0.00 0.00 44.37 3.20
801 1218 2.908088 CTATTGCTGTTGCTGCCGCG 62.908 60.000 0.00 0.00 40.48 6.46
812 1229 3.620929 CAGGTATTGCTGCTATTGCTG 57.379 47.619 1.26 0.89 40.48 4.41
946 1364 0.469070 GAGCTGCTCTGATGGATGGT 59.531 55.000 21.93 0.00 0.00 3.55
952 1378 1.153409 AAGCCGAGCTGCTCTGATG 60.153 57.895 25.59 11.16 41.80 3.07
964 1390 1.315981 ACTCTCGATCTGCAAGCCGA 61.316 55.000 4.35 4.35 36.66 5.54
965 1391 1.140589 ACTCTCGATCTGCAAGCCG 59.859 57.895 0.00 0.00 0.00 5.52
966 1392 0.174389 TCACTCTCGATCTGCAAGCC 59.826 55.000 0.00 0.00 0.00 4.35
984 1410 0.179936 CCATTGCCTCTCACTCCCTC 59.820 60.000 0.00 0.00 0.00 4.30
985 1411 1.919600 GCCATTGCCTCTCACTCCCT 61.920 60.000 0.00 0.00 0.00 4.20
988 1414 1.086634 GTCGCCATTGCCTCTCACTC 61.087 60.000 0.00 0.00 0.00 3.51
989 1415 1.078848 GTCGCCATTGCCTCTCACT 60.079 57.895 0.00 0.00 0.00 3.41
990 1416 0.674895 AAGTCGCCATTGCCTCTCAC 60.675 55.000 0.00 0.00 0.00 3.51
991 1417 0.391661 GAAGTCGCCATTGCCTCTCA 60.392 55.000 0.00 0.00 0.00 3.27
1165 1598 0.252927 AAGGACTGGGGAAGGAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
1169 1602 0.193574 AGTGAAGGACTGGGGAAGGA 59.806 55.000 0.00 0.00 31.75 3.36
1176 1609 3.808728 TGAAGAACAAGTGAAGGACTGG 58.191 45.455 0.00 0.00 34.02 4.00
1184 1617 7.552687 ACATAGAACAAGTTGAAGAACAAGTGA 59.447 33.333 10.54 0.00 40.75 3.41
1186 1619 7.865706 ACATAGAACAAGTTGAAGAACAAGT 57.134 32.000 10.54 0.00 43.10 3.16
1187 1620 9.226345 GAAACATAGAACAAGTTGAAGAACAAG 57.774 33.333 10.54 0.00 39.30 3.16
1188 1621 8.956426 AGAAACATAGAACAAGTTGAAGAACAA 58.044 29.630 10.54 0.00 34.17 2.83
1189 1622 8.397906 CAGAAACATAGAACAAGTTGAAGAACA 58.602 33.333 10.54 0.00 34.17 3.18
1190 1623 8.398665 ACAGAAACATAGAACAAGTTGAAGAAC 58.601 33.333 10.54 0.00 0.00 3.01
1193 1661 7.852945 GTCACAGAAACATAGAACAAGTTGAAG 59.147 37.037 10.54 0.00 0.00 3.02
1214 1682 0.599991 AATTCGCGAGCTGTGTCACA 60.600 50.000 9.59 5.36 0.00 3.58
1215 1683 1.059264 GTAATTCGCGAGCTGTGTCAC 59.941 52.381 9.59 0.00 0.00 3.67
1218 1686 1.459592 GTTGTAATTCGCGAGCTGTGT 59.540 47.619 9.59 0.00 0.00 3.72
1220 1688 1.993370 GAGTTGTAATTCGCGAGCTGT 59.007 47.619 9.59 0.00 0.00 4.40
1304 1772 2.251893 GTACCTTCGAAGCTCTTGTCG 58.748 52.381 19.99 5.98 38.62 4.35
1326 1794 3.347216 ACAACATGTGCTAAGCTAAGGG 58.653 45.455 0.00 0.00 0.00 3.95
1334 1802 3.317150 CAGAGACGACAACATGTGCTAA 58.683 45.455 0.00 0.00 0.00 3.09
1337 1805 0.164647 GCAGAGACGACAACATGTGC 59.835 55.000 0.00 0.00 0.00 4.57
1342 1810 1.344438 AGGAATGCAGAGACGACAACA 59.656 47.619 0.00 0.00 0.00 3.33
1343 1811 2.086054 AGGAATGCAGAGACGACAAC 57.914 50.000 0.00 0.00 0.00 3.32
1344 1812 2.807967 CAAAGGAATGCAGAGACGACAA 59.192 45.455 0.00 0.00 0.00 3.18
1345 1813 2.416747 CAAAGGAATGCAGAGACGACA 58.583 47.619 0.00 0.00 0.00 4.35
1346 1814 1.129437 GCAAAGGAATGCAGAGACGAC 59.871 52.381 0.00 0.00 45.70 4.34
1347 1815 1.442769 GCAAAGGAATGCAGAGACGA 58.557 50.000 0.00 0.00 45.70 4.20
1348 1816 3.984292 GCAAAGGAATGCAGAGACG 57.016 52.632 0.00 0.00 45.70 4.18
1425 1893 3.448660 CCTCATTCCCAACATTCCTTTCC 59.551 47.826 0.00 0.00 0.00 3.13
1479 1947 5.823570 ACGTACTACACTCTGCAGAGAATAT 59.176 40.000 42.76 27.25 44.74 1.28
1498 1966 9.525409 AAACAATACTACCAATGATCTACGTAC 57.475 33.333 0.00 0.00 0.00 3.67
1500 1968 9.444600 AAAAACAATACTACCAATGATCTACGT 57.555 29.630 0.00 0.00 0.00 3.57
1501 1969 9.916397 GAAAAACAATACTACCAATGATCTACG 57.084 33.333 0.00 0.00 0.00 3.51
1512 1980 9.788960 GATCATCTTTGGAAAAACAATACTACC 57.211 33.333 0.00 0.00 0.00 3.18
1519 2067 7.826252 TGTTTTGGATCATCTTTGGAAAAACAA 59.174 29.630 7.65 0.00 40.99 2.83
1521 2069 7.279758 TGTGTTTTGGATCATCTTTGGAAAAAC 59.720 33.333 0.00 0.00 37.00 2.43
1544 2104 1.238439 GACCATCTTGGGTGTGTGTG 58.762 55.000 0.00 0.00 43.37 3.82
1560 2120 7.813645 AGAAAAATCTATGTACGTTTTGGACC 58.186 34.615 0.00 0.00 0.00 4.46
1561 2121 9.673454 AAAGAAAAATCTATGTACGTTTTGGAC 57.327 29.630 0.00 0.00 0.00 4.02
1583 2144 5.128499 TCTTGCATGGTTGGAAAAGAAAAGA 59.872 36.000 0.00 0.00 32.35 2.52
1595 2156 1.093159 GGAGCTCTCTTGCATGGTTG 58.907 55.000 14.64 0.00 34.99 3.77
1624 2194 0.033504 TCCGGTGTTGCACTCTCTTC 59.966 55.000 0.00 0.00 34.40 2.87
1628 2198 1.296715 GGATCCGGTGTTGCACTCT 59.703 57.895 0.00 0.00 34.40 3.24
1638 2208 0.896019 CCTATCTGCTCGGATCCGGT 60.896 60.000 32.79 14.61 40.25 5.28
1649 2219 4.408182 TTGAACTAAGCTCCCTATCTGC 57.592 45.455 0.00 0.00 0.00 4.26
1717 2287 2.882927 TAATGCCGATTAGTCGCACT 57.117 45.000 1.48 0.00 46.32 4.40
1722 2292 8.292448 ACAAATGATCAATAATGCCGATTAGTC 58.708 33.333 0.00 0.00 0.00 2.59
1743 2313 6.204882 GTGGTACTAGCTCACAAAGAACAAAT 59.795 38.462 0.00 0.00 0.00 2.32
1812 2384 2.159707 GCAAATGCGCTCGAGACTTTAA 60.160 45.455 18.75 0.00 0.00 1.52
1928 2500 9.720874 TCCAGAGGATAATAATGCAGATATAGT 57.279 33.333 0.00 0.00 0.00 2.12
1929 2501 9.979578 GTCCAGAGGATAATAATGCAGATATAG 57.020 37.037 0.00 0.00 32.73 1.31
1930 2502 9.720874 AGTCCAGAGGATAATAATGCAGATATA 57.279 33.333 0.00 0.00 32.73 0.86
1931 2503 8.484575 CAGTCCAGAGGATAATAATGCAGATAT 58.515 37.037 0.00 0.00 32.73 1.63
2080 2657 6.015688 AGGTATGATATGAACAATACGTCCGT 60.016 38.462 0.00 0.00 0.00 4.69
2109 2686 2.728846 GCACTGTCATGTATGCAAACCG 60.729 50.000 0.00 0.00 38.00 4.44
2123 2700 2.928757 GTGTCATGATCAGAGCACTGTC 59.071 50.000 11.07 8.53 43.81 3.51
2251 2828 1.002868 GCAGAAGAGCTTGCCCTCA 60.003 57.895 0.00 0.00 34.26 3.86
2450 3027 2.565841 AGAACCACACAGCAGAAAGAC 58.434 47.619 0.00 0.00 0.00 3.01
2827 3408 5.758296 AGAAAGCTTTGTTCTATTGTCGACA 59.242 36.000 18.30 15.76 33.53 4.35
2974 3561 2.100087 TGCATTGCTAATGATGCCACAG 59.900 45.455 10.49 0.00 46.16 3.66
3046 3633 6.585695 AATCTTTCTCAGTGAATGCATGTT 57.414 33.333 0.00 0.00 34.24 2.71
3047 3634 6.208007 TCAAATCTTTCTCAGTGAATGCATGT 59.792 34.615 0.00 0.00 34.24 3.21
3048 3635 6.617879 TCAAATCTTTCTCAGTGAATGCATG 58.382 36.000 0.00 0.00 34.24 4.06
3178 3765 6.319405 GGCCGAAATAAATTGGAACTAGGTAA 59.681 38.462 0.00 0.00 0.00 2.85
3199 3786 1.879796 GCAATGAGATTCTAGGGGCCG 60.880 57.143 0.00 0.00 0.00 6.13
3200 3787 1.546548 GGCAATGAGATTCTAGGGGCC 60.547 57.143 0.00 0.00 0.00 5.80
3226 3813 1.761784 TGATGGCCTTGTGCACTTTTT 59.238 42.857 19.41 0.00 43.89 1.94
3282 3869 5.011227 AGTGACTCTAGAGTTTTCTTCCCAC 59.989 44.000 25.86 22.93 42.66 4.61
3296 3883 1.547820 TCAGCTGGCAAGTGACTCTAG 59.452 52.381 15.13 0.00 0.00 2.43
3297 3884 1.632589 TCAGCTGGCAAGTGACTCTA 58.367 50.000 15.13 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.