Multiple sequence alignment - TraesCS5A01G102500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G102500 chr5A 100.000 3627 0 0 1 3627 156223987 156227613 0.000000e+00 6698.0
1 TraesCS5A01G102500 chr5A 85.714 56 6 2 2710 2764 472437278 472437224 1.410000e-04 58.4
2 TraesCS5A01G102500 chr5A 86.538 52 5 2 2711 2761 607546651 607546701 5.060000e-04 56.5
3 TraesCS5A01G102500 chr5D 96.073 1986 57 9 671 2650 133536316 133538286 0.000000e+00 3216.0
4 TraesCS5A01G102500 chr5B 94.041 1913 68 22 822 2711 144815525 144817414 0.000000e+00 2859.0
5 TraesCS5A01G102500 chr5B 83.000 600 63 20 2903 3470 44273328 44273920 1.160000e-139 507.0
6 TraesCS5A01G102500 chr5B 82.392 602 69 16 2903 3472 257521368 257521964 1.170000e-134 490.0
7 TraesCS5A01G102500 chr5B 94.000 150 9 0 671 820 144814208 144814357 1.010000e-55 228.0
8 TraesCS5A01G102500 chr5B 93.333 75 4 1 3470 3544 144818915 144818988 3.830000e-20 110.0
9 TraesCS5A01G102500 chr2D 86.127 692 71 12 1 672 356051527 356052213 0.000000e+00 723.0
10 TraesCS5A01G102500 chr2D 86.120 317 43 1 216 531 562213553 562213237 1.250000e-89 340.0
11 TraesCS5A01G102500 chr2D 87.342 158 20 0 3320 3477 633612018 633611861 8.000000e-42 182.0
12 TraesCS5A01G102500 chr1A 85.489 696 74 9 3 671 290413024 290412329 0.000000e+00 701.0
13 TraesCS5A01G102500 chr1A 95.000 40 1 1 2700 2738 11232462 11232423 1.090000e-05 62.1
14 TraesCS5A01G102500 chr1A 87.037 54 3 4 2710 2761 8267625 8267676 1.410000e-04 58.4
15 TraesCS5A01G102500 chr3B 85.079 697 74 13 1 672 450264137 450264828 0.000000e+00 684.0
16 TraesCS5A01G102500 chr3B 82.363 601 67 18 2903 3470 92567473 92568067 1.510000e-133 486.0
17 TraesCS5A01G102500 chr3B 82.682 537 89 3 1 534 187824309 187823774 1.180000e-129 473.0
18 TraesCS5A01G102500 chr3B 91.016 256 22 1 273 527 228096823 228096568 9.640000e-91 344.0
19 TraesCS5A01G102500 chr7D 84.087 597 60 17 2903 3469 180803248 180803839 8.860000e-151 544.0
20 TraesCS5A01G102500 chr7D 80.801 599 62 22 2903 3469 241380951 241380374 1.560000e-113 420.0
21 TraesCS5A01G102500 chr6D 83.694 601 59 18 2903 3469 151930795 151930200 6.900000e-147 531.0
22 TraesCS5A01G102500 chr6D 82.890 526 85 4 1 522 271015002 271015526 5.480000e-128 468.0
23 TraesCS5A01G102500 chr6D 88.732 71 7 1 3532 3602 59784501 59784432 6.450000e-13 86.1
24 TraesCS5A01G102500 chr4B 82.935 586 71 20 2904 3469 382112124 382112700 5.410000e-138 501.0
25 TraesCS5A01G102500 chr4B 83.436 489 53 18 3009 3478 131438907 131438428 2.590000e-116 429.0
26 TraesCS5A01G102500 chr4B 85.316 395 49 4 1 388 180997314 180996922 2.030000e-107 399.0
27 TraesCS5A01G102500 chr3D 82.747 597 69 17 2903 3469 453102964 453103556 5.410000e-138 501.0
28 TraesCS5A01G102500 chr3D 79.564 597 71 26 2903 3469 451993735 451993160 2.640000e-101 379.0
29 TraesCS5A01G102500 chr2B 82.776 598 65 18 2903 3469 38253187 38252597 1.940000e-137 499.0
30 TraesCS5A01G102500 chr2A 82.558 602 68 25 2903 3473 718249227 718248632 2.520000e-136 496.0
31 TraesCS5A01G102500 chr2A 84.337 83 10 3 2711 2792 233195395 233195315 1.080000e-10 78.7
32 TraesCS5A01G102500 chr2A 87.692 65 8 0 2711 2775 35396393 35396329 3.880000e-10 76.8
33 TraesCS5A01G102500 chr2A 83.929 56 7 2 2711 2765 724028116 724028062 7.000000e-03 52.8
34 TraesCS5A01G102500 chr4D 82.155 594 70 16 2903 3469 346443075 346442491 9.110000e-131 477.0
35 TraesCS5A01G102500 chr4D 77.609 594 71 28 2902 3467 404842991 404842432 1.640000e-78 303.0
36 TraesCS5A01G102500 chr7A 81.681 595 72 17 2903 3466 148515008 148515596 9.180000e-126 460.0
37 TraesCS5A01G102500 chr7A 80.840 595 64 17 2903 3465 16728966 16728390 4.330000e-114 422.0
38 TraesCS5A01G102500 chr6B 80.112 538 96 7 1 534 16536625 16536095 1.220000e-104 390.0
39 TraesCS5A01G102500 chr1B 79.407 607 69 30 2903 3470 669767147 669766558 9.510000e-101 377.0
40 TraesCS5A01G102500 chr4A 92.188 64 5 0 2709 2772 439005792 439005729 1.390000e-14 91.6
41 TraesCS5A01G102500 chr3A 90.476 63 6 0 2710 2772 304190619 304190681 2.320000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G102500 chr5A 156223987 156227613 3626 False 6698.000000 6698 100.000000 1 3627 1 chr5A.!!$F1 3626
1 TraesCS5A01G102500 chr5D 133536316 133538286 1970 False 3216.000000 3216 96.073000 671 2650 1 chr5D.!!$F1 1979
2 TraesCS5A01G102500 chr5B 144814208 144818988 4780 False 1065.666667 2859 93.791333 671 3544 3 chr5B.!!$F3 2873
3 TraesCS5A01G102500 chr5B 44273328 44273920 592 False 507.000000 507 83.000000 2903 3470 1 chr5B.!!$F1 567
4 TraesCS5A01G102500 chr5B 257521368 257521964 596 False 490.000000 490 82.392000 2903 3472 1 chr5B.!!$F2 569
5 TraesCS5A01G102500 chr2D 356051527 356052213 686 False 723.000000 723 86.127000 1 672 1 chr2D.!!$F1 671
6 TraesCS5A01G102500 chr1A 290412329 290413024 695 True 701.000000 701 85.489000 3 671 1 chr1A.!!$R2 668
7 TraesCS5A01G102500 chr3B 450264137 450264828 691 False 684.000000 684 85.079000 1 672 1 chr3B.!!$F2 671
8 TraesCS5A01G102500 chr3B 92567473 92568067 594 False 486.000000 486 82.363000 2903 3470 1 chr3B.!!$F1 567
9 TraesCS5A01G102500 chr3B 187823774 187824309 535 True 473.000000 473 82.682000 1 534 1 chr3B.!!$R1 533
10 TraesCS5A01G102500 chr7D 180803248 180803839 591 False 544.000000 544 84.087000 2903 3469 1 chr7D.!!$F1 566
11 TraesCS5A01G102500 chr7D 241380374 241380951 577 True 420.000000 420 80.801000 2903 3469 1 chr7D.!!$R1 566
12 TraesCS5A01G102500 chr6D 151930200 151930795 595 True 531.000000 531 83.694000 2903 3469 1 chr6D.!!$R2 566
13 TraesCS5A01G102500 chr6D 271015002 271015526 524 False 468.000000 468 82.890000 1 522 1 chr6D.!!$F1 521
14 TraesCS5A01G102500 chr4B 382112124 382112700 576 False 501.000000 501 82.935000 2904 3469 1 chr4B.!!$F1 565
15 TraesCS5A01G102500 chr3D 453102964 453103556 592 False 501.000000 501 82.747000 2903 3469 1 chr3D.!!$F1 566
16 TraesCS5A01G102500 chr3D 451993160 451993735 575 True 379.000000 379 79.564000 2903 3469 1 chr3D.!!$R1 566
17 TraesCS5A01G102500 chr2B 38252597 38253187 590 True 499.000000 499 82.776000 2903 3469 1 chr2B.!!$R1 566
18 TraesCS5A01G102500 chr2A 718248632 718249227 595 True 496.000000 496 82.558000 2903 3473 1 chr2A.!!$R3 570
19 TraesCS5A01G102500 chr4D 346442491 346443075 584 True 477.000000 477 82.155000 2903 3469 1 chr4D.!!$R1 566
20 TraesCS5A01G102500 chr4D 404842432 404842991 559 True 303.000000 303 77.609000 2902 3467 1 chr4D.!!$R2 565
21 TraesCS5A01G102500 chr7A 148515008 148515596 588 False 460.000000 460 81.681000 2903 3466 1 chr7A.!!$F1 563
22 TraesCS5A01G102500 chr7A 16728390 16728966 576 True 422.000000 422 80.840000 2903 3465 1 chr7A.!!$R1 562
23 TraesCS5A01G102500 chr6B 16536095 16536625 530 True 390.000000 390 80.112000 1 534 1 chr6B.!!$R1 533
24 TraesCS5A01G102500 chr1B 669766558 669767147 589 True 377.000000 377 79.407000 2903 3470 1 chr1B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 2180 0.179012 GACACCCCGAAAAACCAGGA 60.179 55.0 0.00 0.0 0.0 3.86 F
1690 2904 0.108138 GGGTGATGCTGAGCTACGTT 60.108 55.0 5.83 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2623 3837 0.106708 CGGGTCGGTGGATTGATCAT 59.893 55.0 0.0 0.0 0.0 2.45 R
3587 6089 0.033601 TGGCCCACTTGTCAGTTGTT 60.034 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 0.951558 GGCAGTTGACGTGGAAATGT 59.048 50.000 0.00 0.00 0.00 2.71
91 94 1.606313 CGTGGAAATGTTGGGCCCT 60.606 57.895 25.70 0.00 0.00 5.19
93 96 1.078347 TGGAAATGTTGGGCCCTCC 59.922 57.895 25.70 20.69 0.00 4.30
232 235 2.751259 AGACCATGCAACACATCATCAC 59.249 45.455 0.00 0.00 36.64 3.06
334 347 2.521958 CTTCCTACCCTGGTGCACGG 62.522 65.000 11.45 9.31 0.00 4.94
426 439 2.124653 TGGAAACACCGCAACCGT 60.125 55.556 0.00 0.00 42.61 4.83
429 442 1.430228 GAAACACCGCAACCGTTGT 59.570 52.632 12.77 0.00 42.09 3.32
436 449 1.425825 CGCAACCGTTGTGTGTTCA 59.574 52.632 15.35 0.00 36.45 3.18
531 544 4.543692 GTGCTCGCGGACTAAATCTATTA 58.456 43.478 6.13 0.00 0.00 0.98
534 547 5.221130 GCTCGCGGACTAAATCTATTACTT 58.779 41.667 6.13 0.00 0.00 2.24
535 548 5.690857 GCTCGCGGACTAAATCTATTACTTT 59.309 40.000 6.13 0.00 0.00 2.66
536 549 6.200475 GCTCGCGGACTAAATCTATTACTTTT 59.800 38.462 6.13 0.00 0.00 2.27
551 580 8.698210 TCTATTACTTTTAAGATCGTTGGGCTA 58.302 33.333 0.00 0.00 0.00 3.93
603 637 2.202946 TTCGAGCACGCACAACCA 60.203 55.556 0.00 0.00 39.58 3.67
606 640 2.899838 GAGCACGCACAACCACCA 60.900 61.111 0.00 0.00 0.00 4.17
616 650 1.074248 CAACCACCACCCCCTGTAC 59.926 63.158 0.00 0.00 0.00 2.90
889 2089 3.797331 CCTGTCACTCTCAGGCCA 58.203 61.111 5.01 0.00 44.46 5.36
958 2158 6.425721 TGACTAGTAAACTGAAATTTCCGTGG 59.574 38.462 14.94 6.13 0.00 4.94
980 2180 0.179012 GACACCCCGAAAAACCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
981 2181 0.466739 ACACCCCGAAAAACCAGGAC 60.467 55.000 0.00 0.00 0.00 3.85
982 2182 1.228033 ACCCCGAAAAACCAGGACG 60.228 57.895 0.00 0.00 0.00 4.79
985 2185 2.622962 CCGAAAAACCAGGACGGGC 61.623 63.158 0.00 0.00 40.22 6.13
986 2186 1.894756 CGAAAAACCAGGACGGGCA 60.895 57.895 0.00 0.00 40.22 5.36
1015 2222 3.506096 CCATGGAGCAGCAGCACG 61.506 66.667 5.56 0.00 45.49 5.34
1185 2394 1.129811 GTTGCAATTACTTCCGACCGG 59.870 52.381 0.59 0.00 0.00 5.28
1262 2471 0.984230 TCTTCATGGCGGAAGACCTT 59.016 50.000 14.99 0.00 46.16 3.50
1450 2659 2.125673 GTACACGGCGCTCATGGT 60.126 61.111 6.90 1.49 0.00 3.55
1464 2673 4.776322 TGGTGGGGCGCTTCATCG 62.776 66.667 7.64 0.00 0.00 3.84
1481 2690 4.814294 GCTGGAATCGGCGTCGGT 62.814 66.667 10.62 0.00 35.34 4.69
1565 2774 1.381327 CAGCTCCCTTCCCGAGGTA 60.381 63.158 0.00 0.00 44.71 3.08
1588 2797 0.962855 GCTGCAGAGTTTCCCCTTCC 60.963 60.000 20.43 0.00 0.00 3.46
1590 2799 0.401738 TGCAGAGTTTCCCCTTCCTG 59.598 55.000 0.00 0.00 0.00 3.86
1593 2802 1.003696 CAGAGTTTCCCCTTCCTGGTC 59.996 57.143 0.00 0.00 0.00 4.02
1595 2804 1.674651 GTTTCCCCTTCCTGGTCGC 60.675 63.158 0.00 0.00 0.00 5.19
1617 2831 4.093408 GCAACTCGTAATGATGCTTCAGAA 59.907 41.667 8.40 0.00 34.73 3.02
1618 2832 5.726138 GCAACTCGTAATGATGCTTCAGAAG 60.726 44.000 5.72 5.72 34.73 2.85
1633 2847 5.107143 GCTTCAGAAGAGTTGTCTCACAATC 60.107 44.000 14.86 0.00 40.59 2.67
1690 2904 0.108138 GGGTGATGCTGAGCTACGTT 60.108 55.000 5.83 0.00 0.00 3.99
1919 3133 1.272480 TGGAGATCGAGGAGGTTGTCA 60.272 52.381 0.00 0.00 0.00 3.58
2029 3243 2.667536 ACAGTTCTGGCGCTGCAG 60.668 61.111 10.11 10.11 36.26 4.41
2107 3321 3.706373 ATGGCCGGCGTCACTTCT 61.706 61.111 22.54 0.00 0.00 2.85
2248 3462 4.457496 ATGACGGCGTCCCTGCTG 62.457 66.667 34.28 0.00 46.83 4.41
2395 3609 1.335496 GTGTACAGCTCGGAGATCCTC 59.665 57.143 9.69 0.00 33.89 3.71
2623 3837 0.459489 AGCAGCTTTTCCGCACAAAA 59.541 45.000 0.00 0.00 0.00 2.44
2637 3851 3.181397 GCACAAAATGATCAATCCACCG 58.819 45.455 0.00 0.00 0.00 4.94
2688 3914 2.174639 TGTGATTGGAAATAGGGCGGAT 59.825 45.455 0.00 0.00 0.00 4.18
2693 3919 2.915869 TGGAAATAGGGCGGATAGGAT 58.084 47.619 0.00 0.00 0.00 3.24
2703 3929 1.121407 CGGATAGGATGGCCCACAGA 61.121 60.000 0.00 0.00 37.41 3.41
2711 4124 2.504175 GGATGGCCCACAGAGTAAAGTA 59.496 50.000 0.00 0.00 34.14 2.24
2713 4126 4.385310 GGATGGCCCACAGAGTAAAGTATT 60.385 45.833 0.00 0.00 34.14 1.89
2716 4129 3.542648 GCCCACAGAGTAAAGTATTCCC 58.457 50.000 0.00 0.00 0.00 3.97
2719 4132 4.141688 CCCACAGAGTAAAGTATTCCCTCC 60.142 50.000 0.00 0.00 0.00 4.30
2720 4133 4.441634 CCACAGAGTAAAGTATTCCCTCCG 60.442 50.000 0.00 0.00 0.00 4.63
2725 4138 2.265526 AAAGTATTCCCTCCGGTCCT 57.734 50.000 0.00 0.00 0.00 3.85
2730 4143 4.106324 AGTATTCCCTCCGGTCCTTTTTA 58.894 43.478 0.00 0.00 0.00 1.52
2733 4146 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2737 4150 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2738 4151 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
2739 4152 1.459592 CGGTCCTTTTTACTCTGCACG 59.540 52.381 0.00 0.00 0.00 5.34
2740 4153 2.490991 GGTCCTTTTTACTCTGCACGT 58.509 47.619 0.00 0.00 0.00 4.49
2742 4155 4.060205 GGTCCTTTTTACTCTGCACGTTA 58.940 43.478 0.00 0.00 0.00 3.18
2743 4156 4.151867 GGTCCTTTTTACTCTGCACGTTAG 59.848 45.833 0.00 0.00 0.00 2.34
2744 4157 4.986659 GTCCTTTTTACTCTGCACGTTAGA 59.013 41.667 0.00 0.00 0.00 2.10
2745 4158 5.638234 GTCCTTTTTACTCTGCACGTTAGAT 59.362 40.000 0.15 0.00 0.00 1.98
2746 4159 6.147328 GTCCTTTTTACTCTGCACGTTAGATT 59.853 38.462 0.15 0.00 0.00 2.40
2749 4162 6.476243 TTTTACTCTGCACGTTAGATTTCC 57.524 37.500 0.15 0.00 0.00 3.13
2754 4167 4.637276 TCTGCACGTTAGATTTCCTGAAA 58.363 39.130 0.00 0.00 34.46 2.69
2755 4168 5.060506 TCTGCACGTTAGATTTCCTGAAAA 58.939 37.500 0.00 0.00 33.56 2.29
2756 4169 5.705441 TCTGCACGTTAGATTTCCTGAAAAT 59.295 36.000 0.00 0.00 40.34 1.82
2771 4184 9.612066 TTTCCTGAAAATCAAATTTTGCTAAGT 57.388 25.926 4.19 0.00 42.15 2.24
2830 5108 7.672983 ATCTTGCGGTATATCATAAGTTTGG 57.327 36.000 0.00 0.00 0.00 3.28
2835 5113 5.995897 GCGGTATATCATAAGTTTGGGTCTT 59.004 40.000 0.00 0.00 0.00 3.01
2836 5114 6.073222 GCGGTATATCATAAGTTTGGGTCTTG 60.073 42.308 0.00 0.00 0.00 3.02
2837 5115 6.990349 CGGTATATCATAAGTTTGGGTCTTGT 59.010 38.462 0.00 0.00 0.00 3.16
2838 5116 7.497909 CGGTATATCATAAGTTTGGGTCTTGTT 59.502 37.037 0.00 0.00 0.00 2.83
2844 5122 9.920946 ATCATAAGTTTGGGTCTTGTTATACAT 57.079 29.630 0.00 0.00 0.00 2.29
2849 5127 9.920946 AAGTTTGGGTCTTGTTATACATATGAT 57.079 29.630 10.38 1.47 0.00 2.45
2876 5154 9.592196 AATACAGACAATATTATTGGCAATCCT 57.408 29.630 21.47 7.80 0.00 3.24
2877 5155 7.281040 ACAGACAATATTATTGGCAATCCTG 57.719 36.000 21.47 13.71 0.00 3.86
2878 5156 6.835488 ACAGACAATATTATTGGCAATCCTGT 59.165 34.615 21.47 14.25 0.00 4.00
2879 5157 7.342799 ACAGACAATATTATTGGCAATCCTGTT 59.657 33.333 21.47 7.02 0.00 3.16
2880 5158 8.199449 CAGACAATATTATTGGCAATCCTGTTT 58.801 33.333 21.47 6.63 0.00 2.83
2881 5159 8.761689 AGACAATATTATTGGCAATCCTGTTTT 58.238 29.630 21.47 3.23 0.00 2.43
2882 5160 9.382275 GACAATATTATTGGCAATCCTGTTTTT 57.618 29.630 17.41 0.42 0.00 1.94
2913 5191 6.142498 TCATAGGGCATTGTTAAATGGGAAT 58.858 36.000 1.01 0.00 42.98 3.01
2917 5195 9.836179 ATAGGGCATTGTTAAATGGGAATATAA 57.164 29.630 1.01 0.00 42.98 0.98
2963 5243 3.260128 GGGTAGGGAATCGTATAACCCAG 59.740 52.174 0.00 0.00 44.25 4.45
2964 5244 3.306571 GGTAGGGAATCGTATAACCCAGC 60.307 52.174 0.00 0.00 44.25 4.85
2966 5246 1.697982 GGGAATCGTATAACCCAGCCT 59.302 52.381 0.00 0.00 41.72 4.58
2969 5249 3.008049 GGAATCGTATAACCCAGCCTCAT 59.992 47.826 0.00 0.00 0.00 2.90
2978 5266 0.552848 CCCAGCCTCATGTACCCATT 59.447 55.000 0.00 0.00 0.00 3.16
3068 5369 6.712998 TGCTAGGTAAAAACTCTAATGTGCAA 59.287 34.615 0.00 0.00 0.00 4.08
3332 5834 6.024656 GTTGTAAACGCGGGTACCCATATG 62.025 50.000 30.44 17.86 41.90 1.78
3355 5857 0.325765 TGTCGGGTGATGGGTATGGA 60.326 55.000 0.00 0.00 0.00 3.41
3407 5909 3.798515 TGGGTGATAGGTAAGTTCAGGT 58.201 45.455 0.00 0.00 0.00 4.00
3409 5911 5.343715 TGGGTGATAGGTAAGTTCAGGTTA 58.656 41.667 0.00 0.00 0.00 2.85
3426 5928 3.052642 AGGTTAGACGGGTAAGGGTATGA 60.053 47.826 0.00 0.00 0.00 2.15
3435 5937 2.399580 GTAAGGGTATGAGGTGGCTCT 58.600 52.381 0.00 0.00 0.00 4.09
3438 5940 1.576272 AGGGTATGAGGTGGCTCTACT 59.424 52.381 0.00 0.00 0.00 2.57
3450 5952 2.691526 TGGCTCTACTTGTACCCATACG 59.308 50.000 0.00 0.00 33.60 3.06
3452 5954 3.885297 GGCTCTACTTGTACCCATACGTA 59.115 47.826 0.00 0.00 33.60 3.57
3527 6029 1.375523 GTGGGTGGTGACGATGTCC 60.376 63.158 0.00 0.00 0.00 4.02
3548 6050 5.296151 CCTGAATTAGGGAGTGCTAATCA 57.704 43.478 0.00 0.00 43.33 2.57
3549 6051 5.059833 CCTGAATTAGGGAGTGCTAATCAC 58.940 45.833 0.00 0.00 43.33 3.06
3550 6052 6.250913 CCTGAATTAGGGAGTGCTAATCACG 61.251 48.000 0.00 0.00 45.49 4.35
3551 6053 8.577436 CCTGAATTAGGGAGTGCTAATCACGT 62.577 46.154 0.00 0.00 45.49 4.49
3556 6058 3.395669 GTGCTAATCACGTCGGCC 58.604 61.111 0.00 0.00 35.76 6.13
3557 6059 1.153628 GTGCTAATCACGTCGGCCT 60.154 57.895 0.00 0.00 35.76 5.19
3558 6060 0.739813 GTGCTAATCACGTCGGCCTT 60.740 55.000 0.00 0.00 35.76 4.35
3559 6061 0.459585 TGCTAATCACGTCGGCCTTC 60.460 55.000 0.00 0.00 0.00 3.46
3560 6062 0.459585 GCTAATCACGTCGGCCTTCA 60.460 55.000 0.00 0.00 0.00 3.02
3561 6063 2.004583 CTAATCACGTCGGCCTTCAA 57.995 50.000 0.00 0.00 0.00 2.69
3562 6064 2.550978 CTAATCACGTCGGCCTTCAAT 58.449 47.619 0.00 0.00 0.00 2.57
3563 6065 1.369625 AATCACGTCGGCCTTCAATC 58.630 50.000 0.00 0.00 0.00 2.67
3564 6066 0.249120 ATCACGTCGGCCTTCAATCA 59.751 50.000 0.00 0.00 0.00 2.57
3565 6067 0.249120 TCACGTCGGCCTTCAATCAT 59.751 50.000 0.00 0.00 0.00 2.45
3566 6068 0.374758 CACGTCGGCCTTCAATCATG 59.625 55.000 0.00 0.00 0.00 3.07
3567 6069 0.744414 ACGTCGGCCTTCAATCATGG 60.744 55.000 0.00 0.00 0.00 3.66
3568 6070 1.439353 CGTCGGCCTTCAATCATGGG 61.439 60.000 0.00 0.00 0.00 4.00
3569 6071 0.394352 GTCGGCCTTCAATCATGGGT 60.394 55.000 0.00 0.00 0.00 4.51
3570 6072 0.331278 TCGGCCTTCAATCATGGGTT 59.669 50.000 0.00 0.00 0.00 4.11
3571 6073 0.457035 CGGCCTTCAATCATGGGTTG 59.543 55.000 0.00 0.00 0.00 3.77
3572 6074 0.826062 GGCCTTCAATCATGGGTTGG 59.174 55.000 0.00 0.61 0.00 3.77
3573 6075 0.826062 GCCTTCAATCATGGGTTGGG 59.174 55.000 10.51 7.08 0.00 4.12
3574 6076 0.826062 CCTTCAATCATGGGTTGGGC 59.174 55.000 10.51 0.00 0.00 5.36
3575 6077 0.826062 CTTCAATCATGGGTTGGGCC 59.174 55.000 0.00 0.00 0.00 5.80
3576 6078 0.969917 TTCAATCATGGGTTGGGCCG 60.970 55.000 0.00 0.00 38.44 6.13
3577 6079 1.379710 CAATCATGGGTTGGGCCGA 60.380 57.895 0.00 0.00 38.44 5.54
3578 6080 1.076777 AATCATGGGTTGGGCCGAG 60.077 57.895 0.00 0.00 38.44 4.63
3579 6081 2.572333 AATCATGGGTTGGGCCGAGG 62.572 60.000 0.00 0.00 38.44 4.63
3580 6082 3.727258 CATGGGTTGGGCCGAGGA 61.727 66.667 0.00 0.00 38.44 3.71
3581 6083 3.728373 ATGGGTTGGGCCGAGGAC 61.728 66.667 0.00 0.00 38.44 3.85
3589 6091 4.735358 GGCCGAGGACCCCCAAAC 62.735 72.222 0.00 0.00 33.88 2.93
3590 6092 3.961414 GCCGAGGACCCCCAAACA 61.961 66.667 0.00 0.00 33.88 2.83
3591 6093 2.840576 CCGAGGACCCCCAAACAA 59.159 61.111 0.00 0.00 33.88 2.83
3592 6094 1.602605 CCGAGGACCCCCAAACAAC 60.603 63.158 0.00 0.00 33.88 3.32
3593 6095 1.454539 CGAGGACCCCCAAACAACT 59.545 57.895 0.00 0.00 33.88 3.16
3594 6096 0.889186 CGAGGACCCCCAAACAACTG 60.889 60.000 0.00 0.00 33.88 3.16
3595 6097 0.476771 GAGGACCCCCAAACAACTGA 59.523 55.000 0.00 0.00 33.88 3.41
3596 6098 0.185175 AGGACCCCCAAACAACTGAC 59.815 55.000 0.00 0.00 33.88 3.51
3597 6099 0.106419 GGACCCCCAAACAACTGACA 60.106 55.000 0.00 0.00 0.00 3.58
3598 6100 1.686741 GGACCCCCAAACAACTGACAA 60.687 52.381 0.00 0.00 0.00 3.18
3599 6101 1.681264 GACCCCCAAACAACTGACAAG 59.319 52.381 0.00 0.00 0.00 3.16
3600 6102 1.006639 ACCCCCAAACAACTGACAAGT 59.993 47.619 0.00 0.00 38.71 3.16
3601 6103 1.408702 CCCCCAAACAACTGACAAGTG 59.591 52.381 0.00 0.00 36.51 3.16
3602 6104 1.408702 CCCCAAACAACTGACAAGTGG 59.591 52.381 0.00 0.00 36.51 4.00
3603 6105 1.408702 CCCAAACAACTGACAAGTGGG 59.591 52.381 0.00 0.00 36.51 4.61
3604 6106 1.202405 CCAAACAACTGACAAGTGGGC 60.202 52.381 0.00 0.00 36.51 5.36
3605 6107 1.111277 AAACAACTGACAAGTGGGCC 58.889 50.000 0.00 0.00 36.51 5.80
3606 6108 0.033601 AACAACTGACAAGTGGGCCA 60.034 50.000 0.00 0.00 36.51 5.36
3607 6109 0.185901 ACAACTGACAAGTGGGCCAT 59.814 50.000 10.70 0.00 36.51 4.40
3608 6110 0.599558 CAACTGACAAGTGGGCCATG 59.400 55.000 10.70 7.70 36.51 3.66
3609 6111 0.185901 AACTGACAAGTGGGCCATGT 59.814 50.000 10.70 11.73 36.51 3.21
3610 6112 0.185901 ACTGACAAGTGGGCCATGTT 59.814 50.000 10.70 3.46 34.48 2.71
3611 6113 1.331214 CTGACAAGTGGGCCATGTTT 58.669 50.000 10.70 1.81 0.00 2.83
3612 6114 1.688197 CTGACAAGTGGGCCATGTTTT 59.312 47.619 10.70 0.00 0.00 2.43
3613 6115 2.102925 CTGACAAGTGGGCCATGTTTTT 59.897 45.455 10.70 0.00 0.00 1.94
3614 6116 2.102252 TGACAAGTGGGCCATGTTTTTC 59.898 45.455 10.70 8.39 0.00 2.29
3615 6117 2.102252 GACAAGTGGGCCATGTTTTTCA 59.898 45.455 10.70 0.00 0.00 2.69
3616 6118 2.705127 ACAAGTGGGCCATGTTTTTCAT 59.295 40.909 10.70 0.00 37.22 2.57
3626 6128 4.196626 CATGTTTTTCATGCTCCATGGT 57.803 40.909 12.58 0.00 45.69 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 94 5.440207 TGTGAAGATCTTGATTCATGGGA 57.560 39.130 14.00 0.00 37.72 4.37
93 96 6.073327 CCATGTGAAGATCTTGATTCATGG 57.927 41.667 25.66 25.66 42.80 3.66
94 97 5.299531 AGCCATGTGAAGATCTTGATTCATG 59.700 40.000 14.00 18.24 37.72 3.07
95 98 5.446860 AGCCATGTGAAGATCTTGATTCAT 58.553 37.500 14.00 8.73 37.72 2.57
96 99 4.851843 AGCCATGTGAAGATCTTGATTCA 58.148 39.130 14.00 1.10 33.16 2.57
99 102 3.464907 CGAGCCATGTGAAGATCTTGAT 58.535 45.455 14.00 0.00 0.00 2.57
426 439 0.741574 AGTCGCCGTTGAACACACAA 60.742 50.000 0.00 0.00 0.00 3.33
429 442 1.593209 GGAGTCGCCGTTGAACACA 60.593 57.895 0.00 0.00 0.00 3.72
531 544 4.395231 GCTTAGCCCAACGATCTTAAAAGT 59.605 41.667 0.00 0.00 0.00 2.66
534 547 3.945346 TGCTTAGCCCAACGATCTTAAA 58.055 40.909 0.29 0.00 0.00 1.52
535 548 3.620427 TGCTTAGCCCAACGATCTTAA 57.380 42.857 0.29 0.00 0.00 1.85
536 549 3.494398 GGATGCTTAGCCCAACGATCTTA 60.494 47.826 0.29 0.00 0.00 2.10
603 637 1.080538 GGAGAGTACAGGGGGTGGT 59.919 63.158 0.00 0.00 0.00 4.16
606 640 0.635555 GTAGGGAGAGTACAGGGGGT 59.364 60.000 0.00 0.00 0.00 4.95
616 650 7.308450 TCATTTCATTGATAGGTAGGGAGAG 57.692 40.000 0.00 0.00 0.00 3.20
705 739 5.359194 ACCAAGATTCCACGTCATCTATT 57.641 39.130 2.59 0.00 0.00 1.73
752 786 3.013276 TCGCCTTATTACATCGCTCAG 57.987 47.619 0.00 0.00 0.00 3.35
889 2089 0.892755 TATCGACGGGCAAGTCAAGT 59.107 50.000 11.82 1.42 40.98 3.16
958 2158 1.104577 TGGTTTTTCGGGGTGTCTGC 61.105 55.000 0.00 0.00 0.00 4.26
980 2180 0.680061 GGCTATAGCTACTTGCCCGT 59.320 55.000 23.53 0.00 44.23 5.28
981 2181 0.679505 TGGCTATAGCTACTTGCCCG 59.320 55.000 23.53 0.11 44.23 6.13
982 2182 2.616510 CCATGGCTATAGCTACTTGCCC 60.617 54.545 23.53 5.62 44.23 5.36
985 2185 3.007290 TGCTCCATGGCTATAGCTACTTG 59.993 47.826 23.53 13.71 41.70 3.16
986 2186 3.242867 TGCTCCATGGCTATAGCTACTT 58.757 45.455 23.53 1.30 41.70 2.24
1283 2492 4.074526 GCACCGGAGAGCAGCTCA 62.075 66.667 24.64 0.00 45.81 4.26
1464 2673 2.894240 TAACCGACGCCGATTCCAGC 62.894 60.000 0.00 0.00 38.22 4.85
1565 2774 1.968540 GGGAAACTCTGCAGCGCTT 60.969 57.895 7.50 0.00 0.00 4.68
1588 2797 1.990799 TCATTACGAGTTGCGACCAG 58.009 50.000 0.00 0.00 44.57 4.00
1590 2799 1.004927 GCATCATTACGAGTTGCGACC 60.005 52.381 0.00 0.00 44.57 4.79
1593 2802 3.542875 CTGAAGCATCATTACGAGTTGCG 60.543 47.826 0.00 0.00 39.59 4.85
1595 2804 5.578336 TCTTCTGAAGCATCATTACGAGTTG 59.422 40.000 12.54 0.00 34.37 3.16
1633 2847 8.628882 AAATCTTTACAAAAGAAAGGAACACG 57.371 30.769 6.21 0.00 35.11 4.49
1690 2904 0.320421 CCGAGAAGGCGAAGTTGGAA 60.320 55.000 0.00 0.00 0.00 3.53
2026 3240 2.684843 CGCCTGCTGGAAGAACTGC 61.685 63.158 14.77 0.00 34.07 4.40
2029 3243 2.383527 CGACGCCTGCTGGAAGAAC 61.384 63.158 14.77 5.82 34.07 3.01
2059 3273 4.468689 GGGCCGTAGAGCACCACC 62.469 72.222 0.00 0.00 0.00 4.61
2104 3318 1.554822 CCCAGGAGGAGGGTGTTAGAA 60.555 57.143 0.00 0.00 41.61 2.10
2107 3321 4.910613 CCCAGGAGGAGGGTGTTA 57.089 61.111 0.00 0.00 41.61 2.41
2242 3456 4.106925 GAGCCCAGGACCAGCAGG 62.107 72.222 0.00 0.00 42.21 4.85
2248 3462 3.607370 GAACACGGAGCCCAGGACC 62.607 68.421 0.00 0.00 0.00 4.46
2449 3663 2.240500 GGTGACGATGCCGCTCATC 61.241 63.158 0.00 5.93 46.32 2.92
2623 3837 0.106708 CGGGTCGGTGGATTGATCAT 59.893 55.000 0.00 0.00 0.00 2.45
2657 3871 7.309990 CCCTATTTCCAATCACAAGTTGACAAT 60.310 37.037 10.54 0.00 36.92 2.71
2688 3914 2.561209 TTACTCTGTGGGCCATCCTA 57.439 50.000 10.70 0.00 36.20 2.94
2693 3919 3.054655 GGAATACTTTACTCTGTGGGCCA 60.055 47.826 0.00 0.00 0.00 5.36
2716 4129 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
2719 4132 1.459592 CGTGCAGAGTAAAAAGGACCG 59.540 52.381 0.00 0.00 0.00 4.79
2720 4133 2.490991 ACGTGCAGAGTAAAAAGGACC 58.509 47.619 0.00 0.00 0.00 4.46
2725 4138 6.708949 AGGAAATCTAACGTGCAGAGTAAAAA 59.291 34.615 6.33 0.00 0.00 1.94
2730 4143 3.258372 TCAGGAAATCTAACGTGCAGAGT 59.742 43.478 6.33 1.08 0.00 3.24
2733 4146 5.356882 TTTTCAGGAAATCTAACGTGCAG 57.643 39.130 0.00 0.00 0.00 4.41
2745 4158 9.612066 ACTTAGCAAAATTTGATTTTCAGGAAA 57.388 25.926 10.26 0.00 40.27 3.13
2787 4200 9.530633 CGCAAGATACCTAAAAACTCTACTAAT 57.469 33.333 0.00 0.00 43.02 1.73
2788 4201 7.977853 CCGCAAGATACCTAAAAACTCTACTAA 59.022 37.037 0.00 0.00 43.02 2.24
2789 4202 7.123247 ACCGCAAGATACCTAAAAACTCTACTA 59.877 37.037 0.00 0.00 43.02 1.82
2790 4203 6.070938 ACCGCAAGATACCTAAAAACTCTACT 60.071 38.462 0.00 0.00 43.02 2.57
2791 4204 6.104665 ACCGCAAGATACCTAAAAACTCTAC 58.895 40.000 0.00 0.00 43.02 2.59
2792 4205 6.290294 ACCGCAAGATACCTAAAAACTCTA 57.710 37.500 0.00 0.00 43.02 2.43
2794 4207 8.828688 ATATACCGCAAGATACCTAAAAACTC 57.171 34.615 0.00 0.00 43.02 3.01
2800 4213 9.251440 ACTTATGATATACCGCAAGATACCTAA 57.749 33.333 0.00 0.00 43.02 2.69
2812 5090 6.990349 ACAAGACCCAAACTTATGATATACCG 59.010 38.462 0.00 0.00 0.00 4.02
2850 5128 9.592196 AGGATTGCCAATAATATTGTCTGTATT 57.408 29.630 11.55 0.00 36.29 1.89
2851 5129 9.017509 CAGGATTGCCAATAATATTGTCTGTAT 57.982 33.333 11.55 0.00 36.29 2.29
2852 5130 7.998383 ACAGGATTGCCAATAATATTGTCTGTA 59.002 33.333 11.55 0.00 36.29 2.74
2853 5131 6.835488 ACAGGATTGCCAATAATATTGTCTGT 59.165 34.615 11.55 10.86 36.29 3.41
2854 5132 7.281040 ACAGGATTGCCAATAATATTGTCTG 57.719 36.000 11.55 10.38 36.29 3.51
2855 5133 7.902920 AACAGGATTGCCAATAATATTGTCT 57.097 32.000 11.55 0.00 36.29 3.41
2856 5134 8.947055 AAAACAGGATTGCCAATAATATTGTC 57.053 30.769 11.55 0.00 36.29 3.18
2879 5157 6.916360 ACAATGCCCTATGAAGAAGAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
2880 5158 6.916360 AACAATGCCCTATGAAGAAGAAAA 57.084 33.333 0.00 0.00 0.00 2.29
2881 5159 8.415950 TTTAACAATGCCCTATGAAGAAGAAA 57.584 30.769 0.00 0.00 0.00 2.52
2882 5160 8.469200 CATTTAACAATGCCCTATGAAGAAGAA 58.531 33.333 0.00 0.00 33.57 2.52
2883 5161 7.068593 CCATTTAACAATGCCCTATGAAGAAGA 59.931 37.037 0.00 0.00 38.88 2.87
2884 5162 7.205297 CCATTTAACAATGCCCTATGAAGAAG 58.795 38.462 0.00 0.00 38.88 2.85
2885 5163 6.098124 CCCATTTAACAATGCCCTATGAAGAA 59.902 38.462 0.00 0.00 38.88 2.52
2886 5164 5.598005 CCCATTTAACAATGCCCTATGAAGA 59.402 40.000 0.00 0.00 38.88 2.87
2887 5165 5.598005 TCCCATTTAACAATGCCCTATGAAG 59.402 40.000 0.00 0.00 38.88 3.02
2888 5166 5.523588 TCCCATTTAACAATGCCCTATGAA 58.476 37.500 0.00 0.00 38.88 2.57
2889 5167 5.136068 TCCCATTTAACAATGCCCTATGA 57.864 39.130 0.00 0.00 38.88 2.15
2890 5168 5.867903 TTCCCATTTAACAATGCCCTATG 57.132 39.130 0.00 0.00 38.88 2.23
2891 5169 9.836179 TTATATTCCCATTTAACAATGCCCTAT 57.164 29.630 0.00 0.00 38.88 2.57
2892 5170 9.084533 GTTATATTCCCATTTAACAATGCCCTA 57.915 33.333 0.00 0.00 38.88 3.53
2893 5171 7.566879 TGTTATATTCCCATTTAACAATGCCCT 59.433 33.333 0.00 0.00 38.88 5.19
2894 5172 7.731054 TGTTATATTCCCATTTAACAATGCCC 58.269 34.615 0.00 0.00 38.88 5.36
2899 5177 9.937876 TGGGTATGTTATATTCCCATTTAACAA 57.062 29.630 2.41 0.00 42.52 2.83
2963 5243 5.852282 ACATTTAAATGGGTACATGAGGC 57.148 39.130 27.43 0.00 40.70 4.70
2964 5244 7.093988 TGTCAACATTTAAATGGGTACATGAGG 60.094 37.037 27.43 3.22 40.70 3.86
2966 5246 7.767250 TGTCAACATTTAAATGGGTACATGA 57.233 32.000 27.43 18.33 40.70 3.07
2969 5249 7.429633 CACTTGTCAACATTTAAATGGGTACA 58.570 34.615 27.43 22.91 40.70 2.90
2978 5266 7.176589 AGAAAACCCACTTGTCAACATTTAA 57.823 32.000 0.00 0.00 0.00 1.52
3293 5681 6.412362 CGTTTACAACACATCGAATTCAACAA 59.588 34.615 6.22 0.00 0.00 2.83
3295 5683 5.164320 GCGTTTACAACACATCGAATTCAAC 60.164 40.000 6.22 0.00 0.00 3.18
3296 5684 4.907010 GCGTTTACAACACATCGAATTCAA 59.093 37.500 6.22 0.00 0.00 2.69
3297 5685 4.459606 GCGTTTACAACACATCGAATTCA 58.540 39.130 6.22 0.00 0.00 2.57
3298 5686 3.532977 CGCGTTTACAACACATCGAATTC 59.467 43.478 0.00 0.00 0.00 2.17
3303 5692 0.179235 CCCGCGTTTACAACACATCG 60.179 55.000 4.92 0.00 0.00 3.84
3361 5863 3.071602 CCCATACTCATCAGGGGTACAAG 59.928 52.174 0.00 0.00 37.66 3.16
3370 5872 3.903714 TCACCCATACCCATACTCATCAG 59.096 47.826 0.00 0.00 0.00 2.90
3374 5876 4.140543 ACCTATCACCCATACCCATACTCA 60.141 45.833 0.00 0.00 0.00 3.41
3407 5909 3.052642 ACCTCATACCCTTACCCGTCTAA 60.053 47.826 0.00 0.00 0.00 2.10
3409 5911 1.290130 ACCTCATACCCTTACCCGTCT 59.710 52.381 0.00 0.00 0.00 4.18
3426 5928 1.203262 TGGGTACAAGTAGAGCCACCT 60.203 52.381 0.00 0.00 38.29 4.00
3435 5937 2.618241 CCGCTACGTATGGGTACAAGTA 59.382 50.000 0.00 0.00 0.00 2.24
3438 5940 0.746063 CCCGCTACGTATGGGTACAA 59.254 55.000 19.97 0.00 38.18 2.41
3527 6029 4.747108 CGTGATTAGCACTCCCTAATTCAG 59.253 45.833 0.00 0.00 45.49 3.02
3537 6039 1.146358 GGCCGACGTGATTAGCACTC 61.146 60.000 0.00 0.00 45.49 3.51
3539 6041 0.739813 AAGGCCGACGTGATTAGCAC 60.740 55.000 0.00 0.00 44.21 4.40
3540 6042 0.459585 GAAGGCCGACGTGATTAGCA 60.460 55.000 0.00 0.00 0.00 3.49
3541 6043 0.459585 TGAAGGCCGACGTGATTAGC 60.460 55.000 0.00 0.00 0.00 3.09
3542 6044 2.004583 TTGAAGGCCGACGTGATTAG 57.995 50.000 0.00 0.00 0.00 1.73
3543 6045 2.093921 TGATTGAAGGCCGACGTGATTA 60.094 45.455 0.00 0.00 0.00 1.75
3544 6046 1.338674 TGATTGAAGGCCGACGTGATT 60.339 47.619 0.00 0.00 0.00 2.57
3545 6047 0.249120 TGATTGAAGGCCGACGTGAT 59.751 50.000 0.00 0.00 0.00 3.06
3546 6048 0.249120 ATGATTGAAGGCCGACGTGA 59.751 50.000 0.00 0.00 0.00 4.35
3547 6049 0.374758 CATGATTGAAGGCCGACGTG 59.625 55.000 0.00 0.00 0.00 4.49
3548 6050 0.744414 CCATGATTGAAGGCCGACGT 60.744 55.000 0.00 0.00 0.00 4.34
3549 6051 1.439353 CCCATGATTGAAGGCCGACG 61.439 60.000 0.00 0.00 0.00 5.12
3550 6052 0.394352 ACCCATGATTGAAGGCCGAC 60.394 55.000 0.00 0.00 0.00 4.79
3551 6053 0.331278 AACCCATGATTGAAGGCCGA 59.669 50.000 0.00 0.00 0.00 5.54
3552 6054 0.457035 CAACCCATGATTGAAGGCCG 59.543 55.000 0.00 0.00 0.00 6.13
3553 6055 0.826062 CCAACCCATGATTGAAGGCC 59.174 55.000 10.32 0.00 0.00 5.19
3554 6056 0.826062 CCCAACCCATGATTGAAGGC 59.174 55.000 10.32 0.00 0.00 4.35
3555 6057 0.826062 GCCCAACCCATGATTGAAGG 59.174 55.000 10.32 6.10 0.00 3.46
3556 6058 0.826062 GGCCCAACCCATGATTGAAG 59.174 55.000 10.32 4.17 0.00 3.02
3557 6059 0.969917 CGGCCCAACCCATGATTGAA 60.970 55.000 10.32 0.00 33.26 2.69
3558 6060 1.379710 CGGCCCAACCCATGATTGA 60.380 57.895 10.32 0.00 33.26 2.57
3559 6061 1.379710 TCGGCCCAACCCATGATTG 60.380 57.895 0.00 0.00 33.26 2.67
3560 6062 1.076777 CTCGGCCCAACCCATGATT 60.077 57.895 0.00 0.00 33.26 2.57
3561 6063 2.597340 CTCGGCCCAACCCATGAT 59.403 61.111 0.00 0.00 33.26 2.45
3562 6064 3.727258 CCTCGGCCCAACCCATGA 61.727 66.667 0.00 0.00 33.26 3.07
3563 6065 3.727258 TCCTCGGCCCAACCCATG 61.727 66.667 0.00 0.00 33.26 3.66
3564 6066 3.728373 GTCCTCGGCCCAACCCAT 61.728 66.667 0.00 0.00 33.26 4.00
3572 6074 4.735358 GTTTGGGGGTCCTCGGCC 62.735 72.222 0.00 0.00 0.00 6.13
3573 6075 3.501040 TTGTTTGGGGGTCCTCGGC 62.501 63.158 0.00 0.00 0.00 5.54
3574 6076 1.602605 GTTGTTTGGGGGTCCTCGG 60.603 63.158 0.00 0.00 0.00 4.63
3575 6077 0.889186 CAGTTGTTTGGGGGTCCTCG 60.889 60.000 0.00 0.00 0.00 4.63
3576 6078 0.476771 TCAGTTGTTTGGGGGTCCTC 59.523 55.000 0.00 0.00 0.00 3.71
3577 6079 0.185175 GTCAGTTGTTTGGGGGTCCT 59.815 55.000 0.00 0.00 0.00 3.85
3578 6080 0.106419 TGTCAGTTGTTTGGGGGTCC 60.106 55.000 0.00 0.00 0.00 4.46
3579 6081 1.681264 CTTGTCAGTTGTTTGGGGGTC 59.319 52.381 0.00 0.00 0.00 4.46
3580 6082 1.006639 ACTTGTCAGTTGTTTGGGGGT 59.993 47.619 0.00 0.00 0.00 4.95
3581 6083 1.408702 CACTTGTCAGTTGTTTGGGGG 59.591 52.381 0.00 0.00 0.00 5.40
3582 6084 1.408702 CCACTTGTCAGTTGTTTGGGG 59.591 52.381 0.00 0.00 0.00 4.96
3583 6085 1.408702 CCCACTTGTCAGTTGTTTGGG 59.591 52.381 0.00 0.00 0.00 4.12
3584 6086 1.202405 GCCCACTTGTCAGTTGTTTGG 60.202 52.381 0.00 0.00 0.00 3.28
3585 6087 1.202405 GGCCCACTTGTCAGTTGTTTG 60.202 52.381 0.00 0.00 0.00 2.93
3586 6088 1.111277 GGCCCACTTGTCAGTTGTTT 58.889 50.000 0.00 0.00 0.00 2.83
3587 6089 0.033601 TGGCCCACTTGTCAGTTGTT 60.034 50.000 0.00 0.00 0.00 2.83
3588 6090 0.185901 ATGGCCCACTTGTCAGTTGT 59.814 50.000 0.00 0.00 0.00 3.32
3589 6091 0.599558 CATGGCCCACTTGTCAGTTG 59.400 55.000 0.00 0.00 0.00 3.16
3590 6092 0.185901 ACATGGCCCACTTGTCAGTT 59.814 50.000 0.00 0.00 32.52 3.16
3591 6093 0.185901 AACATGGCCCACTTGTCAGT 59.814 50.000 0.00 0.00 36.54 3.41
3592 6094 1.331214 AAACATGGCCCACTTGTCAG 58.669 50.000 0.00 0.00 36.54 3.51
3593 6095 1.786937 AAAACATGGCCCACTTGTCA 58.213 45.000 0.00 0.00 36.54 3.58
3594 6096 2.102252 TGAAAAACATGGCCCACTTGTC 59.898 45.455 0.00 0.00 36.54 3.18
3595 6097 2.114616 TGAAAAACATGGCCCACTTGT 58.885 42.857 0.00 0.00 38.94 3.16
3596 6098 2.906691 TGAAAAACATGGCCCACTTG 57.093 45.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.