Multiple sequence alignment - TraesCS5A01G102600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G102600 chr5A 100.000 4471 0 0 1 4471 156950618 156946148 0.000000e+00 8257.0
1 TraesCS5A01G102600 chr5A 89.529 191 15 4 1 188 635550743 635550931 2.080000e-58 237.0
2 TraesCS5A01G102600 chr5B 91.756 3748 178 59 588 4303 145023745 145020097 0.000000e+00 5088.0
3 TraesCS5A01G102600 chr5B 90.850 153 9 2 343 491 145024124 145023973 2.730000e-47 200.0
4 TraesCS5A01G102600 chr5B 90.265 113 10 1 186 298 145026889 145026778 3.600000e-31 147.0
5 TraesCS5A01G102600 chr5B 87.387 111 8 3 478 585 145023956 145023849 6.070000e-24 122.0
6 TraesCS5A01G102600 chr5D 88.425 2540 133 65 1 2474 133671531 133669087 0.000000e+00 2913.0
7 TraesCS5A01G102600 chr5D 94.533 1573 55 14 2744 4303 133668897 133667343 0.000000e+00 2399.0
8 TraesCS5A01G102600 chr5D 87.766 188 22 1 1 187 486744074 486744261 7.530000e-53 219.0
9 TraesCS5A01G102600 chr4A 90.957 188 16 1 1 187 465773217 465773404 7.420000e-63 252.0
10 TraesCS5A01G102600 chr4A 95.833 96 4 0 4374 4469 415536443 415536348 5.990000e-34 156.0
11 TraesCS5A01G102600 chr4A 94.898 98 5 0 4374 4471 354194543 354194640 2.150000e-33 154.0
12 TraesCS5A01G102600 chr4A 93.878 98 6 0 4374 4471 322001434 322001337 1.000000e-31 148.0
13 TraesCS5A01G102600 chr4A 94.737 95 5 0 4377 4471 491117004 491116910 1.000000e-31 148.0
14 TraesCS5A01G102600 chr4A 93.878 98 5 1 4374 4471 405214497 405214593 3.600000e-31 147.0
15 TraesCS5A01G102600 chr3B 90.674 193 13 4 1 190 670852797 670852607 7.420000e-63 252.0
16 TraesCS5A01G102600 chr3B 90.164 61 5 1 226 285 105478647 105478587 1.330000e-10 78.7
17 TraesCS5A01G102600 chr7D 90.957 188 10 4 1 186 620696761 620696579 3.450000e-61 246.0
18 TraesCS5A01G102600 chr3D 88.889 189 17 3 1 186 421709275 421709462 3.480000e-56 230.0
19 TraesCS5A01G102600 chr4D 88.298 188 20 2 1 187 111143325 111143139 1.620000e-54 224.0
20 TraesCS5A01G102600 chr2B 87.302 189 21 2 1 186 637898223 637898411 3.500000e-51 213.0
21 TraesCS5A01G102600 chr6A 94.898 98 5 0 4374 4471 379161946 379162043 2.150000e-33 154.0
22 TraesCS5A01G102600 chr6A 94.737 95 5 0 4377 4471 356547133 356547039 1.000000e-31 148.0
23 TraesCS5A01G102600 chr1A 94.898 98 4 1 4374 4471 268451132 268451036 7.750000e-33 152.0
24 TraesCS5A01G102600 chr1A 94.737 95 4 1 4377 4471 69254665 69254572 3.600000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G102600 chr5A 156946148 156950618 4470 True 8257.00 8257 100.0000 1 4471 1 chr5A.!!$R1 4470
1 TraesCS5A01G102600 chr5B 145020097 145026889 6792 True 1389.25 5088 90.0645 186 4303 4 chr5B.!!$R1 4117
2 TraesCS5A01G102600 chr5D 133667343 133671531 4188 True 2656.00 2913 91.4790 1 4303 2 chr5D.!!$R1 4302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 3660 0.248907 TGATCGATTCCGGCGAAGTC 60.249 55.0 9.30 0.00 41.52 3.01 F
1234 4020 0.397187 TTTGCCATGCATGCACCTTT 59.603 45.0 25.37 3.57 38.76 3.11 F
2272 5120 0.404040 TCTTTTTGATGCGGGGAGGT 59.596 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2474 5323 0.322816 CAAGGGATGGATATGCCCCG 60.323 60.0 3.43 0.0 45.29 5.73 R
2476 5325 0.407139 AGCAAGGGATGGATATGCCC 59.593 55.0 0.00 0.0 45.29 5.36 R
3706 6561 1.125093 TGAACGTCATCCCCACCACT 61.125 55.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.333416 CGAGAGTGTGAAGAAGGATAAATGA 58.667 40.000 0.00 0.00 0.00 2.57
65 66 7.389053 AGTGTGAAGAAGGATAAATGACAAGAC 59.611 37.037 0.00 0.00 0.00 3.01
68 69 7.604164 GTGAAGAAGGATAAATGACAAGACTGA 59.396 37.037 0.00 0.00 0.00 3.41
70 71 9.823647 GAAGAAGGATAAATGACAAGACTGATA 57.176 33.333 0.00 0.00 0.00 2.15
155 157 2.007608 GGGCGTGTGGTATTTTCTCTC 58.992 52.381 0.00 0.00 0.00 3.20
156 158 2.354805 GGGCGTGTGGTATTTTCTCTCT 60.355 50.000 0.00 0.00 0.00 3.10
158 160 2.599082 GCGTGTGGTATTTTCTCTCTCG 59.401 50.000 0.00 0.00 0.00 4.04
166 168 4.451096 GGTATTTTCTCTCTCGTTGCAACA 59.549 41.667 28.01 14.60 0.00 3.33
169 171 2.820059 TCTCTCTCGTTGCAACACAT 57.180 45.000 28.01 0.00 0.00 3.21
170 172 3.934457 TCTCTCTCGTTGCAACACATA 57.066 42.857 28.01 10.09 0.00 2.29
171 173 3.838120 TCTCTCTCGTTGCAACACATAG 58.162 45.455 28.01 18.23 0.00 2.23
172 174 3.506067 TCTCTCTCGTTGCAACACATAGA 59.494 43.478 28.01 20.90 0.00 1.98
180 182 4.905866 CGTTGCAACACATAGACTCTTTTG 59.094 41.667 28.01 3.19 0.00 2.44
224 226 2.622064 AGGCAGGTAAATCACGGATC 57.378 50.000 0.00 0.00 0.00 3.36
286 288 5.065914 GGCCAGATAAATCATGAGCTAACA 58.934 41.667 0.09 0.00 0.00 2.41
299 2927 5.390087 TGAGCTAACATAGTACTCCCTCT 57.610 43.478 0.00 0.00 0.00 3.69
328 2956 9.829507 TCACAAATTTTGAGGTGTTTTTGATAT 57.170 25.926 15.81 0.00 33.17 1.63
408 3039 6.321435 CGTACATCTATATATGAGGGGAGCAA 59.679 42.308 5.19 0.00 0.00 3.91
585 3256 1.369625 ATAAGTGTGCCAGCTTACGC 58.630 50.000 0.00 0.00 31.06 4.42
586 3257 1.011968 TAAGTGTGCCAGCTTACGCG 61.012 55.000 3.53 3.53 42.32 6.01
617 3392 9.485206 TTCCAAATAAAAGCGGATAGTACTATC 57.515 33.333 27.94 27.94 40.83 2.08
651 3426 3.064408 CAGATAACAATCATGCACGTGCT 59.936 43.478 37.59 22.19 42.66 4.40
700 3475 2.217038 TTGCTGACTCGAAGGCCCT 61.217 57.895 0.00 0.00 0.00 5.19
739 3514 1.158484 CGACACTCTCGAGGGCGATA 61.158 60.000 13.59 0.00 46.80 2.92
742 3517 2.152830 ACACTCTCGAGGGCGATATAC 58.847 52.381 13.59 0.00 46.80 1.47
795 3574 3.303132 GCGCTCGGTTAATCAGGTAATTG 60.303 47.826 0.00 0.00 0.00 2.32
863 3642 4.909880 CCATCGTGTGTGTATATACTCGTG 59.090 45.833 13.89 7.92 36.64 4.35
864 3643 5.277634 CCATCGTGTGTGTATATACTCGTGA 60.278 44.000 13.89 7.34 36.64 4.35
865 3644 5.996669 TCGTGTGTGTATATACTCGTGAT 57.003 39.130 13.89 0.00 36.64 3.06
866 3645 5.982324 TCGTGTGTGTATATACTCGTGATC 58.018 41.667 13.89 0.00 36.64 2.92
867 3646 4.839174 CGTGTGTGTATATACTCGTGATCG 59.161 45.833 13.89 8.29 32.60 3.69
868 3647 5.332808 CGTGTGTGTATATACTCGTGATCGA 60.333 44.000 13.89 0.00 44.12 3.59
869 3648 6.600350 GTGTGTGTATATACTCGTGATCGAT 58.400 40.000 13.89 0.00 45.21 3.59
870 3649 7.076362 GTGTGTGTATATACTCGTGATCGATT 58.924 38.462 13.89 0.00 45.21 3.34
871 3650 7.268659 GTGTGTGTATATACTCGTGATCGATTC 59.731 40.741 13.89 0.00 45.21 2.52
872 3651 6.741811 GTGTGTATATACTCGTGATCGATTCC 59.258 42.308 13.89 0.00 45.21 3.01
873 3652 5.958372 GTGTATATACTCGTGATCGATTCCG 59.042 44.000 13.89 5.30 45.21 4.30
874 3653 2.991434 ATACTCGTGATCGATTCCGG 57.009 50.000 14.95 0.00 45.21 5.14
875 3654 0.309922 TACTCGTGATCGATTCCGGC 59.690 55.000 14.95 0.00 45.21 6.13
876 3655 2.011349 CTCGTGATCGATTCCGGCG 61.011 63.158 14.95 0.00 45.21 6.46
877 3656 2.025584 CGTGATCGATTCCGGCGA 59.974 61.111 9.30 5.11 42.48 5.54
878 3657 1.587876 CGTGATCGATTCCGGCGAA 60.588 57.895 9.30 0.58 41.52 4.70
879 3658 1.540607 CGTGATCGATTCCGGCGAAG 61.541 60.000 9.30 0.00 41.52 3.79
880 3659 0.527817 GTGATCGATTCCGGCGAAGT 60.528 55.000 9.30 0.00 41.52 3.01
881 3660 0.248907 TGATCGATTCCGGCGAAGTC 60.249 55.000 9.30 0.00 41.52 3.01
902 3681 1.961180 ATCCCCACTTCCTTCTCGCG 61.961 60.000 0.00 0.00 0.00 5.87
923 3702 5.116528 CGCGTTTCTCCTCCAAAAATAAAAC 59.883 40.000 0.00 0.00 0.00 2.43
979 3759 3.194755 TCAACTAGCTACGCTCCAATTCA 59.805 43.478 0.00 0.00 40.44 2.57
1033 3815 4.521062 AGCGCCATGACGAGCTCC 62.521 66.667 5.30 0.00 34.48 4.70
1153 3935 5.865552 GTCATCTACGGTTACAGTAAGCAAA 59.134 40.000 19.96 8.08 36.01 3.68
1156 3938 2.497138 ACGGTTACAGTAAGCAAACCC 58.503 47.619 19.96 4.67 38.52 4.11
1184 3966 2.233431 CCTACCTGCAGATGATCTAGCC 59.767 54.545 17.39 0.00 0.00 3.93
1191 3973 2.554462 GCAGATGATCTAGCCGTGTCTA 59.446 50.000 0.00 0.00 0.00 2.59
1204 3990 3.809832 GCCGTGTCTAGAATATGCATGTT 59.190 43.478 10.16 9.33 0.00 2.71
1205 3991 4.273480 GCCGTGTCTAGAATATGCATGTTT 59.727 41.667 10.16 2.65 0.00 2.83
1206 3992 5.559035 GCCGTGTCTAGAATATGCATGTTTC 60.559 44.000 10.16 12.27 0.00 2.78
1207 3993 5.050091 CCGTGTCTAGAATATGCATGTTTCC 60.050 44.000 10.16 0.00 0.00 3.13
1208 3994 5.523552 CGTGTCTAGAATATGCATGTTTCCA 59.476 40.000 10.16 1.06 0.00 3.53
1209 3995 6.203530 CGTGTCTAGAATATGCATGTTTCCAT 59.796 38.462 10.16 0.98 0.00 3.41
1234 4020 0.397187 TTTGCCATGCATGCACCTTT 59.603 45.000 25.37 3.57 38.76 3.11
1245 4031 3.564511 CATGCACCTTTCTACGTTTTGG 58.435 45.455 0.00 0.00 0.00 3.28
1322 4112 3.990318 ATTCATCGCGTCAGTAGATCA 57.010 42.857 5.77 0.00 0.00 2.92
1330 4120 5.886992 TCGCGTCAGTAGATCAATTAAGAA 58.113 37.500 5.77 0.00 0.00 2.52
1335 4125 7.253817 GCGTCAGTAGATCAATTAAGAACACTC 60.254 40.741 0.00 0.00 0.00 3.51
1657 4451 4.492160 TCGGCGATCACCAGCGTC 62.492 66.667 4.99 0.00 0.00 5.19
1789 4583 0.915364 GTGGCTTCCTCTCCTCCATT 59.085 55.000 0.00 0.00 0.00 3.16
1792 4586 1.207791 GCTTCCTCTCCTCCATTCCA 58.792 55.000 0.00 0.00 0.00 3.53
1809 4603 1.066143 TCCAGAGGTTTGCTCGATTCC 60.066 52.381 0.00 0.00 0.00 3.01
1812 4606 2.417933 CAGAGGTTTGCTCGATTCCTTG 59.582 50.000 0.00 0.00 0.00 3.61
1814 4608 1.351017 AGGTTTGCTCGATTCCTTGGA 59.649 47.619 0.00 0.00 0.00 3.53
1833 4633 4.693283 TGGAGTAATTGATCTTACGGCTG 58.307 43.478 0.00 0.00 36.83 4.85
1834 4634 4.058817 GGAGTAATTGATCTTACGGCTGG 58.941 47.826 0.00 0.00 36.83 4.85
1844 4646 8.918202 TTGATCTTACGGCTGGATTAATTAAT 57.082 30.769 10.51 10.51 0.00 1.40
1853 4655 9.581099 ACGGCTGGATTAATTAATTAACTTTTG 57.419 29.630 20.21 11.88 35.31 2.44
1919 4752 2.965147 TGCCTGTATGATGCTAGCTACA 59.035 45.455 17.23 14.39 0.00 2.74
1920 4753 3.006217 TGCCTGTATGATGCTAGCTACAG 59.994 47.826 24.61 24.61 40.35 2.74
1921 4754 3.006323 GCCTGTATGATGCTAGCTACAGT 59.994 47.826 27.13 15.42 39.47 3.55
1922 4755 4.218635 GCCTGTATGATGCTAGCTACAGTA 59.781 45.833 27.13 14.75 39.47 2.74
1923 4756 5.105554 GCCTGTATGATGCTAGCTACAGTAT 60.106 44.000 27.13 10.80 39.47 2.12
1948 4781 2.684881 CCTATTTTGGGCTGTGCTAGTG 59.315 50.000 0.00 0.00 0.00 2.74
2052 4892 3.898123 AGGATTGCTGGATCAGTACGTAT 59.102 43.478 0.00 0.00 33.43 3.06
2053 4893 5.077564 AGGATTGCTGGATCAGTACGTATA 58.922 41.667 0.00 0.00 33.43 1.47
2054 4894 5.047943 AGGATTGCTGGATCAGTACGTATAC 60.048 44.000 0.00 0.00 33.43 1.47
2056 4896 3.208594 TGCTGGATCAGTACGTATACGT 58.791 45.455 31.42 31.42 42.82 3.57
2059 4899 6.613110 GCTGGATCAGTACGTATACGTGGG 62.613 54.167 34.91 24.26 41.53 4.61
2079 4924 4.263594 TGGGGTGGAGGAAACAAATACTAC 60.264 45.833 0.00 0.00 0.00 2.73
2081 4926 5.183969 GGGTGGAGGAAACAAATACTACTC 58.816 45.833 0.00 0.00 0.00 2.59
2122 4969 4.965814 TGCAGAGAAAGACAGAGTGATTT 58.034 39.130 0.00 0.00 0.00 2.17
2154 5001 5.937975 AAAATCCTTGAGAGAGAGAGAGG 57.062 43.478 0.00 0.00 0.00 3.69
2155 5002 3.600448 ATCCTTGAGAGAGAGAGAGGG 57.400 52.381 0.00 0.00 0.00 4.30
2156 5003 2.567862 TCCTTGAGAGAGAGAGAGGGA 58.432 52.381 0.00 0.00 0.00 4.20
2157 5004 2.509548 TCCTTGAGAGAGAGAGAGGGAG 59.490 54.545 0.00 0.00 0.00 4.30
2158 5005 2.509548 CCTTGAGAGAGAGAGAGGGAGA 59.490 54.545 0.00 0.00 0.00 3.71
2159 5006 3.434167 CCTTGAGAGAGAGAGAGGGAGAG 60.434 56.522 0.00 0.00 0.00 3.20
2160 5007 2.126882 TGAGAGAGAGAGAGGGAGAGG 58.873 57.143 0.00 0.00 0.00 3.69
2161 5008 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
2162 5009 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
2163 5010 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
2164 5011 1.010793 AGAGAGAGAGGGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
2165 5012 1.421646 GAGAGAGAGGGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2166 5013 0.478507 GAGAGAGGGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
2268 5116 1.613437 ACTTGTCTTTTTGATGCGGGG 59.387 47.619 0.00 0.00 0.00 5.73
2269 5117 1.885887 CTTGTCTTTTTGATGCGGGGA 59.114 47.619 0.00 0.00 0.00 4.81
2272 5120 0.404040 TCTTTTTGATGCGGGGAGGT 59.596 50.000 0.00 0.00 0.00 3.85
2273 5121 1.631388 TCTTTTTGATGCGGGGAGGTA 59.369 47.619 0.00 0.00 0.00 3.08
2274 5122 2.241176 TCTTTTTGATGCGGGGAGGTAT 59.759 45.455 0.00 0.00 0.00 2.73
2275 5123 3.456644 TCTTTTTGATGCGGGGAGGTATA 59.543 43.478 0.00 0.00 0.00 1.47
2276 5124 4.104102 TCTTTTTGATGCGGGGAGGTATAT 59.896 41.667 0.00 0.00 0.00 0.86
2277 5125 3.695830 TTTGATGCGGGGAGGTATATC 57.304 47.619 0.00 0.00 0.00 1.63
2278 5126 1.182667 TGATGCGGGGAGGTATATCG 58.817 55.000 0.00 0.00 0.00 2.92
2279 5127 1.272258 TGATGCGGGGAGGTATATCGA 60.272 52.381 0.00 0.00 0.00 3.59
2280 5128 1.822990 GATGCGGGGAGGTATATCGAA 59.177 52.381 0.00 0.00 0.00 3.71
2281 5129 0.963962 TGCGGGGAGGTATATCGAAC 59.036 55.000 0.00 0.00 0.00 3.95
2282 5130 1.254954 GCGGGGAGGTATATCGAACT 58.745 55.000 0.00 0.00 0.00 3.01
2283 5131 1.617357 GCGGGGAGGTATATCGAACTT 59.383 52.381 0.00 0.00 0.00 2.66
2284 5132 2.821969 GCGGGGAGGTATATCGAACTTA 59.178 50.000 0.00 0.00 0.00 2.24
2323 5172 7.172190 CGCAGAGTTATTATCCAGTCATGATTT 59.828 37.037 0.00 0.00 0.00 2.17
2379 5228 4.388165 TGAATGCACCGCAAATTATTGTTG 59.612 37.500 0.00 0.00 43.62 3.33
2387 5236 5.218885 CCGCAAATTATTGTTGTGTCAAGA 58.781 37.500 0.00 0.00 38.85 3.02
2411 5260 4.719273 AGAGTAGATGAAAGGAAAGGAGGG 59.281 45.833 0.00 0.00 0.00 4.30
2412 5261 4.699994 AGTAGATGAAAGGAAAGGAGGGA 58.300 43.478 0.00 0.00 0.00 4.20
2474 5323 5.637006 ATCTATCACGATCTGTAAGGAGC 57.363 43.478 0.00 0.00 0.00 4.70
2478 5327 1.364171 CGATCTGTAAGGAGCGGGG 59.636 63.158 0.00 0.00 40.74 5.73
2479 5328 1.069935 GATCTGTAAGGAGCGGGGC 59.930 63.158 0.00 0.00 0.00 5.80
2480 5329 1.686325 GATCTGTAAGGAGCGGGGCA 61.686 60.000 0.00 0.00 0.00 5.36
2481 5330 1.056700 ATCTGTAAGGAGCGGGGCAT 61.057 55.000 0.00 0.00 0.00 4.40
2485 5334 0.036294 GTAAGGAGCGGGGCATATCC 60.036 60.000 0.00 0.00 0.00 2.59
2497 5346 2.601905 GGCATATCCATCCCTTGCTTT 58.398 47.619 0.00 0.00 33.86 3.51
2501 5350 2.806945 ATCCATCCCTTGCTTTCGAA 57.193 45.000 0.00 0.00 0.00 3.71
2515 5364 3.273434 CTTTCGAAGAATGCCTGGATGA 58.727 45.455 0.00 0.00 45.90 2.92
2577 5426 0.251073 GCTTTCCCGGTTAGCAGGTA 59.749 55.000 13.07 0.00 35.05 3.08
2583 5432 2.431782 TCCCGGTTAGCAGGTACATTAC 59.568 50.000 0.00 0.00 0.00 1.89
2629 5482 2.829003 CTCGCCGTCTAGCTCCCA 60.829 66.667 0.00 0.00 0.00 4.37
2634 5487 0.750850 GCCGTCTAGCTCCCATTACA 59.249 55.000 0.00 0.00 0.00 2.41
2636 5489 2.224305 GCCGTCTAGCTCCCATTACAAT 60.224 50.000 0.00 0.00 0.00 2.71
2671 5524 1.598882 TCTCATCGAGATCGTGAGGG 58.401 55.000 22.58 8.85 42.28 4.30
2686 5540 5.827666 TCGTGAGGGAAAAGATTGAAAAAC 58.172 37.500 0.00 0.00 0.00 2.43
2709 5563 8.561738 AACTAACAAATTACCTACTCCATGTG 57.438 34.615 0.00 0.00 0.00 3.21
2714 5568 7.231467 ACAAATTACCTACTCCATGTGAAAGT 58.769 34.615 0.00 0.00 0.00 2.66
2715 5569 8.380099 ACAAATTACCTACTCCATGTGAAAGTA 58.620 33.333 0.00 0.00 0.00 2.24
2716 5570 9.226606 CAAATTACCTACTCCATGTGAAAGTAA 57.773 33.333 0.00 0.00 0.00 2.24
2717 5571 9.802039 AAATTACCTACTCCATGTGAAAGTAAA 57.198 29.630 0.00 0.00 0.00 2.01
2718 5572 9.802039 AATTACCTACTCCATGTGAAAGTAAAA 57.198 29.630 0.00 0.00 0.00 1.52
2719 5573 8.842358 TTACCTACTCCATGTGAAAGTAAAAG 57.158 34.615 0.00 0.00 0.00 2.27
2800 5654 5.823209 TGCCTGTCAGTCATAAATTCATG 57.177 39.130 0.00 0.00 0.00 3.07
2801 5655 5.255687 TGCCTGTCAGTCATAAATTCATGT 58.744 37.500 0.00 0.00 0.00 3.21
2835 5689 4.513442 TGGGTCAATACATGCTGTCTTAC 58.487 43.478 0.00 0.00 0.00 2.34
2842 5696 1.279271 ACATGCTGTCTTACTCACCCC 59.721 52.381 0.00 0.00 0.00 4.95
2873 5727 3.250323 CTGCCACGTCAGATCGCG 61.250 66.667 0.00 0.00 36.19 5.87
2911 5765 0.317436 CTCAGCTACATCGCCGACTC 60.317 60.000 0.00 0.00 0.00 3.36
3056 5910 4.953868 CACGGCCACCACGACGAA 62.954 66.667 2.24 0.00 34.93 3.85
3059 5913 4.980805 GGCCACCACGACGAAGCA 62.981 66.667 0.00 0.00 0.00 3.91
3136 5990 3.617538 GATCGTTTCCTCCGCGCG 61.618 66.667 25.67 25.67 0.00 6.86
3158 6012 2.983725 AAAGCTCCAAGCAGGCCGTT 62.984 55.000 0.00 0.00 45.56 4.44
3510 6365 0.109039 GGCTTCTCTCTTCGAGCGTT 60.109 55.000 0.00 0.00 39.70 4.84
3706 6561 3.950794 GAACCGGGTGATGAGCGCA 62.951 63.158 11.47 0.00 0.00 6.09
3763 6618 3.070576 GGCATGGCCGGAAGCTTT 61.071 61.111 5.05 0.00 39.62 3.51
3891 6747 1.737735 CAAGTCGCCATCGCTGACA 60.738 57.895 9.14 0.00 39.46 3.58
4037 6894 1.153168 CCAACCGGCATCCTAGTGG 60.153 63.158 0.00 0.00 0.00 4.00
4080 6938 0.827925 TGAGGTCTCGGAGCACTGTT 60.828 55.000 0.00 0.00 31.89 3.16
4097 6955 6.314896 AGCACTGTTCAACTAAGATTGCTATC 59.685 38.462 0.00 0.00 43.00 2.08
4098 6956 6.092670 GCACTGTTCAACTAAGATTGCTATCA 59.907 38.462 10.78 0.00 35.09 2.15
4117 6975 6.372659 GCTATCAACCCTATACAATGATGTGG 59.627 42.308 0.00 0.00 40.84 4.17
4173 7034 7.744087 TTTGTCATTGTACTTTGCAGTATCT 57.256 32.000 0.00 0.00 37.83 1.98
4205 7066 1.571919 ATAGCGAGTGAAATGCGTCC 58.428 50.000 0.00 0.00 0.00 4.79
4210 7071 2.876091 CGAGTGAAATGCGTCCTTAGA 58.124 47.619 0.00 0.00 0.00 2.10
4212 7073 3.487574 CGAGTGAAATGCGTCCTTAGATC 59.512 47.826 0.00 0.00 0.00 2.75
4278 7141 7.552687 AGAACTGATCGATTTAAGCCATAAACA 59.447 33.333 0.00 0.00 36.35 2.83
4283 7146 5.860641 TCGATTTAAGCCATAAACACGTTC 58.139 37.500 14.39 2.78 36.35 3.95
4308 7175 9.602568 TCATTATAAATACAGCCTAAAACACGA 57.397 29.630 0.00 0.00 0.00 4.35
4309 7176 9.646336 CATTATAAATACAGCCTAAAACACGAC 57.354 33.333 0.00 0.00 0.00 4.34
4310 7177 8.774890 TTATAAATACAGCCTAAAACACGACA 57.225 30.769 0.00 0.00 0.00 4.35
4311 7178 7.675962 ATAAATACAGCCTAAAACACGACAA 57.324 32.000 0.00 0.00 0.00 3.18
4312 7179 5.607119 AATACAGCCTAAAACACGACAAG 57.393 39.130 0.00 0.00 0.00 3.16
4313 7180 3.188159 ACAGCCTAAAACACGACAAGA 57.812 42.857 0.00 0.00 0.00 3.02
4314 7181 3.740115 ACAGCCTAAAACACGACAAGAT 58.260 40.909 0.00 0.00 0.00 2.40
4315 7182 4.890088 ACAGCCTAAAACACGACAAGATA 58.110 39.130 0.00 0.00 0.00 1.98
4316 7183 5.302360 ACAGCCTAAAACACGACAAGATAA 58.698 37.500 0.00 0.00 0.00 1.75
4317 7184 5.178809 ACAGCCTAAAACACGACAAGATAAC 59.821 40.000 0.00 0.00 0.00 1.89
4318 7185 5.408604 CAGCCTAAAACACGACAAGATAACT 59.591 40.000 0.00 0.00 0.00 2.24
4319 7186 5.995897 AGCCTAAAACACGACAAGATAACTT 59.004 36.000 0.00 0.00 36.73 2.66
4320 7187 6.485648 AGCCTAAAACACGACAAGATAACTTT 59.514 34.615 0.00 0.00 33.70 2.66
4321 7188 7.658575 AGCCTAAAACACGACAAGATAACTTTA 59.341 33.333 0.00 0.00 33.70 1.85
4322 7189 7.743400 GCCTAAAACACGACAAGATAACTTTAC 59.257 37.037 0.00 0.00 33.70 2.01
4323 7190 7.948363 CCTAAAACACGACAAGATAACTTTACG 59.052 37.037 0.00 6.73 37.74 3.18
4324 7191 6.833342 AAACACGACAAGATAACTTTACGT 57.167 33.333 0.00 0.00 41.73 3.57
4325 7192 6.443876 AACACGACAAGATAACTTTACGTC 57.556 37.500 0.00 2.62 40.38 4.34
4326 7193 5.522456 ACACGACAAGATAACTTTACGTCA 58.478 37.500 0.00 0.00 40.38 4.35
4327 7194 5.400485 ACACGACAAGATAACTTTACGTCAC 59.600 40.000 0.00 0.00 40.38 3.67
4328 7195 5.400188 CACGACAAGATAACTTTACGTCACA 59.600 40.000 0.00 0.00 40.38 3.58
4329 7196 5.628193 ACGACAAGATAACTTTACGTCACAG 59.372 40.000 0.00 0.00 39.24 3.66
4330 7197 5.628193 CGACAAGATAACTTTACGTCACAGT 59.372 40.000 0.00 0.00 33.70 3.55
4331 7198 6.143438 CGACAAGATAACTTTACGTCACAGTT 59.857 38.462 10.70 10.70 33.70 3.16
4332 7199 7.306399 CGACAAGATAACTTTACGTCACAGTTT 60.306 37.037 11.04 2.25 33.70 2.66
4333 7200 7.848491 ACAAGATAACTTTACGTCACAGTTTC 58.152 34.615 11.04 9.04 33.70 2.78
4334 7201 7.709613 ACAAGATAACTTTACGTCACAGTTTCT 59.290 33.333 11.04 10.54 33.70 2.52
4335 7202 8.548721 CAAGATAACTTTACGTCACAGTTTCTT 58.451 33.333 11.04 14.12 33.26 2.52
4336 7203 8.073355 AGATAACTTTACGTCACAGTTTCTTG 57.927 34.615 11.04 0.00 32.88 3.02
4337 7204 7.924412 AGATAACTTTACGTCACAGTTTCTTGA 59.076 33.333 11.04 0.00 32.88 3.02
4338 7205 6.730960 AACTTTACGTCACAGTTTCTTGAA 57.269 33.333 0.00 0.00 0.00 2.69
4339 7206 6.730960 ACTTTACGTCACAGTTTCTTGAAA 57.269 33.333 0.00 0.00 0.00 2.69
4340 7207 6.540205 ACTTTACGTCACAGTTTCTTGAAAC 58.460 36.000 15.95 15.95 0.00 2.78
4341 7208 6.370718 ACTTTACGTCACAGTTTCTTGAAACT 59.629 34.615 19.42 19.42 43.26 2.66
4342 7209 4.859629 ACGTCACAGTTTCTTGAAACTC 57.140 40.909 21.53 12.12 40.74 3.01
4343 7210 4.504858 ACGTCACAGTTTCTTGAAACTCT 58.495 39.130 21.53 10.98 40.74 3.24
4344 7211 4.935808 ACGTCACAGTTTCTTGAAACTCTT 59.064 37.500 21.53 11.68 40.74 2.85
4345 7212 5.411669 ACGTCACAGTTTCTTGAAACTCTTT 59.588 36.000 21.53 9.67 40.74 2.52
4346 7213 5.960105 CGTCACAGTTTCTTGAAACTCTTTC 59.040 40.000 21.53 13.34 40.74 2.62
4347 7214 6.258899 GTCACAGTTTCTTGAAACTCTTTCC 58.741 40.000 21.53 8.81 40.74 3.13
4348 7215 5.064707 TCACAGTTTCTTGAAACTCTTTCCG 59.935 40.000 21.53 13.75 40.74 4.30
4349 7216 4.941873 ACAGTTTCTTGAAACTCTTTCCGT 59.058 37.500 21.53 14.26 40.74 4.69
4350 7217 5.414765 ACAGTTTCTTGAAACTCTTTCCGTT 59.585 36.000 21.53 0.69 40.74 4.44
4351 7218 5.739161 CAGTTTCTTGAAACTCTTTCCGTTG 59.261 40.000 21.53 8.28 40.74 4.10
4352 7219 4.893424 TTCTTGAAACTCTTTCCGTTGG 57.107 40.909 0.00 0.00 38.90 3.77
4353 7220 4.145365 TCTTGAAACTCTTTCCGTTGGA 57.855 40.909 0.00 0.00 38.90 3.53
4354 7221 4.519213 TCTTGAAACTCTTTCCGTTGGAA 58.481 39.130 0.00 0.00 40.27 3.53
4355 7222 5.130350 TCTTGAAACTCTTTCCGTTGGAAT 58.870 37.500 0.00 0.00 41.71 3.01
4356 7223 5.592688 TCTTGAAACTCTTTCCGTTGGAATT 59.407 36.000 0.00 0.00 41.71 2.17
4357 7224 5.181690 TGAAACTCTTTCCGTTGGAATTG 57.818 39.130 0.00 0.00 41.71 2.32
4358 7225 4.884744 TGAAACTCTTTCCGTTGGAATTGA 59.115 37.500 0.00 1.18 41.71 2.57
4359 7226 5.534654 TGAAACTCTTTCCGTTGGAATTGAT 59.465 36.000 0.00 0.00 41.71 2.57
4360 7227 6.040391 TGAAACTCTTTCCGTTGGAATTGATT 59.960 34.615 0.00 0.00 41.71 2.57
4361 7228 6.405278 AACTCTTTCCGTTGGAATTGATTT 57.595 33.333 0.00 0.36 41.71 2.17
4362 7229 6.405278 ACTCTTTCCGTTGGAATTGATTTT 57.595 33.333 0.00 0.00 41.71 1.82
4363 7230 6.215845 ACTCTTTCCGTTGGAATTGATTTTG 58.784 36.000 0.00 0.00 41.71 2.44
4364 7231 6.040391 ACTCTTTCCGTTGGAATTGATTTTGA 59.960 34.615 0.00 0.00 41.71 2.69
4365 7232 6.991938 TCTTTCCGTTGGAATTGATTTTGAT 58.008 32.000 0.00 0.00 41.71 2.57
4366 7233 7.441017 TCTTTCCGTTGGAATTGATTTTGATT 58.559 30.769 0.00 0.00 41.71 2.57
4367 7234 8.580720 TCTTTCCGTTGGAATTGATTTTGATTA 58.419 29.630 0.00 0.00 41.71 1.75
4368 7235 8.755696 TTTCCGTTGGAATTGATTTTGATTAG 57.244 30.769 0.00 0.00 41.71 1.73
4369 7236 6.329496 TCCGTTGGAATTGATTTTGATTAGC 58.671 36.000 0.00 0.00 0.00 3.09
4370 7237 6.071672 TCCGTTGGAATTGATTTTGATTAGCA 60.072 34.615 0.00 0.00 0.00 3.49
4371 7238 6.034898 CCGTTGGAATTGATTTTGATTAGCAC 59.965 38.462 0.00 0.00 0.00 4.40
4372 7239 6.585702 CGTTGGAATTGATTTTGATTAGCACA 59.414 34.615 0.00 0.00 0.00 4.57
4373 7240 7.276218 CGTTGGAATTGATTTTGATTAGCACAT 59.724 33.333 0.00 0.00 0.00 3.21
4374 7241 8.598075 GTTGGAATTGATTTTGATTAGCACATC 58.402 33.333 0.00 0.00 0.00 3.06
4375 7242 8.070034 TGGAATTGATTTTGATTAGCACATCT 57.930 30.769 0.00 0.00 0.00 2.90
4376 7243 8.533657 TGGAATTGATTTTGATTAGCACATCTT 58.466 29.630 0.00 0.00 0.00 2.40
4377 7244 9.028185 GGAATTGATTTTGATTAGCACATCTTC 57.972 33.333 0.00 0.00 0.00 2.87
4378 7245 9.798994 GAATTGATTTTGATTAGCACATCTTCT 57.201 29.630 0.00 0.00 0.00 2.85
4382 7249 9.842775 TGATTTTGATTAGCACATCTTCTATCT 57.157 29.630 0.00 0.00 0.00 1.98
4393 7260 7.812191 AGCACATCTTCTATCTCTATTTAAGCG 59.188 37.037 0.00 0.00 0.00 4.68
4394 7261 7.062839 GCACATCTTCTATCTCTATTTAAGCGG 59.937 40.741 0.00 0.00 0.00 5.52
4395 7262 8.085296 CACATCTTCTATCTCTATTTAAGCGGT 58.915 37.037 0.00 0.00 0.00 5.68
4396 7263 8.643324 ACATCTTCTATCTCTATTTAAGCGGTT 58.357 33.333 4.76 4.76 0.00 4.44
4397 7264 9.482627 CATCTTCTATCTCTATTTAAGCGGTTT 57.517 33.333 4.64 0.00 0.00 3.27
4398 7265 9.699703 ATCTTCTATCTCTATTTAAGCGGTTTC 57.300 33.333 4.64 0.00 0.00 2.78
4399 7266 8.915036 TCTTCTATCTCTATTTAAGCGGTTTCT 58.085 33.333 4.64 0.00 0.00 2.52
4400 7267 9.187455 CTTCTATCTCTATTTAAGCGGTTTCTC 57.813 37.037 4.64 0.00 0.00 2.87
4401 7268 8.234136 TCTATCTCTATTTAAGCGGTTTCTCA 57.766 34.615 4.64 0.00 0.00 3.27
4402 7269 8.692710 TCTATCTCTATTTAAGCGGTTTCTCAA 58.307 33.333 4.64 0.00 0.00 3.02
4403 7270 6.963049 TCTCTATTTAAGCGGTTTCTCAAC 57.037 37.500 4.64 0.00 0.00 3.18
4404 7271 6.698380 TCTCTATTTAAGCGGTTTCTCAACT 58.302 36.000 4.64 0.00 32.90 3.16
4405 7272 7.159372 TCTCTATTTAAGCGGTTTCTCAACTT 58.841 34.615 4.64 0.00 32.90 2.66
4406 7273 7.660208 TCTCTATTTAAGCGGTTTCTCAACTTT 59.340 33.333 4.64 0.00 32.90 2.66
4407 7274 8.836268 TCTATTTAAGCGGTTTCTCAACTTTA 57.164 30.769 4.64 0.00 32.90 1.85
4408 7275 9.444600 TCTATTTAAGCGGTTTCTCAACTTTAT 57.555 29.630 4.64 0.00 32.90 1.40
4409 7276 9.490663 CTATTTAAGCGGTTTCTCAACTTTATG 57.509 33.333 4.64 0.00 32.90 1.90
4410 7277 4.766404 AAGCGGTTTCTCAACTTTATGG 57.234 40.909 0.00 0.00 32.90 2.74
4411 7278 4.015872 AGCGGTTTCTCAACTTTATGGA 57.984 40.909 0.00 0.00 32.90 3.41
4412 7279 4.394729 AGCGGTTTCTCAACTTTATGGAA 58.605 39.130 0.00 0.00 32.90 3.53
4413 7280 4.455877 AGCGGTTTCTCAACTTTATGGAAG 59.544 41.667 0.00 0.00 41.32 3.46
4431 7298 9.559732 TTATGGAAGTGTGATCATTTACTATGG 57.440 33.333 0.00 0.00 0.00 2.74
4432 7299 7.194112 TGGAAGTGTGATCATTTACTATGGA 57.806 36.000 0.00 0.00 0.00 3.41
4433 7300 7.629157 TGGAAGTGTGATCATTTACTATGGAA 58.371 34.615 0.00 0.00 0.00 3.53
4434 7301 8.274322 TGGAAGTGTGATCATTTACTATGGAAT 58.726 33.333 0.00 0.00 0.00 3.01
4435 7302 9.125026 GGAAGTGTGATCATTTACTATGGAATT 57.875 33.333 0.00 0.00 0.00 2.17
4437 7304 9.685276 AAGTGTGATCATTTACTATGGAATTCA 57.315 29.630 7.93 0.00 0.00 2.57
4438 7305 9.857656 AGTGTGATCATTTACTATGGAATTCAT 57.142 29.630 7.93 2.02 39.78 2.57
4441 7308 9.817365 GTGATCATTTACTATGGAATTCATTCG 57.183 33.333 7.93 0.00 37.67 3.34
4442 7309 9.559732 TGATCATTTACTATGGAATTCATTCGT 57.440 29.630 7.93 1.73 37.67 3.85
4445 7312 9.389755 TCATTTACTATGGAATTCATTCGTTCA 57.610 29.630 7.93 0.00 37.67 3.18
4449 7316 9.613428 TTACTATGGAATTCATTCGTTCATTCT 57.387 29.630 7.93 0.00 37.67 2.40
4450 7317 8.511604 ACTATGGAATTCATTCGTTCATTCTT 57.488 30.769 7.93 0.00 37.67 2.52
4451 7318 8.400947 ACTATGGAATTCATTCGTTCATTCTTG 58.599 33.333 7.93 0.00 37.67 3.02
4452 7319 6.573664 TGGAATTCATTCGTTCATTCTTGT 57.426 33.333 7.93 0.00 37.67 3.16
4453 7320 6.980593 TGGAATTCATTCGTTCATTCTTGTT 58.019 32.000 7.93 0.00 37.67 2.83
4454 7321 7.083858 TGGAATTCATTCGTTCATTCTTGTTC 58.916 34.615 7.93 0.00 37.67 3.18
4455 7322 6.249260 GGAATTCATTCGTTCATTCTTGTTCG 59.751 38.462 7.93 0.00 37.67 3.95
4456 7323 5.915812 TTCATTCGTTCATTCTTGTTCGA 57.084 34.783 0.00 0.00 0.00 3.71
4457 7324 5.915812 TCATTCGTTCATTCTTGTTCGAA 57.084 34.783 0.00 0.00 40.23 3.71
4458 7325 6.480524 TCATTCGTTCATTCTTGTTCGAAT 57.519 33.333 0.00 0.00 43.09 3.34
4460 7327 5.666969 TTCGTTCATTCTTGTTCGAATGT 57.333 34.783 0.00 0.00 46.46 2.71
4461 7328 5.666969 TCGTTCATTCTTGTTCGAATGTT 57.333 34.783 0.00 0.00 46.46 2.71
4462 7329 6.772770 TCGTTCATTCTTGTTCGAATGTTA 57.227 33.333 0.00 1.89 46.46 2.41
4463 7330 7.179927 TCGTTCATTCTTGTTCGAATGTTAA 57.820 32.000 0.00 0.00 46.46 2.01
4464 7331 7.287950 TCGTTCATTCTTGTTCGAATGTTAAG 58.712 34.615 0.00 4.76 46.46 1.85
4465 7332 6.519761 CGTTCATTCTTGTTCGAATGTTAAGG 59.480 38.462 0.00 0.00 46.46 2.69
4466 7333 5.938322 TCATTCTTGTTCGAATGTTAAGGC 58.062 37.500 0.00 0.00 46.46 4.35
4467 7334 5.705441 TCATTCTTGTTCGAATGTTAAGGCT 59.295 36.000 0.00 0.00 46.46 4.58
4468 7335 6.876789 TCATTCTTGTTCGAATGTTAAGGCTA 59.123 34.615 0.00 0.00 46.46 3.93
4469 7336 7.552687 TCATTCTTGTTCGAATGTTAAGGCTAT 59.447 33.333 0.00 0.00 46.46 2.97
4470 7337 8.826710 CATTCTTGTTCGAATGTTAAGGCTATA 58.173 33.333 0.00 0.00 43.21 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.391528 CTCACGGACATGCATGGTCA 60.392 55.000 29.41 4.83 37.00 4.02
74 75 8.519526 GTCCACATCCTTTATTTTAACATGACA 58.480 33.333 0.00 0.00 0.00 3.58
76 77 7.893302 AGGTCCACATCCTTTATTTTAACATGA 59.107 33.333 0.00 0.00 30.18 3.07
77 78 8.066612 AGGTCCACATCCTTTATTTTAACATG 57.933 34.615 0.00 0.00 30.18 3.21
155 157 3.579709 AGAGTCTATGTGTTGCAACGAG 58.420 45.455 23.79 17.16 0.00 4.18
156 158 3.660501 AGAGTCTATGTGTTGCAACGA 57.339 42.857 23.79 13.78 0.00 3.85
158 160 4.676924 GCAAAAGAGTCTATGTGTTGCAAC 59.323 41.667 22.83 22.83 39.65 4.17
166 168 9.384764 GGATTTTACTAGCAAAAGAGTCTATGT 57.615 33.333 6.97 0.00 31.29 2.29
194 196 9.268268 CGTGATTTACCTGCCTAAATCTATTTA 57.732 33.333 14.76 0.00 41.12 1.40
199 201 4.163458 TCCGTGATTTACCTGCCTAAATCT 59.837 41.667 14.76 0.00 41.12 2.40
200 202 4.448210 TCCGTGATTTACCTGCCTAAATC 58.552 43.478 9.90 9.90 41.00 2.17
224 226 7.309177 TGTGTAAATCAATGTTACCAAATCCG 58.691 34.615 0.00 0.00 31.63 4.18
286 288 6.875972 ATTTGTGAACAGAGGGAGTACTAT 57.124 37.500 0.00 0.00 0.00 2.12
299 2927 7.442364 TCAAAAACACCTCAAAATTTGTGAACA 59.558 29.630 11.98 0.00 27.77 3.18
378 3006 8.059461 TCCCCTCATATATAGATGTACGTTCAT 58.941 37.037 7.45 7.45 0.00 2.57
384 3012 7.661536 TTGCTCCCCTCATATATAGATGTAC 57.338 40.000 7.21 0.00 0.00 2.90
415 3046 5.146460 CCGTGAGATTTGTAATGTTGTGTG 58.854 41.667 0.00 0.00 0.00 3.82
433 3064 4.891168 TGTAGACTAGATAATTGCCCGTGA 59.109 41.667 0.00 0.00 0.00 4.35
536 3207 2.801342 GCTAAGATGCAGCTAAGCTCGT 60.801 50.000 4.15 0.00 36.40 4.18
585 3256 5.285798 TCCGCTTTTATTTGGAAACTACG 57.714 39.130 0.00 0.00 0.00 3.51
586 3257 7.982224 ACTATCCGCTTTTATTTGGAAACTAC 58.018 34.615 0.00 0.00 33.48 2.73
617 3392 1.204704 TGTTATCTGGGAGCACGTGAG 59.795 52.381 22.23 7.36 0.00 3.51
651 3426 2.016318 CAAGATATTTGCCTGGCACGA 58.984 47.619 23.30 13.78 38.71 4.35
660 3435 2.945447 TGCCAGTGCAAGATATTTGC 57.055 45.000 12.76 12.76 46.66 3.68
700 3475 2.355310 CGGTTTGGGCCTATGACAAGTA 60.355 50.000 4.53 0.00 0.00 2.24
739 3514 0.389426 GAGCACCGGTTCACACGTAT 60.389 55.000 2.97 0.00 0.00 3.06
742 3517 3.403057 CGAGCACCGGTTCACACG 61.403 66.667 2.97 4.21 33.91 4.49
795 3574 3.503363 GGCGCTGATGCTGTGGTC 61.503 66.667 7.64 0.00 36.97 4.02
838 3617 5.145059 CGAGTATATACACACACGATGGAC 58.855 45.833 15.18 0.00 0.00 4.02
863 3642 1.269444 CGACTTCGCCGGAATCGATC 61.269 60.000 5.05 0.00 36.33 3.69
864 3643 1.299165 CGACTTCGCCGGAATCGAT 60.299 57.895 5.05 0.00 36.33 3.59
865 3644 1.721664 ATCGACTTCGCCGGAATCGA 61.722 55.000 5.05 0.00 41.61 3.59
866 3645 1.269444 GATCGACTTCGCCGGAATCG 61.269 60.000 5.05 6.26 39.60 3.34
867 3646 0.940047 GGATCGACTTCGCCGGAATC 60.940 60.000 5.05 0.00 39.60 2.52
868 3647 1.067582 GGATCGACTTCGCCGGAAT 59.932 57.895 5.05 0.00 39.60 3.01
869 3648 2.493030 GGATCGACTTCGCCGGAA 59.507 61.111 5.05 0.00 39.60 4.30
870 3649 3.524606 GGGATCGACTTCGCCGGA 61.525 66.667 5.05 0.00 39.60 5.14
871 3650 4.587189 GGGGATCGACTTCGCCGG 62.587 72.222 6.39 0.00 38.73 6.13
873 3652 2.202892 GTGGGGATCGACTTCGCC 60.203 66.667 13.68 13.68 46.19 5.54
874 3653 0.806492 GAAGTGGGGATCGACTTCGC 60.806 60.000 12.49 0.00 44.52 4.70
875 3654 3.347411 GAAGTGGGGATCGACTTCG 57.653 57.895 12.49 0.00 44.52 3.79
877 3656 1.555533 GAAGGAAGTGGGGATCGACTT 59.444 52.381 3.72 3.72 43.13 3.01
878 3657 1.196012 GAAGGAAGTGGGGATCGACT 58.804 55.000 0.00 0.00 33.26 4.18
879 3658 1.137282 GAGAAGGAAGTGGGGATCGAC 59.863 57.143 0.00 0.00 0.00 4.20
880 3659 1.486211 GAGAAGGAAGTGGGGATCGA 58.514 55.000 0.00 0.00 0.00 3.59
881 3660 0.103208 CGAGAAGGAAGTGGGGATCG 59.897 60.000 0.00 0.00 0.00 3.69
902 3681 8.942338 ACTTGTTTTATTTTTGGAGGAGAAAC 57.058 30.769 0.00 0.00 0.00 2.78
1162 3944 2.233431 GCTAGATCATCTGCAGGTAGGG 59.767 54.545 15.13 0.00 0.00 3.53
1184 3966 5.523552 TGGAAACATGCATATTCTAGACACG 59.476 40.000 18.57 0.00 33.40 4.49
1204 3990 0.038435 CATGGCAAACACGCATGGAA 60.038 50.000 0.00 0.00 0.00 3.53
1205 3991 1.585517 CATGGCAAACACGCATGGA 59.414 52.632 0.00 0.00 0.00 3.41
1206 3992 2.095847 GCATGGCAAACACGCATGG 61.096 57.895 0.00 0.00 38.37 3.66
1207 3993 1.373121 TGCATGGCAAACACGCATG 60.373 52.632 0.00 0.00 44.30 4.06
1208 3994 3.049470 TGCATGGCAAACACGCAT 58.951 50.000 0.00 0.00 44.30 4.73
1210 3996 2.732670 GCATGCATGGCAAACACGC 61.733 57.895 27.34 6.46 43.62 5.34
1211 3997 1.373121 TGCATGCATGGCAAACACG 60.373 52.632 27.34 0.00 43.62 4.49
1212 3998 1.293267 GGTGCATGCATGGCAAACAC 61.293 55.000 25.64 23.11 43.62 3.32
1213 3999 1.004799 GGTGCATGCATGGCAAACA 60.005 52.632 25.64 13.75 43.62 2.83
1214 4000 0.320946 AAGGTGCATGCATGGCAAAC 60.321 50.000 25.64 19.09 43.62 2.93
1215 4001 0.397187 AAAGGTGCATGCATGGCAAA 59.603 45.000 25.64 0.00 43.62 3.68
1216 4002 0.037139 GAAAGGTGCATGCATGGCAA 60.037 50.000 25.64 8.51 43.62 4.52
1217 4003 0.901114 AGAAAGGTGCATGCATGGCA 60.901 50.000 25.64 21.38 44.86 4.92
1218 4004 1.105457 TAGAAAGGTGCATGCATGGC 58.895 50.000 25.64 19.18 0.00 4.40
1330 4120 8.153550 AGTCTTCATGTAAGATGAAAAGAGTGT 58.846 33.333 9.75 0.00 45.84 3.55
1383 4177 4.863131 ACGTACTCCATGAAATCGAGTTTC 59.137 41.667 0.00 6.48 45.21 2.78
1708 4502 3.934391 GACGAGGCCGAACCCACAG 62.934 68.421 0.00 0.00 40.58 3.66
1789 4583 1.066143 GGAATCGAGCAAACCTCTGGA 60.066 52.381 0.00 0.00 38.49 3.86
1792 4586 2.616510 CCAAGGAATCGAGCAAACCTCT 60.617 50.000 0.00 0.00 38.49 3.69
1798 4592 3.973206 TTACTCCAAGGAATCGAGCAA 57.027 42.857 0.00 0.00 0.00 3.91
1809 4603 5.235186 CAGCCGTAAGATCAATTACTCCAAG 59.765 44.000 0.00 0.00 43.02 3.61
1812 4606 4.058817 CCAGCCGTAAGATCAATTACTCC 58.941 47.826 0.00 0.00 43.02 3.85
1814 4608 5.552870 ATCCAGCCGTAAGATCAATTACT 57.447 39.130 0.00 0.00 43.02 2.24
1919 4752 5.770162 GCACAGCCCAAAATAGGAATATACT 59.230 40.000 0.00 0.00 0.00 2.12
1920 4753 5.770162 AGCACAGCCCAAAATAGGAATATAC 59.230 40.000 0.00 0.00 0.00 1.47
1921 4754 5.952387 AGCACAGCCCAAAATAGGAATATA 58.048 37.500 0.00 0.00 0.00 0.86
1922 4755 4.808042 AGCACAGCCCAAAATAGGAATAT 58.192 39.130 0.00 0.00 0.00 1.28
1923 4756 4.249638 AGCACAGCCCAAAATAGGAATA 57.750 40.909 0.00 0.00 0.00 1.75
2011 4851 5.320488 TCCTAGGATCCAGTTCGATCTAA 57.680 43.478 15.82 0.00 38.97 2.10
2013 4853 3.885976 TCCTAGGATCCAGTTCGATCT 57.114 47.619 15.82 0.00 38.97 2.75
2052 4892 0.763604 TGTTTCCTCCACCCCACGTA 60.764 55.000 0.00 0.00 0.00 3.57
2053 4893 1.637724 TTGTTTCCTCCACCCCACGT 61.638 55.000 0.00 0.00 0.00 4.49
2054 4894 0.466555 TTTGTTTCCTCCACCCCACG 60.467 55.000 0.00 0.00 0.00 4.94
2056 4896 2.719705 AGTATTTGTTTCCTCCACCCCA 59.280 45.455 0.00 0.00 0.00 4.96
2059 4899 5.045797 AGGAGTAGTATTTGTTTCCTCCACC 60.046 44.000 0.00 0.00 39.55 4.61
2079 4924 7.930325 TCTGCAATCATCTTTGAATAGTAGGAG 59.070 37.037 0.00 0.00 34.96 3.69
2081 4926 7.930325 TCTCTGCAATCATCTTTGAATAGTAGG 59.070 37.037 0.00 0.00 34.96 3.18
2136 4983 2.509548 CTCCCTCTCTCTCTCTCAAGGA 59.490 54.545 0.00 0.00 0.00 3.36
2151 4998 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2152 4999 0.330431 ATCTCCCTCTCCCTCTCCCT 60.330 60.000 0.00 0.00 0.00 4.20
2153 5000 0.565674 AATCTCCCTCTCCCTCTCCC 59.434 60.000 0.00 0.00 0.00 4.30
2154 5001 3.621682 TTAATCTCCCTCTCCCTCTCC 57.378 52.381 0.00 0.00 0.00 3.71
2155 5002 4.746466 TGATTAATCTCCCTCTCCCTCTC 58.254 47.826 16.24 0.00 0.00 3.20
2156 5003 4.841813 TGATTAATCTCCCTCTCCCTCT 57.158 45.455 16.24 0.00 0.00 3.69
2157 5004 5.545723 TCAATGATTAATCTCCCTCTCCCTC 59.454 44.000 16.24 0.00 0.00 4.30
2158 5005 5.480710 TCAATGATTAATCTCCCTCTCCCT 58.519 41.667 16.24 0.00 0.00 4.20
2159 5006 5.545723 TCTCAATGATTAATCTCCCTCTCCC 59.454 44.000 16.24 0.00 0.00 4.30
2160 5007 6.463360 GTCTCAATGATTAATCTCCCTCTCC 58.537 44.000 16.24 0.00 0.00 3.71
2161 5008 6.015856 TCGTCTCAATGATTAATCTCCCTCTC 60.016 42.308 16.24 2.76 0.00 3.20
2162 5009 5.835819 TCGTCTCAATGATTAATCTCCCTCT 59.164 40.000 16.24 0.00 0.00 3.69
2163 5010 5.923684 GTCGTCTCAATGATTAATCTCCCTC 59.076 44.000 16.24 1.56 0.00 4.30
2164 5011 5.600484 AGTCGTCTCAATGATTAATCTCCCT 59.400 40.000 16.24 0.00 0.00 4.20
2165 5012 5.848406 AGTCGTCTCAATGATTAATCTCCC 58.152 41.667 16.24 0.00 0.00 4.30
2166 5013 7.778470 AAAGTCGTCTCAATGATTAATCTCC 57.222 36.000 16.24 0.00 0.00 3.71
2273 5121 9.504710 GCGTTACATCAGATATAAGTTCGATAT 57.495 33.333 0.00 0.00 0.00 1.63
2274 5122 8.508875 TGCGTTACATCAGATATAAGTTCGATA 58.491 33.333 0.00 0.00 0.00 2.92
2275 5123 7.368059 TGCGTTACATCAGATATAAGTTCGAT 58.632 34.615 0.00 0.00 0.00 3.59
2276 5124 6.731164 TGCGTTACATCAGATATAAGTTCGA 58.269 36.000 0.00 0.00 0.00 3.71
2277 5125 6.856426 TCTGCGTTACATCAGATATAAGTTCG 59.144 38.462 1.15 0.00 34.69 3.95
2278 5126 7.863375 ACTCTGCGTTACATCAGATATAAGTTC 59.137 37.037 5.11 0.00 38.50 3.01
2279 5127 7.717568 ACTCTGCGTTACATCAGATATAAGTT 58.282 34.615 5.11 0.00 38.50 2.66
2280 5128 7.278461 ACTCTGCGTTACATCAGATATAAGT 57.722 36.000 5.11 0.00 38.50 2.24
2281 5129 9.847706 ATAACTCTGCGTTACATCAGATATAAG 57.152 33.333 5.11 0.00 40.67 1.73
2379 5228 6.692486 TCCTTTCATCTACTCTTCTTGACAC 58.308 40.000 0.00 0.00 0.00 3.67
2387 5236 5.190726 CCCTCCTTTCCTTTCATCTACTCTT 59.809 44.000 0.00 0.00 0.00 2.85
2467 5316 0.472925 TGGATATGCCCCGCTCCTTA 60.473 55.000 0.00 0.00 34.97 2.69
2474 5323 0.322816 CAAGGGATGGATATGCCCCG 60.323 60.000 3.43 0.00 45.29 5.73
2475 5324 0.613012 GCAAGGGATGGATATGCCCC 60.613 60.000 0.88 0.88 45.29 5.80
2476 5325 0.407139 AGCAAGGGATGGATATGCCC 59.593 55.000 0.00 0.00 45.29 5.36
2477 5326 2.299326 AAGCAAGGGATGGATATGCC 57.701 50.000 0.00 0.00 44.57 4.40
2478 5327 2.227388 CGAAAGCAAGGGATGGATATGC 59.773 50.000 0.00 0.00 37.28 3.14
2479 5328 3.743521 TCGAAAGCAAGGGATGGATATG 58.256 45.455 0.00 0.00 0.00 1.78
2480 5329 4.103153 TCTTCGAAAGCAAGGGATGGATAT 59.897 41.667 0.00 0.00 0.00 1.63
2481 5330 3.454447 TCTTCGAAAGCAAGGGATGGATA 59.546 43.478 0.00 0.00 0.00 2.59
2485 5334 3.733077 GCATTCTTCGAAAGCAAGGGATG 60.733 47.826 0.00 0.00 0.00 3.51
2497 5346 3.470709 GAATCATCCAGGCATTCTTCGA 58.529 45.455 0.00 0.00 0.00 3.71
2501 5350 2.809665 GCTCGAATCATCCAGGCATTCT 60.810 50.000 0.00 0.00 0.00 2.40
2515 5364 2.434884 CCACGCCTGTGCTCGAAT 60.435 61.111 0.00 0.00 45.04 3.34
2534 5383 1.372087 CTTGAGCGGATGACAAGGCC 61.372 60.000 0.00 0.00 37.80 5.19
2577 5426 2.883888 GCCCCAGTTGGATGTGTAATGT 60.884 50.000 0.00 0.00 37.39 2.71
2583 5432 0.831288 TTTGGCCCCAGTTGGATGTG 60.831 55.000 0.00 0.00 37.39 3.21
2686 5540 8.786826 TTCACATGGAGTAGGTAATTTGTTAG 57.213 34.615 0.00 0.00 0.00 2.34
2715 5569 9.771534 GCTAGATCTTTATATGACCAGTCTTTT 57.228 33.333 0.00 0.00 0.00 2.27
2716 5570 9.153479 AGCTAGATCTTTATATGACCAGTCTTT 57.847 33.333 0.00 0.00 0.00 2.52
2717 5571 8.719645 AGCTAGATCTTTATATGACCAGTCTT 57.280 34.615 0.00 0.00 0.00 3.01
2718 5572 9.461312 CTAGCTAGATCTTTATATGACCAGTCT 57.539 37.037 16.15 0.00 0.00 3.24
2719 5573 9.456147 TCTAGCTAGATCTTTATATGACCAGTC 57.544 37.037 19.72 0.00 0.00 3.51
2749 5603 4.521130 TGAGAGCTAAAATGACACTCGT 57.479 40.909 0.00 0.00 32.60 4.18
2750 5604 4.269603 CCATGAGAGCTAAAATGACACTCG 59.730 45.833 0.00 0.00 32.60 4.18
2800 5654 8.495949 CATGTATTGACCCATCGAAATTACTAC 58.504 37.037 0.00 0.00 0.00 2.73
2801 5655 7.172532 GCATGTATTGACCCATCGAAATTACTA 59.827 37.037 0.00 0.00 0.00 1.82
2835 5689 3.395941 AGGCATATAAAAGAGGGGGTGAG 59.604 47.826 0.00 0.00 0.00 3.51
2842 5696 2.549754 CGTGGCAGGCATATAAAAGAGG 59.450 50.000 0.00 0.00 0.00 3.69
2873 5727 2.676471 AGAATGCCCGTGTTGCCC 60.676 61.111 0.00 0.00 0.00 5.36
2888 5742 1.439228 GGCGATGTAGCTGAGCAGA 59.561 57.895 7.39 0.00 37.29 4.26
2927 5781 2.029743 CCAGTTGACGTTGTTGGGG 58.970 57.895 0.00 0.00 0.00 4.96
3136 5990 2.346541 GCCTGCTTGGAGCTTTCCC 61.347 63.158 1.29 0.00 42.97 3.97
3350 6204 4.980805 GTGGCACCGAGAACCGCA 62.981 66.667 6.29 0.00 36.84 5.69
3706 6561 1.125093 TGAACGTCATCCCCACCACT 61.125 55.000 0.00 0.00 0.00 4.00
3763 6618 4.195308 GCACCCGCGAAGATGTAA 57.805 55.556 8.23 0.00 0.00 2.41
3887 6743 4.694982 ACATTATTGATCACTGCGTTGTCA 59.305 37.500 0.00 0.00 0.00 3.58
3891 6747 3.485711 CGCACATTATTGATCACTGCGTT 60.486 43.478 14.26 0.00 40.77 4.84
4037 6894 6.254157 CAGCATCACATTGTATTTAGGTTTGC 59.746 38.462 0.00 0.00 0.00 3.68
4080 6938 6.313519 AGGGTTGATAGCAATCTTAGTTGA 57.686 37.500 3.65 0.00 35.43 3.18
4097 6955 7.223584 TGATACCACATCATTGTATAGGGTTG 58.776 38.462 0.00 0.00 32.41 3.77
4098 6956 7.387265 TGATACCACATCATTGTATAGGGTT 57.613 36.000 0.00 0.00 32.41 4.11
4117 6975 9.494271 TGAGAAGCTTAATACCATCAATGATAC 57.506 33.333 0.00 0.00 0.00 2.24
4173 7034 9.710900 ATTTCACTCGCTATTGATAATATCACA 57.289 29.630 1.88 0.00 39.39 3.58
4256 7119 6.129393 CGTGTTTATGGCTTAAATCGATCAG 58.871 40.000 18.61 0.00 34.74 2.90
4283 7146 9.646336 GTCGTGTTTTAGGCTGTATTTATAATG 57.354 33.333 0.00 0.00 0.00 1.90
4303 7170 5.400485 GTGACGTAAAGTTATCTTGTCGTGT 59.600 40.000 15.80 1.15 40.61 4.49
4304 7171 5.400188 TGTGACGTAAAGTTATCTTGTCGTG 59.600 40.000 15.80 0.00 40.61 4.35
4305 7172 5.522456 TGTGACGTAAAGTTATCTTGTCGT 58.478 37.500 12.71 12.71 41.90 4.34
4306 7173 5.628193 ACTGTGACGTAAAGTTATCTTGTCG 59.372 40.000 0.00 8.22 36.98 4.35
4307 7174 7.404139 AACTGTGACGTAAAGTTATCTTGTC 57.596 36.000 7.92 0.00 32.48 3.18
4308 7175 7.709613 AGAAACTGTGACGTAAAGTTATCTTGT 59.290 33.333 9.61 0.00 33.09 3.16
4309 7176 8.073355 AGAAACTGTGACGTAAAGTTATCTTG 57.927 34.615 9.61 0.00 33.09 3.02
4310 7177 8.548721 CAAGAAACTGTGACGTAAAGTTATCTT 58.451 33.333 17.37 17.37 34.87 2.40
4311 7178 7.924412 TCAAGAAACTGTGACGTAAAGTTATCT 59.076 33.333 9.61 10.89 33.09 1.98
4312 7179 8.068893 TCAAGAAACTGTGACGTAAAGTTATC 57.931 34.615 9.61 9.41 33.09 1.75
4313 7180 8.428186 TTCAAGAAACTGTGACGTAAAGTTAT 57.572 30.769 9.61 1.60 33.09 1.89
4314 7181 7.830940 TTCAAGAAACTGTGACGTAAAGTTA 57.169 32.000 9.61 0.00 33.09 2.24
4315 7182 6.730960 TTCAAGAAACTGTGACGTAAAGTT 57.269 33.333 4.61 4.61 35.70 2.66
4316 7183 6.540205 GTTTCAAGAAACTGTGACGTAAAGT 58.460 36.000 16.27 0.00 45.26 2.66
4329 7196 6.624204 TTCCAACGGAAAGAGTTTCAAGAAAC 60.624 38.462 15.89 15.89 43.22 2.78
4330 7197 4.944930 TCCAACGGAAAGAGTTTCAAGAAA 59.055 37.500 2.06 0.00 41.43 2.52
4331 7198 4.519213 TCCAACGGAAAGAGTTTCAAGAA 58.481 39.130 2.06 0.00 41.43 2.52
4332 7199 4.145365 TCCAACGGAAAGAGTTTCAAGA 57.855 40.909 2.06 0.00 41.43 3.02
4333 7200 4.893424 TTCCAACGGAAAGAGTTTCAAG 57.107 40.909 2.06 0.00 38.93 3.02
4334 7201 5.358442 TCAATTCCAACGGAAAGAGTTTCAA 59.642 36.000 0.00 0.00 45.41 2.69
4335 7202 4.884744 TCAATTCCAACGGAAAGAGTTTCA 59.115 37.500 0.00 0.00 45.41 2.69
4336 7203 5.432885 TCAATTCCAACGGAAAGAGTTTC 57.567 39.130 0.00 0.00 45.41 2.78
4337 7204 6.405278 AATCAATTCCAACGGAAAGAGTTT 57.595 33.333 0.00 0.00 45.41 2.66
4338 7205 6.405278 AAATCAATTCCAACGGAAAGAGTT 57.595 33.333 0.00 4.39 45.41 3.01
4339 7206 6.040391 TCAAAATCAATTCCAACGGAAAGAGT 59.960 34.615 0.00 0.00 45.41 3.24
4340 7207 6.446318 TCAAAATCAATTCCAACGGAAAGAG 58.554 36.000 0.00 0.00 45.41 2.85
4341 7208 6.398234 TCAAAATCAATTCCAACGGAAAGA 57.602 33.333 0.00 2.04 45.41 2.52
4342 7209 7.656707 AATCAAAATCAATTCCAACGGAAAG 57.343 32.000 0.00 0.00 45.41 2.62
4343 7210 7.330700 GCTAATCAAAATCAATTCCAACGGAAA 59.669 33.333 0.00 0.00 45.41 3.13
4344 7211 6.811170 GCTAATCAAAATCAATTCCAACGGAA 59.189 34.615 0.00 0.00 46.39 4.30
4345 7212 6.071672 TGCTAATCAAAATCAATTCCAACGGA 60.072 34.615 0.00 0.00 0.00 4.69
4346 7213 6.034898 GTGCTAATCAAAATCAATTCCAACGG 59.965 38.462 0.00 0.00 0.00 4.44
4347 7214 6.585702 TGTGCTAATCAAAATCAATTCCAACG 59.414 34.615 0.00 0.00 0.00 4.10
4348 7215 7.887996 TGTGCTAATCAAAATCAATTCCAAC 57.112 32.000 0.00 0.00 0.00 3.77
4349 7216 8.533657 AGATGTGCTAATCAAAATCAATTCCAA 58.466 29.630 2.67 0.00 0.00 3.53
4350 7217 8.070034 AGATGTGCTAATCAAAATCAATTCCA 57.930 30.769 2.67 0.00 0.00 3.53
4351 7218 8.937634 AAGATGTGCTAATCAAAATCAATTCC 57.062 30.769 2.67 0.00 0.00 3.01
4352 7219 9.798994 AGAAGATGTGCTAATCAAAATCAATTC 57.201 29.630 2.67 0.00 0.00 2.17
4356 7223 9.842775 AGATAGAAGATGTGCTAATCAAAATCA 57.157 29.630 2.67 0.00 0.00 2.57
4367 7234 7.812191 CGCTTAAATAGAGATAGAAGATGTGCT 59.188 37.037 0.00 0.00 0.00 4.40
4368 7235 7.062839 CCGCTTAAATAGAGATAGAAGATGTGC 59.937 40.741 0.00 0.00 0.00 4.57
4369 7236 8.085296 ACCGCTTAAATAGAGATAGAAGATGTG 58.915 37.037 0.00 0.00 0.00 3.21
4370 7237 8.184304 ACCGCTTAAATAGAGATAGAAGATGT 57.816 34.615 0.00 0.00 0.00 3.06
4371 7238 9.482627 AAACCGCTTAAATAGAGATAGAAGATG 57.517 33.333 0.00 0.00 0.00 2.90
4372 7239 9.699703 GAAACCGCTTAAATAGAGATAGAAGAT 57.300 33.333 0.00 0.00 0.00 2.40
4373 7240 8.915036 AGAAACCGCTTAAATAGAGATAGAAGA 58.085 33.333 0.00 0.00 0.00 2.87
4374 7241 9.187455 GAGAAACCGCTTAAATAGAGATAGAAG 57.813 37.037 0.00 0.00 0.00 2.85
4375 7242 8.692710 TGAGAAACCGCTTAAATAGAGATAGAA 58.307 33.333 0.00 0.00 0.00 2.10
4376 7243 8.234136 TGAGAAACCGCTTAAATAGAGATAGA 57.766 34.615 0.00 0.00 0.00 1.98
4377 7244 8.756864 GTTGAGAAACCGCTTAAATAGAGATAG 58.243 37.037 0.00 0.00 0.00 2.08
4378 7245 8.475639 AGTTGAGAAACCGCTTAAATAGAGATA 58.524 33.333 0.00 0.00 0.00 1.98
4379 7246 7.331791 AGTTGAGAAACCGCTTAAATAGAGAT 58.668 34.615 0.00 0.00 0.00 2.75
4380 7247 6.698380 AGTTGAGAAACCGCTTAAATAGAGA 58.302 36.000 0.00 0.00 0.00 3.10
4381 7248 6.969828 AGTTGAGAAACCGCTTAAATAGAG 57.030 37.500 0.00 0.00 0.00 2.43
4382 7249 7.739498 AAAGTTGAGAAACCGCTTAAATAGA 57.261 32.000 0.00 0.00 0.00 1.98
4383 7250 9.490663 CATAAAGTTGAGAAACCGCTTAAATAG 57.509 33.333 0.00 0.00 0.00 1.73
4384 7251 8.455682 CCATAAAGTTGAGAAACCGCTTAAATA 58.544 33.333 0.00 0.00 0.00 1.40
4385 7252 7.175990 TCCATAAAGTTGAGAAACCGCTTAAAT 59.824 33.333 0.00 0.00 0.00 1.40
4386 7253 6.487331 TCCATAAAGTTGAGAAACCGCTTAAA 59.513 34.615 0.00 0.00 0.00 1.52
4387 7254 5.998981 TCCATAAAGTTGAGAAACCGCTTAA 59.001 36.000 0.00 0.00 0.00 1.85
4388 7255 5.553123 TCCATAAAGTTGAGAAACCGCTTA 58.447 37.500 0.00 0.00 0.00 3.09
4389 7256 4.394729 TCCATAAAGTTGAGAAACCGCTT 58.605 39.130 0.00 0.00 0.00 4.68
4390 7257 4.015872 TCCATAAAGTTGAGAAACCGCT 57.984 40.909 0.00 0.00 0.00 5.52
4391 7258 4.215613 ACTTCCATAAAGTTGAGAAACCGC 59.784 41.667 0.00 0.00 46.26 5.68
4392 7259 5.238650 ACACTTCCATAAAGTTGAGAAACCG 59.761 40.000 0.00 0.00 46.26 4.44
4393 7260 6.262273 TCACACTTCCATAAAGTTGAGAAACC 59.738 38.462 0.00 0.00 46.26 3.27
4394 7261 7.259290 TCACACTTCCATAAAGTTGAGAAAC 57.741 36.000 0.00 0.00 46.26 2.78
4395 7262 7.719193 TGATCACACTTCCATAAAGTTGAGAAA 59.281 33.333 0.00 0.00 46.26 2.52
4396 7263 7.223584 TGATCACACTTCCATAAAGTTGAGAA 58.776 34.615 0.00 0.00 46.26 2.87
4397 7264 6.768483 TGATCACACTTCCATAAAGTTGAGA 58.232 36.000 0.00 0.00 46.26 3.27
4398 7265 7.621428 ATGATCACACTTCCATAAAGTTGAG 57.379 36.000 0.00 0.00 46.26 3.02
4399 7266 8.408043 AAATGATCACACTTCCATAAAGTTGA 57.592 30.769 0.00 0.00 46.26 3.18
4400 7267 9.559958 GTAAATGATCACACTTCCATAAAGTTG 57.440 33.333 0.00 0.00 46.26 3.16
4401 7268 9.520515 AGTAAATGATCACACTTCCATAAAGTT 57.479 29.630 0.00 0.00 46.26 2.66
4405 7272 9.559732 CCATAGTAAATGATCACACTTCCATAA 57.440 33.333 10.69 0.00 0.00 1.90
4406 7273 8.933653 TCCATAGTAAATGATCACACTTCCATA 58.066 33.333 10.69 0.00 0.00 2.74
4407 7274 7.805163 TCCATAGTAAATGATCACACTTCCAT 58.195 34.615 10.69 0.00 0.00 3.41
4408 7275 7.194112 TCCATAGTAAATGATCACACTTCCA 57.806 36.000 10.69 0.00 0.00 3.53
4409 7276 8.682936 ATTCCATAGTAAATGATCACACTTCC 57.317 34.615 10.69 0.00 0.00 3.46
4411 7278 9.685276 TGAATTCCATAGTAAATGATCACACTT 57.315 29.630 10.69 2.59 0.00 3.16
4412 7279 9.857656 ATGAATTCCATAGTAAATGATCACACT 57.142 29.630 0.00 4.60 32.72 3.55
4415 7282 9.817365 CGAATGAATTCCATAGTAAATGATCAC 57.183 33.333 0.00 0.00 34.45 3.06
4416 7283 9.559732 ACGAATGAATTCCATAGTAAATGATCA 57.440 29.630 0.00 0.00 34.45 2.92
4419 7286 9.389755 TGAACGAATGAATTCCATAGTAAATGA 57.610 29.630 2.27 0.00 34.45 2.57
4423 7290 9.613428 AGAATGAACGAATGAATTCCATAGTAA 57.387 29.630 2.27 0.00 34.45 2.24
4424 7291 9.613428 AAGAATGAACGAATGAATTCCATAGTA 57.387 29.630 2.27 0.00 34.45 1.82
4425 7292 8.400947 CAAGAATGAACGAATGAATTCCATAGT 58.599 33.333 2.27 0.00 34.45 2.12
4426 7293 8.400947 ACAAGAATGAACGAATGAATTCCATAG 58.599 33.333 2.27 0.00 34.45 2.23
4427 7294 8.279970 ACAAGAATGAACGAATGAATTCCATA 57.720 30.769 2.27 0.00 34.45 2.74
4428 7295 7.161773 ACAAGAATGAACGAATGAATTCCAT 57.838 32.000 2.27 0.00 36.99 3.41
4429 7296 6.573664 ACAAGAATGAACGAATGAATTCCA 57.426 33.333 2.27 0.00 33.28 3.53
4430 7297 6.249260 CGAACAAGAATGAACGAATGAATTCC 59.751 38.462 2.27 0.00 33.28 3.01
4431 7298 7.015289 TCGAACAAGAATGAACGAATGAATTC 58.985 34.615 0.00 0.00 35.89 2.17
4432 7299 6.898041 TCGAACAAGAATGAACGAATGAATT 58.102 32.000 0.00 0.00 35.89 2.17
4433 7300 6.480524 TCGAACAAGAATGAACGAATGAAT 57.519 33.333 0.00 0.00 35.89 2.57
4434 7301 5.915812 TCGAACAAGAATGAACGAATGAA 57.084 34.783 0.00 0.00 35.89 2.57
4435 7302 5.915812 TTCGAACAAGAATGAACGAATGA 57.084 34.783 0.00 0.00 39.94 2.57
4445 7312 7.865706 ATAGCCTTAACATTCGAACAAGAAT 57.134 32.000 0.00 0.00 41.12 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.