Multiple sequence alignment - TraesCS5A01G099700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G099700 chr5A 100.000 3644 0 0 1 3644 142848299 142844656 0.000000e+00 6730.0
1 TraesCS5A01G099700 chr5B 94.534 1976 87 16 863 2824 140736701 140734733 0.000000e+00 3031.0
2 TraesCS5A01G099700 chr5B 86.247 778 98 6 2841 3616 554488207 554487437 0.000000e+00 835.0
3 TraesCS5A01G099700 chr5B 81.297 802 146 4 2822 3621 8878167 8878966 0.000000e+00 647.0
4 TraesCS5A01G099700 chr5B 93.860 114 5 2 863 976 140741767 140741656 1.740000e-38 171.0
5 TraesCS5A01G099700 chr5B 88.000 75 9 0 753 827 142517303 142517377 5.010000e-14 89.8
6 TraesCS5A01G099700 chr5D 95.399 1891 71 9 944 2824 127260278 127258394 0.000000e+00 2996.0
7 TraesCS5A01G099700 chr5D 90.989 799 65 5 2822 3616 380622688 380621893 0.000000e+00 1070.0
8 TraesCS5A01G099700 chr5D 91.379 116 8 2 861 976 127263351 127263238 1.350000e-34 158.0
9 TraesCS5A01G099700 chr2D 87.836 707 73 11 20 716 608779822 608780525 0.000000e+00 817.0
10 TraesCS5A01G099700 chr1D 87.092 705 78 11 22 715 302882205 302882907 0.000000e+00 785.0
11 TraesCS5A01G099700 chr1D 86.742 709 78 11 20 719 274262598 274263299 0.000000e+00 774.0
12 TraesCS5A01G099700 chr1D 83.544 79 12 1 749 827 283476711 283476788 5.050000e-09 73.1
13 TraesCS5A01G099700 chr3D 86.506 704 86 8 20 715 272533163 272533865 0.000000e+00 765.0
14 TraesCS5A01G099700 chr3D 85.552 706 92 7 20 716 103610849 103611553 0.000000e+00 730.0
15 TraesCS5A01G099700 chr3D 82.360 788 136 3 2821 3606 213674088 213674874 0.000000e+00 682.0
16 TraesCS5A01G099700 chr3D 86.607 112 14 1 715 826 464665237 464665347 4.940000e-24 122.0
17 TraesCS5A01G099700 chr4D 86.402 706 86 7 20 716 96914667 96913963 0.000000e+00 763.0
18 TraesCS5A01G099700 chr4D 81.625 800 139 5 2823 3621 118842655 118841863 0.000000e+00 656.0
19 TraesCS5A01G099700 chr1A 85.815 712 90 9 20 721 377495112 377495822 0.000000e+00 745.0
20 TraesCS5A01G099700 chr7B 85.511 704 92 10 20 715 468426933 468427634 0.000000e+00 726.0
21 TraesCS5A01G099700 chr2B 82.571 809 135 6 2814 3621 382562646 382563449 0.000000e+00 708.0
22 TraesCS5A01G099700 chr2B 81.807 808 141 6 2818 3621 593650600 593651405 0.000000e+00 673.0
23 TraesCS5A01G099700 chr7D 84.951 711 92 11 20 721 84353198 84352494 0.000000e+00 706.0
24 TraesCS5A01G099700 chr4B 81.943 803 140 5 2821 3621 613000827 613000028 0.000000e+00 675.0
25 TraesCS5A01G099700 chr4B 89.916 119 11 1 715 833 48590810 48590693 6.300000e-33 152.0
26 TraesCS5A01G099700 chr7A 81.694 803 138 9 2822 3621 223792744 223791948 0.000000e+00 660.0
27 TraesCS5A01G099700 chr6A 88.991 109 11 1 715 823 78475043 78475150 2.280000e-27 134.0
28 TraesCS5A01G099700 chr6B 83.929 112 14 4 711 820 482890656 482890765 1.790000e-18 104.0
29 TraesCS5A01G099700 chr6B 80.357 112 16 5 714 823 695539821 695539928 3.020000e-11 80.5
30 TraesCS5A01G099700 chr6D 82.456 114 17 3 715 827 378012454 378012343 3.000000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G099700 chr5A 142844656 142848299 3643 True 6730 6730 100.000 1 3644 1 chr5A.!!$R1 3643
1 TraesCS5A01G099700 chr5B 140734733 140736701 1968 True 3031 3031 94.534 863 2824 1 chr5B.!!$R1 1961
2 TraesCS5A01G099700 chr5B 554487437 554488207 770 True 835 835 86.247 2841 3616 1 chr5B.!!$R3 775
3 TraesCS5A01G099700 chr5B 8878167 8878966 799 False 647 647 81.297 2822 3621 1 chr5B.!!$F1 799
4 TraesCS5A01G099700 chr5D 127258394 127263351 4957 True 1577 2996 93.389 861 2824 2 chr5D.!!$R2 1963
5 TraesCS5A01G099700 chr5D 380621893 380622688 795 True 1070 1070 90.989 2822 3616 1 chr5D.!!$R1 794
6 TraesCS5A01G099700 chr2D 608779822 608780525 703 False 817 817 87.836 20 716 1 chr2D.!!$F1 696
7 TraesCS5A01G099700 chr1D 302882205 302882907 702 False 785 785 87.092 22 715 1 chr1D.!!$F3 693
8 TraesCS5A01G099700 chr1D 274262598 274263299 701 False 774 774 86.742 20 719 1 chr1D.!!$F1 699
9 TraesCS5A01G099700 chr3D 272533163 272533865 702 False 765 765 86.506 20 715 1 chr3D.!!$F3 695
10 TraesCS5A01G099700 chr3D 103610849 103611553 704 False 730 730 85.552 20 716 1 chr3D.!!$F1 696
11 TraesCS5A01G099700 chr3D 213674088 213674874 786 False 682 682 82.360 2821 3606 1 chr3D.!!$F2 785
12 TraesCS5A01G099700 chr4D 96913963 96914667 704 True 763 763 86.402 20 716 1 chr4D.!!$R1 696
13 TraesCS5A01G099700 chr4D 118841863 118842655 792 True 656 656 81.625 2823 3621 1 chr4D.!!$R2 798
14 TraesCS5A01G099700 chr1A 377495112 377495822 710 False 745 745 85.815 20 721 1 chr1A.!!$F1 701
15 TraesCS5A01G099700 chr7B 468426933 468427634 701 False 726 726 85.511 20 715 1 chr7B.!!$F1 695
16 TraesCS5A01G099700 chr2B 382562646 382563449 803 False 708 708 82.571 2814 3621 1 chr2B.!!$F1 807
17 TraesCS5A01G099700 chr2B 593650600 593651405 805 False 673 673 81.807 2818 3621 1 chr2B.!!$F2 803
18 TraesCS5A01G099700 chr7D 84352494 84353198 704 True 706 706 84.951 20 721 1 chr7D.!!$R1 701
19 TraesCS5A01G099700 chr4B 613000028 613000827 799 True 675 675 81.943 2821 3621 1 chr4B.!!$R2 800
20 TraesCS5A01G099700 chr7A 223791948 223792744 796 True 660 660 81.694 2822 3621 1 chr7A.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 774 0.318275 TTCACCGTCATTTTTGCGCC 60.318 50.0 4.18 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2673 4820 0.463295 AAGCATCACATCCTGGAGCG 60.463 55.0 1.52 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.744741 GCTCCAAGCTCAAAGACCTTAC 59.255 50.000 0.00 0.00 38.45 2.34
43 44 1.699634 AGCTCAAAGACCTTACAGGCA 59.300 47.619 0.00 0.00 39.63 4.75
45 46 2.551071 GCTCAAAGACCTTACAGGCACT 60.551 50.000 0.00 0.00 39.63 4.40
53 54 1.683011 CCTTACAGGCACTTCATGGGG 60.683 57.143 0.00 0.00 34.60 4.96
55 56 1.072266 TACAGGCACTTCATGGGGTT 58.928 50.000 0.00 0.00 34.60 4.11
91 92 1.372683 GTTCTGGAGGCAGAGCACA 59.627 57.895 0.00 0.00 33.45 4.57
135 141 2.897326 ACTGCCCCTTATTTTTCACACC 59.103 45.455 0.00 0.00 0.00 4.16
155 161 1.671850 CGACAACCATTGCCTACTCGT 60.672 52.381 0.00 0.00 0.00 4.18
248 254 7.928167 TCCAGAACTATAACTAGATGCAACATG 59.072 37.037 0.00 0.00 0.00 3.21
269 275 2.866085 CTTCTCCTTCGGGCTGGCAG 62.866 65.000 10.94 10.94 34.44 4.85
310 316 1.298713 CGGTGAGCCTCTCGATTCG 60.299 63.158 0.00 0.00 32.35 3.34
352 359 0.965866 CCAGGACGTAGAGGCAGTCA 60.966 60.000 0.00 0.00 36.68 3.41
421 432 4.089757 AGGAAGAGGGGCGGCCTA 62.090 66.667 28.80 0.00 0.00 3.93
515 526 1.071019 CAAGTCCATCGACGTCCACG 61.071 60.000 10.58 0.00 44.28 4.94
524 535 3.916392 GACGTCCACGCTGACCTGG 62.916 68.421 3.51 0.00 44.43 4.45
621 633 2.152016 GGCTAGGGTGTTGAGTTTGTC 58.848 52.381 0.00 0.00 0.00 3.18
631 643 0.821301 TGAGTTTGTCGCCATGGCAA 60.821 50.000 34.93 17.03 42.06 4.52
706 721 2.110901 TGTTGTTGGTTACCGTGTGT 57.889 45.000 0.00 0.00 0.00 3.72
716 731 3.131577 GGTTACCGTGTGTATGATCCTGA 59.868 47.826 0.00 0.00 0.00 3.86
717 732 4.202223 GGTTACCGTGTGTATGATCCTGAT 60.202 45.833 0.00 0.00 0.00 2.90
718 733 3.459232 ACCGTGTGTATGATCCTGATG 57.541 47.619 0.00 0.00 0.00 3.07
719 734 3.031013 ACCGTGTGTATGATCCTGATGA 58.969 45.455 0.00 0.00 0.00 2.92
720 735 3.181475 ACCGTGTGTATGATCCTGATGAC 60.181 47.826 0.00 0.00 0.00 3.06
722 737 4.294232 CGTGTGTATGATCCTGATGACTC 58.706 47.826 0.00 0.00 0.00 3.36
723 738 4.626042 GTGTGTATGATCCTGATGACTCC 58.374 47.826 0.00 0.00 0.00 3.85
724 739 4.100035 GTGTGTATGATCCTGATGACTCCA 59.900 45.833 0.00 0.00 0.00 3.86
727 742 6.126681 TGTGTATGATCCTGATGACTCCAAAT 60.127 38.462 0.00 0.00 0.00 2.32
729 744 7.933577 GTGTATGATCCTGATGACTCCAAATTA 59.066 37.037 0.00 0.00 0.00 1.40
730 745 8.663167 TGTATGATCCTGATGACTCCAAATTAT 58.337 33.333 0.00 0.00 0.00 1.28
731 746 7.997773 ATGATCCTGATGACTCCAAATTATG 57.002 36.000 0.00 0.00 0.00 1.90
738 753 8.910944 CCTGATGACTCCAAATTATGAGATTTT 58.089 33.333 10.27 0.00 0.00 1.82
758 773 1.482278 TTTCACCGTCATTTTTGCGC 58.518 45.000 0.00 0.00 0.00 6.09
759 774 0.318275 TTCACCGTCATTTTTGCGCC 60.318 50.000 4.18 0.00 0.00 6.53
760 775 1.169661 TCACCGTCATTTTTGCGCCT 61.170 50.000 4.18 0.00 0.00 5.52
762 777 0.519961 ACCGTCATTTTTGCGCCTAC 59.480 50.000 4.18 0.00 0.00 3.18
763 778 0.802494 CCGTCATTTTTGCGCCTACT 59.198 50.000 4.18 0.00 0.00 2.57
764 779 2.004017 CCGTCATTTTTGCGCCTACTA 58.996 47.619 4.18 0.00 0.00 1.82
765 780 2.030457 CCGTCATTTTTGCGCCTACTAG 59.970 50.000 4.18 0.00 0.00 2.57
766 781 2.030457 CGTCATTTTTGCGCCTACTAGG 59.970 50.000 4.18 0.00 38.80 3.02
767 782 3.007635 GTCATTTTTGCGCCTACTAGGT 58.992 45.455 4.18 0.00 37.80 3.08
768 783 4.186159 GTCATTTTTGCGCCTACTAGGTA 58.814 43.478 4.18 0.00 37.80 3.08
769 784 4.270325 GTCATTTTTGCGCCTACTAGGTAG 59.730 45.833 4.18 0.00 37.80 3.18
789 804 8.575649 AGGTAGGATTTGTGAAATTTTATCGT 57.424 30.769 0.00 0.00 0.00 3.73
790 805 8.458843 AGGTAGGATTTGTGAAATTTTATCGTG 58.541 33.333 0.00 0.00 0.00 4.35
791 806 8.241367 GGTAGGATTTGTGAAATTTTATCGTGT 58.759 33.333 0.00 0.00 0.00 4.49
792 807 9.620660 GTAGGATTTGTGAAATTTTATCGTGTT 57.379 29.630 0.00 0.00 0.00 3.32
793 808 8.742554 AGGATTTGTGAAATTTTATCGTGTTC 57.257 30.769 0.00 0.00 0.00 3.18
794 809 8.356657 AGGATTTGTGAAATTTTATCGTGTTCA 58.643 29.630 0.00 0.00 0.00 3.18
795 810 8.424731 GGATTTGTGAAATTTTATCGTGTTCAC 58.575 33.333 7.68 7.68 45.28 3.18
797 812 5.401956 GTGAAATTTTATCGTGTTCACGC 57.598 39.130 18.63 0.00 38.87 5.34
798 813 4.907010 GTGAAATTTTATCGTGTTCACGCA 59.093 37.500 18.63 9.49 38.87 5.24
802 817 3.781341 TTTATCGTGTTCACGCACTTC 57.219 42.857 18.63 0.00 37.24 3.01
803 818 2.717580 TATCGTGTTCACGCACTTCT 57.282 45.000 18.63 3.90 37.24 2.85
804 819 1.865865 ATCGTGTTCACGCACTTCTT 58.134 45.000 18.63 0.00 37.24 2.52
805 820 1.647346 TCGTGTTCACGCACTTCTTT 58.353 45.000 18.63 0.00 37.24 2.52
806 821 2.004017 TCGTGTTCACGCACTTCTTTT 58.996 42.857 18.63 0.00 37.24 2.27
807 822 2.417239 TCGTGTTCACGCACTTCTTTTT 59.583 40.909 18.63 0.00 37.24 1.94
808 823 2.525891 CGTGTTCACGCACTTCTTTTTG 59.474 45.455 12.19 0.00 37.24 2.44
809 824 3.498082 GTGTTCACGCACTTCTTTTTGT 58.502 40.909 0.00 0.00 36.51 2.83
810 825 3.917985 GTGTTCACGCACTTCTTTTTGTT 59.082 39.130 0.00 0.00 36.51 2.83
811 826 3.917380 TGTTCACGCACTTCTTTTTGTTG 59.083 39.130 0.00 0.00 0.00 3.33
812 827 4.162812 GTTCACGCACTTCTTTTTGTTGA 58.837 39.130 0.00 0.00 0.00 3.18
813 828 4.630894 TCACGCACTTCTTTTTGTTGAT 57.369 36.364 0.00 0.00 0.00 2.57
814 829 5.743026 TCACGCACTTCTTTTTGTTGATA 57.257 34.783 0.00 0.00 0.00 2.15
816 831 6.734137 TCACGCACTTCTTTTTGTTGATAAT 58.266 32.000 0.00 0.00 0.00 1.28
818 833 6.088085 CACGCACTTCTTTTTGTTGATAATCC 59.912 38.462 0.00 0.00 0.00 3.01
819 834 6.016276 ACGCACTTCTTTTTGTTGATAATCCT 60.016 34.615 0.00 0.00 0.00 3.24
820 835 6.863126 CGCACTTCTTTTTGTTGATAATCCTT 59.137 34.615 0.00 0.00 0.00 3.36
821 836 7.061094 CGCACTTCTTTTTGTTGATAATCCTTC 59.939 37.037 0.00 0.00 0.00 3.46
822 837 7.867403 GCACTTCTTTTTGTTGATAATCCTTCA 59.133 33.333 0.00 0.00 0.00 3.02
823 838 9.918630 CACTTCTTTTTGTTGATAATCCTTCAT 57.081 29.630 0.00 0.00 0.00 2.57
824 839 9.918630 ACTTCTTTTTGTTGATAATCCTTCATG 57.081 29.630 0.00 0.00 0.00 3.07
825 840 9.918630 CTTCTTTTTGTTGATAATCCTTCATGT 57.081 29.630 0.00 0.00 0.00 3.21
826 841 9.695526 TTCTTTTTGTTGATAATCCTTCATGTG 57.304 29.630 0.00 0.00 0.00 3.21
828 843 7.773489 TTTTGTTGATAATCCTTCATGTGGA 57.227 32.000 11.41 11.41 38.06 4.02
829 844 7.395190 TTTGTTGATAATCCTTCATGTGGAG 57.605 36.000 13.70 2.49 36.99 3.86
830 845 6.312141 TGTTGATAATCCTTCATGTGGAGA 57.688 37.500 13.70 6.78 36.99 3.71
831 846 6.903516 TGTTGATAATCCTTCATGTGGAGAT 58.096 36.000 13.70 10.17 36.99 2.75
832 847 7.348815 TGTTGATAATCCTTCATGTGGAGATT 58.651 34.615 13.70 10.56 36.99 2.40
833 848 7.500227 TGTTGATAATCCTTCATGTGGAGATTC 59.500 37.037 13.70 10.57 36.99 2.52
835 850 7.752638 TGATAATCCTTCATGTGGAGATTCAT 58.247 34.615 13.70 4.93 36.99 2.57
838 853 5.641789 TCCTTCATGTGGAGATTCATGAT 57.358 39.130 0.00 0.00 46.03 2.45
839 854 5.618236 TCCTTCATGTGGAGATTCATGATC 58.382 41.667 0.00 0.00 46.03 2.92
840 855 4.760715 CCTTCATGTGGAGATTCATGATCC 59.239 45.833 6.86 6.86 46.03 3.36
841 856 5.456330 CCTTCATGTGGAGATTCATGATCCT 60.456 44.000 13.67 6.29 46.03 3.24
843 858 4.657039 TCATGTGGAGATTCATGATCCTGA 59.343 41.667 13.67 7.50 43.29 3.86
844 859 5.309806 TCATGTGGAGATTCATGATCCTGAT 59.690 40.000 13.67 4.52 43.29 2.90
845 860 5.641789 TGTGGAGATTCATGATCCTGATT 57.358 39.130 13.67 0.00 35.21 2.57
846 861 5.618236 TGTGGAGATTCATGATCCTGATTC 58.382 41.667 13.67 12.38 35.21 2.52
848 863 5.701750 GTGGAGATTCATGATCCTGATTCAG 59.298 44.000 18.86 6.70 35.21 3.02
850 865 5.933463 GGAGATTCATGATCCTGATTCAGAC 59.067 44.000 15.36 6.84 35.21 3.51
851 866 6.464039 GGAGATTCATGATCCTGATTCAGACA 60.464 42.308 15.36 11.74 35.21 3.41
853 868 5.688814 TTCATGATCCTGATTCAGACACT 57.311 39.130 15.36 0.00 32.44 3.55
855 870 6.154203 TCATGATCCTGATTCAGACACTAC 57.846 41.667 15.36 1.79 32.44 2.73
856 871 5.658190 TCATGATCCTGATTCAGACACTACA 59.342 40.000 15.36 6.78 32.44 2.74
857 872 6.155049 TCATGATCCTGATTCAGACACTACAA 59.845 38.462 15.36 0.00 32.44 2.41
858 873 6.358974 TGATCCTGATTCAGACACTACAAA 57.641 37.500 15.36 0.00 32.44 2.83
859 874 6.401394 TGATCCTGATTCAGACACTACAAAG 58.599 40.000 15.36 0.00 32.44 2.77
860 875 4.569943 TCCTGATTCAGACACTACAAAGC 58.430 43.478 15.36 0.00 32.44 3.51
861 876 4.040339 TCCTGATTCAGACACTACAAAGCA 59.960 41.667 15.36 0.00 32.44 3.91
862 877 4.153117 CCTGATTCAGACACTACAAAGCAC 59.847 45.833 15.36 0.00 32.44 4.40
863 878 4.065088 TGATTCAGACACTACAAAGCACC 58.935 43.478 0.00 0.00 0.00 5.01
864 879 2.543777 TCAGACACTACAAAGCACCC 57.456 50.000 0.00 0.00 0.00 4.61
865 880 2.047061 TCAGACACTACAAAGCACCCT 58.953 47.619 0.00 0.00 0.00 4.34
866 881 2.438021 TCAGACACTACAAAGCACCCTT 59.562 45.455 0.00 0.00 0.00 3.95
867 882 3.118038 TCAGACACTACAAAGCACCCTTT 60.118 43.478 0.00 0.00 41.86 3.11
874 3004 6.016276 ACACTACAAAGCACCCTTTTTCTATG 60.016 38.462 0.00 0.00 39.20 2.23
904 3034 3.090532 GGGCCTCCCAGTACCAGG 61.091 72.222 0.84 0.00 44.65 4.45
913 3046 1.207791 CCAGTACCAGGCCTGAGAAT 58.792 55.000 34.91 17.31 0.00 2.40
915 3048 2.771943 CCAGTACCAGGCCTGAGAATTA 59.228 50.000 34.91 13.32 0.00 1.40
916 3049 3.181461 CCAGTACCAGGCCTGAGAATTAG 60.181 52.174 34.91 17.47 0.00 1.73
917 3050 3.706594 CAGTACCAGGCCTGAGAATTAGA 59.293 47.826 34.91 6.55 0.00 2.10
919 3052 2.839228 ACCAGGCCTGAGAATTAGACT 58.161 47.619 34.91 2.80 0.00 3.24
920 3053 3.185455 ACCAGGCCTGAGAATTAGACTT 58.815 45.455 34.91 2.08 0.00 3.01
921 3054 3.589288 ACCAGGCCTGAGAATTAGACTTT 59.411 43.478 34.91 1.36 0.00 2.66
922 3055 4.043435 ACCAGGCCTGAGAATTAGACTTTT 59.957 41.667 34.91 0.86 0.00 2.27
923 3056 5.012893 CCAGGCCTGAGAATTAGACTTTTT 58.987 41.667 34.91 0.00 0.00 1.94
960 3093 1.653151 CTAGCCCGTTAGTTCCAAGC 58.347 55.000 0.00 0.00 0.00 4.01
972 3105 2.270352 TTCCAAGCGAACAGGACATT 57.730 45.000 0.00 0.00 0.00 2.71
973 3106 2.270352 TCCAAGCGAACAGGACATTT 57.730 45.000 0.00 0.00 0.00 2.32
974 3107 2.582052 TCCAAGCGAACAGGACATTTT 58.418 42.857 0.00 0.00 0.00 1.82
1015 3152 4.933064 CGATGCTCTCCCGCCGAC 62.933 72.222 0.00 0.00 0.00 4.79
1081 3218 2.342279 CGGCGTCAACAGGAGGAA 59.658 61.111 0.00 0.00 33.18 3.36
1082 3219 2.027625 CGGCGTCAACAGGAGGAAC 61.028 63.158 0.00 0.00 33.18 3.62
1089 3226 0.326264 CAACAGGAGGAACTGGAGGG 59.674 60.000 0.00 0.00 41.55 4.30
1100 3237 2.678934 TGGAGGGTCGAGTTCCGG 60.679 66.667 0.00 0.00 39.14 5.14
1101 3238 4.144703 GGAGGGTCGAGTTCCGGC 62.145 72.222 0.00 0.00 43.26 6.13
1146 3283 2.458951 CGTCTGCTGAAGCTCATCTAC 58.541 52.381 3.61 0.00 42.66 2.59
1416 3561 3.492311 GAGGACGCAGCCGGAGATC 62.492 68.421 5.05 0.00 39.22 2.75
1638 3783 4.007644 CTCACCTGCGCACTCCCA 62.008 66.667 5.66 0.00 0.00 4.37
1773 3918 1.205893 CTCACCTACTGCTCCAGGAAC 59.794 57.143 5.25 0.00 35.51 3.62
1962 4107 1.319541 GAGCCGCCTACTCATCACTA 58.680 55.000 0.00 0.00 34.18 2.74
2163 4308 4.772100 GGAACAAAAGATTCAAGGATCCCA 59.228 41.667 8.55 0.00 0.00 4.37
2199 4344 7.887996 TTCATTTTACATCAAGAATGGCAAC 57.112 32.000 0.00 0.00 39.90 4.17
2227 4372 5.629125 AGAAGGCAGAGAGTTTTCTTCAAT 58.371 37.500 0.00 0.00 34.70 2.57
2277 4422 5.698545 CAGCTATAGCACTTGGGAGTTATTC 59.301 44.000 26.07 0.00 45.16 1.75
2289 4434 3.691118 GGGAGTTATTCGTTTGGGGTTAC 59.309 47.826 0.00 0.00 0.00 2.50
2312 4457 2.504244 CAACGACGAGAGGACGGC 60.504 66.667 0.00 0.00 38.77 5.68
2325 4470 1.353022 AGGACGGCCAAAGTTATGGAA 59.647 47.619 11.69 0.00 43.54 3.53
2517 4662 1.065358 GCACGTACGCTAAAGCTGAA 58.935 50.000 16.72 0.00 39.32 3.02
2673 4820 8.989980 GTAATAATAGGCTGTGTTAGATTGGAC 58.010 37.037 0.00 0.00 0.00 4.02
2690 4837 1.153289 ACGCTCCAGGATGTGATGC 60.153 57.895 0.00 0.00 0.00 3.91
2771 4919 6.259167 TGGCAGGCATAAACTTAACTAATACG 59.741 38.462 0.00 0.00 0.00 3.06
2789 4937 1.067776 ACGTAGCTTCCGTTCTTGGAG 60.068 52.381 5.40 0.00 39.72 3.86
2808 4956 9.793259 TCTTGGAGTTGAATAATTAACAGTCTT 57.207 29.630 0.00 0.00 0.00 3.01
3017 5169 5.671493 ACTAATAAGAGGGAAATCACACGG 58.329 41.667 0.00 0.00 0.00 4.94
3105 5260 7.984422 TGTGTCAATCACTTTCATATTGTCT 57.016 32.000 0.00 0.00 46.27 3.41
3131 5286 7.549134 TGAGTTAATAACAAGACGATTGCATCT 59.451 33.333 5.89 0.00 0.00 2.90
3173 5328 4.322057 AGCCAAATCTTAGGGTCAATGT 57.678 40.909 0.00 0.00 0.00 2.71
3198 5353 2.624364 TGCTGTCAAAACATGAGCACAT 59.376 40.909 0.00 0.00 39.19 3.21
3287 5445 2.507058 TGCCTCTAAGCAGACCATGATT 59.493 45.455 0.00 0.00 41.36 2.57
3300 5460 5.124936 CAGACCATGATTGAAAGAAGCATCA 59.875 40.000 0.00 0.00 0.00 3.07
3322 5482 6.872920 TCAAACATTCAGCTTAACAAAACCT 58.127 32.000 0.00 0.00 0.00 3.50
3346 5506 0.691078 GAGGTCTGCTACATCCCCCA 60.691 60.000 0.00 0.00 32.66 4.96
3359 5519 7.092354 TGCTACATCCCCCAGTTTTACTAATTA 60.092 37.037 0.00 0.00 0.00 1.40
3367 5527 6.880529 CCCCAGTTTTACTAATTACCTTCGAA 59.119 38.462 0.00 0.00 0.00 3.71
3461 5621 3.325870 TCTTCATGAACCAGCTTACGTG 58.674 45.455 3.38 0.00 0.00 4.49
3609 5770 2.200373 ACGCAAGCTTTCCTAACCAT 57.800 45.000 0.00 0.00 45.62 3.55
3621 5782 6.073548 GCTTTCCTAACCATCTCATACAATCG 60.074 42.308 0.00 0.00 0.00 3.34
3622 5783 4.883083 TCCTAACCATCTCATACAATCGC 58.117 43.478 0.00 0.00 0.00 4.58
3623 5784 4.588951 TCCTAACCATCTCATACAATCGCT 59.411 41.667 0.00 0.00 0.00 4.93
3624 5785 5.070446 TCCTAACCATCTCATACAATCGCTT 59.930 40.000 0.00 0.00 0.00 4.68
3625 5786 5.178252 CCTAACCATCTCATACAATCGCTTG 59.822 44.000 0.00 0.00 38.39 4.01
3626 5787 2.874701 ACCATCTCATACAATCGCTTGC 59.125 45.455 0.00 0.00 35.69 4.01
3627 5788 2.874086 CCATCTCATACAATCGCTTGCA 59.126 45.455 0.00 0.00 35.69 4.08
3628 5789 3.303593 CCATCTCATACAATCGCTTGCAC 60.304 47.826 0.00 0.00 35.69 4.57
3629 5790 1.926510 TCTCATACAATCGCTTGCACG 59.073 47.619 0.00 0.00 35.69 5.34
3636 5797 4.352386 TCGCTTGCACGATCAACA 57.648 50.000 0.00 0.00 37.09 3.33
3637 5798 2.611012 TCGCTTGCACGATCAACAA 58.389 47.368 0.00 0.00 37.09 2.83
3638 5799 0.234625 TCGCTTGCACGATCAACAAC 59.765 50.000 0.00 0.00 37.09 3.32
3639 5800 1.054348 CGCTTGCACGATCAACAACG 61.054 55.000 0.00 0.00 34.06 4.10
3640 5801 1.330080 GCTTGCACGATCAACAACGC 61.330 55.000 0.00 0.00 0.00 4.84
3641 5802 0.041400 CTTGCACGATCAACAACGCA 60.041 50.000 0.00 0.00 0.00 5.24
3642 5803 0.378610 TTGCACGATCAACAACGCAA 59.621 45.000 0.00 0.00 37.05 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.445095 CTTGGAGCTCATCGAGGGG 59.555 63.158 17.19 0.00 0.00 4.79
7 8 1.227497 GCTTGGAGCTCATCGAGGG 60.227 63.158 17.19 0.00 38.45 4.30
8 9 4.434685 GCTTGGAGCTCATCGAGG 57.565 61.111 17.19 0.00 38.45 4.63
38 39 1.281867 TCTAACCCCATGAAGTGCCTG 59.718 52.381 0.00 0.00 0.00 4.85
43 44 4.398319 CAAGTGTTCTAACCCCATGAAGT 58.602 43.478 0.00 0.00 0.00 3.01
45 46 3.153919 GCAAGTGTTCTAACCCCATGAA 58.846 45.455 0.00 0.00 0.00 2.57
53 54 3.243336 ACGATCGAGCAAGTGTTCTAAC 58.757 45.455 24.34 0.00 0.00 2.34
55 56 3.190744 AGAACGATCGAGCAAGTGTTCTA 59.809 43.478 24.34 0.00 42.88 2.10
91 92 0.179084 CTAACCGTGACATGGCCGAT 60.179 55.000 13.93 0.79 0.00 4.18
135 141 0.999406 CGAGTAGGCAATGGTTGTCG 59.001 55.000 0.00 0.00 41.01 4.35
155 161 8.736244 AGAAAGAAGCACAAAAGTTGTTAGTTA 58.264 29.630 0.00 0.00 43.23 2.24
269 275 1.737816 CCATGGCATGCTTACTGGC 59.262 57.895 22.02 0.00 39.47 4.85
310 316 4.424711 TGGGAACTCCGCATGGGC 62.425 66.667 3.80 0.00 38.76 5.36
361 368 6.071952 GGACATTCTCAAAATGGCTTGTTAGA 60.072 38.462 3.80 0.00 35.98 2.10
374 381 2.549992 CGACCACAGGGACATTCTCAAA 60.550 50.000 0.00 0.00 38.05 2.69
380 389 1.762957 CCTATCGACCACAGGGACATT 59.237 52.381 0.00 0.00 38.05 2.71
421 432 4.360889 AGACACTGATCTCCTCCTTCATT 58.639 43.478 0.00 0.00 0.00 2.57
515 526 3.050275 GGCGTTGTCCAGGTCAGC 61.050 66.667 0.00 0.00 0.00 4.26
524 535 2.740714 GCTCCATGACGGCGTTGTC 61.741 63.158 16.19 1.23 39.37 3.18
621 633 1.737355 CTATGGGGTTTGCCATGGCG 61.737 60.000 30.87 9.35 45.51 5.69
631 643 2.043227 GCTAGAGCACTCTATGGGGTT 58.957 52.381 7.81 0.00 40.97 4.11
666 679 4.021104 ACAATCTCTAGTAGTGTGCTTGCA 60.021 41.667 0.00 0.00 0.00 4.08
706 721 8.883302 TCATAATTTGGAGTCATCAGGATCATA 58.117 33.333 0.00 0.00 0.00 2.15
738 753 1.855360 GCGCAAAAATGACGGTGAAAA 59.145 42.857 0.30 0.00 0.00 2.29
740 755 0.318275 GGCGCAAAAATGACGGTGAA 60.318 50.000 10.83 0.00 0.00 3.18
741 756 1.169661 AGGCGCAAAAATGACGGTGA 61.170 50.000 10.83 0.00 0.00 4.02
742 757 0.519519 TAGGCGCAAAAATGACGGTG 59.480 50.000 10.83 0.00 0.00 4.94
743 758 0.519961 GTAGGCGCAAAAATGACGGT 59.480 50.000 10.83 0.00 0.00 4.83
744 759 0.802494 AGTAGGCGCAAAAATGACGG 59.198 50.000 10.83 0.00 0.00 4.79
745 760 2.030457 CCTAGTAGGCGCAAAAATGACG 59.970 50.000 10.83 0.00 0.00 4.35
747 762 3.343941 ACCTAGTAGGCGCAAAAATGA 57.656 42.857 16.61 0.00 39.63 2.57
748 763 4.795970 CTACCTAGTAGGCGCAAAAATG 57.204 45.455 16.61 0.00 39.63 2.32
763 778 9.675464 ACGATAAAATTTCACAAATCCTACCTA 57.325 29.630 0.00 0.00 0.00 3.08
764 779 8.458843 CACGATAAAATTTCACAAATCCTACCT 58.541 33.333 0.00 0.00 0.00 3.08
765 780 8.241367 ACACGATAAAATTTCACAAATCCTACC 58.759 33.333 0.00 0.00 0.00 3.18
766 781 9.620660 AACACGATAAAATTTCACAAATCCTAC 57.379 29.630 0.00 0.00 0.00 3.18
767 782 9.834628 GAACACGATAAAATTTCACAAATCCTA 57.165 29.630 0.00 0.00 0.00 2.94
768 783 8.356657 TGAACACGATAAAATTTCACAAATCCT 58.643 29.630 0.00 0.00 0.00 3.24
769 784 8.424731 GTGAACACGATAAAATTTCACAAATCC 58.575 33.333 7.68 0.00 43.60 3.01
788 803 3.498082 ACAAAAAGAAGTGCGTGAACAC 58.502 40.909 0.00 0.00 41.02 3.32
789 804 3.840890 ACAAAAAGAAGTGCGTGAACA 57.159 38.095 0.00 0.00 0.00 3.18
790 805 4.162812 TCAACAAAAAGAAGTGCGTGAAC 58.837 39.130 0.00 0.00 0.00 3.18
791 806 4.427096 TCAACAAAAAGAAGTGCGTGAA 57.573 36.364 0.00 0.00 0.00 3.18
792 807 4.630894 ATCAACAAAAAGAAGTGCGTGA 57.369 36.364 0.00 0.00 0.00 4.35
793 808 6.088085 GGATTATCAACAAAAAGAAGTGCGTG 59.912 38.462 0.00 0.00 0.00 5.34
794 809 6.016276 AGGATTATCAACAAAAAGAAGTGCGT 60.016 34.615 0.00 0.00 0.00 5.24
795 810 6.381801 AGGATTATCAACAAAAAGAAGTGCG 58.618 36.000 0.00 0.00 0.00 5.34
796 811 7.867403 TGAAGGATTATCAACAAAAAGAAGTGC 59.133 33.333 0.00 0.00 0.00 4.40
797 812 9.918630 ATGAAGGATTATCAACAAAAAGAAGTG 57.081 29.630 0.00 0.00 0.00 3.16
798 813 9.918630 CATGAAGGATTATCAACAAAAAGAAGT 57.081 29.630 0.00 0.00 0.00 3.01
802 817 8.306038 TCCACATGAAGGATTATCAACAAAAAG 58.694 33.333 0.00 0.00 0.00 2.27
803 818 8.187913 TCCACATGAAGGATTATCAACAAAAA 57.812 30.769 0.00 0.00 0.00 1.94
804 819 7.669304 TCTCCACATGAAGGATTATCAACAAAA 59.331 33.333 11.16 0.00 33.99 2.44
805 820 7.174413 TCTCCACATGAAGGATTATCAACAAA 58.826 34.615 11.16 0.00 33.99 2.83
806 821 6.720309 TCTCCACATGAAGGATTATCAACAA 58.280 36.000 11.16 0.00 33.99 2.83
807 822 6.312141 TCTCCACATGAAGGATTATCAACA 57.688 37.500 11.16 0.00 33.99 3.33
808 823 7.500227 TGAATCTCCACATGAAGGATTATCAAC 59.500 37.037 11.16 6.06 33.99 3.18
809 824 7.576403 TGAATCTCCACATGAAGGATTATCAA 58.424 34.615 11.16 1.15 33.99 2.57
810 825 7.140522 TGAATCTCCACATGAAGGATTATCA 57.859 36.000 11.16 11.77 33.99 2.15
811 826 7.881751 TCATGAATCTCCACATGAAGGATTATC 59.118 37.037 11.16 9.95 46.10 1.75
812 827 7.752638 TCATGAATCTCCACATGAAGGATTAT 58.247 34.615 11.16 6.61 46.10 1.28
813 828 7.140522 TCATGAATCTCCACATGAAGGATTA 57.859 36.000 11.16 4.90 46.10 1.75
814 829 6.009908 TCATGAATCTCCACATGAAGGATT 57.990 37.500 11.16 9.05 46.10 3.01
821 836 4.969484 TCAGGATCATGAATCTCCACATG 58.031 43.478 7.78 6.06 43.31 3.21
822 837 5.844773 ATCAGGATCATGAATCTCCACAT 57.155 39.130 14.88 4.69 34.56 3.21
823 838 5.131475 TGAATCAGGATCATGAATCTCCACA 59.869 40.000 22.15 9.53 31.59 4.17
824 839 5.618236 TGAATCAGGATCATGAATCTCCAC 58.382 41.667 22.15 7.55 31.59 4.02
825 840 5.605488 TCTGAATCAGGATCATGAATCTCCA 59.395 40.000 22.15 11.66 31.59 3.86
826 841 5.933463 GTCTGAATCAGGATCATGAATCTCC 59.067 44.000 22.15 2.06 31.59 3.71
828 843 6.099990 AGTGTCTGAATCAGGATCATGAATCT 59.900 38.462 22.15 8.06 31.59 2.40
829 844 6.289834 AGTGTCTGAATCAGGATCATGAATC 58.710 40.000 14.88 15.87 31.76 2.52
830 845 6.249911 AGTGTCTGAATCAGGATCATGAAT 57.750 37.500 14.88 5.79 31.76 2.57
831 846 5.688814 AGTGTCTGAATCAGGATCATGAA 57.311 39.130 14.88 0.00 31.76 2.57
832 847 5.658190 TGTAGTGTCTGAATCAGGATCATGA 59.342 40.000 13.16 13.16 31.51 3.07
833 848 5.910614 TGTAGTGTCTGAATCAGGATCATG 58.089 41.667 10.71 0.00 31.51 3.07
835 850 6.358974 TTTGTAGTGTCTGAATCAGGATCA 57.641 37.500 10.71 5.19 31.51 2.92
838 853 4.040339 TGCTTTGTAGTGTCTGAATCAGGA 59.960 41.667 10.71 0.00 31.51 3.86
839 854 4.153117 GTGCTTTGTAGTGTCTGAATCAGG 59.847 45.833 10.71 0.00 31.51 3.86
840 855 4.153117 GGTGCTTTGTAGTGTCTGAATCAG 59.847 45.833 3.38 3.38 0.00 2.90
841 856 4.065088 GGTGCTTTGTAGTGTCTGAATCA 58.935 43.478 0.00 0.00 0.00 2.57
843 858 3.073062 AGGGTGCTTTGTAGTGTCTGAAT 59.927 43.478 0.00 0.00 0.00 2.57
844 859 2.438021 AGGGTGCTTTGTAGTGTCTGAA 59.562 45.455 0.00 0.00 0.00 3.02
845 860 2.047061 AGGGTGCTTTGTAGTGTCTGA 58.953 47.619 0.00 0.00 0.00 3.27
846 861 2.550830 AGGGTGCTTTGTAGTGTCTG 57.449 50.000 0.00 0.00 0.00 3.51
848 863 4.338400 AGAAAAAGGGTGCTTTGTAGTGTC 59.662 41.667 0.00 0.00 0.00 3.67
850 865 4.918810 AGAAAAAGGGTGCTTTGTAGTG 57.081 40.909 0.00 0.00 0.00 2.74
851 866 6.016276 CACATAGAAAAAGGGTGCTTTGTAGT 60.016 38.462 0.00 0.00 0.00 2.73
853 868 5.242838 CCACATAGAAAAAGGGTGCTTTGTA 59.757 40.000 0.00 0.00 0.00 2.41
855 870 4.559153 CCACATAGAAAAAGGGTGCTTTG 58.441 43.478 0.00 0.00 0.00 2.77
856 871 3.578282 CCCACATAGAAAAAGGGTGCTTT 59.422 43.478 0.00 0.00 34.75 3.51
857 872 3.165071 CCCACATAGAAAAAGGGTGCTT 58.835 45.455 0.00 0.00 34.75 3.91
858 873 2.807676 CCCACATAGAAAAAGGGTGCT 58.192 47.619 0.00 0.00 34.75 4.40
859 874 1.204704 GCCCACATAGAAAAAGGGTGC 59.795 52.381 0.00 0.00 41.67 5.01
860 875 1.824852 GGCCCACATAGAAAAAGGGTG 59.175 52.381 0.00 0.00 41.67 4.61
861 876 1.716503 AGGCCCACATAGAAAAAGGGT 59.283 47.619 0.00 0.00 41.67 4.34
862 877 2.102578 CAGGCCCACATAGAAAAAGGG 58.897 52.381 0.00 0.00 42.55 3.95
863 878 1.478105 GCAGGCCCACATAGAAAAAGG 59.522 52.381 0.00 0.00 0.00 3.11
864 879 1.133025 CGCAGGCCCACATAGAAAAAG 59.867 52.381 0.00 0.00 0.00 2.27
865 880 1.173043 CGCAGGCCCACATAGAAAAA 58.827 50.000 0.00 0.00 0.00 1.94
866 881 0.326595 TCGCAGGCCCACATAGAAAA 59.673 50.000 0.00 0.00 0.00 2.29
867 882 0.546122 ATCGCAGGCCCACATAGAAA 59.454 50.000 0.00 0.00 0.00 2.52
923 3056 5.512576 GGGCTAGCGAATATAGGGAGAAAAA 60.513 44.000 9.00 0.00 0.00 1.94
925 3058 3.514309 GGGCTAGCGAATATAGGGAGAAA 59.486 47.826 9.00 0.00 0.00 2.52
926 3059 3.097614 GGGCTAGCGAATATAGGGAGAA 58.902 50.000 9.00 0.00 0.00 2.87
927 3060 2.736347 GGGCTAGCGAATATAGGGAGA 58.264 52.381 9.00 0.00 0.00 3.71
928 3061 1.405821 CGGGCTAGCGAATATAGGGAG 59.594 57.143 9.00 0.00 0.00 4.30
930 3063 1.183549 ACGGGCTAGCGAATATAGGG 58.816 55.000 9.00 0.00 0.00 3.53
931 3064 3.442977 ACTAACGGGCTAGCGAATATAGG 59.557 47.826 9.00 0.00 0.00 2.57
932 3065 4.698583 ACTAACGGGCTAGCGAATATAG 57.301 45.455 9.00 9.65 0.00 1.31
933 3066 4.082571 GGAACTAACGGGCTAGCGAATATA 60.083 45.833 9.00 0.00 0.00 0.86
934 3067 3.305881 GGAACTAACGGGCTAGCGAATAT 60.306 47.826 9.00 0.00 0.00 1.28
937 3070 0.174162 GGAACTAACGGGCTAGCGAA 59.826 55.000 9.00 0.00 0.00 4.70
939 3072 0.108520 TTGGAACTAACGGGCTAGCG 60.109 55.000 9.00 0.00 0.00 4.26
940 3073 1.653151 CTTGGAACTAACGGGCTAGC 58.347 55.000 6.04 6.04 0.00 3.42
941 3074 1.653151 GCTTGGAACTAACGGGCTAG 58.347 55.000 0.00 0.00 0.00 3.42
942 3075 0.108520 CGCTTGGAACTAACGGGCTA 60.109 55.000 0.00 0.00 0.00 3.93
999 3136 2.136196 CTAGTCGGCGGGAGAGCATC 62.136 65.000 7.21 0.00 39.27 3.91
1081 3218 1.977544 CGGAACTCGACCCTCCAGT 60.978 63.158 4.13 0.00 42.43 4.00
1082 3219 2.711922 CCGGAACTCGACCCTCCAG 61.712 68.421 0.00 0.00 42.43 3.86
1129 3266 1.537776 CGGGTAGATGAGCTTCAGCAG 60.538 57.143 0.75 0.00 45.16 4.24
1197 3334 2.281208 TGGTACTTGTGCACCGCC 60.281 61.111 15.69 9.57 37.66 6.13
1198 3335 2.966309 GCTGGTACTTGTGCACCGC 61.966 63.158 15.69 2.36 37.66 5.68
1283 3427 3.105157 CAACGCGTTGGCAATGGC 61.105 61.111 37.79 16.93 39.92 4.40
1286 3430 2.354539 GTGCAACGCGTTGGCAAT 60.355 55.556 42.59 13.72 40.74 3.56
1287 3431 4.560856 GGTGCAACGCGTTGGCAA 62.561 61.111 42.59 25.07 40.74 4.52
1318 3462 4.341502 CAAACAGTTGGCGGGCGG 62.342 66.667 0.00 0.00 0.00 6.13
1328 3472 0.881118 CAGGCAATACGGCAAACAGT 59.119 50.000 0.00 0.00 44.47 3.55
1488 3633 1.000618 GGGACGTCCTCGAAGAACTTT 59.999 52.381 32.52 0.00 40.62 2.66
1626 3771 1.503542 GTTGAATGGGAGTGCGCAG 59.496 57.895 12.22 0.00 40.53 5.18
1632 3777 3.245371 ACATCATGTGGTTGAATGGGAGT 60.245 43.478 0.00 0.00 0.00 3.85
1638 3783 2.679837 GAGCGACATCATGTGGTTGAAT 59.320 45.455 0.00 0.07 0.00 2.57
1962 4107 0.673644 GGCTTGCGTACATGGTGAGT 60.674 55.000 0.00 0.00 0.00 3.41
2163 4308 7.961351 TGATGTAAAATGAAAGGATGGTGTTT 58.039 30.769 0.00 0.00 0.00 2.83
2199 4344 3.347077 AAACTCTCTGCCTTCTCCATG 57.653 47.619 0.00 0.00 0.00 3.66
2227 4372 4.350368 TGACTCCTTTCTGCACAATGTA 57.650 40.909 0.00 0.00 0.00 2.29
2277 4422 0.824182 TGCCAAGGTAACCCCAAACG 60.824 55.000 0.00 0.00 34.66 3.60
2289 4434 1.738099 CCTCTCGTCGTTGCCAAGG 60.738 63.158 0.00 0.00 0.00 3.61
2312 4457 6.773976 TCTTAAGGCATTCCATAACTTTGG 57.226 37.500 1.85 0.00 38.18 3.28
2325 4470 5.717119 CTTGACAATGCTTTCTTAAGGCAT 58.283 37.500 10.76 10.76 32.90 4.40
2517 4662 7.308408 CGTTCATCAATTATCAGAGGCATCATT 60.308 37.037 0.00 0.00 0.00 2.57
2673 4820 0.463295 AAGCATCACATCCTGGAGCG 60.463 55.000 1.52 0.00 0.00 5.03
2711 4858 9.143631 CTTCAGATTTGTAAATCCAAATGAACC 57.856 33.333 12.41 0.00 43.28 3.62
2771 4919 2.737252 CAACTCCAAGAACGGAAGCTAC 59.263 50.000 0.00 0.00 33.65 3.58
2778 4926 7.812648 TGTTAATTATTCAACTCCAAGAACGG 58.187 34.615 0.00 0.00 0.00 4.44
3105 5260 7.609760 ATGCAATCGTCTTGTTATTAACTCA 57.390 32.000 7.99 0.00 0.00 3.41
3131 5286 5.334569 GGCTTATTACTTGCACAAAAGACGA 60.335 40.000 0.00 0.00 0.00 4.20
3138 5293 6.588719 AGATTTGGCTTATTACTTGCACAA 57.411 33.333 0.00 0.00 0.00 3.33
3173 5328 3.380954 TGCTCATGTTTTGACAGCAGAAA 59.619 39.130 0.00 0.00 32.35 2.52
3191 5346 5.571784 TTGGAAGATTGATTGATGTGCTC 57.428 39.130 0.00 0.00 0.00 4.26
3198 5353 5.779260 TGGTGGAAATTGGAAGATTGATTGA 59.221 36.000 0.00 0.00 0.00 2.57
3270 5428 6.053632 TCTTTCAATCATGGTCTGCTTAGA 57.946 37.500 0.00 0.00 0.00 2.10
3287 5445 5.010314 AGCTGAATGTTTGATGCTTCTTTCA 59.990 36.000 0.88 2.94 0.00 2.69
3322 5482 4.417437 GGGGATGTAGCAGACCTCTTATA 58.583 47.826 0.00 0.00 0.00 0.98
3326 5486 0.399233 GGGGGATGTAGCAGACCTCT 60.399 60.000 0.00 0.00 0.00 3.69
3337 5497 6.218938 AGGTAATTAGTAAAACTGGGGGATGT 59.781 38.462 0.00 0.00 0.00 3.06
3346 5506 9.420551 CACTCTTCGAAGGTAATTAGTAAAACT 57.579 33.333 24.37 0.00 0.00 2.66
3359 5519 0.693049 AATGCCCACTCTTCGAAGGT 59.307 50.000 24.37 17.54 0.00 3.50
3367 5527 4.399303 GCAAACTATGTTAATGCCCACTCT 59.601 41.667 0.00 0.00 0.00 3.24
3461 5621 6.831868 ACAACTTGGTATTTATGGTGGGATAC 59.168 38.462 0.00 0.00 0.00 2.24
3609 5770 1.926510 CGTGCAAGCGATTGTATGAGA 59.073 47.619 17.29 0.00 0.00 3.27
3621 5782 1.330080 GCGTTGTTGATCGTGCAAGC 61.330 55.000 0.00 0.00 0.00 4.01
3622 5783 0.041400 TGCGTTGTTGATCGTGCAAG 60.041 50.000 0.00 0.00 0.00 4.01
3623 5784 0.378610 TTGCGTTGTTGATCGTGCAA 59.621 45.000 0.00 0.00 39.73 4.08
3624 5785 0.041400 CTTGCGTTGTTGATCGTGCA 60.041 50.000 0.00 0.00 0.00 4.57
3625 5786 2.699910 CTTGCGTTGTTGATCGTGC 58.300 52.632 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.