Multiple sequence alignment - TraesCS5A01G099100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G099100 chr5A 100.000 8262 0 0 1 8262 141076595 141068334 0.000000e+00 15258.0
1 TraesCS5A01G099100 chr5A 97.826 46 1 0 4385 4430 141072176 141072131 6.870000e-11 80.5
2 TraesCS5A01G099100 chr5A 97.826 46 1 0 4420 4465 141072211 141072166 6.870000e-11 80.5
3 TraesCS5A01G099100 chr5D 97.252 3312 75 6 4422 7730 126268893 126265595 0.000000e+00 5598.0
4 TraesCS5A01G099100 chr5D 93.905 1575 61 16 99 1650 126273294 126271732 0.000000e+00 2344.0
5 TraesCS5A01G099100 chr5D 95.511 1292 46 5 3142 4430 126270132 126268850 0.000000e+00 2054.0
6 TraesCS5A01G099100 chr5D 97.041 811 20 3 1869 2679 126271592 126270786 0.000000e+00 1362.0
7 TraesCS5A01G099100 chr5D 86.842 228 14 9 7683 7910 126265585 126265374 2.980000e-59 241.0
8 TraesCS5A01G099100 chr5D 94.656 131 2 3 1750 1875 241844078 241844208 1.820000e-46 198.0
9 TraesCS5A01G099100 chr5D 94.656 131 2 3 1749 1874 445810647 445810777 1.820000e-46 198.0
10 TraesCS5A01G099100 chr5D 87.850 107 12 1 1647 1752 126271695 126271589 3.130000e-24 124.0
11 TraesCS5A01G099100 chr5D 95.455 66 3 0 1585 1650 126269765 126269830 1.130000e-18 106.0
12 TraesCS5A01G099100 chr5D 88.235 51 5 1 8060 8109 334975320 334975370 8.960000e-05 60.2
13 TraesCS5A01G099100 chr5B 97.014 3248 81 11 4420 7658 139169440 139166200 0.000000e+00 5446.0
14 TraesCS5A01G099100 chr5B 95.697 1162 33 6 495 1650 139173606 139172456 0.000000e+00 1853.0
15 TraesCS5A01G099100 chr5B 95.197 812 17 4 3627 4430 139170192 139169395 0.000000e+00 1264.0
16 TraesCS5A01G099100 chr5B 95.155 805 29 6 1869 2672 139172316 139171521 0.000000e+00 1262.0
17 TraesCS5A01G099100 chr5B 93.333 615 29 5 2983 3595 139170795 139170191 0.000000e+00 898.0
18 TraesCS5A01G099100 chr5B 93.571 280 16 1 2710 2987 139171516 139171237 4.610000e-112 416.0
19 TraesCS5A01G099100 chr5B 88.764 178 19 1 4509 4685 582157815 582157992 5.020000e-52 217.0
20 TraesCS5A01G099100 chr5B 84.519 239 11 10 7672 7906 139163797 139163581 6.500000e-51 213.0
21 TraesCS5A01G099100 chr5B 94.030 134 2 4 1750 1877 431061997 431062130 1.820000e-46 198.0
22 TraesCS5A01G099100 chr5B 83.158 190 8 2 7906 8074 139163291 139163105 1.440000e-32 152.0
23 TraesCS5A01G099100 chr5B 87.850 107 12 1 1647 1752 139172419 139172313 3.130000e-24 124.0
24 TraesCS5A01G099100 chr5B 98.507 67 1 0 7658 7724 139163872 139163806 1.460000e-22 119.0
25 TraesCS5A01G099100 chr5B 93.151 73 4 1 1578 1650 139170272 139170343 1.130000e-18 106.0
26 TraesCS5A01G099100 chr4B 88.701 177 19 1 4509 4684 611855885 611856061 1.810000e-51 215.0
27 TraesCS5A01G099100 chr7B 87.845 181 18 4 4505 4684 505937841 505937664 8.400000e-50 209.0
28 TraesCS5A01G099100 chr7B 85.946 185 22 4 4509 4691 336193222 336193040 2.350000e-45 195.0
29 TraesCS5A01G099100 chr7B 84.783 92 10 4 8071 8162 611745443 611745530 1.140000e-13 89.8
30 TraesCS5A01G099100 chr7B 100.000 28 0 0 576 603 682581347 682581320 1.500000e-02 52.8
31 TraesCS5A01G099100 chr4D 88.824 170 17 2 4509 4677 482161466 482161634 3.020000e-49 207.0
32 TraesCS5A01G099100 chr4D 87.640 178 21 1 4509 4685 7925026 7924849 1.090000e-48 206.0
33 TraesCS5A01G099100 chr4D 94.161 137 1 5 1750 1881 36413361 36413227 1.410000e-47 202.0
34 TraesCS5A01G099100 chr4D 97.297 37 0 1 7982 8018 354548589 354548554 2.490000e-05 62.1
35 TraesCS5A01G099100 chr3D 87.709 179 21 1 4508 4685 445278963 445278785 3.020000e-49 207.0
36 TraesCS5A01G099100 chr3D 93.233 133 3 3 1750 1877 210622549 210622418 3.040000e-44 191.0
37 TraesCS5A01G099100 chr3D 91.034 145 6 4 1745 1883 283321121 283321264 1.090000e-43 189.0
38 TraesCS5A01G099100 chr2A 94.074 135 2 4 1749 1877 333746158 333746024 5.060000e-47 200.0
39 TraesCS5A01G099100 chr2A 100.000 31 0 0 8071 8101 65705491 65705521 3.220000e-04 58.4
40 TraesCS5A01G099100 chr2A 100.000 31 0 0 8071 8101 65742238 65742268 3.220000e-04 58.4
41 TraesCS5A01G099100 chr2A 100.000 31 0 0 8071 8101 65768072 65768102 3.220000e-04 58.4
42 TraesCS5A01G099100 chr2D 92.754 138 4 3 1749 1881 536091026 536091162 2.350000e-45 195.0
43 TraesCS5A01G099100 chr6A 91.034 145 7 4 1745 1883 545123595 545123739 3.040000e-44 191.0
44 TraesCS5A01G099100 chr3B 79.394 165 30 3 239 399 773099868 773099704 6.780000e-21 113.0
45 TraesCS5A01G099100 chr3B 92.593 54 2 2 8071 8123 780549393 780549445 8.890000e-10 76.8
46 TraesCS5A01G099100 chr4A 82.653 98 15 1 8071 8166 358824021 358823924 1.480000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G099100 chr5A 141068334 141076595 8261 True 15258.000000 15258 100.000000 1 8262 1 chr5A.!!$R1 8261
1 TraesCS5A01G099100 chr5D 126265374 126273294 7920 True 1953.833333 5598 93.066833 99 7910 6 chr5D.!!$R1 7811
2 TraesCS5A01G099100 chr5B 139163105 139173606 10501 True 1174.700000 5446 92.400100 495 8074 10 chr5B.!!$R1 7579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.465460 AACACGAGCAAGCCCAAAGA 60.465 50.000 0.00 0.0 0.00 2.52 F
1763 1829 0.109342 TATCGTACTCCCTCCGTCCC 59.891 60.000 0.00 0.0 0.00 4.46 F
2650 2718 0.036164 TAAACCGACCATGCTGCTGT 59.964 50.000 0.00 0.0 0.00 4.40 F
2713 2781 0.034477 CCCACCCCCAATCAGTACAC 60.034 60.000 0.00 0.0 0.00 2.90 F
2718 2786 0.321210 CCCCAATCAGTACACACGCA 60.321 55.000 0.00 0.0 0.00 5.24 F
3213 3729 0.548510 GTAGCCTCCCAATCCAGCTT 59.451 55.000 0.00 0.0 35.03 3.74 F
3698 4220 0.901827 TGTGTGTGTGTGTGTCTCCT 59.098 50.000 0.00 0.0 0.00 3.69 F
3714 4236 1.679977 CCTCCCGGACGTGTAGGAA 60.680 63.158 0.73 0.0 0.00 3.36 F
4494 5024 2.174639 ACCATGTCCAGTTTTGTCCAGA 59.825 45.455 0.00 0.0 0.00 3.86 F
4751 5283 2.452600 TCCAGTTGAACTTTTGGCCT 57.547 45.000 3.32 0.0 0.00 5.19 F
5855 6387 0.602905 GGTTGACTCGTGGAACTGGG 60.603 60.000 0.00 0.0 31.75 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 1920 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 R
2694 2762 0.034477 GTGTACTGATTGGGGGTGGG 60.034 60.000 0.00 0.0 0.00 4.61 R
3671 4187 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.0 0.00 3.72 R
3672 4188 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.0 0.00 3.82 R
3674 4190 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.0 0.00 3.82 R
4497 5027 1.480954 GGAGGGAGTAACATTCTGCGA 59.519 52.381 0.00 0.0 0.00 5.10 R
5309 5841 2.092592 ACCGGAAGAAACAACTCCAAGT 60.093 45.455 9.46 0.0 0.00 3.16 R
5549 6081 5.293079 GTCTAGAGGAGTGAAACAATCATGC 59.707 44.000 0.00 0.0 40.97 4.06 R
5855 6387 3.487544 GGTCAAGAATTACAGAATGCCGC 60.488 47.826 0.00 0.0 42.53 6.53 R
5864 6396 5.316167 AGCAACTGATGGTCAAGAATTACA 58.684 37.500 0.00 0.0 33.56 2.41 R
7653 8192 1.344763 CCTCCGATCAGGGACATAACC 59.655 57.143 0.00 0.0 41.52 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.157849 TGGCCAAACGATAATGATACCA 57.842 40.909 0.61 0.00 0.00 3.25
24 25 4.724399 TGGCCAAACGATAATGATACCAT 58.276 39.130 0.61 0.00 33.66 3.55
25 26 5.870706 TGGCCAAACGATAATGATACCATA 58.129 37.500 0.61 0.00 31.59 2.74
26 27 6.299922 TGGCCAAACGATAATGATACCATAA 58.700 36.000 0.61 0.00 31.59 1.90
27 28 6.205853 TGGCCAAACGATAATGATACCATAAC 59.794 38.462 0.61 0.00 31.59 1.89
28 29 6.205853 GGCCAAACGATAATGATACCATAACA 59.794 38.462 0.00 0.00 31.59 2.41
29 30 7.075741 GCCAAACGATAATGATACCATAACAC 58.924 38.462 0.00 0.00 31.59 3.32
30 31 7.287950 CCAAACGATAATGATACCATAACACG 58.712 38.462 0.00 0.00 31.59 4.49
31 32 7.170151 CCAAACGATAATGATACCATAACACGA 59.830 37.037 0.00 0.00 31.59 4.35
32 33 7.869016 AACGATAATGATACCATAACACGAG 57.131 36.000 0.00 0.00 31.59 4.18
33 34 5.862323 ACGATAATGATACCATAACACGAGC 59.138 40.000 0.00 0.00 31.59 5.03
34 35 5.861787 CGATAATGATACCATAACACGAGCA 59.138 40.000 0.00 0.00 31.59 4.26
35 36 6.364976 CGATAATGATACCATAACACGAGCAA 59.635 38.462 0.00 0.00 31.59 3.91
36 37 5.991328 AATGATACCATAACACGAGCAAG 57.009 39.130 0.00 0.00 31.59 4.01
37 38 3.194861 TGATACCATAACACGAGCAAGC 58.805 45.455 0.00 0.00 0.00 4.01
38 39 2.018542 TACCATAACACGAGCAAGCC 57.981 50.000 0.00 0.00 0.00 4.35
39 40 0.676782 ACCATAACACGAGCAAGCCC 60.677 55.000 0.00 0.00 0.00 5.19
40 41 0.676466 CCATAACACGAGCAAGCCCA 60.676 55.000 0.00 0.00 0.00 5.36
41 42 1.164411 CATAACACGAGCAAGCCCAA 58.836 50.000 0.00 0.00 0.00 4.12
42 43 1.539388 CATAACACGAGCAAGCCCAAA 59.461 47.619 0.00 0.00 0.00 3.28
43 44 1.234821 TAACACGAGCAAGCCCAAAG 58.765 50.000 0.00 0.00 0.00 2.77
44 45 0.465460 AACACGAGCAAGCCCAAAGA 60.465 50.000 0.00 0.00 0.00 2.52
45 46 0.886490 ACACGAGCAAGCCCAAAGAG 60.886 55.000 0.00 0.00 0.00 2.85
46 47 0.886490 CACGAGCAAGCCCAAAGAGT 60.886 55.000 0.00 0.00 0.00 3.24
47 48 0.685097 ACGAGCAAGCCCAAAGAGTA 59.315 50.000 0.00 0.00 0.00 2.59
48 49 1.279271 ACGAGCAAGCCCAAAGAGTAT 59.721 47.619 0.00 0.00 0.00 2.12
49 50 1.936547 CGAGCAAGCCCAAAGAGTATC 59.063 52.381 0.00 0.00 0.00 2.24
73 74 2.949451 TCGTGAGAGGAGCAAATCTC 57.051 50.000 5.41 5.41 41.93 2.75
74 75 1.133216 TCGTGAGAGGAGCAAATCTCG 59.867 52.381 7.35 0.00 44.04 4.04
75 76 1.800655 CGTGAGAGGAGCAAATCTCGG 60.801 57.143 7.35 0.30 44.04 4.63
76 77 1.205893 GTGAGAGGAGCAAATCTCGGT 59.794 52.381 7.35 0.00 44.04 4.69
77 78 1.478510 TGAGAGGAGCAAATCTCGGTC 59.521 52.381 7.35 0.00 44.04 4.79
78 79 1.754226 GAGAGGAGCAAATCTCGGTCT 59.246 52.381 0.00 0.00 42.82 3.85
79 80 2.167487 GAGAGGAGCAAATCTCGGTCTT 59.833 50.000 0.00 0.00 42.82 3.01
80 81 2.093764 AGAGGAGCAAATCTCGGTCTTG 60.094 50.000 0.00 0.00 42.82 3.02
81 82 1.902508 AGGAGCAAATCTCGGTCTTGA 59.097 47.619 0.00 0.00 42.82 3.02
82 83 2.303022 AGGAGCAAATCTCGGTCTTGAA 59.697 45.455 0.00 0.00 42.82 2.69
83 84 2.416893 GGAGCAAATCTCGGTCTTGAAC 59.583 50.000 0.00 0.00 42.82 3.18
84 85 2.416893 GAGCAAATCTCGGTCTTGAACC 59.583 50.000 0.00 0.00 45.45 3.62
97 98 3.865745 GTCTTGAACCATCGATACAGTGG 59.134 47.826 0.00 0.00 38.96 4.00
117 118 1.480954 GGGCGACTCAACCATCTCTAA 59.519 52.381 0.00 0.00 0.00 2.10
140 141 2.292569 GTCGGTGCTCTATATCCAACGA 59.707 50.000 0.00 0.00 45.24 3.85
189 190 3.218453 TCCCAACGAACATTTGTGTGAT 58.782 40.909 0.00 0.00 0.00 3.06
197 198 8.914654 CAACGAACATTTGTGTGATATCATTTT 58.085 29.630 9.02 0.00 0.00 1.82
247 248 7.434897 GTGTCATGTTCACTTGAATTAGCAAAA 59.565 33.333 13.48 0.00 36.33 2.44
254 255 8.863049 GTTCACTTGAATTAGCAAAACATATGG 58.137 33.333 7.80 0.00 36.33 2.74
279 280 5.808366 TTGGACTAGAGAGTGTTTGATGT 57.192 39.130 0.00 0.00 35.45 3.06
316 322 8.776470 AGAAATTGCACAATTATTTTTGAGTGG 58.224 29.630 8.92 0.00 39.88 4.00
317 323 8.674263 AAATTGCACAATTATTTTTGAGTGGA 57.326 26.923 8.92 0.00 39.88 4.02
318 324 8.851541 AATTGCACAATTATTTTTGAGTGGAT 57.148 26.923 6.82 0.00 39.08 3.41
319 325 7.655236 TTGCACAATTATTTTTGAGTGGATG 57.345 32.000 0.00 0.00 0.00 3.51
320 326 6.990798 TGCACAATTATTTTTGAGTGGATGA 58.009 32.000 0.00 0.00 0.00 2.92
361 367 4.339872 AGTGCAAAGCAATCATTTGGAA 57.660 36.364 0.00 0.00 41.47 3.53
464 475 4.927267 TTCAATCCAAAGAGCCCTAAGA 57.073 40.909 0.00 0.00 0.00 2.10
465 476 5.456921 TTCAATCCAAAGAGCCCTAAGAT 57.543 39.130 0.00 0.00 0.00 2.40
466 477 5.456921 TCAATCCAAAGAGCCCTAAGATT 57.543 39.130 0.00 0.00 0.00 2.40
467 478 5.440610 TCAATCCAAAGAGCCCTAAGATTC 58.559 41.667 0.00 0.00 0.00 2.52
478 492 7.278875 AGAGCCCTAAGATTCTAACATTTCTG 58.721 38.462 0.00 0.00 0.00 3.02
485 499 9.746711 CTAAGATTCTAACATTTCTGTGAAACG 57.253 33.333 0.00 0.00 42.39 3.60
508 522 8.836268 ACGTATGTTGTACAAGGAAATTCTTA 57.164 30.769 8.98 0.00 0.00 2.10
510 524 8.388103 CGTATGTTGTACAAGGAAATTCTTAGG 58.612 37.037 8.98 0.95 0.00 2.69
514 528 8.846211 TGTTGTACAAGGAAATTCTTAGGAAAG 58.154 33.333 8.98 0.00 34.90 2.62
626 640 5.554070 TCCATGTCGAGGATAGTACGATTA 58.446 41.667 0.00 0.00 38.27 1.75
646 660 6.147821 CGATTACAGAGAACCAAGTCAACAAT 59.852 38.462 0.00 0.00 0.00 2.71
647 661 6.618287 TTACAGAGAACCAAGTCAACAATG 57.382 37.500 0.00 0.00 0.00 2.82
666 680 8.983724 CAACAATGATACCCGTTTAACAAAATT 58.016 29.630 0.00 0.00 0.00 1.82
952 977 1.752498 GAACCCCAAGAAACAAACCGT 59.248 47.619 0.00 0.00 0.00 4.83
967 992 2.415010 CGTGATCTCTGGAGGCCG 59.585 66.667 0.00 0.00 0.00 6.13
1044 1069 1.739049 GGAGAGGTCGGATCAGCAG 59.261 63.158 0.00 0.00 0.00 4.24
1137 1162 0.179034 GCGGAGGCATTGAGGAATCT 60.179 55.000 0.00 0.00 39.62 2.40
1488 1513 1.599047 CATTGTCGTGCCTCTCCCT 59.401 57.895 0.00 0.00 0.00 4.20
1507 1532 3.951663 CCTTCAGGGGTTCGTAATTTCT 58.048 45.455 0.00 0.00 0.00 2.52
1520 1545 5.243207 TCGTAATTTCTCTTCCAACCTTCC 58.757 41.667 0.00 0.00 0.00 3.46
1572 1597 8.296211 TGCCTCATTGAATCTGATTGAATTTA 57.704 30.769 11.60 4.00 0.00 1.40
1573 1598 8.920174 TGCCTCATTGAATCTGATTGAATTTAT 58.080 29.630 11.60 0.00 0.00 1.40
1610 1635 7.663905 ACTTTGTGCATTGTATTACTACTTCCA 59.336 33.333 0.00 0.00 0.00 3.53
1680 1745 8.975663 AATATATGATGCATGTTAGGAGATGG 57.024 34.615 2.46 0.00 0.00 3.51
1695 1760 1.628340 AGATGGGAATCACAACCGACA 59.372 47.619 0.00 0.00 0.00 4.35
1696 1761 2.009774 GATGGGAATCACAACCGACAG 58.990 52.381 0.00 0.00 0.00 3.51
1698 1763 1.628340 TGGGAATCACAACCGACAGAT 59.372 47.619 0.00 0.00 0.00 2.90
1699 1764 2.835156 TGGGAATCACAACCGACAGATA 59.165 45.455 0.00 0.00 0.00 1.98
1700 1765 3.118775 TGGGAATCACAACCGACAGATAG 60.119 47.826 0.00 0.00 0.00 2.08
1701 1766 3.132289 GGGAATCACAACCGACAGATAGA 59.868 47.826 0.00 0.00 0.00 1.98
1702 1767 4.382685 GGGAATCACAACCGACAGATAGAA 60.383 45.833 0.00 0.00 0.00 2.10
1703 1768 5.175859 GGAATCACAACCGACAGATAGAAA 58.824 41.667 0.00 0.00 0.00 2.52
1705 1770 6.316390 GGAATCACAACCGACAGATAGAAAAT 59.684 38.462 0.00 0.00 0.00 1.82
1706 1771 7.148239 GGAATCACAACCGACAGATAGAAAATT 60.148 37.037 0.00 0.00 0.00 1.82
1707 1772 6.480524 TCACAACCGACAGATAGAAAATTG 57.519 37.500 0.00 0.00 0.00 2.32
1708 1773 5.995282 TCACAACCGACAGATAGAAAATTGT 59.005 36.000 0.00 0.00 0.00 2.71
1709 1774 6.485313 TCACAACCGACAGATAGAAAATTGTT 59.515 34.615 0.00 0.00 0.00 2.83
1710 1775 7.658167 TCACAACCGACAGATAGAAAATTGTTA 59.342 33.333 0.00 0.00 0.00 2.41
1751 1817 6.178239 AGAAATTGTGCCAAGTTATCGTAC 57.822 37.500 1.51 0.00 0.00 3.67
1752 1818 5.938125 AGAAATTGTGCCAAGTTATCGTACT 59.062 36.000 1.51 0.00 0.00 2.73
1753 1819 5.796350 AATTGTGCCAAGTTATCGTACTC 57.204 39.130 0.00 0.00 0.00 2.59
1754 1820 3.241067 TGTGCCAAGTTATCGTACTCC 57.759 47.619 0.00 0.00 0.00 3.85
1755 1821 2.093869 TGTGCCAAGTTATCGTACTCCC 60.094 50.000 0.00 0.00 0.00 4.30
1756 1822 2.167900 GTGCCAAGTTATCGTACTCCCT 59.832 50.000 0.00 0.00 0.00 4.20
1757 1823 2.429610 TGCCAAGTTATCGTACTCCCTC 59.570 50.000 0.00 0.00 0.00 4.30
1758 1824 2.223994 GCCAAGTTATCGTACTCCCTCC 60.224 54.545 0.00 0.00 0.00 4.30
1759 1825 2.034305 CCAAGTTATCGTACTCCCTCCG 59.966 54.545 0.00 0.00 0.00 4.63
1760 1826 2.686915 CAAGTTATCGTACTCCCTCCGT 59.313 50.000 0.00 0.00 0.00 4.69
1761 1827 2.570135 AGTTATCGTACTCCCTCCGTC 58.430 52.381 0.00 0.00 0.00 4.79
1762 1828 1.606189 GTTATCGTACTCCCTCCGTCC 59.394 57.143 0.00 0.00 0.00 4.79
1763 1829 0.109342 TATCGTACTCCCTCCGTCCC 59.891 60.000 0.00 0.00 0.00 4.46
1764 1830 1.929860 ATCGTACTCCCTCCGTCCCA 61.930 60.000 0.00 0.00 0.00 4.37
1765 1831 1.679977 CGTACTCCCTCCGTCCCAA 60.680 63.158 0.00 0.00 0.00 4.12
1766 1832 1.252904 CGTACTCCCTCCGTCCCAAA 61.253 60.000 0.00 0.00 0.00 3.28
1767 1833 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1768 1834 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1769 1835 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1770 1836 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1771 1837 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1772 1838 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1773 1839 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1774 1840 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1775 1841 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1776 1842 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1777 1843 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1778 1844 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1779 1845 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1780 1846 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1781 1847 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1782 1848 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1783 1849 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1784 1850 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1785 1851 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1786 1852 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1787 1853 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1795 1861 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
1796 1862 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
1798 1864 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
1799 1865 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
1861 1927 9.289303 CAAATATAAGACAAGAATTTTGGGACG 57.711 33.333 5.68 0.00 0.00 4.79
1862 1928 5.897377 ATAAGACAAGAATTTTGGGACGG 57.103 39.130 0.00 0.00 0.00 4.79
1863 1929 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1864 1930 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1865 1931 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1866 1932 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1867 1933 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1868 1934 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1869 1935 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1870 1936 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1898 1965 4.573900 AGTAGTTCTTGCTGACATCTTGG 58.426 43.478 0.00 0.00 0.00 3.61
2031 2098 4.288105 AGAAGAATTTGGAGAGGAAGCAGA 59.712 41.667 0.00 0.00 0.00 4.26
2260 2328 7.367285 TGACAGATATGTTTTTAACCAACTGC 58.633 34.615 0.00 0.00 0.00 4.40
2359 2427 8.628368 ATTTAGGATGGAAAAATCCCTTCATT 57.372 30.769 0.00 0.00 46.40 2.57
2461 2529 8.105197 TCTTTCATACCGGATAGTATGTAGCTA 58.895 37.037 9.46 0.00 46.41 3.32
2537 2605 8.138712 GGTAATCTGTGTTAGAATCAGACTAGG 58.861 40.741 0.00 0.00 40.29 3.02
2592 2660 3.081061 CTGTAGCTTGTATTGTTGCCCA 58.919 45.455 0.00 0.00 0.00 5.36
2614 2682 7.956328 CCAGAAGGGCTATGTATATAGTACA 57.044 40.000 8.15 0.00 38.81 2.90
2645 2713 1.165270 GTTGCTAAACCGACCATGCT 58.835 50.000 0.00 0.00 0.00 3.79
2650 2718 0.036164 TAAACCGACCATGCTGCTGT 59.964 50.000 0.00 0.00 0.00 4.40
2679 2747 2.421424 GGCAGTATCAGGCAAAAGTCAG 59.579 50.000 0.00 0.00 0.00 3.51
2680 2748 3.338249 GCAGTATCAGGCAAAAGTCAGA 58.662 45.455 0.00 0.00 0.00 3.27
2681 2749 3.944015 GCAGTATCAGGCAAAAGTCAGAT 59.056 43.478 0.00 0.00 0.00 2.90
2682 2750 4.397417 GCAGTATCAGGCAAAAGTCAGATT 59.603 41.667 0.00 0.00 0.00 2.40
2683 2751 5.675575 GCAGTATCAGGCAAAAGTCAGATTG 60.676 44.000 0.00 0.00 0.00 2.67
2684 2752 5.645067 CAGTATCAGGCAAAAGTCAGATTGA 59.355 40.000 0.00 0.00 0.00 2.57
2694 2762 2.900716 GTCAGATTGACTAGCTCCCC 57.099 55.000 0.00 0.00 43.73 4.81
2695 2763 1.414550 GTCAGATTGACTAGCTCCCCC 59.585 57.143 0.00 0.00 43.73 5.40
2709 2777 2.946650 CCCCCACCCCCAATCAGT 60.947 66.667 0.00 0.00 0.00 3.41
2710 2778 1.621205 CCCCCACCCCCAATCAGTA 60.621 63.158 0.00 0.00 0.00 2.74
2711 2779 1.613061 CCCCACCCCCAATCAGTAC 59.387 63.158 0.00 0.00 0.00 2.73
2712 2780 1.211567 CCCCACCCCCAATCAGTACA 61.212 60.000 0.00 0.00 0.00 2.90
2713 2781 0.034477 CCCACCCCCAATCAGTACAC 60.034 60.000 0.00 0.00 0.00 2.90
2714 2782 0.695924 CCACCCCCAATCAGTACACA 59.304 55.000 0.00 0.00 0.00 3.72
2715 2783 1.613255 CCACCCCCAATCAGTACACAC 60.613 57.143 0.00 0.00 0.00 3.82
2716 2784 0.323629 ACCCCCAATCAGTACACACG 59.676 55.000 0.00 0.00 0.00 4.49
2717 2785 1.024579 CCCCCAATCAGTACACACGC 61.025 60.000 0.00 0.00 0.00 5.34
2718 2786 0.321210 CCCCAATCAGTACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
2719 2787 0.796312 CCCAATCAGTACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
2720 2788 0.796312 CCAATCAGTACACACGCACC 59.204 55.000 0.00 0.00 0.00 5.01
2766 2834 6.402550 CCTTGACAATTCGAATCCTTACACTG 60.403 42.308 11.83 5.90 0.00 3.66
2774 2842 5.592054 TCGAATCCTTACACTGAGCTTATG 58.408 41.667 0.00 0.00 0.00 1.90
2795 2863 0.749454 AAGCGAGCTTGCCCCTAATG 60.749 55.000 22.70 0.00 34.60 1.90
2814 2882 0.881796 GCCTTTGGTAGGTTGTCTGC 59.118 55.000 0.00 0.00 46.61 4.26
2870 2938 4.036144 GGATGCTCTAATTCTTGAAGCCAC 59.964 45.833 0.00 0.00 0.00 5.01
2888 2956 2.507324 GTGTCGCCGAGGAGCTTC 60.507 66.667 0.00 0.00 0.00 3.86
2890 2958 4.856607 GTCGCCGAGGAGCTTCCG 62.857 72.222 0.00 0.00 42.75 4.30
2905 2973 0.682852 TTCCGTACCACCTGTTCAGG 59.317 55.000 16.25 16.25 0.00 3.86
2936 3004 3.305897 CGTTGCTGAGCACGTTATCAATA 59.694 43.478 6.64 0.00 38.71 1.90
2945 3013 3.979495 GCACGTTATCAATACCTCGGTAG 59.021 47.826 1.92 0.00 33.77 3.18
2947 3015 3.887716 ACGTTATCAATACCTCGGTAGCT 59.112 43.478 1.92 0.00 33.77 3.32
2951 3019 1.681793 TCAATACCTCGGTAGCTCAGC 59.318 52.381 0.00 0.00 33.77 4.26
2964 3032 1.080501 CTCAGCGGTGTGTCGTCAT 60.081 57.895 15.22 0.00 0.00 3.06
3007 3521 2.188829 CATTGGGCGGCGATGACAT 61.189 57.895 12.98 0.00 0.00 3.06
3008 3522 1.453745 ATTGGGCGGCGATGACATT 60.454 52.632 12.98 0.00 0.00 2.71
3024 3538 2.151202 ACATTAACTCAGGTTGCGTGG 58.849 47.619 0.00 0.00 36.92 4.94
3025 3539 1.468520 CATTAACTCAGGTTGCGTGGG 59.531 52.381 0.00 0.00 36.92 4.61
3026 3540 0.887387 TTAACTCAGGTTGCGTGGGC 60.887 55.000 0.00 0.00 36.92 5.36
3039 3553 2.281900 TGGGCTACAACGTTGGGC 60.282 61.111 30.34 29.11 0.00 5.36
3109 3623 2.069165 GCAGGAACAGGGGAAGGTGT 62.069 60.000 0.00 0.00 0.00 4.16
3185 3701 1.276415 GAAGTCGCTGCAGAGATGAC 58.724 55.000 23.33 19.21 0.00 3.06
3194 3710 1.277273 TGCAGAGATGACCTGAGTTGG 59.723 52.381 0.00 0.00 33.65 3.77
3213 3729 0.548510 GTAGCCTCCCAATCCAGCTT 59.451 55.000 0.00 0.00 35.03 3.74
3280 3796 3.264193 TGGCTTGATGTACACCAGAGATT 59.736 43.478 0.00 0.00 0.00 2.40
3347 3863 3.028850 CCTCAAATGGCATCATTCTGGT 58.971 45.455 0.00 0.00 42.29 4.00
3348 3864 3.449737 CCTCAAATGGCATCATTCTGGTT 59.550 43.478 0.00 0.00 42.29 3.67
3428 3944 7.986889 CCCCCAAAGGAAAATGTAATATTTCAG 59.013 37.037 0.00 0.00 37.29 3.02
3429 3945 7.986889 CCCCAAAGGAAAATGTAATATTTCAGG 59.013 37.037 0.00 0.00 37.29 3.86
3441 3957 7.327214 TGTAATATTTCAGGGCAAATCAAACC 58.673 34.615 0.00 0.00 0.00 3.27
3485 4001 4.168101 ACTATTGACCTCAGGACTGGAAA 58.832 43.478 0.00 0.00 0.00 3.13
3503 4019 8.213518 ACTGGAAATAGTAATACAATGCACAG 57.786 34.615 0.00 0.00 0.00 3.66
3659 4175 5.654209 AGATGCAGATGTAAGTACTCTGACA 59.346 40.000 12.01 9.70 39.16 3.58
3666 4182 8.341903 CAGATGTAAGTACTCTGACATGTAGAG 58.658 40.741 21.17 21.17 43.63 2.43
3674 4190 4.731720 CTCTGACATGTAGAGTGAGTGTG 58.268 47.826 17.40 0.00 37.48 3.82
3675 4191 4.145052 TCTGACATGTAGAGTGAGTGTGT 58.855 43.478 0.00 0.00 0.00 3.72
3676 4192 4.022849 TCTGACATGTAGAGTGAGTGTGTG 60.023 45.833 0.00 0.00 0.00 3.82
3677 4193 3.636764 TGACATGTAGAGTGAGTGTGTGT 59.363 43.478 0.00 0.00 0.00 3.72
3698 4220 0.901827 TGTGTGTGTGTGTGTCTCCT 59.098 50.000 0.00 0.00 0.00 3.69
3714 4236 1.679977 CCTCCCGGACGTGTAGGAA 60.680 63.158 0.73 0.00 0.00 3.36
3806 4335 7.552330 TGCTCTGCAGTATTATTGTGAAATACA 59.448 33.333 14.67 0.00 40.65 2.29
3849 4378 7.272037 ACCATTGTTTAACGATTCTGTCTTT 57.728 32.000 0.00 0.00 0.00 2.52
3857 4386 9.113876 GTTTAACGATTCTGTCTTTTTACATGG 57.886 33.333 0.00 0.00 0.00 3.66
3878 4407 5.338632 TGGGTACTCTCTGGTTCTTGAATA 58.661 41.667 0.00 0.00 0.00 1.75
4329 4859 9.034800 ACATATAACTTTGGTTTTGATGATGGT 57.965 29.630 0.00 0.00 36.92 3.55
4337 4867 6.968263 TGGTTTTGATGATGGTGAAACTAA 57.032 33.333 0.00 0.00 36.74 2.24
4391 4921 4.439253 AGGTAGTTCCTTGCTTTTCTGT 57.561 40.909 0.00 0.00 45.67 3.41
4392 4922 4.793201 AGGTAGTTCCTTGCTTTTCTGTT 58.207 39.130 0.00 0.00 45.67 3.16
4393 4923 4.580580 AGGTAGTTCCTTGCTTTTCTGTTG 59.419 41.667 0.00 0.00 45.67 3.33
4394 4924 3.443099 AGTTCCTTGCTTTTCTGTTGC 57.557 42.857 0.00 0.00 0.00 4.17
4395 4925 2.760092 AGTTCCTTGCTTTTCTGTTGCA 59.240 40.909 0.00 0.00 34.69 4.08
4396 4926 3.195396 AGTTCCTTGCTTTTCTGTTGCAA 59.805 39.130 0.00 0.00 43.25 4.08
4397 4927 3.883830 TCCTTGCTTTTCTGTTGCAAA 57.116 38.095 0.00 0.00 44.49 3.68
4398 4928 4.405116 TCCTTGCTTTTCTGTTGCAAAT 57.595 36.364 0.00 0.00 44.49 2.32
4399 4929 5.528043 TCCTTGCTTTTCTGTTGCAAATA 57.472 34.783 0.00 0.00 44.49 1.40
4400 4930 5.531634 TCCTTGCTTTTCTGTTGCAAATAG 58.468 37.500 0.00 2.86 44.49 1.73
4401 4931 5.068987 TCCTTGCTTTTCTGTTGCAAATAGT 59.931 36.000 0.00 0.00 44.49 2.12
4402 4932 6.264292 TCCTTGCTTTTCTGTTGCAAATAGTA 59.736 34.615 0.00 0.00 44.49 1.82
4403 4933 7.039784 TCCTTGCTTTTCTGTTGCAAATAGTAT 60.040 33.333 0.00 0.00 44.49 2.12
4404 4934 7.599998 CCTTGCTTTTCTGTTGCAAATAGTATT 59.400 33.333 0.00 0.00 44.49 1.89
4405 4935 8.885494 TTGCTTTTCTGTTGCAAATAGTATTT 57.115 26.923 0.00 2.10 42.65 1.40
4406 4936 8.885494 TGCTTTTCTGTTGCAAATAGTATTTT 57.115 26.923 0.00 0.00 36.34 1.82
4407 4937 9.973450 TGCTTTTCTGTTGCAAATAGTATTTTA 57.027 25.926 0.00 0.00 36.34 1.52
4490 5020 4.336993 TGTGTTACCATGTCCAGTTTTGTC 59.663 41.667 0.00 0.00 0.00 3.18
4494 5024 2.174639 ACCATGTCCAGTTTTGTCCAGA 59.825 45.455 0.00 0.00 0.00 3.86
4495 5025 2.816087 CCATGTCCAGTTTTGTCCAGAG 59.184 50.000 0.00 0.00 0.00 3.35
4496 5026 3.496692 CCATGTCCAGTTTTGTCCAGAGA 60.497 47.826 0.00 0.00 0.00 3.10
4497 5027 4.330250 CATGTCCAGTTTTGTCCAGAGAT 58.670 43.478 0.00 0.00 0.00 2.75
4559 5091 8.725148 CATATTAGCTTTGACTGAACTCAAACT 58.275 33.333 0.00 0.00 35.63 2.66
4700 5232 4.908601 AGTATTGTGGTCAGATGTTCCA 57.091 40.909 0.00 0.00 0.00 3.53
4718 5250 5.070446 TGTTCCATGTCAGTCTCTTGTTAGT 59.930 40.000 0.00 0.00 0.00 2.24
4721 5253 6.688578 TCCATGTCAGTCTCTTGTTAGTAAC 58.311 40.000 6.06 6.06 0.00 2.50
4751 5283 2.452600 TCCAGTTGAACTTTTGGCCT 57.547 45.000 3.32 0.00 0.00 5.19
4752 5284 3.586470 TCCAGTTGAACTTTTGGCCTA 57.414 42.857 3.32 0.00 0.00 3.93
4774 5306 5.576447 ACCACAAAAATAGGCTAAATCCG 57.424 39.130 0.00 0.00 0.00 4.18
5055 5587 4.537945 ATTGCTCAGGTACTAGAGGGTA 57.462 45.455 14.15 0.00 36.02 3.69
5202 5734 9.453572 TTGCATTTACTGAAGTAGATTCATCTT 57.546 29.630 0.00 0.00 46.71 2.40
5234 5766 7.164122 CACTATACAGAATTATGCATCAGGGT 58.836 38.462 0.19 0.00 0.00 4.34
5279 5811 5.061853 GCTCAAGAAGATCATGCTTATCCA 58.938 41.667 0.00 0.00 0.00 3.41
5309 5841 3.334691 AGCAGCTAATGTTAAAGTGCGA 58.665 40.909 0.00 0.00 34.61 5.10
5855 6387 0.602905 GGTTGACTCGTGGAACTGGG 60.603 60.000 0.00 0.00 31.75 4.45
5864 6396 2.044946 GGAACTGGGCGGCATTCT 60.045 61.111 12.47 0.00 0.00 2.40
6050 6582 2.840651 AGAGATGGTCCAGTTTACAGGG 59.159 50.000 0.00 0.00 0.00 4.45
6419 6951 2.892374 ACAAGCAAACAAAGTGAAGGC 58.108 42.857 0.00 0.00 0.00 4.35
6889 7425 2.380410 CGGTGGTTTTCTCTCGGCG 61.380 63.158 0.00 0.00 0.00 6.46
6928 7464 2.385875 CGACACATTCTGCTGCGCT 61.386 57.895 9.73 0.00 0.00 5.92
7294 7830 7.994194 AGAAAATTCATCTGTAGAAATCTGCC 58.006 34.615 0.00 0.00 0.00 4.85
7358 7894 3.426159 CGTGGACTTCATTTCATTTCCCG 60.426 47.826 0.00 0.00 0.00 5.14
7536 8074 3.644966 ACCTTGTGGTGTCTTCTTTCA 57.355 42.857 0.00 0.00 46.51 2.69
7600 8138 4.764336 CGCTTGCATGTGTGGGCG 62.764 66.667 5.04 0.60 36.89 6.13
7609 8147 1.528076 TGTGTGGGCGCACAGAATT 60.528 52.632 34.01 0.00 43.54 2.17
7653 8192 2.844362 TCCTCCCTGGGCTATGCG 60.844 66.667 8.22 0.00 36.20 4.73
7733 10714 1.219393 GGAAGAACAGAGGGGAGCG 59.781 63.158 0.00 0.00 0.00 5.03
7750 10731 0.466124 GCGGGTAGAAAGCAGAGGAT 59.534 55.000 0.00 0.00 0.00 3.24
7768 10755 6.255453 CAGAGGATGAAGATCGTTCTCTTTTC 59.745 42.308 7.52 0.00 44.04 2.29
7769 10756 6.154363 AGAGGATGAAGATCGTTCTCTTTTCT 59.846 38.462 4.82 0.00 44.04 2.52
7770 10757 6.706295 AGGATGAAGATCGTTCTCTTTTCTT 58.294 36.000 0.00 0.00 35.63 2.52
7771 10758 6.816140 AGGATGAAGATCGTTCTCTTTTCTTC 59.184 38.462 0.00 0.00 41.58 2.87
7772 10759 6.816140 GGATGAAGATCGTTCTCTTTTCTTCT 59.184 38.462 11.07 0.00 41.69 2.85
7773 10760 7.333174 GGATGAAGATCGTTCTCTTTTCTTCTT 59.667 37.037 11.07 5.99 41.69 2.52
7774 10761 7.644986 TGAAGATCGTTCTCTTTTCTTCTTC 57.355 36.000 11.07 0.00 41.69 2.87
7775 10762 6.647067 TGAAGATCGTTCTCTTTTCTTCTTCC 59.353 38.462 11.07 0.00 41.69 3.46
7776 10763 6.353404 AGATCGTTCTCTTTTCTTCTTCCT 57.647 37.500 0.00 0.00 0.00 3.36
7777 10764 6.764379 AGATCGTTCTCTTTTCTTCTTCCTT 58.236 36.000 0.00 0.00 0.00 3.36
7778 10765 7.220740 AGATCGTTCTCTTTTCTTCTTCCTTT 58.779 34.615 0.00 0.00 0.00 3.11
7779 10766 7.717436 AGATCGTTCTCTTTTCTTCTTCCTTTT 59.283 33.333 0.00 0.00 0.00 2.27
7780 10767 7.625828 TCGTTCTCTTTTCTTCTTCCTTTTT 57.374 32.000 0.00 0.00 0.00 1.94
7781 10768 7.472543 TCGTTCTCTTTTCTTCTTCCTTTTTG 58.527 34.615 0.00 0.00 0.00 2.44
7782 10769 6.197282 CGTTCTCTTTTCTTCTTCCTTTTTGC 59.803 38.462 0.00 0.00 0.00 3.68
7783 10770 7.261325 GTTCTCTTTTCTTCTTCCTTTTTGCT 58.739 34.615 0.00 0.00 0.00 3.91
7784 10771 7.410120 TCTCTTTTCTTCTTCCTTTTTGCTT 57.590 32.000 0.00 0.00 0.00 3.91
7825 10812 7.534282 TGCGTATCATTTTAGAAAAGCATGAA 58.466 30.769 0.00 0.00 0.00 2.57
7843 10830 8.523915 AGCATGAATTAGATTACATGGTTGAA 57.476 30.769 0.00 0.00 44.97 2.69
7855 10842 3.762288 ACATGGTTGAAGACTAGCTACGA 59.238 43.478 0.00 0.00 0.00 3.43
7856 10843 4.142359 ACATGGTTGAAGACTAGCTACGAG 60.142 45.833 0.00 0.00 0.00 4.18
7857 10844 3.418995 TGGTTGAAGACTAGCTACGAGT 58.581 45.455 0.00 0.00 0.00 4.18
7859 10846 3.172824 GTTGAAGACTAGCTACGAGTGC 58.827 50.000 0.00 0.00 0.00 4.40
7860 10847 2.433436 TGAAGACTAGCTACGAGTGCA 58.567 47.619 0.00 0.00 0.00 4.57
7917 11195 6.735556 AGACATAAGGGGAAATTCATTCACT 58.264 36.000 0.00 0.00 41.48 3.41
7947 11225 5.749588 CACTTTGATCACAAATGTGCTTCAA 59.250 36.000 19.10 19.10 45.25 2.69
8019 11318 0.609406 GACCACTGCCCTTCCCTTTC 60.609 60.000 0.00 0.00 0.00 2.62
8045 11344 3.331889 AGTTGGTGTTCTTGGATCTCCAT 59.668 43.478 0.00 0.00 46.97 3.41
8052 11351 5.416952 GTGTTCTTGGATCTCCATTTGACAT 59.583 40.000 0.00 0.00 46.97 3.06
8053 11352 6.599244 GTGTTCTTGGATCTCCATTTGACATA 59.401 38.462 0.00 0.00 46.97 2.29
8054 11353 7.284034 GTGTTCTTGGATCTCCATTTGACATAT 59.716 37.037 0.00 0.00 46.97 1.78
8055 11354 7.835682 TGTTCTTGGATCTCCATTTGACATATT 59.164 33.333 0.00 0.00 46.97 1.28
8057 11356 9.919416 TTCTTGGATCTCCATTTGACATATTAA 57.081 29.630 0.00 0.00 46.97 1.40
8081 11380 8.585189 AAACTTTAAGGTCAACTAGTAGAACG 57.415 34.615 3.59 0.00 0.00 3.95
8082 11381 6.155136 ACTTTAAGGTCAACTAGTAGAACGC 58.845 40.000 3.59 0.00 0.00 4.84
8083 11382 3.589495 AAGGTCAACTAGTAGAACGCC 57.411 47.619 3.59 1.26 0.00 5.68
8084 11383 1.823610 AGGTCAACTAGTAGAACGCCC 59.176 52.381 3.59 0.00 0.00 6.13
8085 11384 1.468736 GGTCAACTAGTAGAACGCCCG 60.469 57.143 3.59 0.00 0.00 6.13
8086 11385 1.200948 GTCAACTAGTAGAACGCCCGT 59.799 52.381 3.59 0.00 0.00 5.28
8087 11386 1.200716 TCAACTAGTAGAACGCCCGTG 59.799 52.381 3.59 0.00 0.00 4.94
8088 11387 0.108945 AACTAGTAGAACGCCCGTGC 60.109 55.000 3.59 0.00 0.00 5.34
8105 11404 3.427670 CGTTGTCACGGGCCTTTT 58.572 55.556 0.84 0.00 43.16 2.27
8106 11405 2.619362 CGTTGTCACGGGCCTTTTA 58.381 52.632 0.84 0.00 43.16 1.52
8107 11406 0.945813 CGTTGTCACGGGCCTTTTAA 59.054 50.000 0.84 0.00 43.16 1.52
8108 11407 1.334243 CGTTGTCACGGGCCTTTTAAA 59.666 47.619 0.84 0.00 43.16 1.52
8109 11408 2.030628 CGTTGTCACGGGCCTTTTAAAT 60.031 45.455 0.84 0.00 43.16 1.40
8110 11409 3.551250 CGTTGTCACGGGCCTTTTAAATT 60.551 43.478 0.84 0.00 43.16 1.82
8111 11410 4.373527 GTTGTCACGGGCCTTTTAAATTT 58.626 39.130 0.84 0.00 0.00 1.82
8112 11411 4.674281 TGTCACGGGCCTTTTAAATTTT 57.326 36.364 0.84 0.00 0.00 1.82
8113 11412 4.623002 TGTCACGGGCCTTTTAAATTTTC 58.377 39.130 0.84 0.00 0.00 2.29
8114 11413 3.991773 GTCACGGGCCTTTTAAATTTTCC 59.008 43.478 0.84 0.00 0.00 3.13
8115 11414 3.898741 TCACGGGCCTTTTAAATTTTCCT 59.101 39.130 0.84 0.00 0.00 3.36
8116 11415 3.993736 CACGGGCCTTTTAAATTTTCCTG 59.006 43.478 0.84 0.00 0.00 3.86
8117 11416 3.898741 ACGGGCCTTTTAAATTTTCCTGA 59.101 39.130 0.84 0.00 0.00 3.86
8118 11417 4.530553 ACGGGCCTTTTAAATTTTCCTGAT 59.469 37.500 0.84 0.00 0.00 2.90
8119 11418 5.012664 ACGGGCCTTTTAAATTTTCCTGATT 59.987 36.000 0.84 0.00 0.00 2.57
8120 11419 6.211785 ACGGGCCTTTTAAATTTTCCTGATTA 59.788 34.615 0.84 0.00 0.00 1.75
8121 11420 6.533723 CGGGCCTTTTAAATTTTCCTGATTAC 59.466 38.462 0.84 0.00 0.00 1.89
8122 11421 7.390823 GGGCCTTTTAAATTTTCCTGATTACA 58.609 34.615 0.84 0.00 0.00 2.41
8123 11422 8.046708 GGGCCTTTTAAATTTTCCTGATTACAT 58.953 33.333 0.84 0.00 0.00 2.29
8124 11423 9.098355 GGCCTTTTAAATTTTCCTGATTACATC 57.902 33.333 0.00 0.00 0.00 3.06
8125 11424 9.875691 GCCTTTTAAATTTTCCTGATTACATCT 57.124 29.630 0.00 0.00 0.00 2.90
8153 11452 5.968254 ACATAATGCATGTCAAAATCTGCA 58.032 33.333 0.00 0.76 44.99 4.41
8156 11455 3.945981 TGCATGTCAAAATCTGCATGT 57.054 38.095 0.00 0.00 39.54 3.21
8157 11456 3.840468 TGCATGTCAAAATCTGCATGTC 58.160 40.909 0.00 0.00 39.54 3.06
8158 11457 3.508402 TGCATGTCAAAATCTGCATGTCT 59.492 39.130 0.00 0.00 39.54 3.41
8159 11458 4.701171 TGCATGTCAAAATCTGCATGTCTA 59.299 37.500 0.00 0.00 39.54 2.59
8160 11459 5.163693 TGCATGTCAAAATCTGCATGTCTAG 60.164 40.000 0.00 0.00 39.54 2.43
8161 11460 5.065602 GCATGTCAAAATCTGCATGTCTAGA 59.934 40.000 0.00 0.00 39.63 2.43
8162 11461 6.403964 GCATGTCAAAATCTGCATGTCTAGAA 60.404 38.462 0.00 0.00 39.63 2.10
8163 11462 7.532571 CATGTCAAAATCTGCATGTCTAGAAA 58.467 34.615 0.00 0.00 36.05 2.52
8164 11463 7.509141 TGTCAAAATCTGCATGTCTAGAAAA 57.491 32.000 0.00 0.00 0.00 2.29
8165 11464 7.939782 TGTCAAAATCTGCATGTCTAGAAAAA 58.060 30.769 0.00 0.00 0.00 1.94
8166 11465 8.077991 TGTCAAAATCTGCATGTCTAGAAAAAG 58.922 33.333 0.00 0.00 0.00 2.27
8167 11466 8.292448 GTCAAAATCTGCATGTCTAGAAAAAGA 58.708 33.333 0.00 0.00 0.00 2.52
8168 11467 9.017509 TCAAAATCTGCATGTCTAGAAAAAGAT 57.982 29.630 0.00 0.00 0.00 2.40
8171 11470 7.727331 ATCTGCATGTCTAGAAAAAGATAGC 57.273 36.000 0.00 0.00 0.00 2.97
8172 11471 6.643388 TCTGCATGTCTAGAAAAAGATAGCA 58.357 36.000 0.00 0.00 32.35 3.49
8173 11472 6.536582 TCTGCATGTCTAGAAAAAGATAGCAC 59.463 38.462 0.00 0.00 31.02 4.40
8174 11473 6.172630 TGCATGTCTAGAAAAAGATAGCACA 58.827 36.000 0.00 0.00 29.98 4.57
8175 11474 6.092670 TGCATGTCTAGAAAAAGATAGCACAC 59.907 38.462 0.00 0.00 29.98 3.82
8176 11475 6.092670 GCATGTCTAGAAAAAGATAGCACACA 59.907 38.462 0.00 0.00 0.00 3.72
8177 11476 7.361201 GCATGTCTAGAAAAAGATAGCACACAA 60.361 37.037 0.00 0.00 0.00 3.33
8178 11477 7.421530 TGTCTAGAAAAAGATAGCACACAAC 57.578 36.000 0.00 0.00 0.00 3.32
8179 11478 7.217200 TGTCTAGAAAAAGATAGCACACAACT 58.783 34.615 0.00 0.00 0.00 3.16
8180 11479 8.364894 TGTCTAGAAAAAGATAGCACACAACTA 58.635 33.333 0.00 0.00 0.00 2.24
8181 11480 9.372369 GTCTAGAAAAAGATAGCACACAACTAT 57.628 33.333 0.00 0.00 33.01 2.12
8182 11481 9.944376 TCTAGAAAAAGATAGCACACAACTATT 57.056 29.630 0.00 0.00 30.46 1.73
8183 11482 9.979270 CTAGAAAAAGATAGCACACAACTATTG 57.021 33.333 0.00 0.00 30.46 1.90
8184 11483 7.820648 AGAAAAAGATAGCACACAACTATTGG 58.179 34.615 0.00 0.00 30.46 3.16
8185 11484 7.665559 AGAAAAAGATAGCACACAACTATTGGA 59.334 33.333 0.00 0.00 30.46 3.53
8186 11485 6.743575 AAAGATAGCACACAACTATTGGAC 57.256 37.500 0.00 0.00 30.46 4.02
8187 11486 5.420725 AGATAGCACACAACTATTGGACA 57.579 39.130 0.00 0.00 30.46 4.02
8188 11487 5.423015 AGATAGCACACAACTATTGGACAG 58.577 41.667 0.00 0.00 30.46 3.51
8189 11488 2.154462 AGCACACAACTATTGGACAGC 58.846 47.619 0.00 0.00 34.12 4.40
8190 11489 2.154462 GCACACAACTATTGGACAGCT 58.846 47.619 0.00 0.00 34.12 4.24
8191 11490 3.007940 AGCACACAACTATTGGACAGCTA 59.992 43.478 0.00 0.00 34.12 3.32
8192 11491 3.941483 GCACACAACTATTGGACAGCTAT 59.059 43.478 0.00 0.00 34.12 2.97
8193 11492 4.396166 GCACACAACTATTGGACAGCTATT 59.604 41.667 0.00 0.00 34.12 1.73
8194 11493 5.674569 GCACACAACTATTGGACAGCTATTG 60.675 44.000 0.00 0.00 34.12 1.90
8195 11494 5.643348 CACACAACTATTGGACAGCTATTGA 59.357 40.000 0.00 0.00 34.12 2.57
8196 11495 6.149308 CACACAACTATTGGACAGCTATTGAA 59.851 38.462 0.00 0.00 34.12 2.69
8197 11496 6.714810 ACACAACTATTGGACAGCTATTGAAA 59.285 34.615 0.00 0.00 34.12 2.69
8198 11497 7.394359 ACACAACTATTGGACAGCTATTGAAAT 59.606 33.333 0.00 0.00 34.12 2.17
8199 11498 7.912250 CACAACTATTGGACAGCTATTGAAATC 59.088 37.037 0.00 0.00 34.12 2.17
8200 11499 7.067494 ACAACTATTGGACAGCTATTGAAATCC 59.933 37.037 0.00 0.00 34.12 3.01
8201 11500 6.662755 ACTATTGGACAGCTATTGAAATCCA 58.337 36.000 0.00 0.00 34.44 3.41
8202 11501 5.841957 ATTGGACAGCTATTGAAATCCAC 57.158 39.130 0.00 0.00 35.99 4.02
8203 11502 4.574674 TGGACAGCTATTGAAATCCACT 57.425 40.909 0.00 0.00 31.30 4.00
8204 11503 4.922206 TGGACAGCTATTGAAATCCACTT 58.078 39.130 0.00 0.00 31.30 3.16
8205 11504 4.943705 TGGACAGCTATTGAAATCCACTTC 59.056 41.667 0.00 0.00 31.30 3.01
8206 11505 4.943705 GGACAGCTATTGAAATCCACTTCA 59.056 41.667 0.00 0.00 33.48 3.02
8207 11506 5.065731 GGACAGCTATTGAAATCCACTTCAG 59.934 44.000 0.00 0.00 36.69 3.02
8208 11507 5.564550 ACAGCTATTGAAATCCACTTCAGT 58.435 37.500 0.00 0.00 36.69 3.41
8209 11508 5.413833 ACAGCTATTGAAATCCACTTCAGTG 59.586 40.000 0.00 0.00 45.23 3.66
8210 11509 5.413833 CAGCTATTGAAATCCACTTCAGTGT 59.586 40.000 6.22 0.00 44.21 3.55
8211 11510 6.595326 CAGCTATTGAAATCCACTTCAGTGTA 59.405 38.462 6.22 0.00 44.21 2.90
8212 11511 7.119699 CAGCTATTGAAATCCACTTCAGTGTAA 59.880 37.037 6.22 0.00 44.21 2.41
8213 11512 7.831193 AGCTATTGAAATCCACTTCAGTGTAAT 59.169 33.333 6.22 0.00 44.21 1.89
8214 11513 7.912250 GCTATTGAAATCCACTTCAGTGTAATG 59.088 37.037 6.22 0.00 44.21 1.90
8215 11514 5.627499 TGAAATCCACTTCAGTGTAATGC 57.373 39.130 6.22 0.00 44.21 3.56
8216 11515 5.069318 TGAAATCCACTTCAGTGTAATGCA 58.931 37.500 6.22 0.00 44.21 3.96
8217 11516 5.711506 TGAAATCCACTTCAGTGTAATGCAT 59.288 36.000 6.22 0.00 44.21 3.96
8218 11517 6.209192 TGAAATCCACTTCAGTGTAATGCATT 59.791 34.615 17.56 17.56 44.21 3.56
8219 11518 6.594788 AATCCACTTCAGTGTAATGCATTT 57.405 33.333 18.75 1.81 44.21 2.32
8220 11519 6.594788 ATCCACTTCAGTGTAATGCATTTT 57.405 33.333 18.75 0.00 44.21 1.82
8221 11520 6.012658 TCCACTTCAGTGTAATGCATTTTC 57.987 37.500 18.75 11.78 44.21 2.29
8222 11521 5.534278 TCCACTTCAGTGTAATGCATTTTCA 59.466 36.000 18.75 14.22 44.21 2.69
8223 11522 6.209192 TCCACTTCAGTGTAATGCATTTTCAT 59.791 34.615 18.75 0.00 44.21 2.57
8224 11523 6.869913 CCACTTCAGTGTAATGCATTTTCATT 59.130 34.615 18.75 11.20 44.21 2.57
8225 11524 8.028354 CCACTTCAGTGTAATGCATTTTCATTA 58.972 33.333 18.75 0.00 44.21 1.90
8226 11525 9.409312 CACTTCAGTGTAATGCATTTTCATTAA 57.591 29.630 18.75 11.20 39.70 1.40
8227 11526 9.979578 ACTTCAGTGTAATGCATTTTCATTAAA 57.020 25.926 18.75 6.29 39.70 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.870706 TGGTATCATTATCGTTTGGCCATA 58.129 37.500 6.09 0.00 0.00 2.74
1 2 4.724399 TGGTATCATTATCGTTTGGCCAT 58.276 39.130 6.09 0.00 0.00 4.40
2 3 4.157849 TGGTATCATTATCGTTTGGCCA 57.842 40.909 0.00 0.00 0.00 5.36
3 4 6.205853 TGTTATGGTATCATTATCGTTTGGCC 59.794 38.462 0.00 0.00 34.96 5.36
4 5 7.075741 GTGTTATGGTATCATTATCGTTTGGC 58.924 38.462 0.00 0.00 34.96 4.52
5 6 7.170151 TCGTGTTATGGTATCATTATCGTTTGG 59.830 37.037 0.00 0.00 34.96 3.28
6 7 8.067780 TCGTGTTATGGTATCATTATCGTTTG 57.932 34.615 0.00 0.00 34.96 2.93
7 8 7.095774 GCTCGTGTTATGGTATCATTATCGTTT 60.096 37.037 0.00 0.00 34.96 3.60
8 9 6.365247 GCTCGTGTTATGGTATCATTATCGTT 59.635 38.462 0.00 0.00 34.96 3.85
9 10 5.862323 GCTCGTGTTATGGTATCATTATCGT 59.138 40.000 0.00 0.00 34.96 3.73
10 11 5.861787 TGCTCGTGTTATGGTATCATTATCG 59.138 40.000 0.00 0.00 34.96 2.92
11 12 7.622256 GCTTGCTCGTGTTATGGTATCATTATC 60.622 40.741 0.00 0.00 34.96 1.75
12 13 6.147821 GCTTGCTCGTGTTATGGTATCATTAT 59.852 38.462 0.00 0.00 34.96 1.28
13 14 5.465390 GCTTGCTCGTGTTATGGTATCATTA 59.535 40.000 0.00 0.00 34.96 1.90
14 15 4.273480 GCTTGCTCGTGTTATGGTATCATT 59.727 41.667 0.00 0.00 34.96 2.57
15 16 3.809832 GCTTGCTCGTGTTATGGTATCAT 59.190 43.478 0.00 0.00 37.40 2.45
16 17 3.194861 GCTTGCTCGTGTTATGGTATCA 58.805 45.455 0.00 0.00 0.00 2.15
17 18 2.544267 GGCTTGCTCGTGTTATGGTATC 59.456 50.000 0.00 0.00 0.00 2.24
18 19 2.561569 GGCTTGCTCGTGTTATGGTAT 58.438 47.619 0.00 0.00 0.00 2.73
19 20 1.406341 GGGCTTGCTCGTGTTATGGTA 60.406 52.381 0.00 0.00 0.00 3.25
20 21 0.676782 GGGCTTGCTCGTGTTATGGT 60.677 55.000 0.00 0.00 0.00 3.55
21 22 0.676466 TGGGCTTGCTCGTGTTATGG 60.676 55.000 0.00 0.00 0.00 2.74
22 23 1.164411 TTGGGCTTGCTCGTGTTATG 58.836 50.000 0.00 0.00 0.00 1.90
23 24 1.812571 CTTTGGGCTTGCTCGTGTTAT 59.187 47.619 0.00 0.00 0.00 1.89
24 25 1.202710 TCTTTGGGCTTGCTCGTGTTA 60.203 47.619 0.00 0.00 0.00 2.41
25 26 0.465460 TCTTTGGGCTTGCTCGTGTT 60.465 50.000 0.00 0.00 0.00 3.32
26 27 0.886490 CTCTTTGGGCTTGCTCGTGT 60.886 55.000 0.00 0.00 0.00 4.49
27 28 0.886490 ACTCTTTGGGCTTGCTCGTG 60.886 55.000 0.00 0.00 0.00 4.35
28 29 0.685097 TACTCTTTGGGCTTGCTCGT 59.315 50.000 0.00 0.00 0.00 4.18
29 30 1.936547 GATACTCTTTGGGCTTGCTCG 59.063 52.381 0.00 0.00 0.00 5.03
30 31 3.274095 AGATACTCTTTGGGCTTGCTC 57.726 47.619 0.00 0.00 0.00 4.26
31 32 3.728385 AAGATACTCTTTGGGCTTGCT 57.272 42.857 0.00 0.00 31.57 3.91
32 33 5.277538 CGATAAAGATACTCTTTGGGCTTGC 60.278 44.000 11.42 0.00 45.45 4.01
33 34 5.817816 ACGATAAAGATACTCTTTGGGCTTG 59.182 40.000 11.42 2.44 45.45 4.01
34 35 5.817816 CACGATAAAGATACTCTTTGGGCTT 59.182 40.000 11.42 0.00 45.45 4.35
35 36 5.128827 TCACGATAAAGATACTCTTTGGGCT 59.871 40.000 11.42 0.00 45.45 5.19
36 37 5.357257 TCACGATAAAGATACTCTTTGGGC 58.643 41.667 11.42 1.84 45.45 5.36
37 38 6.806751 TCTCACGATAAAGATACTCTTTGGG 58.193 40.000 11.42 4.39 45.45 4.12
38 39 6.920758 CCTCTCACGATAAAGATACTCTTTGG 59.079 42.308 11.42 4.67 45.45 3.28
39 40 7.708051 TCCTCTCACGATAAAGATACTCTTTG 58.292 38.462 11.42 0.00 45.45 2.77
41 42 6.016610 GCTCCTCTCACGATAAAGATACTCTT 60.017 42.308 0.00 0.00 38.59 2.85
42 43 5.472137 GCTCCTCTCACGATAAAGATACTCT 59.528 44.000 0.00 0.00 0.00 3.24
43 44 5.239744 TGCTCCTCTCACGATAAAGATACTC 59.760 44.000 0.00 0.00 0.00 2.59
44 45 5.133941 TGCTCCTCTCACGATAAAGATACT 58.866 41.667 0.00 0.00 0.00 2.12
45 46 5.440234 TGCTCCTCTCACGATAAAGATAC 57.560 43.478 0.00 0.00 0.00 2.24
46 47 6.465439 TTTGCTCCTCTCACGATAAAGATA 57.535 37.500 0.00 0.00 0.00 1.98
47 48 5.344743 TTTGCTCCTCTCACGATAAAGAT 57.655 39.130 0.00 0.00 0.00 2.40
48 49 4.801330 TTTGCTCCTCTCACGATAAAGA 57.199 40.909 0.00 0.00 0.00 2.52
49 50 5.355596 AGATTTGCTCCTCTCACGATAAAG 58.644 41.667 0.00 0.00 0.00 1.85
50 51 5.344743 AGATTTGCTCCTCTCACGATAAA 57.655 39.130 0.00 0.00 0.00 1.40
51 52 4.498177 CGAGATTTGCTCCTCTCACGATAA 60.498 45.833 0.00 0.00 40.70 1.75
52 53 3.003793 CGAGATTTGCTCCTCTCACGATA 59.996 47.826 0.00 0.00 40.70 2.92
53 54 2.223688 CGAGATTTGCTCCTCTCACGAT 60.224 50.000 0.00 0.00 40.70 3.73
54 55 1.133216 CGAGATTTGCTCCTCTCACGA 59.867 52.381 0.00 0.00 40.70 4.35
55 56 1.554392 CGAGATTTGCTCCTCTCACG 58.446 55.000 9.56 0.00 40.70 4.35
56 57 1.205893 ACCGAGATTTGCTCCTCTCAC 59.794 52.381 9.56 0.00 40.70 3.51
57 58 1.478510 GACCGAGATTTGCTCCTCTCA 59.521 52.381 9.56 0.00 40.70 3.27
58 59 1.754226 AGACCGAGATTTGCTCCTCTC 59.246 52.381 0.00 0.00 40.70 3.20
59 60 1.859302 AGACCGAGATTTGCTCCTCT 58.141 50.000 0.00 0.00 40.70 3.69
60 61 2.093973 TCAAGACCGAGATTTGCTCCTC 60.094 50.000 0.00 0.00 40.70 3.71
61 62 1.902508 TCAAGACCGAGATTTGCTCCT 59.097 47.619 0.00 0.00 40.70 3.69
62 63 2.386661 TCAAGACCGAGATTTGCTCC 57.613 50.000 0.00 0.00 40.70 4.70
63 64 2.416893 GGTTCAAGACCGAGATTTGCTC 59.583 50.000 0.00 0.00 39.00 4.26
64 65 2.427506 GGTTCAAGACCGAGATTTGCT 58.572 47.619 0.00 0.00 39.00 3.91
65 66 2.902065 GGTTCAAGACCGAGATTTGC 57.098 50.000 0.00 0.00 39.00 3.68
75 76 3.865745 CCACTGTATCGATGGTTCAAGAC 59.134 47.826 8.54 0.00 0.00 3.01
76 77 3.118775 CCCACTGTATCGATGGTTCAAGA 60.119 47.826 8.54 0.00 0.00 3.02
77 78 3.198068 CCCACTGTATCGATGGTTCAAG 58.802 50.000 8.54 0.00 0.00 3.02
78 79 2.093181 CCCCACTGTATCGATGGTTCAA 60.093 50.000 8.54 0.00 0.00 2.69
79 80 1.484653 CCCCACTGTATCGATGGTTCA 59.515 52.381 8.54 1.55 0.00 3.18
80 81 1.810412 GCCCCACTGTATCGATGGTTC 60.810 57.143 8.54 0.00 0.00 3.62
81 82 0.180406 GCCCCACTGTATCGATGGTT 59.820 55.000 8.54 0.00 0.00 3.67
82 83 1.830145 GCCCCACTGTATCGATGGT 59.170 57.895 8.54 1.38 0.00 3.55
83 84 1.300931 CGCCCCACTGTATCGATGG 60.301 63.158 8.54 0.90 0.00 3.51
84 85 0.597637 GTCGCCCCACTGTATCGATG 60.598 60.000 8.54 0.00 0.00 3.84
85 86 0.755698 AGTCGCCCCACTGTATCGAT 60.756 55.000 2.16 2.16 0.00 3.59
86 87 1.379443 AGTCGCCCCACTGTATCGA 60.379 57.895 0.00 0.00 0.00 3.59
87 88 1.065928 GAGTCGCCCCACTGTATCG 59.934 63.158 0.00 0.00 0.00 2.92
88 89 0.535335 TTGAGTCGCCCCACTGTATC 59.465 55.000 0.00 0.00 0.00 2.24
89 90 0.249398 GTTGAGTCGCCCCACTGTAT 59.751 55.000 0.00 0.00 0.00 2.29
90 91 1.669440 GTTGAGTCGCCCCACTGTA 59.331 57.895 0.00 0.00 0.00 2.74
91 92 2.426023 GTTGAGTCGCCCCACTGT 59.574 61.111 0.00 0.00 0.00 3.55
92 93 2.358737 GGTTGAGTCGCCCCACTG 60.359 66.667 0.00 0.00 0.00 3.66
93 94 2.185310 GATGGTTGAGTCGCCCCACT 62.185 60.000 1.70 0.00 0.00 4.00
94 95 1.745489 GATGGTTGAGTCGCCCCAC 60.745 63.158 1.70 0.00 0.00 4.61
95 96 1.899437 GAGATGGTTGAGTCGCCCCA 61.899 60.000 1.70 0.11 0.00 4.96
96 97 1.153349 GAGATGGTTGAGTCGCCCC 60.153 63.158 1.70 0.00 0.00 5.80
97 98 1.112113 TAGAGATGGTTGAGTCGCCC 58.888 55.000 1.70 0.00 0.00 6.13
117 118 2.628657 GTTGGATATAGAGCACCGACCT 59.371 50.000 0.00 0.00 32.43 3.85
140 141 1.671054 CAACGAACGCCCCACAGAT 60.671 57.895 0.00 0.00 0.00 2.90
235 236 8.756927 TCCAAATCCATATGTTTTGCTAATTCA 58.243 29.630 17.00 0.00 0.00 2.57
247 248 6.613271 ACACTCTCTAGTCCAAATCCATATGT 59.387 38.462 1.24 0.00 31.97 2.29
254 255 6.876257 ACATCAAACACTCTCTAGTCCAAATC 59.124 38.462 0.00 0.00 31.97 2.17
332 338 7.591006 AATGATTGCTTTGCACTCTATTTTG 57.409 32.000 10.37 0.00 38.69 2.44
382 388 9.710900 TTCATGCATAGACTATTTGATTCGTAT 57.289 29.630 0.00 0.00 0.00 3.06
443 454 4.927267 TCTTAGGGCTCTTTGGATTGAA 57.073 40.909 0.00 0.00 0.00 2.69
445 456 5.444176 AGAATCTTAGGGCTCTTTGGATTG 58.556 41.667 11.38 0.00 0.00 2.67
450 461 7.872113 AATGTTAGAATCTTAGGGCTCTTTG 57.128 36.000 0.00 0.00 0.00 2.77
464 475 8.999431 ACATACGTTTCACAGAAATGTTAGAAT 58.001 29.630 18.90 7.15 32.27 2.40
465 476 8.373048 ACATACGTTTCACAGAAATGTTAGAA 57.627 30.769 18.90 5.42 32.27 2.10
466 477 7.956420 ACATACGTTTCACAGAAATGTTAGA 57.044 32.000 18.90 5.71 32.27 2.10
467 478 8.067784 ACAACATACGTTTCACAGAAATGTTAG 58.932 33.333 18.90 14.64 35.08 2.34
478 492 5.910637 TCCTTGTACAACATACGTTTCAC 57.089 39.130 3.59 0.00 31.13 3.18
485 499 9.444600 TCCTAAGAATTTCCTTGTACAACATAC 57.555 33.333 3.59 0.00 0.00 2.39
537 551 9.632807 TTTTTCCTGTGTTAATCGATTTATTGG 57.367 29.630 17.19 11.22 0.00 3.16
595 609 0.035458 CCTCGACATGGATAAGGGCC 59.965 60.000 0.00 0.00 0.00 5.80
626 640 4.780815 TCATTGTTGACTTGGTTCTCTGT 58.219 39.130 0.00 0.00 0.00 3.41
666 680 9.562408 TTCGCATTTTGGTTGGATTATAGTATA 57.438 29.630 0.00 0.00 0.00 1.47
667 681 8.458573 TTCGCATTTTGGTTGGATTATAGTAT 57.541 30.769 0.00 0.00 0.00 2.12
668 682 7.867305 TTCGCATTTTGGTTGGATTATAGTA 57.133 32.000 0.00 0.00 0.00 1.82
669 683 6.767524 TTCGCATTTTGGTTGGATTATAGT 57.232 33.333 0.00 0.00 0.00 2.12
670 684 8.023128 CCTATTCGCATTTTGGTTGGATTATAG 58.977 37.037 0.00 0.00 0.00 1.31
814 834 4.144703 GTCGGAGAAGGGTCGCCC 62.145 72.222 6.80 6.80 45.90 6.13
952 977 1.758514 GACCGGCCTCCAGAGATCA 60.759 63.158 0.00 0.00 0.00 2.92
1137 1162 1.376086 CATGCTGAGACACCCACCA 59.624 57.895 0.00 0.00 0.00 4.17
1263 1288 4.988598 ACCTTGCGGTGGAGCGTG 62.989 66.667 0.00 0.00 43.51 5.34
1354 1379 0.827925 TCCTCGGCGGATAGATTGCT 60.828 55.000 7.21 0.00 36.69 3.91
1488 1513 4.903045 AGAGAAATTACGAACCCCTGAA 57.097 40.909 0.00 0.00 0.00 3.02
1507 1532 3.244770 ACAAATAGCGGAAGGTTGGAAGA 60.245 43.478 0.00 0.00 44.26 2.87
1520 1545 3.745332 TCATGCACTGAACAAATAGCG 57.255 42.857 0.00 0.00 0.00 4.26
1610 1635 3.103080 AGAACTATTGACCTCGGGACT 57.897 47.619 0.00 0.00 0.00 3.85
1680 1745 4.386867 TCTATCTGTCGGTTGTGATTCC 57.613 45.455 0.00 0.00 0.00 3.01
1751 1817 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1752 1818 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1753 1819 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1754 1820 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1755 1821 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1756 1822 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1757 1823 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1758 1824 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1759 1825 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1760 1826 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1761 1827 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1769 1835 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
1770 1836 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
1772 1838 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
1773 1839 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
1835 1901 9.289303 CGTCCCAAAATTCTTGTCTTATATTTG 57.711 33.333 0.00 0.00 0.00 2.32
1836 1902 8.466798 CCGTCCCAAAATTCTTGTCTTATATTT 58.533 33.333 0.00 0.00 0.00 1.40
1837 1903 7.832187 TCCGTCCCAAAATTCTTGTCTTATATT 59.168 33.333 0.00 0.00 0.00 1.28
1838 1904 7.343357 TCCGTCCCAAAATTCTTGTCTTATAT 58.657 34.615 0.00 0.00 0.00 0.86
1839 1905 6.713276 TCCGTCCCAAAATTCTTGTCTTATA 58.287 36.000 0.00 0.00 0.00 0.98
1840 1906 5.566469 TCCGTCCCAAAATTCTTGTCTTAT 58.434 37.500 0.00 0.00 0.00 1.73
1841 1907 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1842 1908 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1843 1909 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1844 1910 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1845 1911 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1846 1912 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1847 1913 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1848 1914 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1849 1915 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1850 1916 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1851 1917 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1852 1918 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1853 1919 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1854 1920 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
1855 1921 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
1856 1922 1.144503 TCTATGTACTCCCTCCGTCCC 59.855 57.143 0.00 0.00 0.00 4.46
1857 1923 2.158638 ACTCTATGTACTCCCTCCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
1858 1924 3.211718 ACTCTATGTACTCCCTCCGTC 57.788 52.381 0.00 0.00 0.00 4.79
1859 1925 3.715834 ACTACTCTATGTACTCCCTCCGT 59.284 47.826 0.00 0.00 0.00 4.69
1860 1926 4.354893 ACTACTCTATGTACTCCCTCCG 57.645 50.000 0.00 0.00 0.00 4.63
1861 1927 5.944135 AGAACTACTCTATGTACTCCCTCC 58.056 45.833 0.00 0.00 30.22 4.30
1862 1928 6.238814 GCAAGAACTACTCTATGTACTCCCTC 60.239 46.154 0.00 0.00 32.46 4.30
1863 1929 5.595133 GCAAGAACTACTCTATGTACTCCCT 59.405 44.000 0.00 0.00 32.46 4.20
1864 1930 5.595133 AGCAAGAACTACTCTATGTACTCCC 59.405 44.000 0.00 0.00 32.46 4.30
1865 1931 6.319152 TCAGCAAGAACTACTCTATGTACTCC 59.681 42.308 0.00 0.00 32.46 3.85
1866 1932 7.148222 TGTCAGCAAGAACTACTCTATGTACTC 60.148 40.741 0.00 0.00 32.46 2.59
1867 1933 6.659668 TGTCAGCAAGAACTACTCTATGTACT 59.340 38.462 0.00 0.00 32.46 2.73
1868 1934 6.853720 TGTCAGCAAGAACTACTCTATGTAC 58.146 40.000 0.00 0.00 32.46 2.90
1869 1935 7.558081 AGATGTCAGCAAGAACTACTCTATGTA 59.442 37.037 0.00 0.00 32.46 2.29
1870 1936 5.984695 TGTCAGCAAGAACTACTCTATGT 57.015 39.130 0.00 0.00 32.46 2.29
1898 1965 5.723295 ACAACATTTTCCCTCATATGCAAC 58.277 37.500 0.00 0.00 0.00 4.17
2359 2427 6.816136 AGTGTGATGAATCATCGGTGTTATA 58.184 36.000 17.31 0.00 43.14 0.98
2537 2605 0.972883 ACTCCTGTGTTCAGCTCCTC 59.027 55.000 0.00 0.00 40.09 3.71
2592 2660 9.339850 CGTATGTACTATATACATAGCCCTTCT 57.660 37.037 6.96 0.00 40.01 2.85
2604 2672 7.383029 GCAACCAACTTGCGTATGTACTATATA 59.617 37.037 0.00 0.00 45.88 0.86
2605 2673 6.202188 GCAACCAACTTGCGTATGTACTATAT 59.798 38.462 0.00 0.00 45.88 0.86
2650 2718 0.755079 CCTGATACTGCCAGCTGCTA 59.245 55.000 8.66 0.00 42.00 3.49
2692 2760 1.621205 TACTGATTGGGGGTGGGGG 60.621 63.158 0.00 0.00 0.00 5.40
2693 2761 1.211567 TGTACTGATTGGGGGTGGGG 61.212 60.000 0.00 0.00 0.00 4.96
2694 2762 0.034477 GTGTACTGATTGGGGGTGGG 60.034 60.000 0.00 0.00 0.00 4.61
2695 2763 0.695924 TGTGTACTGATTGGGGGTGG 59.304 55.000 0.00 0.00 0.00 4.61
2696 2764 1.821216 GTGTGTACTGATTGGGGGTG 58.179 55.000 0.00 0.00 0.00 4.61
2697 2765 0.323629 CGTGTGTACTGATTGGGGGT 59.676 55.000 0.00 0.00 0.00 4.95
2698 2766 1.024579 GCGTGTGTACTGATTGGGGG 61.025 60.000 0.00 0.00 0.00 5.40
2699 2767 0.321210 TGCGTGTGTACTGATTGGGG 60.321 55.000 0.00 0.00 0.00 4.96
2700 2768 0.796312 GTGCGTGTGTACTGATTGGG 59.204 55.000 0.00 0.00 0.00 4.12
2701 2769 0.796312 GGTGCGTGTGTACTGATTGG 59.204 55.000 0.00 0.00 0.00 3.16
2702 2770 1.507562 TGGTGCGTGTGTACTGATTG 58.492 50.000 0.00 0.00 0.00 2.67
2703 2771 2.248280 TTGGTGCGTGTGTACTGATT 57.752 45.000 0.00 0.00 0.00 2.57
2704 2772 2.248280 TTTGGTGCGTGTGTACTGAT 57.752 45.000 0.00 0.00 0.00 2.90
2705 2773 2.025589 TTTTGGTGCGTGTGTACTGA 57.974 45.000 0.00 0.00 0.00 3.41
2706 2774 2.834574 TTTTTGGTGCGTGTGTACTG 57.165 45.000 0.00 0.00 0.00 2.74
2774 2842 2.536997 TTAGGGGCAAGCTCGCTTCC 62.537 60.000 0.00 0.00 33.42 3.46
2806 2874 2.355717 AAGACTAGCTCGCAGACAAC 57.644 50.000 0.00 0.00 0.00 3.32
2814 2882 1.067565 TCAGCACCAAAGACTAGCTCG 60.068 52.381 0.00 0.00 32.35 5.03
2870 2938 4.421479 AAGCTCCTCGGCGACACG 62.421 66.667 4.99 0.00 37.29 4.49
2905 2973 2.281484 TCAGCAACGCCCCTGTTC 60.281 61.111 0.00 0.00 0.00 3.18
2936 3004 3.141488 CCGCTGAGCTACCGAGGT 61.141 66.667 1.78 0.00 35.63 3.85
2945 3013 3.106407 GACGACACACCGCTGAGC 61.106 66.667 0.00 0.00 0.00 4.26
2947 3015 1.372872 CATGACGACACACCGCTGA 60.373 57.895 0.00 0.00 0.00 4.26
2951 3019 0.039527 TGTCTCATGACGACACACCG 60.040 55.000 18.29 0.00 45.70 4.94
2964 3032 1.166129 GAGCAGGTAGACGTGTCTCA 58.834 55.000 5.66 0.00 40.93 3.27
3007 3521 0.887387 GCCCACGCAACCTGAGTTAA 60.887 55.000 0.00 0.00 33.27 2.01
3008 3522 1.302192 GCCCACGCAACCTGAGTTA 60.302 57.895 0.00 0.00 33.27 2.24
3024 3538 1.579429 CAAGCCCAACGTTGTAGCC 59.421 57.895 27.37 14.06 0.00 3.93
3025 3539 1.170290 ACCAAGCCCAACGTTGTAGC 61.170 55.000 25.63 25.33 0.00 3.58
3026 3540 0.591170 CACCAAGCCCAACGTTGTAG 59.409 55.000 25.63 17.61 0.00 2.74
3124 3638 1.026718 GCTCTTGCCGCACCAAGTAT 61.027 55.000 11.68 0.00 42.16 2.12
3185 3701 0.909610 TGGGAGGCTACCAACTCAGG 60.910 60.000 18.43 0.00 34.44 3.86
3194 3710 0.548510 AAGCTGGATTGGGAGGCTAC 59.451 55.000 0.00 0.00 32.64 3.58
3213 3729 2.372264 GCCATCTTTGATGAAGAGGCA 58.628 47.619 16.94 0.00 46.99 4.75
3280 3796 1.358877 CATCATCGTCGCACCTTTCA 58.641 50.000 0.00 0.00 0.00 2.69
3418 3934 7.487822 TGGTTTGATTTGCCCTGAAATATTA 57.512 32.000 0.00 0.00 0.00 0.98
3428 3944 1.135112 GGTCGATGGTTTGATTTGCCC 60.135 52.381 0.00 0.00 0.00 5.36
3429 3945 1.135112 GGGTCGATGGTTTGATTTGCC 60.135 52.381 0.00 0.00 0.00 4.52
3441 3957 2.829043 TTTCACGCGAGGGGTCGATG 62.829 60.000 15.93 0.00 34.64 3.84
3582 4098 8.873830 CATATCATTTTGAGTATGGTCGGATAC 58.126 37.037 0.00 0.00 0.00 2.24
3586 4102 5.997746 ACCATATCATTTTGAGTATGGTCGG 59.002 40.000 16.99 0.00 41.67 4.79
3659 4175 3.384789 ACACACACACACTCACTCTACAT 59.615 43.478 0.00 0.00 0.00 2.29
3666 4182 1.128507 CACACACACACACACACTCAC 59.871 52.381 0.00 0.00 0.00 3.51
3667 4183 1.270571 ACACACACACACACACACTCA 60.271 47.619 0.00 0.00 0.00 3.41
3668 4184 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
3669 4185 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
3670 4186 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3671 4187 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3672 4188 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3673 4189 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3674 4190 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3675 4191 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
3676 4192 1.393539 GAGACACACACACACACACAC 59.606 52.381 0.00 0.00 0.00 3.82
3677 4193 1.674519 GGAGACACACACACACACACA 60.675 52.381 0.00 0.00 0.00 3.72
3698 4220 2.369983 ATATTCCTACACGTCCGGGA 57.630 50.000 0.00 0.00 0.00 5.14
3781 4310 7.919690 TGTATTTCACAATAATACTGCAGAGC 58.080 34.615 23.35 0.00 38.61 4.09
3806 4335 7.834181 ACAATGGTTACACAATAATTAGGAGCT 59.166 33.333 0.00 0.00 0.00 4.09
3837 4366 5.880054 ACCCATGTAAAAAGACAGAATCG 57.120 39.130 0.00 0.00 31.51 3.34
3849 4378 5.091552 AGAACCAGAGAGTACCCATGTAAA 58.908 41.667 0.00 0.00 0.00 2.01
3857 4386 8.794335 AAAATATTCAAGAACCAGAGAGTACC 57.206 34.615 0.00 0.00 0.00 3.34
4070 4600 5.751586 TCAGAAACATCAAACCCCCTATAC 58.248 41.667 0.00 0.00 0.00 1.47
4071 4601 6.395780 TTCAGAAACATCAAACCCCCTATA 57.604 37.500 0.00 0.00 0.00 1.31
4329 4859 5.856126 CGTAGGTCAATTGCTTAGTTTCA 57.144 39.130 0.00 0.00 0.00 2.69
4402 4932 9.643693 CAACAGAAAACATGCTCCTATTAAAAT 57.356 29.630 0.00 0.00 0.00 1.82
4403 4933 7.598493 GCAACAGAAAACATGCTCCTATTAAAA 59.402 33.333 0.00 0.00 35.93 1.52
4404 4934 7.090173 GCAACAGAAAACATGCTCCTATTAAA 58.910 34.615 0.00 0.00 35.93 1.52
4405 4935 6.208402 TGCAACAGAAAACATGCTCCTATTAA 59.792 34.615 0.00 0.00 39.49 1.40
4406 4936 5.709631 TGCAACAGAAAACATGCTCCTATTA 59.290 36.000 0.00 0.00 39.49 0.98
4407 4937 4.523943 TGCAACAGAAAACATGCTCCTATT 59.476 37.500 0.00 0.00 39.49 1.73
4408 4938 4.081406 TGCAACAGAAAACATGCTCCTAT 58.919 39.130 0.00 0.00 39.49 2.57
4409 4939 3.485394 TGCAACAGAAAACATGCTCCTA 58.515 40.909 0.00 0.00 39.49 2.94
4410 4940 2.309613 TGCAACAGAAAACATGCTCCT 58.690 42.857 0.00 0.00 39.49 3.69
4411 4941 2.798976 TGCAACAGAAAACATGCTCC 57.201 45.000 0.00 0.00 39.49 4.70
4412 4942 5.922544 ACTATTTGCAACAGAAAACATGCTC 59.077 36.000 12.96 0.00 39.49 4.26
4413 4943 5.846203 ACTATTTGCAACAGAAAACATGCT 58.154 33.333 12.96 0.00 39.49 3.79
4414 4944 7.816945 ATACTATTTGCAACAGAAAACATGC 57.183 32.000 12.96 0.00 39.22 4.06
4490 5020 4.047822 GAGTAACATTCTGCGATCTCTGG 58.952 47.826 0.00 0.00 0.00 3.86
4494 5024 3.034635 AGGGAGTAACATTCTGCGATCT 58.965 45.455 0.00 0.00 0.00 2.75
4495 5025 3.385577 GAGGGAGTAACATTCTGCGATC 58.614 50.000 0.00 0.00 0.00 3.69
4496 5026 2.103263 GGAGGGAGTAACATTCTGCGAT 59.897 50.000 0.00 0.00 0.00 4.58
4497 5027 1.480954 GGAGGGAGTAACATTCTGCGA 59.519 52.381 0.00 0.00 0.00 5.10
4675 5207 5.419542 GAACATCTGACCACAATACTAGCA 58.580 41.667 0.00 0.00 0.00 3.49
4700 5232 7.050970 TGTGTTACTAACAAGAGACTGACAT 57.949 36.000 3.10 0.00 44.16 3.06
4718 5250 8.918202 AGTTCAACTGGATTAAGAATGTGTTA 57.082 30.769 0.00 0.00 0.00 2.41
4721 5253 8.971321 CAAAAGTTCAACTGGATTAAGAATGTG 58.029 33.333 0.00 0.00 0.00 3.21
4751 5283 5.591067 CCGGATTTAGCCTATTTTTGTGGTA 59.409 40.000 0.00 0.00 0.00 3.25
4752 5284 4.401202 CCGGATTTAGCCTATTTTTGTGGT 59.599 41.667 0.00 0.00 0.00 4.16
4992 5524 7.287061 TGGACCTGAAAAGAGAGAACAAATAA 58.713 34.615 0.00 0.00 0.00 1.40
5202 5734 7.744733 TGCATAATTCTGTATAGTGGAATGGA 58.255 34.615 0.00 0.00 31.21 3.41
5234 5766 6.769512 AGCATCTAGACCAACAGAACTTTTA 58.230 36.000 0.00 0.00 0.00 1.52
5309 5841 2.092592 ACCGGAAGAAACAACTCCAAGT 60.093 45.455 9.46 0.00 0.00 3.16
5549 6081 5.293079 GTCTAGAGGAGTGAAACAATCATGC 59.707 44.000 0.00 0.00 40.97 4.06
5855 6387 3.487544 GGTCAAGAATTACAGAATGCCGC 60.488 47.826 0.00 0.00 42.53 6.53
5864 6396 5.316167 AGCAACTGATGGTCAAGAATTACA 58.684 37.500 0.00 0.00 33.56 2.41
6050 6582 6.129179 TCCATAAAATGAAGTCCCATCCTTC 58.871 40.000 0.00 0.00 39.01 3.46
6281 6813 7.393234 TGCTGTTGTAAAGAAATGCTACCTAAT 59.607 33.333 0.00 0.00 0.00 1.73
6419 6951 7.872113 AATCTAGCAGATTCCCTAAAAACTG 57.128 36.000 5.80 0.00 40.75 3.16
6889 7425 3.065371 CGGAAAACCTTGATAGGCACATC 59.935 47.826 0.00 0.00 46.22 3.06
7108 7644 2.363795 AGCCTAGCCGTGTGCCTA 60.364 61.111 0.00 0.00 42.71 3.93
7294 7830 3.605231 CGTTAAAGTTACACAGGGCAACG 60.605 47.826 0.00 0.00 37.60 4.10
7358 7894 5.559035 GCACTTGCGGATAAATACAGATGAC 60.559 44.000 0.00 0.00 0.00 3.06
7600 8138 3.641439 CACGCTAGTGTAATTCTGTGC 57.359 47.619 8.97 0.00 43.15 4.57
7653 8192 1.344763 CCTCCGATCAGGGACATAACC 59.655 57.143 0.00 0.00 41.52 2.85
7733 10714 3.452627 TCTTCATCCTCTGCTTTCTACCC 59.547 47.826 0.00 0.00 0.00 3.69
7750 10731 6.647067 GGAAGAAGAAAAGAGAACGATCTTCA 59.353 38.462 14.19 0.00 45.26 3.02
7768 10755 5.781210 AGGAAGAAGCAAAAAGGAAGAAG 57.219 39.130 0.00 0.00 0.00 2.85
7769 10756 6.544928 AAAGGAAGAAGCAAAAAGGAAGAA 57.455 33.333 0.00 0.00 0.00 2.52
7770 10757 6.544928 AAAAGGAAGAAGCAAAAAGGAAGA 57.455 33.333 0.00 0.00 0.00 2.87
7771 10758 6.457392 GCAAAAAGGAAGAAGCAAAAAGGAAG 60.457 38.462 0.00 0.00 0.00 3.46
7772 10759 5.353956 GCAAAAAGGAAGAAGCAAAAAGGAA 59.646 36.000 0.00 0.00 0.00 3.36
7773 10760 4.875536 GCAAAAAGGAAGAAGCAAAAAGGA 59.124 37.500 0.00 0.00 0.00 3.36
7774 10761 4.635324 TGCAAAAAGGAAGAAGCAAAAAGG 59.365 37.500 0.00 0.00 0.00 3.11
7775 10762 5.799681 TGCAAAAAGGAAGAAGCAAAAAG 57.200 34.783 0.00 0.00 0.00 2.27
7776 10763 6.756299 ATTGCAAAAAGGAAGAAGCAAAAA 57.244 29.167 1.71 0.00 43.97 1.94
7777 10764 6.553524 CAATTGCAAAAAGGAAGAAGCAAAA 58.446 32.000 1.71 0.00 43.97 2.44
7778 10765 5.448904 GCAATTGCAAAAAGGAAGAAGCAAA 60.449 36.000 25.36 0.00 43.97 3.68
7779 10766 4.035441 GCAATTGCAAAAAGGAAGAAGCAA 59.965 37.500 25.36 0.00 44.73 3.91
7780 10767 3.560896 GCAATTGCAAAAAGGAAGAAGCA 59.439 39.130 25.36 0.00 41.59 3.91
7781 10768 3.363280 CGCAATTGCAAAAAGGAAGAAGC 60.363 43.478 28.77 0.00 42.21 3.86
7782 10769 3.803778 ACGCAATTGCAAAAAGGAAGAAG 59.196 39.130 28.77 10.86 42.21 2.85
7783 10770 3.791245 ACGCAATTGCAAAAAGGAAGAA 58.209 36.364 28.77 0.00 42.21 2.52
7784 10771 3.451141 ACGCAATTGCAAAAAGGAAGA 57.549 38.095 28.77 0.00 42.21 2.87
7825 10812 8.709308 AGCTAGTCTTCAACCATGTAATCTAAT 58.291 33.333 0.00 0.00 0.00 1.73
7843 10830 1.469308 GTGTGCACTCGTAGCTAGTCT 59.531 52.381 19.41 0.00 0.00 3.24
7859 10846 1.705337 CCTAAATGCGCCTCCGTGTG 61.705 60.000 4.18 0.00 36.67 3.82
7860 10847 1.449601 CCTAAATGCGCCTCCGTGT 60.450 57.895 4.18 0.00 36.67 4.49
7947 11225 8.593945 TGGGCTCAATAATCAAAACTCTTTAT 57.406 30.769 0.00 0.00 0.00 1.40
8019 11318 0.107831 TCCAAGAACACCAACTCCCG 59.892 55.000 0.00 0.00 0.00 5.14
8055 11354 9.683069 CGTTCTACTAGTTGACCTTAAAGTTTA 57.317 33.333 6.52 0.00 0.00 2.01
8057 11356 6.644181 GCGTTCTACTAGTTGACCTTAAAGTT 59.356 38.462 6.52 0.00 0.00 2.66
8071 11370 4.396854 GCACGGGCGTTCTACTAG 57.603 61.111 0.00 0.00 0.00 2.57
8089 11388 3.653539 ATTTAAAAGGCCCGTGACAAC 57.346 42.857 0.00 0.00 0.00 3.32
8090 11389 4.674281 AAATTTAAAAGGCCCGTGACAA 57.326 36.364 0.00 0.00 0.00 3.18
8091 11390 4.501743 GGAAAATTTAAAAGGCCCGTGACA 60.502 41.667 0.00 0.00 0.00 3.58
8092 11391 3.991773 GGAAAATTTAAAAGGCCCGTGAC 59.008 43.478 0.00 0.00 0.00 3.67
8093 11392 3.898741 AGGAAAATTTAAAAGGCCCGTGA 59.101 39.130 0.00 0.00 0.00 4.35
8094 11393 3.993736 CAGGAAAATTTAAAAGGCCCGTG 59.006 43.478 0.00 0.00 0.00 4.94
8095 11394 3.898741 TCAGGAAAATTTAAAAGGCCCGT 59.101 39.130 0.00 0.00 0.00 5.28
8096 11395 4.529109 TCAGGAAAATTTAAAAGGCCCG 57.471 40.909 0.00 0.00 0.00 6.13
8097 11396 7.390823 TGTAATCAGGAAAATTTAAAAGGCCC 58.609 34.615 0.00 0.00 0.00 5.80
8098 11397 9.098355 GATGTAATCAGGAAAATTTAAAAGGCC 57.902 33.333 0.00 0.00 44.70 5.19
8137 11436 4.106029 AGACATGCAGATTTTGACATGC 57.894 40.909 0.00 0.00 41.20 4.06
8138 11437 6.673154 TCTAGACATGCAGATTTTGACATG 57.327 37.500 0.00 0.00 42.21 3.21
8139 11438 7.692460 TTTCTAGACATGCAGATTTTGACAT 57.308 32.000 0.00 0.00 0.00 3.06
8140 11439 7.509141 TTTTCTAGACATGCAGATTTTGACA 57.491 32.000 0.00 0.00 0.00 3.58
8141 11440 8.292448 TCTTTTTCTAGACATGCAGATTTTGAC 58.708 33.333 0.00 0.00 0.00 3.18
8142 11441 8.394971 TCTTTTTCTAGACATGCAGATTTTGA 57.605 30.769 0.00 0.00 0.00 2.69
8145 11444 8.619546 GCTATCTTTTTCTAGACATGCAGATTT 58.380 33.333 0.00 0.00 0.00 2.17
8146 11445 7.772292 TGCTATCTTTTTCTAGACATGCAGATT 59.228 33.333 0.00 0.00 0.00 2.40
8147 11446 7.226325 GTGCTATCTTTTTCTAGACATGCAGAT 59.774 37.037 0.00 0.00 32.00 2.90
8148 11447 6.536582 GTGCTATCTTTTTCTAGACATGCAGA 59.463 38.462 0.00 0.00 32.00 4.26
8149 11448 6.314648 TGTGCTATCTTTTTCTAGACATGCAG 59.685 38.462 0.00 0.00 32.00 4.41
8150 11449 6.092670 GTGTGCTATCTTTTTCTAGACATGCA 59.907 38.462 0.00 0.00 0.00 3.96
8151 11450 6.092670 TGTGTGCTATCTTTTTCTAGACATGC 59.907 38.462 0.00 0.00 0.00 4.06
8152 11451 7.601073 TGTGTGCTATCTTTTTCTAGACATG 57.399 36.000 0.00 0.00 0.00 3.21
8153 11452 7.880195 AGTTGTGTGCTATCTTTTTCTAGACAT 59.120 33.333 0.00 0.00 0.00 3.06
8154 11453 7.217200 AGTTGTGTGCTATCTTTTTCTAGACA 58.783 34.615 0.00 0.00 0.00 3.41
8155 11454 7.659652 AGTTGTGTGCTATCTTTTTCTAGAC 57.340 36.000 0.00 0.00 0.00 2.59
8156 11455 9.944376 AATAGTTGTGTGCTATCTTTTTCTAGA 57.056 29.630 0.00 0.00 0.00 2.43
8157 11456 9.979270 CAATAGTTGTGTGCTATCTTTTTCTAG 57.021 33.333 0.00 0.00 0.00 2.43
8158 11457 8.946085 CCAATAGTTGTGTGCTATCTTTTTCTA 58.054 33.333 0.00 0.00 0.00 2.10
8159 11458 7.665559 TCCAATAGTTGTGTGCTATCTTTTTCT 59.334 33.333 0.00 0.00 0.00 2.52
8160 11459 7.750903 GTCCAATAGTTGTGTGCTATCTTTTTC 59.249 37.037 0.00 0.00 0.00 2.29
8161 11460 7.230510 TGTCCAATAGTTGTGTGCTATCTTTTT 59.769 33.333 0.00 0.00 0.00 1.94
8162 11461 6.714810 TGTCCAATAGTTGTGTGCTATCTTTT 59.285 34.615 0.00 0.00 0.00 2.27
8163 11462 6.237901 TGTCCAATAGTTGTGTGCTATCTTT 58.762 36.000 0.00 0.00 0.00 2.52
8164 11463 5.804639 TGTCCAATAGTTGTGTGCTATCTT 58.195 37.500 0.00 0.00 0.00 2.40
8165 11464 5.420725 TGTCCAATAGTTGTGTGCTATCT 57.579 39.130 0.00 0.00 0.00 1.98
8166 11465 4.034510 GCTGTCCAATAGTTGTGTGCTATC 59.965 45.833 0.00 0.00 0.00 2.08
8167 11466 3.941483 GCTGTCCAATAGTTGTGTGCTAT 59.059 43.478 0.00 0.00 0.00 2.97
8168 11467 3.007940 AGCTGTCCAATAGTTGTGTGCTA 59.992 43.478 0.00 0.00 0.00 3.49
8169 11468 2.154462 GCTGTCCAATAGTTGTGTGCT 58.846 47.619 0.00 0.00 0.00 4.40
8170 11469 2.154462 AGCTGTCCAATAGTTGTGTGC 58.846 47.619 0.00 0.00 0.00 4.57
8171 11470 5.643348 TCAATAGCTGTCCAATAGTTGTGTG 59.357 40.000 0.00 0.00 0.00 3.82
8172 11471 5.804639 TCAATAGCTGTCCAATAGTTGTGT 58.195 37.500 0.00 0.00 0.00 3.72
8173 11472 6.741992 TTCAATAGCTGTCCAATAGTTGTG 57.258 37.500 0.00 0.00 0.00 3.33
8174 11473 7.067494 GGATTTCAATAGCTGTCCAATAGTTGT 59.933 37.037 0.00 0.00 0.00 3.32
8175 11474 7.067372 TGGATTTCAATAGCTGTCCAATAGTTG 59.933 37.037 0.00 0.00 33.15 3.16
8176 11475 7.067494 GTGGATTTCAATAGCTGTCCAATAGTT 59.933 37.037 0.00 0.00 37.48 2.24
8177 11476 6.543831 GTGGATTTCAATAGCTGTCCAATAGT 59.456 38.462 0.00 0.00 37.48 2.12
8178 11477 6.769822 AGTGGATTTCAATAGCTGTCCAATAG 59.230 38.462 0.00 0.00 37.48 1.73
8179 11478 6.662755 AGTGGATTTCAATAGCTGTCCAATA 58.337 36.000 0.00 0.00 37.48 1.90
8180 11479 5.513233 AGTGGATTTCAATAGCTGTCCAAT 58.487 37.500 0.00 0.00 37.48 3.16
8181 11480 4.922206 AGTGGATTTCAATAGCTGTCCAA 58.078 39.130 0.00 0.00 37.48 3.53
8182 11481 4.574674 AGTGGATTTCAATAGCTGTCCA 57.425 40.909 0.00 0.00 33.63 4.02
8183 11482 4.943705 TGAAGTGGATTTCAATAGCTGTCC 59.056 41.667 0.00 0.00 34.32 4.02
8184 11483 5.645497 ACTGAAGTGGATTTCAATAGCTGTC 59.355 40.000 0.00 0.00 36.69 3.51
8185 11484 5.413833 CACTGAAGTGGATTTCAATAGCTGT 59.586 40.000 0.00 0.00 42.10 4.40
8186 11485 5.877031 CACTGAAGTGGATTTCAATAGCTG 58.123 41.667 0.00 0.00 42.10 4.24
8198 11497 7.255906 AATGAAAATGCATTACACTGAAGTGGA 60.256 33.333 13.39 3.10 39.31 4.02
8199 11498 6.869913 AATGAAAATGCATTACACTGAAGTGG 59.130 34.615 13.39 0.00 39.31 4.00
8200 11499 7.878477 AATGAAAATGCATTACACTGAAGTG 57.122 32.000 13.39 8.91 40.03 3.16
8201 11500 9.979578 TTTAATGAAAATGCATTACACTGAAGT 57.020 25.926 13.39 0.00 39.66 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.