Multiple sequence alignment - TraesCS5A01G100400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G100400 chr5A 100.000 4382 0 0 1 4382 144709459 144705078 0.000000e+00 8093
1 TraesCS5A01G100400 chr5A 89.362 94 7 3 4243 4335 196258450 196258541 9.960000e-22 115
2 TraesCS5A01G100400 chr5D 95.427 4089 142 17 8 4058 129479760 129475679 0.000000e+00 6473
3 TraesCS5A01G100400 chr5D 83.740 246 18 14 4138 4382 129474001 129473777 3.430000e-51 213
4 TraesCS5A01G100400 chr5B 96.293 3426 91 10 982 4382 141575067 141571653 0.000000e+00 5590
5 TraesCS5A01G100400 chr5B 87.167 1013 97 21 1 994 141578461 141577463 0.000000e+00 1120
6 TraesCS5A01G100400 chr1B 81.117 376 65 6 1511 1883 83640134 83639762 3.310000e-76 296
7 TraesCS5A01G100400 chr1A 80.840 381 66 7 1507 1883 52237608 52237231 4.290000e-75 292
8 TraesCS5A01G100400 chr1A 88.172 93 9 2 4249 4340 351005549 351005458 4.630000e-20 110
9 TraesCS5A01G100400 chr1D 80.577 381 67 7 1507 1883 52576433 52576056 1.990000e-73 287
10 TraesCS5A01G100400 chr2A 90.909 88 6 2 4249 4335 202840607 202840521 2.770000e-22 117
11 TraesCS5A01G100400 chr4D 90.909 88 5 2 4248 4333 320593821 320593735 9.960000e-22 115
12 TraesCS5A01G100400 chr2B 90.805 87 7 1 4248 4333 197957553 197957467 9.960000e-22 115
13 TraesCS5A01G100400 chr2B 89.888 89 8 1 4246 4333 111483603 111483691 3.580000e-21 113
14 TraesCS5A01G100400 chr2D 89.130 92 9 1 4249 4339 14893821 14893730 3.580000e-21 113
15 TraesCS5A01G100400 chr7D 85.321 109 15 1 4239 4347 518684070 518683963 1.290000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G100400 chr5A 144705078 144709459 4381 True 8093 8093 100.0000 1 4382 1 chr5A.!!$R1 4381
1 TraesCS5A01G100400 chr5D 129473777 129479760 5983 True 3343 6473 89.5835 8 4382 2 chr5D.!!$R1 4374
2 TraesCS5A01G100400 chr5B 141571653 141578461 6808 True 3355 5590 91.7300 1 4382 2 chr5B.!!$R1 4381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 138 0.179059 TCTTCTGCAAGCCGTTGTCA 60.179 50.000 0.00 0.0 35.92 3.58 F
199 205 0.391263 GAAGACCTTTCGGCGACCAT 60.391 55.000 10.16 0.0 0.00 3.55 F
748 766 0.971386 TTCGTGTAACCTCCTCCACC 59.029 55.000 0.00 0.0 0.00 4.61 F
1988 4427 1.079405 GGGATCTTCGTTCACGCCA 60.079 57.895 0.00 0.0 39.60 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 4556 2.332362 GAAGCTCGTCGACCGCCATA 62.332 60.000 17.76 0.00 36.19 2.74 R
2159 4598 2.268920 GCAGGCGATCCAAGGTGA 59.731 61.111 0.00 0.00 33.74 4.02 R
2222 4661 1.413767 CCGCCGAGAACAGTTCATCG 61.414 60.000 15.85 18.31 33.31 3.84 R
3564 6026 1.202627 GGCATTTGGAACCAGCAACAA 60.203 47.619 6.04 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.840427 TTTTTCTTAATCACAGCAGCTAAATAC 57.160 29.630 0.00 0.00 0.00 1.89
42 43 2.354510 GCAGCTAAATACGATGCAACCA 59.645 45.455 0.00 0.00 42.85 3.67
62 66 2.202479 GCCGCTGCAAAATCGTCC 60.202 61.111 0.00 0.00 37.47 4.79
73 77 6.279513 TGCAAAATCGTCCTCCATAATTTT 57.720 33.333 0.00 0.00 31.54 1.82
80 84 4.698304 TCGTCCTCCATAATTTTGACCAAC 59.302 41.667 0.00 0.00 0.00 3.77
92 96 0.749649 TGACCAACCGCTGCAAAAAT 59.250 45.000 0.00 0.00 0.00 1.82
128 134 1.968540 GCCTCTTCTGCAAGCCGTT 60.969 57.895 0.00 0.00 0.00 4.44
132 138 0.179059 TCTTCTGCAAGCCGTTGTCA 60.179 50.000 0.00 0.00 35.92 3.58
155 161 7.649306 GTCAATAATTTGCATCTCATAACCACC 59.351 37.037 0.00 0.00 32.61 4.61
156 162 7.341512 TCAATAATTTGCATCTCATAACCACCA 59.658 33.333 0.00 0.00 32.61 4.17
163 169 5.366477 TGCATCTCATAACCACCAGATCTTA 59.634 40.000 0.00 0.00 0.00 2.10
171 177 7.345653 TCATAACCACCAGATCTTAAGAGATGT 59.654 37.037 11.53 2.96 42.66 3.06
192 198 5.475719 TGTACACTTATGAAGACCTTTCGG 58.524 41.667 0.00 0.00 0.00 4.30
193 199 3.335579 ACACTTATGAAGACCTTTCGGC 58.664 45.455 0.00 0.00 0.00 5.54
199 205 0.391263 GAAGACCTTTCGGCGACCAT 60.391 55.000 10.16 0.00 0.00 3.55
202 208 2.125673 CCTTTCGGCGACCATCGT 60.126 61.111 10.16 0.00 42.81 3.73
209 215 1.551503 CGGCGACCATCGTCATCATG 61.552 60.000 0.00 0.00 46.15 3.07
214 220 2.748605 GACCATCGTCATCATGGAGTC 58.251 52.381 7.05 0.00 43.32 3.36
216 222 1.135046 CATCGTCATCATGGAGTCGC 58.865 55.000 0.00 0.00 0.00 5.19
236 242 3.418068 GAGGTCGCTGCAGCACAC 61.418 66.667 36.03 29.31 42.21 3.82
240 246 1.080501 GTCGCTGCAGCACACTCTA 60.081 57.895 36.03 10.76 42.21 2.43
243 249 1.683385 TCGCTGCAGCACACTCTATAT 59.317 47.619 36.03 0.00 42.21 0.86
274 280 1.227383 GGCCAACCGGATCTGGATT 59.773 57.895 27.90 14.20 34.35 3.01
285 291 2.443255 GGATCTGGATTACCACCACCAT 59.557 50.000 0.00 0.00 41.77 3.55
297 303 2.203070 CACCATGCCCTAGACCGC 60.203 66.667 0.00 0.00 0.00 5.68
333 347 1.114722 CACCACCCAGCCAACACAAT 61.115 55.000 0.00 0.00 0.00 2.71
368 382 8.852135 GTTGCTACTCTACTAATGTATCTCCTT 58.148 37.037 0.00 0.00 0.00 3.36
564 578 1.786928 GCTTGCGTAGATCGTGTTTGC 60.787 52.381 0.00 0.00 42.13 3.68
566 580 1.067693 TGCGTAGATCGTGTTTGCAG 58.932 50.000 0.00 0.00 42.13 4.41
568 582 1.321743 GCGTAGATCGTGTTTGCAGAG 59.678 52.381 0.00 0.00 42.13 3.35
573 590 3.579709 AGATCGTGTTTGCAGAGTACAG 58.420 45.455 0.00 0.00 0.00 2.74
611 628 9.502091 TCTAAAGAAAGCATGTGTAAATACTGT 57.498 29.630 0.00 0.00 0.00 3.55
616 633 8.094548 AGAAAGCATGTGTAAATACTGTCTACA 58.905 33.333 0.00 0.00 0.00 2.74
618 635 6.936279 AGCATGTGTAAATACTGTCTACACT 58.064 36.000 19.69 9.49 43.73 3.55
659 677 6.830838 AGGAGAATGTGCTTTTTCTAATAGGG 59.169 38.462 0.00 0.00 32.46 3.53
670 688 8.739972 GCTTTTTCTAATAGGGTGAATCTTCAA 58.260 33.333 0.00 0.00 39.21 2.69
682 700 4.217118 GTGAATCTTCAATGTGAGCACCTT 59.783 41.667 0.00 0.00 39.21 3.50
748 766 0.971386 TTCGTGTAACCTCCTCCACC 59.029 55.000 0.00 0.00 0.00 4.61
753 771 2.041216 GTGTAACCTCCTCCACCCAAAT 59.959 50.000 0.00 0.00 0.00 2.32
761 779 2.576191 TCCTCCACCCAAATTCCTACAG 59.424 50.000 0.00 0.00 0.00 2.74
772 790 1.549243 TTCCTACAGCACCATCGCCA 61.549 55.000 0.00 0.00 0.00 5.69
817 841 6.940831 TCCATTGCATCTCAATTCGATTTA 57.059 33.333 0.00 0.00 42.48 1.40
823 851 8.633075 TTGCATCTCAATTCGATTTATTTTCC 57.367 30.769 0.00 0.00 0.00 3.13
866 894 3.697045 TCTCAACCAAAAATTCACCGTGT 59.303 39.130 0.00 0.00 0.00 4.49
891 919 1.683385 AGGAGCAAAGCTGTGAAAACC 59.317 47.619 8.49 4.62 39.88 3.27
970 998 3.263170 AGCTTTGTCCAAAAACCCAAAGT 59.737 39.130 11.31 0.00 43.47 2.66
1124 3563 4.129737 CTGGTGGCCGACGACGAT 62.130 66.667 9.28 0.00 42.66 3.73
1658 4097 3.717294 CCCTTCGTCCACCCAGGG 61.717 72.222 2.85 2.85 40.30 4.45
1667 4106 3.322466 CACCCAGGGGAGAACGCT 61.322 66.667 11.37 0.00 44.16 5.07
1943 4382 4.996434 GGGGCGATGGAGATGGCG 62.996 72.222 0.00 0.00 34.25 5.69
1988 4427 1.079405 GGGATCTTCGTTCACGCCA 60.079 57.895 0.00 0.00 39.60 5.69
2090 4529 1.301716 GAACTTGCACCTGAGCCGA 60.302 57.895 0.00 0.00 0.00 5.54
2159 4598 1.424638 CCTCGGGGGACTATGACAAT 58.575 55.000 0.00 0.00 37.23 2.71
2222 4661 0.179215 CGCTTGTGCCGTCAAATCTC 60.179 55.000 0.00 0.00 35.36 2.75
2758 5197 2.360350 ATCAGCAAGCCACCACGG 60.360 61.111 0.00 0.00 38.11 4.94
2793 5232 0.250858 TGACAGTGCCATCTTGGGTG 60.251 55.000 0.00 0.00 38.19 4.61
2967 5413 1.987855 AACCGGCTGCTACTGCCTA 60.988 57.895 0.00 0.00 44.56 3.93
3070 5516 5.749462 AGGTGAGGAGATTTCTACCATTTG 58.251 41.667 0.00 0.00 0.00 2.32
3488 5945 5.855395 GCTACTGCTTGATTTTTCTTCACAG 59.145 40.000 0.00 0.00 36.03 3.66
3564 6026 4.929808 GTGGAGTAATCGTTGTTCATCTGT 59.070 41.667 0.00 0.00 0.00 3.41
3645 6107 1.663379 GGGCGGGGAAAAAGAATCCG 61.663 60.000 0.00 0.00 43.13 4.18
3728 6190 3.102204 CCTGGAGGCATTGAAAAGGATT 58.898 45.455 0.00 0.00 0.00 3.01
3766 6228 0.599060 TACACATCGACCACTGCGAA 59.401 50.000 0.00 0.00 41.52 4.70
3919 6381 1.347707 ACATGTACTGTGTGACCTGGG 59.652 52.381 0.00 0.00 36.48 4.45
3959 6426 6.210984 TGCATTATCCTGGCATGCATAATTTA 59.789 34.615 21.36 8.26 46.53 1.40
3960 6427 6.532657 GCATTATCCTGGCATGCATAATTTAC 59.467 38.462 21.36 8.17 42.49 2.01
3995 6464 0.321021 ACTGGAGACAAGAGCTGCTG 59.679 55.000 7.01 0.00 42.06 4.41
3996 6465 0.321021 CTGGAGACAAGAGCTGCTGT 59.679 55.000 7.01 0.00 42.06 4.40
4178 8253 2.027192 AGCTCCGGTCACAAATGTATGT 60.027 45.455 0.00 0.00 0.00 2.29
4188 8263 5.627780 GTCACAAATGTATGTCGGGTTTTTC 59.372 40.000 0.00 0.00 0.00 2.29
4214 8289 3.441222 GGGGAAAAATATGTCGGTTCGTT 59.559 43.478 0.00 0.00 0.00 3.85
4217 8292 5.106436 GGGAAAAATATGTCGGTTCGTTCTT 60.106 40.000 0.00 0.00 0.00 2.52
4237 8312 7.013083 CGTTCTTCCTAACAGCCTAATCTAGTA 59.987 40.741 0.00 0.00 0.00 1.82
4258 8333 4.338379 AACACAGACTTGTACTTCCTCC 57.662 45.455 0.00 0.00 35.25 4.30
4261 8336 2.963782 ACAGACTTGTACTTCCTCCGTT 59.036 45.455 0.00 0.00 35.25 4.44
4265 8340 6.164176 CAGACTTGTACTTCCTCCGTTAAAT 58.836 40.000 0.00 0.00 0.00 1.40
4337 8414 3.438183 TCTTTGTGGAGGGAGTACTACC 58.562 50.000 17.30 17.30 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.905075 TGCATCGTATTTAGCTGCTGT 58.095 42.857 13.43 0.73 34.02 4.40
21 22 2.354510 TGGTTGCATCGTATTTAGCTGC 59.645 45.455 0.00 0.00 0.00 5.25
25 26 2.286184 GCGGTGGTTGCATCGTATTTAG 60.286 50.000 0.00 0.00 0.00 1.85
28 29 1.373590 GGCGGTGGTTGCATCGTATT 61.374 55.000 0.00 0.00 0.00 1.89
42 43 4.101790 CGATTTTGCAGCGGCGGT 62.102 61.111 5.44 5.44 45.35 5.68
62 66 3.443681 AGCGGTTGGTCAAAATTATGGAG 59.556 43.478 0.00 0.00 0.00 3.86
73 77 0.749649 ATTTTTGCAGCGGTTGGTCA 59.250 45.000 0.00 0.00 0.00 4.02
80 84 0.883814 TTTGCCCATTTTTGCAGCGG 60.884 50.000 0.00 0.00 38.95 5.52
118 124 3.932545 AATTATTGACAACGGCTTGCA 57.067 38.095 0.00 0.00 0.00 4.08
128 134 8.190122 GTGGTTATGAGATGCAAATTATTGACA 58.810 33.333 0.00 0.00 38.94 3.58
132 138 7.560991 TCTGGTGGTTATGAGATGCAAATTATT 59.439 33.333 0.00 0.00 0.00 1.40
163 169 7.726033 AGGTCTTCATAAGTGTACATCTCTT 57.274 36.000 0.00 0.22 34.76 2.85
192 198 0.249447 TCCATGATGACGATGGTCGC 60.249 55.000 3.26 0.00 46.49 5.19
193 199 1.067669 ACTCCATGATGACGATGGTCG 59.932 52.381 3.26 0.00 46.49 4.79
199 205 0.101219 CTGCGACTCCATGATGACGA 59.899 55.000 11.91 0.00 0.00 4.20
202 208 0.749049 CTCCTGCGACTCCATGATGA 59.251 55.000 0.00 0.00 0.00 2.92
209 215 4.500116 GCGACCTCCTGCGACTCC 62.500 72.222 0.00 0.00 0.00 3.85
216 222 4.383861 TGCTGCAGCGACCTCCTG 62.384 66.667 32.11 0.00 45.83 3.86
236 242 2.163815 CCGGGTAGCGGTGAATATAGAG 59.836 54.545 0.00 0.00 0.00 2.43
240 246 1.370064 GCCGGGTAGCGGTGAATAT 59.630 57.895 2.18 0.00 0.00 1.28
258 264 1.488812 TGGTAATCCAGATCCGGTTGG 59.511 52.381 13.84 13.84 39.03 3.77
260 266 1.489230 GGTGGTAATCCAGATCCGGTT 59.511 52.381 0.00 0.00 45.24 4.44
274 280 0.043485 TCTAGGGCATGGTGGTGGTA 59.957 55.000 0.00 0.00 0.00 3.25
318 324 2.170166 CATGTATTGTGTTGGCTGGGT 58.830 47.619 0.00 0.00 0.00 4.51
322 328 5.564651 GCAACTAACATGTATTGTGTTGGCT 60.565 40.000 20.32 0.00 40.22 4.75
363 377 9.372369 ACAAAAACTATTAGAGAATCGAAGGAG 57.628 33.333 0.00 0.00 42.67 3.69
463 477 9.079833 GCTAATGAAATTGCATATAATTGCGAT 57.920 29.630 0.00 0.00 46.44 4.58
518 532 6.648192 AGATTCCAAAACACAATTTTGACCA 58.352 32.000 12.52 0.00 40.73 4.02
564 578 6.867662 AGATTGGTCAAAAACTGTACTCTG 57.132 37.500 0.00 0.00 0.00 3.35
566 580 9.052759 TCTTTAGATTGGTCAAAAACTGTACTC 57.947 33.333 0.00 0.00 0.00 2.59
573 590 8.490355 CATGCTTTCTTTAGATTGGTCAAAAAC 58.510 33.333 0.00 0.00 0.00 2.43
659 677 3.755378 AGGTGCTCACATTGAAGATTCAC 59.245 43.478 2.21 0.61 36.83 3.18
670 688 2.880890 GTTTGAGTGAAGGTGCTCACAT 59.119 45.455 6.59 0.00 46.81 3.21
682 700 4.623932 AGGTGCTGAATAGTTTGAGTGA 57.376 40.909 0.00 0.00 0.00 3.41
708 726 7.819415 CACGAAATCAATTATATAGGGCAGAGA 59.181 37.037 0.00 0.00 0.00 3.10
721 739 6.110707 GGAGGAGGTTACACGAAATCAATTA 58.889 40.000 0.00 0.00 0.00 1.40
748 766 2.355756 CGATGGTGCTGTAGGAATTTGG 59.644 50.000 0.00 0.00 0.00 3.28
753 771 1.220749 GGCGATGGTGCTGTAGGAA 59.779 57.895 0.00 0.00 34.52 3.36
761 779 0.179163 GCTTTTACTGGCGATGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
790 814 4.024641 TCGAATTGAGATGCAATGGATTCG 60.025 41.667 20.14 20.14 46.25 3.34
817 841 7.720515 TGCAATGGATTCTTCAAAAAGGAAAAT 59.279 29.630 0.00 0.00 33.03 1.82
823 851 7.094631 TGAGATGCAATGGATTCTTCAAAAAG 58.905 34.615 0.00 0.00 0.00 2.27
866 894 2.217038 ACAGCTTTGCTCCTCGGGA 61.217 57.895 0.00 0.00 36.40 5.14
970 998 2.459710 GGGAGGGGAAAGGGAGGA 59.540 66.667 0.00 0.00 0.00 3.71
2117 4556 2.332362 GAAGCTCGTCGACCGCCATA 62.332 60.000 17.76 0.00 36.19 2.74
2159 4598 2.268920 GCAGGCGATCCAAGGTGA 59.731 61.111 0.00 0.00 33.74 4.02
2222 4661 1.413767 CCGCCGAGAACAGTTCATCG 61.414 60.000 15.85 18.31 33.31 3.84
2758 5197 1.451927 TCATCACCGGCAATGCTCC 60.452 57.895 4.82 0.00 0.00 4.70
2793 5232 2.100631 CACGGTGGTTCGCTGATCC 61.101 63.158 0.00 0.45 0.00 3.36
3070 5516 2.674380 CACCTGTGGCCAAGCTCC 60.674 66.667 7.24 0.00 0.00 4.70
3488 5945 7.364522 TGTAATCTGCATTTAGACAGTTCAC 57.635 36.000 0.00 0.00 35.37 3.18
3564 6026 1.202627 GGCATTTGGAACCAGCAACAA 60.203 47.619 6.04 0.00 0.00 2.83
3645 6107 4.115199 AATGCCCCTGCCGACCTC 62.115 66.667 0.00 0.00 36.33 3.85
3766 6228 3.492383 CGATAGCGCATCAGAAATGAACT 59.508 43.478 11.47 0.00 32.71 3.01
3919 6381 5.928264 GGATAATGCAGCCCAATTTTGTATC 59.072 40.000 0.00 0.00 0.00 2.24
3995 6464 0.462047 CATGTTGGTAGGCCCGAGAC 60.462 60.000 0.00 0.00 35.15 3.36
3996 6465 0.616395 TCATGTTGGTAGGCCCGAGA 60.616 55.000 0.00 0.00 35.15 4.04
4078 6826 2.808906 ACAGGCTTCCACCCTATTTC 57.191 50.000 0.00 0.00 0.00 2.17
4081 6829 1.992557 TGAAACAGGCTTCCACCCTAT 59.007 47.619 0.00 0.00 0.00 2.57
4087 6835 1.774254 TCCTCTTGAAACAGGCTTCCA 59.226 47.619 0.00 0.00 0.00 3.53
4089 6837 3.133141 ACTCCTCTTGAAACAGGCTTC 57.867 47.619 0.00 0.00 0.00 3.86
4132 6880 7.169158 AGTTTGGAATCACTTGAAACTTCAA 57.831 32.000 4.87 4.87 44.31 2.69
4133 6881 6.773976 AGTTTGGAATCACTTGAAACTTCA 57.226 33.333 0.00 0.00 34.03 3.02
4134 6882 6.858478 GCTAGTTTGGAATCACTTGAAACTTC 59.142 38.462 0.00 0.00 37.83 3.01
4135 6883 6.547510 AGCTAGTTTGGAATCACTTGAAACTT 59.452 34.615 0.00 0.00 37.83 2.66
4136 6884 6.064717 AGCTAGTTTGGAATCACTTGAAACT 58.935 36.000 0.00 0.00 39.54 2.66
4137 6885 6.319141 AGCTAGTTTGGAATCACTTGAAAC 57.681 37.500 0.00 0.00 0.00 2.78
4138 6886 5.473504 GGAGCTAGTTTGGAATCACTTGAAA 59.526 40.000 0.00 0.00 0.00 2.69
4188 8263 1.314730 CGACATATTTTTCCCCGGGG 58.685 55.000 35.80 35.80 0.00 5.73
4192 8267 3.011818 ACGAACCGACATATTTTTCCCC 58.988 45.455 0.00 0.00 0.00 4.81
4193 8268 4.393990 AGAACGAACCGACATATTTTTCCC 59.606 41.667 0.00 0.00 0.00 3.97
4214 8289 7.837689 TGTTACTAGATTAGGCTGTTAGGAAGA 59.162 37.037 0.00 0.00 0.00 2.87
4217 8292 6.893554 TGTGTTACTAGATTAGGCTGTTAGGA 59.106 38.462 0.00 0.00 0.00 2.94
4237 8312 3.243771 CGGAGGAAGTACAAGTCTGTGTT 60.244 47.826 0.00 0.00 36.96 3.32
4304 8381 6.069673 TCCCTCCACAAAGAAATATAAGAGCA 60.070 38.462 0.00 0.00 0.00 4.26
4321 8398 2.108970 CCAAGGTAGTACTCCCTCCAC 58.891 57.143 7.57 0.00 0.00 4.02
4337 8414 2.882761 CCTCATACCATGCATGTCCAAG 59.117 50.000 24.58 11.70 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.