Multiple sequence alignment - TraesCS5A01G098400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G098400 chr5A 100.000 3431 0 0 1 3431 139687270 139683840 0.000000e+00 6336.0
1 TraesCS5A01G098400 chr5B 94.473 2913 97 25 530 3431 138352790 138349931 0.000000e+00 4429.0
2 TraesCS5A01G098400 chr5B 90.173 173 16 1 1913 2085 140967430 140967601 1.240000e-54 224.0
3 TraesCS5A01G098400 chr5D 95.143 2409 83 9 530 2906 125732848 125735254 0.000000e+00 3770.0
4 TraesCS5A01G098400 chr5D 88.820 322 28 4 2948 3264 125735258 125735576 4.150000e-104 388.0
5 TraesCS5A01G098400 chr5D 91.144 271 16 5 3162 3431 125735577 125735840 9.050000e-96 361.0
6 TraesCS5A01G098400 chr5D 83.587 329 34 12 6 333 539037652 539037961 1.200000e-74 291.0
7 TraesCS5A01G098400 chr5D 90.566 159 15 0 1917 2075 541688164 541688006 9.650000e-51 211.0
8 TraesCS5A01G098400 chr5D 88.439 173 20 0 1913 2085 128579110 128579282 3.470000e-50 209.0
9 TraesCS5A01G098400 chr5D 77.810 347 35 11 1 345 109578878 109578572 3.520000e-40 176.0
10 TraesCS5A01G098400 chr2B 83.500 400 62 2 6 405 738510832 738510437 1.500000e-98 370.0
11 TraesCS5A01G098400 chr2B 80.617 227 38 3 108 333 525253662 525253883 1.640000e-38 171.0
12 TraesCS5A01G098400 chr3A 81.384 419 68 7 2 415 545452860 545453273 1.970000e-87 333.0
13 TraesCS5A01G098400 chr4B 82.620 374 61 2 42 415 541368917 541369286 9.180000e-86 327.0
14 TraesCS5A01G098400 chr4B 81.957 327 52 5 89 414 9074061 9074381 1.570000e-68 270.0
15 TraesCS5A01G098400 chr6D 78.556 471 85 9 1 460 25702217 25701752 2.590000e-76 296.0
16 TraesCS5A01G098400 chr6D 78.049 328 59 8 1 322 437400301 437399981 9.720000e-46 195.0
17 TraesCS5A01G098400 chr4D 92.308 156 10 2 1920 2074 190474142 190473988 1.600000e-53 220.0
18 TraesCS5A01G098400 chr1D 76.559 465 72 13 1 456 408208865 408208429 1.600000e-53 220.0
19 TraesCS5A01G098400 chr1D 90.385 156 15 0 1920 2075 409494412 409494257 4.490000e-49 206.0
20 TraesCS5A01G098400 chr6B 91.026 156 14 0 1920 2075 53650690 53650535 9.650000e-51 211.0
21 TraesCS5A01G098400 chr6B 83.721 172 18 8 153 322 707802600 707802763 1.650000e-33 154.0
22 TraesCS5A01G098400 chr2D 89.937 159 16 0 1917 2075 331758787 331758945 4.490000e-49 206.0
23 TraesCS5A01G098400 chr2D 72.877 424 74 22 1 408 157033993 157033595 1.300000e-19 108.0
24 TraesCS5A01G098400 chr2D 93.750 48 3 0 1 48 311560879 311560926 4.750000e-09 73.1
25 TraesCS5A01G098400 chr3D 80.074 271 45 6 87 354 307193377 307193641 3.490000e-45 193.0
26 TraesCS5A01G098400 chr3B 75.743 404 77 13 21 416 557102624 557103014 2.100000e-42 183.0
27 TraesCS5A01G098400 chr7D 77.460 315 62 6 6 318 83408694 83408387 2.720000e-41 180.0
28 TraesCS5A01G098400 chr1B 74.390 246 50 12 2 240 548908481 548908242 3.650000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G098400 chr5A 139683840 139687270 3430 True 6336.000000 6336 100.000000 1 3431 1 chr5A.!!$R1 3430
1 TraesCS5A01G098400 chr5B 138349931 138352790 2859 True 4429.000000 4429 94.473000 530 3431 1 chr5B.!!$R1 2901
2 TraesCS5A01G098400 chr5D 125732848 125735840 2992 False 1506.333333 3770 91.702333 530 3431 3 chr5D.!!$F3 2901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.031449 GATGTCGCTAGAGCCTGGTC 59.969 60.0 0.0 0.0 37.91 4.02 F
390 391 0.032678 AGTCAGACCAGCGTTGAGTG 59.967 55.0 0.0 0.0 0.00 3.51 F
396 397 0.105964 ACCAGCGTTGAGTGTAAGCA 59.894 50.0 0.0 0.0 0.00 3.91 F
663 664 0.389426 CCGTCCGTTCGTCTCCATTT 60.389 55.0 0.0 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1689 0.466922 CCACCCTTGCATCCATCTCC 60.467 60.000 0.0 0.0 0.00 3.71 R
2035 2062 0.473694 TCCTCCAACTCAGCCCTCAA 60.474 55.000 0.0 0.0 0.00 3.02 R
2229 2256 1.205655 CTCAACTCTCCAATCTCGCCA 59.794 52.381 0.0 0.0 0.00 5.69 R
2659 2686 0.459489 TTGCCCTGACAGCAAAACAC 59.541 50.000 0.0 0.0 46.71 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.435515 GAGTACCTCGAGCAGCTGG 59.564 63.158 17.12 0.00 0.00 4.85
29 30 1.000771 AGTACCTCGAGCAGCTGGA 60.001 57.895 17.12 2.36 0.00 3.86
30 31 1.034838 AGTACCTCGAGCAGCTGGAG 61.035 60.000 23.97 23.97 36.35 3.86
31 32 2.418910 TACCTCGAGCAGCTGGAGC 61.419 63.158 25.17 0.07 35.48 4.70
60 61 1.574263 AGGAGGACCTTCTTGCCTAC 58.426 55.000 0.00 0.00 45.36 3.18
61 62 0.175989 GGAGGACCTTCTTGCCTACG 59.824 60.000 0.00 0.00 30.70 3.51
62 63 0.175989 GAGGACCTTCTTGCCTACGG 59.824 60.000 0.00 0.00 30.70 4.02
63 64 0.544595 AGGACCTTCTTGCCTACGGT 60.545 55.000 0.00 0.00 0.00 4.83
64 65 0.391263 GGACCTTCTTGCCTACGGTG 60.391 60.000 0.00 0.00 0.00 4.94
65 66 0.391263 GACCTTCTTGCCTACGGTGG 60.391 60.000 0.00 0.00 0.00 4.61
66 67 0.834687 ACCTTCTTGCCTACGGTGGA 60.835 55.000 0.00 0.00 0.00 4.02
67 68 0.391263 CCTTCTTGCCTACGGTGGAC 60.391 60.000 0.00 0.00 0.00 4.02
68 69 0.391263 CTTCTTGCCTACGGTGGACC 60.391 60.000 0.00 0.00 0.00 4.46
69 70 1.122632 TTCTTGCCTACGGTGGACCA 61.123 55.000 0.00 0.00 35.14 4.02
70 71 1.079127 CTTGCCTACGGTGGACCAG 60.079 63.158 0.00 0.00 35.14 4.00
71 72 3.248446 TTGCCTACGGTGGACCAGC 62.248 63.158 13.93 13.93 35.14 4.85
72 73 4.468689 GCCTACGGTGGACCAGCC 62.469 72.222 17.88 10.15 35.14 4.85
73 74 2.683933 CCTACGGTGGACCAGCCT 60.684 66.667 17.88 9.14 37.63 4.58
74 75 1.380785 CCTACGGTGGACCAGCCTA 60.381 63.158 17.88 9.81 37.63 3.93
75 76 1.392710 CCTACGGTGGACCAGCCTAG 61.393 65.000 17.88 17.86 37.63 3.02
76 77 2.017559 CTACGGTGGACCAGCCTAGC 62.018 65.000 17.88 0.00 37.63 3.42
77 78 4.162690 CGGTGGACCAGCCTAGCC 62.163 72.222 17.88 2.23 37.63 3.93
78 79 3.009115 GGTGGACCAGCCTAGCCA 61.009 66.667 12.93 0.00 37.63 4.75
79 80 2.602676 GGTGGACCAGCCTAGCCAA 61.603 63.158 12.93 0.00 37.63 4.52
80 81 1.377333 GTGGACCAGCCTAGCCAAC 60.377 63.158 0.00 0.00 37.63 3.77
81 82 2.125106 GGACCAGCCTAGCCAACG 60.125 66.667 0.00 0.00 0.00 4.10
82 83 2.656069 GGACCAGCCTAGCCAACGA 61.656 63.158 0.00 0.00 0.00 3.85
83 84 1.448013 GACCAGCCTAGCCAACGAC 60.448 63.158 0.00 0.00 0.00 4.34
84 85 2.125106 CCAGCCTAGCCAACGACC 60.125 66.667 0.00 0.00 0.00 4.79
85 86 2.662596 CAGCCTAGCCAACGACCA 59.337 61.111 0.00 0.00 0.00 4.02
86 87 1.221840 CAGCCTAGCCAACGACCAT 59.778 57.895 0.00 0.00 0.00 3.55
87 88 0.464036 CAGCCTAGCCAACGACCATA 59.536 55.000 0.00 0.00 0.00 2.74
88 89 0.464452 AGCCTAGCCAACGACCATAC 59.536 55.000 0.00 0.00 0.00 2.39
89 90 0.177141 GCCTAGCCAACGACCATACA 59.823 55.000 0.00 0.00 0.00 2.29
90 91 1.806623 GCCTAGCCAACGACCATACAG 60.807 57.143 0.00 0.00 0.00 2.74
91 92 1.571919 CTAGCCAACGACCATACAGC 58.428 55.000 0.00 0.00 0.00 4.40
92 93 0.177141 TAGCCAACGACCATACAGCC 59.823 55.000 0.00 0.00 0.00 4.85
93 94 2.112815 GCCAACGACCATACAGCCC 61.113 63.158 0.00 0.00 0.00 5.19
94 95 1.813753 CCAACGACCATACAGCCCG 60.814 63.158 0.00 0.00 0.00 6.13
95 96 2.125269 AACGACCATACAGCCCGC 60.125 61.111 0.00 0.00 0.00 6.13
96 97 4.508128 ACGACCATACAGCCCGCG 62.508 66.667 0.00 0.00 0.00 6.46
115 116 4.903730 CGGACGATGTCGCTAGAG 57.096 61.111 1.77 0.00 44.43 2.43
116 117 1.369448 CGGACGATGTCGCTAGAGC 60.369 63.158 1.77 0.00 44.43 4.09
117 118 1.008309 GGACGATGTCGCTAGAGCC 60.008 63.158 1.77 0.00 44.43 4.70
118 119 1.448922 GGACGATGTCGCTAGAGCCT 61.449 60.000 1.77 0.00 44.43 4.58
119 120 0.317436 GACGATGTCGCTAGAGCCTG 60.317 60.000 1.77 0.00 44.43 4.85
120 121 1.007964 CGATGTCGCTAGAGCCTGG 60.008 63.158 0.00 0.00 37.91 4.45
121 122 1.729470 CGATGTCGCTAGAGCCTGGT 61.729 60.000 0.00 0.00 37.91 4.00
122 123 0.031449 GATGTCGCTAGAGCCTGGTC 59.969 60.000 0.00 0.00 37.91 4.02
123 124 1.729470 ATGTCGCTAGAGCCTGGTCG 61.729 60.000 0.00 0.00 37.91 4.79
124 125 2.113433 GTCGCTAGAGCCTGGTCGA 61.113 63.158 0.00 0.00 37.91 4.20
125 126 2.113433 TCGCTAGAGCCTGGTCGAC 61.113 63.158 7.13 7.13 37.91 4.20
126 127 2.409651 GCTAGAGCCTGGTCGACG 59.590 66.667 9.92 0.00 34.31 5.12
127 128 3.111939 CTAGAGCCTGGTCGACGG 58.888 66.667 9.92 7.32 0.00 4.79
128 129 3.127352 CTAGAGCCTGGTCGACGGC 62.127 68.421 22.53 22.53 46.65 5.68
133 134 4.052229 CCTGGTCGACGGCGTTCT 62.052 66.667 16.19 0.00 38.98 3.01
134 135 2.504244 CTGGTCGACGGCGTTCTC 60.504 66.667 16.19 7.37 38.98 2.87
135 136 2.979197 CTGGTCGACGGCGTTCTCT 61.979 63.158 16.19 0.00 38.98 3.10
136 137 2.257676 GGTCGACGGCGTTCTCTT 59.742 61.111 16.19 0.00 38.98 2.85
137 138 2.087009 GGTCGACGGCGTTCTCTTG 61.087 63.158 16.19 0.31 38.98 3.02
138 139 2.087009 GTCGACGGCGTTCTCTTGG 61.087 63.158 16.19 0.00 38.98 3.61
139 140 2.257371 CGACGGCGTTCTCTTGGA 59.743 61.111 16.19 0.00 0.00 3.53
140 141 2.087009 CGACGGCGTTCTCTTGGAC 61.087 63.158 16.19 0.00 0.00 4.02
141 142 1.289380 GACGGCGTTCTCTTGGACT 59.711 57.895 16.19 0.00 0.00 3.85
142 143 1.006102 ACGGCGTTCTCTTGGACTG 60.006 57.895 6.77 0.00 0.00 3.51
143 144 1.738099 CGGCGTTCTCTTGGACTGG 60.738 63.158 0.00 0.00 0.00 4.00
144 145 2.035442 GGCGTTCTCTTGGACTGGC 61.035 63.158 0.00 0.00 0.00 4.85
145 146 2.035442 GCGTTCTCTTGGACTGGCC 61.035 63.158 0.00 0.00 37.10 5.36
146 147 1.376037 CGTTCTCTTGGACTGGCCC 60.376 63.158 0.00 0.00 34.97 5.80
147 148 1.376037 GTTCTCTTGGACTGGCCCG 60.376 63.158 0.00 0.00 34.97 6.13
148 149 2.592993 TTCTCTTGGACTGGCCCGG 61.593 63.158 0.00 0.00 34.97 5.73
149 150 4.785453 CTCTTGGACTGGCCCGGC 62.785 72.222 0.00 0.00 34.97 6.13
168 169 3.099438 TCGACGCTCATCGACCTC 58.901 61.111 0.00 0.00 45.84 3.85
169 170 1.743995 TCGACGCTCATCGACCTCA 60.744 57.895 0.00 0.00 45.84 3.86
170 171 1.583967 CGACGCTCATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
171 172 1.803943 GACGCTCATCGACCTCACT 59.196 57.895 0.00 0.00 41.67 3.41
172 173 0.524392 GACGCTCATCGACCTCACTG 60.524 60.000 0.00 0.00 41.67 3.66
173 174 1.226802 CGCTCATCGACCTCACTGG 60.227 63.158 0.00 0.00 41.67 4.00
174 175 1.520342 GCTCATCGACCTCACTGGC 60.520 63.158 0.00 0.00 40.22 4.85
175 176 1.142748 CTCATCGACCTCACTGGCC 59.857 63.158 0.00 0.00 40.22 5.36
176 177 2.187946 CATCGACCTCACTGGCCC 59.812 66.667 0.00 0.00 40.22 5.80
177 178 3.083997 ATCGACCTCACTGGCCCC 61.084 66.667 0.00 0.00 40.22 5.80
180 181 4.083862 GACCTCACTGGCCCCGAC 62.084 72.222 0.00 0.00 40.22 4.79
183 184 4.394712 CTCACTGGCCCCGACCAC 62.395 72.222 0.00 0.00 35.33 4.16
192 193 4.456253 CCCGACCACGACGACGAG 62.456 72.222 15.32 5.96 42.66 4.18
198 199 2.579787 CACGACGACGAGGATGCC 60.580 66.667 15.32 0.00 42.66 4.40
199 200 2.750637 ACGACGACGAGGATGCCT 60.751 61.111 15.32 0.00 42.66 4.75
200 201 1.450848 ACGACGACGAGGATGCCTA 60.451 57.895 15.32 0.00 42.66 3.93
201 202 1.280142 CGACGACGAGGATGCCTAG 59.720 63.158 0.00 0.00 42.66 3.02
202 203 1.655329 GACGACGAGGATGCCTAGG 59.345 63.158 3.67 3.67 31.76 3.02
203 204 0.818445 GACGACGAGGATGCCTAGGA 60.818 60.000 14.75 0.00 31.76 2.94
204 205 1.102222 ACGACGAGGATGCCTAGGAC 61.102 60.000 14.75 4.44 31.76 3.85
205 206 1.101635 CGACGAGGATGCCTAGGACA 61.102 60.000 14.75 10.80 31.76 4.02
206 207 1.112113 GACGAGGATGCCTAGGACAA 58.888 55.000 14.75 0.00 31.76 3.18
207 208 0.824759 ACGAGGATGCCTAGGACAAC 59.175 55.000 14.75 8.83 31.76 3.32
208 209 0.249073 CGAGGATGCCTAGGACAACG 60.249 60.000 14.75 10.83 31.76 4.10
209 210 0.530870 GAGGATGCCTAGGACAACGC 60.531 60.000 14.75 6.17 31.76 4.84
210 211 1.883084 GGATGCCTAGGACAACGCG 60.883 63.158 14.75 3.53 0.00 6.01
211 212 2.511600 ATGCCTAGGACAACGCGC 60.512 61.111 14.75 0.00 0.00 6.86
212 213 4.752879 TGCCTAGGACAACGCGCC 62.753 66.667 14.75 0.00 0.00 6.53
213 214 4.452733 GCCTAGGACAACGCGCCT 62.453 66.667 14.75 7.21 38.31 5.52
214 215 2.202756 CCTAGGACAACGCGCCTC 60.203 66.667 5.73 0.00 35.73 4.70
215 216 2.202756 CTAGGACAACGCGCCTCC 60.203 66.667 5.73 7.71 35.73 4.30
216 217 2.678934 TAGGACAACGCGCCTCCT 60.679 61.111 20.08 20.08 38.10 3.69
217 218 2.227089 CTAGGACAACGCGCCTCCTT 62.227 60.000 21.07 8.93 35.87 3.36
218 219 2.501223 TAGGACAACGCGCCTCCTTG 62.501 60.000 21.07 13.67 35.87 3.61
219 220 2.665185 GACAACGCGCCTCCTTGT 60.665 61.111 5.73 9.19 0.00 3.16
220 221 1.373748 GACAACGCGCCTCCTTGTA 60.374 57.895 5.73 0.00 0.00 2.41
221 222 1.352156 GACAACGCGCCTCCTTGTAG 61.352 60.000 5.73 0.00 0.00 2.74
222 223 1.374252 CAACGCGCCTCCTTGTAGT 60.374 57.895 5.73 0.00 0.00 2.73
223 224 0.949105 CAACGCGCCTCCTTGTAGTT 60.949 55.000 5.73 0.00 0.00 2.24
224 225 0.669625 AACGCGCCTCCTTGTAGTTC 60.670 55.000 5.73 0.00 0.00 3.01
225 226 1.215647 CGCGCCTCCTTGTAGTTCT 59.784 57.895 0.00 0.00 0.00 3.01
226 227 0.389948 CGCGCCTCCTTGTAGTTCTT 60.390 55.000 0.00 0.00 0.00 2.52
227 228 1.135199 CGCGCCTCCTTGTAGTTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
228 229 2.269172 GCGCCTCCTTGTAGTTCTTAC 58.731 52.381 0.00 0.00 0.00 2.34
229 230 2.094130 GCGCCTCCTTGTAGTTCTTACT 60.094 50.000 0.00 0.00 38.44 2.24
230 231 3.616802 GCGCCTCCTTGTAGTTCTTACTT 60.617 47.826 0.00 0.00 35.78 2.24
231 232 4.566987 CGCCTCCTTGTAGTTCTTACTTT 58.433 43.478 0.00 0.00 35.78 2.66
232 233 4.995487 CGCCTCCTTGTAGTTCTTACTTTT 59.005 41.667 0.00 0.00 35.78 2.27
233 234 6.161381 CGCCTCCTTGTAGTTCTTACTTTTA 58.839 40.000 0.00 0.00 35.78 1.52
234 235 6.817140 CGCCTCCTTGTAGTTCTTACTTTTAT 59.183 38.462 0.00 0.00 35.78 1.40
235 236 7.333672 CGCCTCCTTGTAGTTCTTACTTTTATT 59.666 37.037 0.00 0.00 35.78 1.40
236 237 9.011095 GCCTCCTTGTAGTTCTTACTTTTATTT 57.989 33.333 0.00 0.00 35.78 1.40
279 280 3.533606 AAATGGACTCATGGACTCTCG 57.466 47.619 0.00 0.00 33.18 4.04
280 281 0.749649 ATGGACTCATGGACTCTCGC 59.250 55.000 0.00 0.00 31.34 5.03
281 282 1.323271 TGGACTCATGGACTCTCGCC 61.323 60.000 0.00 0.00 0.00 5.54
282 283 1.064946 GACTCATGGACTCTCGCCG 59.935 63.158 0.00 0.00 0.00 6.46
283 284 2.343163 GACTCATGGACTCTCGCCGG 62.343 65.000 0.00 0.00 0.00 6.13
284 285 2.362503 TCATGGACTCTCGCCGGT 60.363 61.111 1.90 0.00 0.00 5.28
285 286 2.105128 CATGGACTCTCGCCGGTC 59.895 66.667 1.90 0.00 0.00 4.79
286 287 2.043852 ATGGACTCTCGCCGGTCT 60.044 61.111 1.90 0.00 33.46 3.85
287 288 1.682684 ATGGACTCTCGCCGGTCTT 60.683 57.895 1.90 0.00 33.46 3.01
288 289 1.258445 ATGGACTCTCGCCGGTCTTT 61.258 55.000 1.90 0.00 33.46 2.52
289 290 1.446272 GGACTCTCGCCGGTCTTTG 60.446 63.158 1.90 0.00 33.46 2.77
290 291 1.289380 GACTCTCGCCGGTCTTTGT 59.711 57.895 1.90 0.00 0.00 2.83
291 292 1.006102 ACTCTCGCCGGTCTTTGTG 60.006 57.895 1.90 0.00 0.00 3.33
292 293 1.289066 CTCTCGCCGGTCTTTGTGA 59.711 57.895 1.90 0.00 0.00 3.58
293 294 1.006571 TCTCGCCGGTCTTTGTGAC 60.007 57.895 1.90 0.00 44.63 3.67
304 305 3.758300 GTCTTTGTGACCGGCATTAATG 58.242 45.455 11.27 11.27 39.69 1.90
305 306 3.190535 GTCTTTGTGACCGGCATTAATGT 59.809 43.478 16.61 0.00 39.69 2.71
306 307 3.823873 TCTTTGTGACCGGCATTAATGTT 59.176 39.130 16.61 0.00 0.00 2.71
307 308 4.279671 TCTTTGTGACCGGCATTAATGTTT 59.720 37.500 16.61 0.00 0.00 2.83
308 309 5.473846 TCTTTGTGACCGGCATTAATGTTTA 59.526 36.000 16.61 0.00 0.00 2.01
309 310 5.707242 TTGTGACCGGCATTAATGTTTAA 57.293 34.783 16.61 0.10 0.00 1.52
310 311 5.906113 TGTGACCGGCATTAATGTTTAAT 57.094 34.783 16.61 0.00 0.00 1.40
311 312 6.274157 TGTGACCGGCATTAATGTTTAATT 57.726 33.333 16.61 0.00 0.00 1.40
312 313 7.392494 TGTGACCGGCATTAATGTTTAATTA 57.608 32.000 16.61 0.00 0.00 1.40
313 314 7.827701 TGTGACCGGCATTAATGTTTAATTAA 58.172 30.769 16.61 0.00 0.00 1.40
314 315 8.470805 TGTGACCGGCATTAATGTTTAATTAAT 58.529 29.630 16.61 0.00 35.31 1.40
315 316 9.308318 GTGACCGGCATTAATGTTTAATTAATT 57.692 29.630 16.61 5.89 33.37 1.40
316 317 9.877178 TGACCGGCATTAATGTTTAATTAATTT 57.123 25.926 16.61 0.00 33.37 1.82
348 349 9.853177 TTTTTCAAAATGTTTATGGTAATGGGT 57.147 25.926 0.00 0.00 0.00 4.51
349 350 9.853177 TTTTCAAAATGTTTATGGTAATGGGTT 57.147 25.926 0.00 0.00 0.00 4.11
350 351 9.853177 TTTCAAAATGTTTATGGTAATGGGTTT 57.147 25.926 0.00 0.00 0.00 3.27
351 352 9.853177 TTCAAAATGTTTATGGTAATGGGTTTT 57.147 25.926 0.00 0.00 0.00 2.43
352 353 9.853177 TCAAAATGTTTATGGTAATGGGTTTTT 57.147 25.926 0.00 0.00 0.00 1.94
372 373 6.820470 TTTTTGTGCGACCTTAAAAATGAG 57.180 33.333 0.00 0.00 29.87 2.90
373 374 5.508200 TTTGTGCGACCTTAAAAATGAGT 57.492 34.783 0.00 0.00 0.00 3.41
374 375 4.742438 TGTGCGACCTTAAAAATGAGTC 57.258 40.909 0.00 0.00 0.00 3.36
375 376 4.130857 TGTGCGACCTTAAAAATGAGTCA 58.869 39.130 0.00 0.00 0.00 3.41
376 377 4.213270 TGTGCGACCTTAAAAATGAGTCAG 59.787 41.667 0.00 0.00 0.00 3.51
377 378 4.451096 GTGCGACCTTAAAAATGAGTCAGA 59.549 41.667 0.00 0.00 0.00 3.27
378 379 4.451096 TGCGACCTTAAAAATGAGTCAGAC 59.549 41.667 0.00 0.00 0.00 3.51
379 380 4.142881 GCGACCTTAAAAATGAGTCAGACC 60.143 45.833 0.00 0.00 0.00 3.85
380 381 4.994852 CGACCTTAAAAATGAGTCAGACCA 59.005 41.667 0.00 0.00 0.00 4.02
381 382 5.120830 CGACCTTAAAAATGAGTCAGACCAG 59.879 44.000 0.00 0.00 0.00 4.00
382 383 4.762251 ACCTTAAAAATGAGTCAGACCAGC 59.238 41.667 0.00 0.00 0.00 4.85
383 384 4.142816 CCTTAAAAATGAGTCAGACCAGCG 60.143 45.833 0.00 0.00 0.00 5.18
384 385 2.550830 AAAATGAGTCAGACCAGCGT 57.449 45.000 0.00 0.00 0.00 5.07
385 386 2.550830 AAATGAGTCAGACCAGCGTT 57.449 45.000 0.00 0.00 0.00 4.84
386 387 1.800805 AATGAGTCAGACCAGCGTTG 58.199 50.000 0.00 0.00 0.00 4.10
387 388 0.969149 ATGAGTCAGACCAGCGTTGA 59.031 50.000 0.00 0.00 0.00 3.18
388 389 0.315251 TGAGTCAGACCAGCGTTGAG 59.685 55.000 0.00 0.00 0.00 3.02
389 390 0.315568 GAGTCAGACCAGCGTTGAGT 59.684 55.000 0.00 0.00 0.00 3.41
390 391 0.032678 AGTCAGACCAGCGTTGAGTG 59.967 55.000 0.00 0.00 0.00 3.51
391 392 0.249489 GTCAGACCAGCGTTGAGTGT 60.249 55.000 0.00 0.00 0.00 3.55
392 393 1.000607 GTCAGACCAGCGTTGAGTGTA 60.001 52.381 0.00 0.00 0.00 2.90
393 394 1.684450 TCAGACCAGCGTTGAGTGTAA 59.316 47.619 0.00 0.00 0.00 2.41
394 395 2.061773 CAGACCAGCGTTGAGTGTAAG 58.938 52.381 0.00 0.00 0.00 2.34
395 396 0.790814 GACCAGCGTTGAGTGTAAGC 59.209 55.000 0.00 0.00 0.00 3.09
396 397 0.105964 ACCAGCGTTGAGTGTAAGCA 59.894 50.000 0.00 0.00 0.00 3.91
397 398 1.225855 CCAGCGTTGAGTGTAAGCAA 58.774 50.000 0.00 0.00 0.00 3.91
398 399 1.069906 CCAGCGTTGAGTGTAAGCAAC 60.070 52.381 0.00 0.00 40.62 4.17
402 403 2.943843 GTTGAGTGTAAGCAACGACC 57.056 50.000 0.00 0.00 35.58 4.79
403 404 1.529865 GTTGAGTGTAAGCAACGACCC 59.470 52.381 0.00 0.00 35.58 4.46
404 405 0.753867 TGAGTGTAAGCAACGACCCA 59.246 50.000 0.00 0.00 0.00 4.51
405 406 1.139256 TGAGTGTAAGCAACGACCCAA 59.861 47.619 0.00 0.00 0.00 4.12
406 407 2.215196 GAGTGTAAGCAACGACCCAAA 58.785 47.619 0.00 0.00 0.00 3.28
407 408 1.944709 AGTGTAAGCAACGACCCAAAC 59.055 47.619 0.00 0.00 0.00 2.93
408 409 1.671845 GTGTAAGCAACGACCCAAACA 59.328 47.619 0.00 0.00 0.00 2.83
409 410 1.671845 TGTAAGCAACGACCCAAACAC 59.328 47.619 0.00 0.00 0.00 3.32
410 411 1.671845 GTAAGCAACGACCCAAACACA 59.328 47.619 0.00 0.00 0.00 3.72
411 412 1.178276 AAGCAACGACCCAAACACAA 58.822 45.000 0.00 0.00 0.00 3.33
412 413 1.178276 AGCAACGACCCAAACACAAA 58.822 45.000 0.00 0.00 0.00 2.83
413 414 1.546476 AGCAACGACCCAAACACAAAA 59.454 42.857 0.00 0.00 0.00 2.44
414 415 1.923864 GCAACGACCCAAACACAAAAG 59.076 47.619 0.00 0.00 0.00 2.27
415 416 2.672760 GCAACGACCCAAACACAAAAGT 60.673 45.455 0.00 0.00 0.00 2.66
416 417 2.920490 CAACGACCCAAACACAAAAGTG 59.080 45.455 0.00 0.00 0.00 3.16
417 418 2.438411 ACGACCCAAACACAAAAGTGA 58.562 42.857 2.22 0.00 0.00 3.41
418 419 3.020984 ACGACCCAAACACAAAAGTGAT 58.979 40.909 2.22 0.00 0.00 3.06
419 420 3.066203 ACGACCCAAACACAAAAGTGATC 59.934 43.478 2.22 0.00 0.00 2.92
420 421 3.066064 CGACCCAAACACAAAAGTGATCA 59.934 43.478 2.22 0.00 0.00 2.92
421 422 4.261572 CGACCCAAACACAAAAGTGATCAT 60.262 41.667 0.00 0.00 0.00 2.45
422 423 5.049060 CGACCCAAACACAAAAGTGATCATA 60.049 40.000 0.00 0.00 0.00 2.15
423 424 6.349280 CGACCCAAACACAAAAGTGATCATAT 60.349 38.462 0.00 0.00 0.00 1.78
424 425 6.690530 ACCCAAACACAAAAGTGATCATATG 58.309 36.000 0.00 0.00 0.00 1.78
425 426 6.267471 ACCCAAACACAAAAGTGATCATATGT 59.733 34.615 0.00 0.00 0.00 2.29
426 427 6.808212 CCCAAACACAAAAGTGATCATATGTC 59.192 38.462 0.00 0.80 0.00 3.06
427 428 7.309377 CCCAAACACAAAAGTGATCATATGTCT 60.309 37.037 0.00 0.00 0.00 3.41
428 429 7.539710 CCAAACACAAAAGTGATCATATGTCTG 59.460 37.037 0.00 0.00 0.00 3.51
429 430 7.750229 AACACAAAAGTGATCATATGTCTGT 57.250 32.000 0.00 0.00 0.00 3.41
430 431 7.369803 ACACAAAAGTGATCATATGTCTGTC 57.630 36.000 0.00 0.00 0.00 3.51
431 432 6.936335 ACACAAAAGTGATCATATGTCTGTCA 59.064 34.615 0.00 1.29 0.00 3.58
432 433 7.445096 ACACAAAAGTGATCATATGTCTGTCAA 59.555 33.333 0.00 0.00 0.00 3.18
433 434 8.291740 CACAAAAGTGATCATATGTCTGTCAAA 58.708 33.333 0.00 0.00 0.00 2.69
434 435 8.292448 ACAAAAGTGATCATATGTCTGTCAAAC 58.708 33.333 0.00 0.00 0.00 2.93
435 436 8.509690 CAAAAGTGATCATATGTCTGTCAAACT 58.490 33.333 0.00 0.00 0.00 2.66
436 437 7.606858 AAGTGATCATATGTCTGTCAAACTG 57.393 36.000 0.00 0.00 0.00 3.16
437 438 6.939622 AGTGATCATATGTCTGTCAAACTGA 58.060 36.000 0.00 0.00 0.00 3.41
479 480 1.705256 CGAATCTTCGTTGAACCGGA 58.295 50.000 9.46 0.00 45.09 5.14
480 481 1.654105 CGAATCTTCGTTGAACCGGAG 59.346 52.381 9.46 0.00 45.09 4.63
481 482 1.393883 GAATCTTCGTTGAACCGGAGC 59.606 52.381 9.46 0.00 33.33 4.70
482 483 0.736325 ATCTTCGTTGAACCGGAGCG 60.736 55.000 9.46 0.00 33.33 5.03
483 484 3.011760 CTTCGTTGAACCGGAGCGC 62.012 63.158 9.46 0.00 0.00 5.92
484 485 3.509137 TTCGTTGAACCGGAGCGCT 62.509 57.895 11.27 11.27 0.00 5.92
485 486 3.777925 CGTTGAACCGGAGCGCTG 61.778 66.667 18.48 2.15 0.00 5.18
486 487 3.423154 GTTGAACCGGAGCGCTGG 61.423 66.667 18.48 14.58 46.62 4.85
487 488 3.621805 TTGAACCGGAGCGCTGGA 61.622 61.111 23.42 0.00 43.76 3.86
488 489 3.589654 TTGAACCGGAGCGCTGGAG 62.590 63.158 23.42 4.88 43.76 3.86
489 490 4.070552 GAACCGGAGCGCTGGAGT 62.071 66.667 23.42 9.18 43.76 3.85
490 491 3.591254 GAACCGGAGCGCTGGAGTT 62.591 63.158 23.42 15.33 43.76 3.01
491 492 3.883744 AACCGGAGCGCTGGAGTTG 62.884 63.158 23.42 0.00 43.76 3.16
493 494 4.749310 CGGAGCGCTGGAGTTGCT 62.749 66.667 18.48 0.00 42.73 3.91
496 497 3.700109 AGCGCTGGAGTTGCTCTA 58.300 55.556 10.39 0.00 32.44 2.43
497 498 1.515020 AGCGCTGGAGTTGCTCTAG 59.485 57.895 10.39 5.33 41.15 2.43
498 499 1.520342 GCGCTGGAGTTGCTCTAGG 60.520 63.158 0.00 3.63 39.10 3.02
499 500 1.142748 CGCTGGAGTTGCTCTAGGG 59.857 63.158 10.91 10.91 42.97 3.53
500 501 2.596776 GCTGGAGTTGCTCTAGGGA 58.403 57.895 10.68 0.00 39.10 4.20
501 502 0.905357 GCTGGAGTTGCTCTAGGGAA 59.095 55.000 10.68 0.00 39.10 3.97
502 503 1.134551 GCTGGAGTTGCTCTAGGGAAG 60.135 57.143 10.68 0.00 39.10 3.46
503 504 0.905357 TGGAGTTGCTCTAGGGAAGC 59.095 55.000 0.00 0.00 0.00 3.86
504 505 0.905357 GGAGTTGCTCTAGGGAAGCA 59.095 55.000 0.00 0.00 36.72 3.91
505 506 1.279271 GGAGTTGCTCTAGGGAAGCAA 59.721 52.381 12.07 12.07 44.88 3.91
510 511 2.632377 TGCTCTAGGGAAGCAATTTCG 58.368 47.619 2.27 0.00 36.62 3.46
511 512 2.027192 TGCTCTAGGGAAGCAATTTCGT 60.027 45.455 2.27 0.00 36.62 3.85
512 513 3.010420 GCTCTAGGGAAGCAATTTCGTT 58.990 45.455 0.00 0.00 36.62 3.85
513 514 3.440522 GCTCTAGGGAAGCAATTTCGTTT 59.559 43.478 0.00 0.00 36.62 3.60
514 515 4.082733 GCTCTAGGGAAGCAATTTCGTTTT 60.083 41.667 0.00 0.00 36.62 2.43
515 516 5.123344 GCTCTAGGGAAGCAATTTCGTTTTA 59.877 40.000 0.00 0.00 36.62 1.52
516 517 6.490566 TCTAGGGAAGCAATTTCGTTTTAC 57.509 37.500 0.00 0.00 36.62 2.01
517 518 5.998981 TCTAGGGAAGCAATTTCGTTTTACA 59.001 36.000 0.00 0.00 36.62 2.41
518 519 5.523438 AGGGAAGCAATTTCGTTTTACAA 57.477 34.783 0.00 0.00 36.62 2.41
519 520 5.908341 AGGGAAGCAATTTCGTTTTACAAA 58.092 33.333 0.00 0.00 36.62 2.83
520 521 6.342111 AGGGAAGCAATTTCGTTTTACAAAA 58.658 32.000 0.00 0.00 36.62 2.44
521 522 6.819146 AGGGAAGCAATTTCGTTTTACAAAAA 59.181 30.769 0.00 0.00 36.62 1.94
522 523 7.497579 AGGGAAGCAATTTCGTTTTACAAAAAT 59.502 29.630 0.00 0.00 36.62 1.82
523 524 7.585936 GGGAAGCAATTTCGTTTTACAAAAATG 59.414 33.333 0.00 0.00 36.62 2.32
524 525 8.331742 GGAAGCAATTTCGTTTTACAAAAATGA 58.668 29.630 3.51 3.51 36.62 2.57
525 526 9.862585 GAAGCAATTTCGTTTTACAAAAATGAT 57.137 25.926 7.62 0.00 0.00 2.45
526 527 9.649024 AAGCAATTTCGTTTTACAAAAATGATG 57.351 25.926 7.62 5.42 0.00 3.07
527 528 8.825745 AGCAATTTCGTTTTACAAAAATGATGT 58.174 25.926 7.62 0.00 34.81 3.06
528 529 9.091255 GCAATTTCGTTTTACAAAAATGATGTC 57.909 29.630 7.62 0.00 32.27 3.06
529 530 9.579610 CAATTTCGTTTTACAAAAATGATGTCC 57.420 29.630 7.62 0.00 32.27 4.02
530 531 7.701809 TTTCGTTTTACAAAAATGATGTCCC 57.298 32.000 7.62 0.00 32.27 4.46
531 532 5.453648 TCGTTTTACAAAAATGATGTCCCG 58.546 37.500 3.51 0.00 32.27 5.14
532 533 4.619336 CGTTTTACAAAAATGATGTCCCGG 59.381 41.667 0.00 0.00 32.27 5.73
533 534 4.792521 TTTACAAAAATGATGTCCCGGG 57.207 40.909 16.85 16.85 32.27 5.73
607 608 4.535094 GCGATTCAATGCGCCGCA 62.535 61.111 16.69 16.69 46.93 5.69
626 627 2.300787 GCACGCGATAAGCCTACGG 61.301 63.158 15.93 0.00 44.76 4.02
628 629 1.825191 ACGCGATAAGCCTACGGGA 60.825 57.895 15.93 0.00 44.76 5.14
656 657 1.722636 ATCTAGGCCGTCCGTTCGTC 61.723 60.000 0.00 0.00 37.47 4.20
663 664 0.389426 CCGTCCGTTCGTCTCCATTT 60.389 55.000 0.00 0.00 0.00 2.32
755 757 2.983791 GCATGTGGGCCAGCAAAT 59.016 55.556 6.40 0.00 0.00 2.32
1018 1045 2.034048 GATGGAGGAGAAGCGGGACC 62.034 65.000 0.00 0.00 0.00 4.46
1296 1323 3.195698 GAATCGAAGGCCGCGCTT 61.196 61.111 15.04 12.14 38.37 4.68
1322 1349 3.499737 CGCCAAGGACGATGCCAC 61.500 66.667 0.00 0.00 0.00 5.01
1353 1380 4.388499 GCGGTCGCTGGGGAGAAA 62.388 66.667 8.20 0.00 38.26 2.52
1467 1494 0.618458 AGGGCAACAATTCCGAGCTA 59.382 50.000 0.00 0.00 39.74 3.32
1502 1529 3.438360 GCGAACTCATAAAGCAATTGGG 58.562 45.455 7.72 0.00 0.00 4.12
1622 1649 1.760405 ATGGAGGGGAAGTTGAAGGT 58.240 50.000 0.00 0.00 0.00 3.50
1662 1689 1.821332 GCTGGGATCCAAGAAGGCG 60.821 63.158 21.32 0.00 37.29 5.52
1933 1960 5.156608 TGATGCTGAGAAGACTGAAATCA 57.843 39.130 0.00 0.00 0.00 2.57
1992 2019 2.435586 CAGGCTGACAAGGAGGCG 60.436 66.667 9.42 0.00 40.84 5.52
1996 2023 4.020617 CTGACAAGGAGGCGGCCA 62.021 66.667 23.09 0.00 0.00 5.36
2035 2062 2.180276 AGGATGCTCAGACCGTTAAGT 58.820 47.619 0.00 0.00 0.00 2.24
2229 2256 5.127682 GGAGAACTGCAATGGTAAAATGGAT 59.872 40.000 0.00 0.00 0.00 3.41
2230 2257 5.969423 AGAACTGCAATGGTAAAATGGATG 58.031 37.500 0.00 0.00 0.00 3.51
2232 2259 3.118665 ACTGCAATGGTAAAATGGATGGC 60.119 43.478 0.00 0.00 0.00 4.40
2360 2387 1.633945 GAACAAGGGTGGTATCTGGGT 59.366 52.381 0.00 0.00 0.00 4.51
2554 2581 3.006859 TGATGAATCGGCTGGTACTATGG 59.993 47.826 0.00 0.00 0.00 2.74
2566 2593 6.491403 GGCTGGTACTATGGAATGAAATCAAT 59.509 38.462 0.00 0.00 0.00 2.57
2643 2670 6.183324 GTGTTTCGTCTTTGAAGTTCTGTAC 58.817 40.000 4.17 0.00 0.00 2.90
2659 2686 2.882761 CTGTACCATGATGATTGCTGGG 59.117 50.000 0.00 0.00 32.89 4.45
2685 2712 1.341285 TGCTGTCAGGGCAAGCATTAT 60.341 47.619 1.14 0.00 36.71 1.28
2719 2746 4.808895 GGATTTCCTGTTGGTGTTGTTTTC 59.191 41.667 0.00 0.00 34.23 2.29
2735 2762 3.755905 TGTTTTCTCATATCGGCTTGCAA 59.244 39.130 0.00 0.00 0.00 4.08
2736 2763 4.217334 TGTTTTCTCATATCGGCTTGCAAA 59.783 37.500 0.00 0.00 0.00 3.68
2763 2790 4.040755 ACCTTGAGCTGGTAGGATGTTAT 58.959 43.478 11.31 0.00 35.80 1.89
2912 2962 1.396996 GCAAATATTCGTGCGTCCTGT 59.603 47.619 0.00 0.00 0.00 4.00
2913 2963 2.536928 GCAAATATTCGTGCGTCCTGTC 60.537 50.000 0.00 0.00 0.00 3.51
2914 2964 2.930040 CAAATATTCGTGCGTCCTGTCT 59.070 45.455 0.00 0.00 0.00 3.41
2929 2980 3.053619 TCCTGTCTGATAGCACTAGGACA 60.054 47.826 1.51 1.51 33.56 4.02
2935 2986 2.766263 TGATAGCACTAGGACACAAGGG 59.234 50.000 0.00 0.00 0.00 3.95
2958 3009 3.565307 TGCTTTCCAGTTTCCACAGAAT 58.435 40.909 0.00 0.00 0.00 2.40
2970 3021 9.342308 CAGTTTCCACAGAATATATGGTTGTAT 57.658 33.333 0.00 0.00 34.89 2.29
2978 3029 7.147391 ACAGAATATATGGTTGTATGGTGGTGA 60.147 37.037 0.00 0.00 0.00 4.02
2987 3038 7.754624 TGGTTGTATGGTGGTGATGATATATT 58.245 34.615 0.00 0.00 0.00 1.28
2988 3039 7.665145 TGGTTGTATGGTGGTGATGATATATTG 59.335 37.037 0.00 0.00 0.00 1.90
3033 3084 2.433239 ACTACTGGTTTCGTTGTCCTGT 59.567 45.455 0.00 0.00 37.26 4.00
3066 3119 4.640201 TGTATGTAGAGAAATGCAAAGGGC 59.360 41.667 0.00 0.00 45.13 5.19
3068 3121 2.041620 TGTAGAGAAATGCAAAGGGCCT 59.958 45.455 0.00 0.00 43.89 5.19
3101 3154 4.988540 CACGTGAAAACACTATGAAGAGGA 59.011 41.667 10.90 0.00 0.00 3.71
3119 3172 2.084546 GGACCAAAAGGGATCTCAACG 58.915 52.381 0.00 0.00 41.15 4.10
3329 3487 6.295719 AGAAAACAGGGTCGTAATAGACAT 57.704 37.500 0.00 0.00 42.62 3.06
3385 3543 3.007635 CGCTTTGTCTTAAGGGTTAGGG 58.992 50.000 1.85 1.21 34.44 3.53
3388 3546 4.831155 GCTTTGTCTTAAGGGTTAGGGTTT 59.169 41.667 1.85 0.00 0.00 3.27
3389 3547 5.303589 GCTTTGTCTTAAGGGTTAGGGTTTT 59.696 40.000 1.85 0.00 0.00 2.43
3390 3548 6.516194 GCTTTGTCTTAAGGGTTAGGGTTTTC 60.516 42.308 1.85 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.435515 CTCCAGCTGCTCGAGGTAC 59.564 63.158 15.42 0.00 0.00 3.34
13 14 2.418910 GCTCCAGCTGCTCGAGGTA 61.419 63.158 22.73 2.48 38.21 3.08
14 15 3.768922 GCTCCAGCTGCTCGAGGT 61.769 66.667 22.73 0.00 38.21 3.85
15 16 4.869440 CGCTCCAGCTGCTCGAGG 62.869 72.222 22.73 11.69 39.32 4.63
33 34 3.441290 AGGTCCTCCTTCGCGTCG 61.441 66.667 5.77 0.00 42.12 5.12
42 43 0.175989 CGTAGGCAAGAAGGTCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
43 44 0.175989 CCGTAGGCAAGAAGGTCCTC 59.824 60.000 0.00 0.00 46.14 3.71
44 45 2.287829 CCGTAGGCAAGAAGGTCCT 58.712 57.895 0.00 0.00 46.14 3.85
45 46 4.934989 CCGTAGGCAAGAAGGTCC 57.065 61.111 0.00 0.00 46.14 4.46
57 58 2.017559 GCTAGGCTGGTCCACCGTAG 62.018 65.000 8.88 8.88 39.43 3.51
58 59 2.056223 GCTAGGCTGGTCCACCGTA 61.056 63.158 0.00 0.00 39.43 4.02
59 60 3.391382 GCTAGGCTGGTCCACCGT 61.391 66.667 0.00 0.00 39.43 4.83
60 61 4.162690 GGCTAGGCTGGTCCACCG 62.163 72.222 9.46 0.00 39.43 4.94
61 62 2.602676 TTGGCTAGGCTGGTCCACC 61.603 63.158 18.18 0.08 37.29 4.61
62 63 1.377333 GTTGGCTAGGCTGGTCCAC 60.377 63.158 18.18 2.39 37.29 4.02
63 64 2.954684 CGTTGGCTAGGCTGGTCCA 61.955 63.158 18.18 9.33 37.29 4.02
64 65 2.125106 CGTTGGCTAGGCTGGTCC 60.125 66.667 18.18 2.16 0.00 4.46
65 66 1.448013 GTCGTTGGCTAGGCTGGTC 60.448 63.158 18.18 0.00 0.00 4.02
66 67 2.663196 GTCGTTGGCTAGGCTGGT 59.337 61.111 18.18 0.00 0.00 4.00
67 68 2.125106 GGTCGTTGGCTAGGCTGG 60.125 66.667 18.18 6.66 0.00 4.85
68 69 0.464036 TATGGTCGTTGGCTAGGCTG 59.536 55.000 18.18 7.58 0.00 4.85
69 70 0.464452 GTATGGTCGTTGGCTAGGCT 59.536 55.000 18.18 0.00 0.00 4.58
70 71 0.177141 TGTATGGTCGTTGGCTAGGC 59.823 55.000 9.85 9.85 0.00 3.93
71 72 1.806623 GCTGTATGGTCGTTGGCTAGG 60.807 57.143 0.00 0.00 0.00 3.02
72 73 1.571919 GCTGTATGGTCGTTGGCTAG 58.428 55.000 0.00 0.00 0.00 3.42
73 74 0.177141 GGCTGTATGGTCGTTGGCTA 59.823 55.000 0.00 0.00 0.00 3.93
74 75 1.078426 GGCTGTATGGTCGTTGGCT 60.078 57.895 0.00 0.00 0.00 4.75
75 76 2.112815 GGGCTGTATGGTCGTTGGC 61.113 63.158 0.00 0.00 0.00 4.52
76 77 1.813753 CGGGCTGTATGGTCGTTGG 60.814 63.158 0.00 0.00 0.00 3.77
77 78 2.461110 GCGGGCTGTATGGTCGTTG 61.461 63.158 0.00 0.00 0.00 4.10
78 79 2.125269 GCGGGCTGTATGGTCGTT 60.125 61.111 0.00 0.00 0.00 3.85
79 80 4.508128 CGCGGGCTGTATGGTCGT 62.508 66.667 0.00 0.00 0.00 4.34
98 99 1.369448 GCTCTAGCGACATCGTCCG 60.369 63.158 2.85 0.00 42.22 4.79
99 100 1.008309 GGCTCTAGCGACATCGTCC 60.008 63.158 2.85 0.00 43.26 4.79
100 101 0.317436 CAGGCTCTAGCGACATCGTC 60.317 60.000 2.85 0.00 43.26 4.20
101 102 1.729470 CCAGGCTCTAGCGACATCGT 61.729 60.000 2.85 0.00 43.26 3.73
102 103 1.007964 CCAGGCTCTAGCGACATCG 60.008 63.158 0.00 0.00 43.26 3.84
103 104 0.031449 GACCAGGCTCTAGCGACATC 59.969 60.000 0.00 0.00 43.26 3.06
104 105 1.729470 CGACCAGGCTCTAGCGACAT 61.729 60.000 0.00 0.00 43.26 3.06
105 106 2.407428 CGACCAGGCTCTAGCGACA 61.407 63.158 0.00 0.00 43.26 4.35
106 107 2.113433 TCGACCAGGCTCTAGCGAC 61.113 63.158 0.00 0.00 43.26 5.19
107 108 2.113433 GTCGACCAGGCTCTAGCGA 61.113 63.158 3.51 0.00 43.26 4.93
108 109 2.409651 GTCGACCAGGCTCTAGCG 59.590 66.667 3.51 0.00 43.26 4.26
109 110 2.409651 CGTCGACCAGGCTCTAGC 59.590 66.667 10.58 0.00 41.14 3.42
110 111 3.111939 CCGTCGACCAGGCTCTAG 58.888 66.667 10.58 0.00 0.00 2.43
116 117 3.966026 GAGAACGCCGTCGACCAGG 62.966 68.421 10.58 7.59 39.41 4.45
117 118 2.473664 AAGAGAACGCCGTCGACCAG 62.474 60.000 10.58 2.62 39.41 4.00
118 119 2.558286 AAGAGAACGCCGTCGACCA 61.558 57.895 10.58 0.00 39.41 4.02
119 120 2.087009 CAAGAGAACGCCGTCGACC 61.087 63.158 10.58 0.00 39.41 4.79
120 121 2.087009 CCAAGAGAACGCCGTCGAC 61.087 63.158 5.18 5.18 39.41 4.20
121 122 2.257371 CCAAGAGAACGCCGTCGA 59.743 61.111 0.00 0.00 39.41 4.20
122 123 2.087009 GTCCAAGAGAACGCCGTCG 61.087 63.158 0.00 0.00 42.43 5.12
123 124 1.009389 CAGTCCAAGAGAACGCCGTC 61.009 60.000 0.00 0.00 0.00 4.79
124 125 1.006102 CAGTCCAAGAGAACGCCGT 60.006 57.895 0.00 0.00 0.00 5.68
125 126 1.738099 CCAGTCCAAGAGAACGCCG 60.738 63.158 0.00 0.00 0.00 6.46
126 127 2.035442 GCCAGTCCAAGAGAACGCC 61.035 63.158 0.00 0.00 0.00 5.68
127 128 2.035442 GGCCAGTCCAAGAGAACGC 61.035 63.158 0.00 0.00 34.01 4.84
128 129 1.376037 GGGCCAGTCCAAGAGAACG 60.376 63.158 4.39 0.00 36.21 3.95
129 130 1.376037 CGGGCCAGTCCAAGAGAAC 60.376 63.158 4.39 0.00 36.21 3.01
130 131 2.592993 CCGGGCCAGTCCAAGAGAA 61.593 63.158 4.39 0.00 36.21 2.87
131 132 3.003173 CCGGGCCAGTCCAAGAGA 61.003 66.667 4.39 0.00 36.21 3.10
132 133 4.785453 GCCGGGCCAGTCCAAGAG 62.785 72.222 8.12 0.00 36.21 2.85
152 153 1.583967 GTGAGGTCGATGAGCGTCG 60.584 63.158 5.78 5.78 42.74 5.12
153 154 0.524392 CAGTGAGGTCGATGAGCGTC 60.524 60.000 0.00 0.00 41.80 5.19
154 155 1.508545 CAGTGAGGTCGATGAGCGT 59.491 57.895 0.00 0.00 41.80 5.07
155 156 1.226802 CCAGTGAGGTCGATGAGCG 60.227 63.158 0.00 0.00 42.69 5.03
156 157 1.520342 GCCAGTGAGGTCGATGAGC 60.520 63.158 0.00 0.00 40.61 4.26
157 158 1.142748 GGCCAGTGAGGTCGATGAG 59.857 63.158 0.00 0.00 40.61 2.90
158 159 2.359169 GGGCCAGTGAGGTCGATGA 61.359 63.158 4.39 0.00 45.54 2.92
159 160 2.187946 GGGCCAGTGAGGTCGATG 59.812 66.667 4.39 0.00 45.54 3.84
160 161 3.083997 GGGGCCAGTGAGGTCGAT 61.084 66.667 4.39 0.00 45.54 3.59
163 164 4.083862 GTCGGGGCCAGTGAGGTC 62.084 72.222 4.39 0.00 43.09 3.85
166 167 4.394712 GTGGTCGGGGCCAGTGAG 62.395 72.222 4.39 0.00 39.53 3.51
175 176 4.456253 CTCGTCGTCGTGGTCGGG 62.456 72.222 1.33 0.00 38.33 5.14
176 177 4.456253 CCTCGTCGTCGTGGTCGG 62.456 72.222 13.75 0.30 43.14 4.79
177 178 2.747822 ATCCTCGTCGTCGTGGTCG 61.748 63.158 19.58 0.00 46.59 4.79
178 179 1.226323 CATCCTCGTCGTCGTGGTC 60.226 63.158 19.58 0.00 46.59 4.02
179 180 2.875485 CATCCTCGTCGTCGTGGT 59.125 61.111 19.58 7.49 46.59 4.16
181 182 1.712018 TAGGCATCCTCGTCGTCGTG 61.712 60.000 1.33 0.00 38.33 4.35
182 183 1.437772 CTAGGCATCCTCGTCGTCGT 61.438 60.000 1.33 0.00 38.33 4.34
183 184 1.280142 CTAGGCATCCTCGTCGTCG 59.720 63.158 0.00 0.00 34.61 5.12
184 185 0.818445 TCCTAGGCATCCTCGTCGTC 60.818 60.000 2.96 0.00 34.61 4.20
185 186 1.102222 GTCCTAGGCATCCTCGTCGT 61.102 60.000 2.96 0.00 34.61 4.34
186 187 1.101635 TGTCCTAGGCATCCTCGTCG 61.102 60.000 2.96 0.00 34.61 5.12
187 188 1.112113 TTGTCCTAGGCATCCTCGTC 58.888 55.000 2.96 0.00 34.61 4.20
188 189 0.824759 GTTGTCCTAGGCATCCTCGT 59.175 55.000 2.96 0.00 34.61 4.18
189 190 0.249073 CGTTGTCCTAGGCATCCTCG 60.249 60.000 2.96 0.39 34.61 4.63
190 191 0.530870 GCGTTGTCCTAGGCATCCTC 60.531 60.000 2.96 0.00 34.61 3.71
191 192 1.522569 GCGTTGTCCTAGGCATCCT 59.477 57.895 2.96 0.00 37.71 3.24
192 193 1.883084 CGCGTTGTCCTAGGCATCC 60.883 63.158 2.96 0.00 0.00 3.51
193 194 2.526120 GCGCGTTGTCCTAGGCATC 61.526 63.158 8.43 4.24 0.00 3.91
194 195 2.511600 GCGCGTTGTCCTAGGCAT 60.512 61.111 8.43 0.00 0.00 4.40
195 196 4.752879 GGCGCGTTGTCCTAGGCA 62.753 66.667 8.43 2.51 0.00 4.75
196 197 4.452733 AGGCGCGTTGTCCTAGGC 62.453 66.667 8.43 0.00 0.00 3.93
197 198 2.202756 GAGGCGCGTTGTCCTAGG 60.203 66.667 8.43 0.82 31.71 3.02
198 199 2.202756 GGAGGCGCGTTGTCCTAG 60.203 66.667 8.43 0.00 31.71 3.02
199 200 2.280552 AAGGAGGCGCGTTGTCCTA 61.281 57.895 21.40 0.00 39.97 2.94
200 201 3.626924 AAGGAGGCGCGTTGTCCT 61.627 61.111 17.16 17.16 42.87 3.85
201 202 3.423154 CAAGGAGGCGCGTTGTCC 61.423 66.667 14.29 11.70 37.54 4.02
204 205 0.949105 AACTACAAGGAGGCGCGTTG 60.949 55.000 19.62 19.62 45.40 4.10
205 206 0.669625 GAACTACAAGGAGGCGCGTT 60.670 55.000 8.43 0.00 0.00 4.84
206 207 1.080025 GAACTACAAGGAGGCGCGT 60.080 57.895 8.43 0.27 0.00 6.01
207 208 0.389948 AAGAACTACAAGGAGGCGCG 60.390 55.000 0.00 0.00 0.00 6.86
208 209 2.094130 AGTAAGAACTACAAGGAGGCGC 60.094 50.000 0.00 0.00 32.84 6.53
209 210 3.870633 AGTAAGAACTACAAGGAGGCG 57.129 47.619 0.00 0.00 32.84 5.52
210 211 8.563123 AATAAAAGTAAGAACTACAAGGAGGC 57.437 34.615 0.00 0.00 33.75 4.70
257 258 4.256920 CGAGAGTCCATGAGTCCATTTTT 58.743 43.478 0.00 0.00 32.86 1.94
258 259 3.866651 CGAGAGTCCATGAGTCCATTTT 58.133 45.455 0.00 0.00 32.86 1.82
259 260 2.419297 GCGAGAGTCCATGAGTCCATTT 60.419 50.000 0.00 0.00 32.86 2.32
260 261 1.137872 GCGAGAGTCCATGAGTCCATT 59.862 52.381 0.00 0.00 32.86 3.16
261 262 0.749649 GCGAGAGTCCATGAGTCCAT 59.250 55.000 0.00 0.00 32.86 3.41
262 263 1.323271 GGCGAGAGTCCATGAGTCCA 61.323 60.000 0.00 0.00 32.86 4.02
263 264 1.439644 GGCGAGAGTCCATGAGTCC 59.560 63.158 0.00 0.00 32.86 3.85
264 265 1.064946 CGGCGAGAGTCCATGAGTC 59.935 63.158 0.00 0.00 32.62 3.36
265 266 2.418910 CCGGCGAGAGTCCATGAGT 61.419 63.158 9.30 0.00 0.00 3.41
266 267 2.343163 GACCGGCGAGAGTCCATGAG 62.343 65.000 9.30 0.00 0.00 2.90
267 268 2.362503 ACCGGCGAGAGTCCATGA 60.363 61.111 9.30 0.00 0.00 3.07
268 269 1.949847 AAGACCGGCGAGAGTCCATG 61.950 60.000 9.30 0.00 33.29 3.66
269 270 1.258445 AAAGACCGGCGAGAGTCCAT 61.258 55.000 9.30 0.00 33.29 3.41
270 271 1.906824 AAAGACCGGCGAGAGTCCA 60.907 57.895 9.30 0.00 33.29 4.02
271 272 1.446272 CAAAGACCGGCGAGAGTCC 60.446 63.158 9.30 0.00 33.29 3.85
272 273 1.009389 CACAAAGACCGGCGAGAGTC 61.009 60.000 9.30 7.67 0.00 3.36
273 274 1.006102 CACAAAGACCGGCGAGAGT 60.006 57.895 9.30 0.00 0.00 3.24
274 275 1.009389 GTCACAAAGACCGGCGAGAG 61.009 60.000 9.30 0.00 41.56 3.20
275 276 1.006571 GTCACAAAGACCGGCGAGA 60.007 57.895 9.30 0.00 41.56 4.04
276 277 3.550656 GTCACAAAGACCGGCGAG 58.449 61.111 9.30 0.06 41.56 5.03
283 284 3.190535 ACATTAATGCCGGTCACAAAGAC 59.809 43.478 15.48 0.00 46.83 3.01
284 285 3.417101 ACATTAATGCCGGTCACAAAGA 58.583 40.909 15.48 0.00 0.00 2.52
285 286 3.848272 ACATTAATGCCGGTCACAAAG 57.152 42.857 15.48 0.28 0.00 2.77
286 287 4.592485 AAACATTAATGCCGGTCACAAA 57.408 36.364 15.48 0.49 0.00 2.83
287 288 5.707242 TTAAACATTAATGCCGGTCACAA 57.293 34.783 15.48 0.48 0.00 3.33
288 289 5.906113 ATTAAACATTAATGCCGGTCACA 57.094 34.783 15.48 0.00 0.00 3.58
289 290 8.865590 ATTAATTAAACATTAATGCCGGTCAC 57.134 30.769 15.48 0.00 34.13 3.67
290 291 9.877178 AAATTAATTAAACATTAATGCCGGTCA 57.123 25.926 15.48 1.38 35.21 4.02
322 323 9.853177 ACCCATTACCATAAACATTTTGAAAAA 57.147 25.926 0.00 0.00 0.00 1.94
323 324 9.853177 AACCCATTACCATAAACATTTTGAAAA 57.147 25.926 0.00 0.00 0.00 2.29
324 325 9.853177 AAACCCATTACCATAAACATTTTGAAA 57.147 25.926 0.00 0.00 0.00 2.69
325 326 9.853177 AAAACCCATTACCATAAACATTTTGAA 57.147 25.926 0.00 0.00 0.00 2.69
326 327 9.853177 AAAAACCCATTACCATAAACATTTTGA 57.147 25.926 0.00 0.00 0.00 2.69
349 350 6.334202 ACTCATTTTTAAGGTCGCACAAAAA 58.666 32.000 0.00 0.00 35.15 1.94
350 351 5.897050 ACTCATTTTTAAGGTCGCACAAAA 58.103 33.333 0.00 0.00 0.00 2.44
351 352 5.066634 TGACTCATTTTTAAGGTCGCACAAA 59.933 36.000 0.00 0.00 0.00 2.83
352 353 4.576873 TGACTCATTTTTAAGGTCGCACAA 59.423 37.500 0.00 0.00 0.00 3.33
353 354 4.130857 TGACTCATTTTTAAGGTCGCACA 58.869 39.130 0.00 0.00 0.00 4.57
354 355 4.451096 TCTGACTCATTTTTAAGGTCGCAC 59.549 41.667 0.00 0.00 0.00 5.34
355 356 4.451096 GTCTGACTCATTTTTAAGGTCGCA 59.549 41.667 0.00 0.00 0.00 5.10
356 357 4.142881 GGTCTGACTCATTTTTAAGGTCGC 60.143 45.833 7.85 0.00 0.00 5.19
357 358 4.994852 TGGTCTGACTCATTTTTAAGGTCG 59.005 41.667 7.85 0.00 0.00 4.79
358 359 5.106515 GCTGGTCTGACTCATTTTTAAGGTC 60.107 44.000 7.85 0.00 0.00 3.85
359 360 4.762251 GCTGGTCTGACTCATTTTTAAGGT 59.238 41.667 7.85 0.00 0.00 3.50
360 361 4.142816 CGCTGGTCTGACTCATTTTTAAGG 60.143 45.833 7.85 0.00 0.00 2.69
361 362 4.452455 ACGCTGGTCTGACTCATTTTTAAG 59.548 41.667 7.85 0.00 0.00 1.85
362 363 4.385825 ACGCTGGTCTGACTCATTTTTAA 58.614 39.130 7.85 0.00 0.00 1.52
363 364 4.002906 ACGCTGGTCTGACTCATTTTTA 57.997 40.909 7.85 0.00 0.00 1.52
364 365 2.851195 ACGCTGGTCTGACTCATTTTT 58.149 42.857 7.85 0.00 0.00 1.94
365 366 2.549754 CAACGCTGGTCTGACTCATTTT 59.450 45.455 7.85 0.00 0.00 1.82
366 367 2.146342 CAACGCTGGTCTGACTCATTT 58.854 47.619 7.85 0.00 0.00 2.32
367 368 1.344438 TCAACGCTGGTCTGACTCATT 59.656 47.619 7.85 0.00 0.00 2.57
368 369 0.969149 TCAACGCTGGTCTGACTCAT 59.031 50.000 7.85 0.00 0.00 2.90
369 370 0.315251 CTCAACGCTGGTCTGACTCA 59.685 55.000 7.85 3.52 0.00 3.41
370 371 0.315568 ACTCAACGCTGGTCTGACTC 59.684 55.000 7.85 0.00 0.00 3.36
371 372 0.032678 CACTCAACGCTGGTCTGACT 59.967 55.000 7.85 0.00 0.00 3.41
372 373 0.249489 ACACTCAACGCTGGTCTGAC 60.249 55.000 0.00 0.00 0.00 3.51
373 374 1.324383 TACACTCAACGCTGGTCTGA 58.676 50.000 0.00 0.00 0.00 3.27
374 375 2.061773 CTTACACTCAACGCTGGTCTG 58.938 52.381 0.00 0.00 0.00 3.51
375 376 1.605712 GCTTACACTCAACGCTGGTCT 60.606 52.381 0.00 0.00 0.00 3.85
376 377 0.790814 GCTTACACTCAACGCTGGTC 59.209 55.000 0.00 0.00 0.00 4.02
377 378 0.105964 TGCTTACACTCAACGCTGGT 59.894 50.000 0.00 0.00 0.00 4.00
378 379 1.069906 GTTGCTTACACTCAACGCTGG 60.070 52.381 0.00 0.00 34.12 4.85
379 380 2.300623 GTTGCTTACACTCAACGCTG 57.699 50.000 0.00 0.00 34.12 5.18
383 384 1.529865 GGGTCGTTGCTTACACTCAAC 59.470 52.381 0.00 0.00 39.20 3.18
384 385 1.139256 TGGGTCGTTGCTTACACTCAA 59.861 47.619 0.00 0.00 0.00 3.02
385 386 0.753867 TGGGTCGTTGCTTACACTCA 59.246 50.000 0.00 0.00 0.00 3.41
386 387 1.873698 TTGGGTCGTTGCTTACACTC 58.126 50.000 0.00 0.00 0.00 3.51
387 388 1.944709 GTTTGGGTCGTTGCTTACACT 59.055 47.619 0.00 0.00 0.00 3.55
388 389 1.671845 TGTTTGGGTCGTTGCTTACAC 59.328 47.619 0.00 0.00 0.00 2.90
389 390 1.671845 GTGTTTGGGTCGTTGCTTACA 59.328 47.619 0.00 0.00 0.00 2.41
390 391 1.671845 TGTGTTTGGGTCGTTGCTTAC 59.328 47.619 0.00 0.00 0.00 2.34
391 392 2.039818 TGTGTTTGGGTCGTTGCTTA 57.960 45.000 0.00 0.00 0.00 3.09
392 393 1.178276 TTGTGTTTGGGTCGTTGCTT 58.822 45.000 0.00 0.00 0.00 3.91
393 394 1.178276 TTTGTGTTTGGGTCGTTGCT 58.822 45.000 0.00 0.00 0.00 3.91
394 395 1.923864 CTTTTGTGTTTGGGTCGTTGC 59.076 47.619 0.00 0.00 0.00 4.17
395 396 2.920490 CACTTTTGTGTTTGGGTCGTTG 59.080 45.455 0.00 0.00 44.94 4.10
396 397 3.224884 CACTTTTGTGTTTGGGTCGTT 57.775 42.857 0.00 0.00 44.94 3.85
397 398 2.931512 CACTTTTGTGTTTGGGTCGT 57.068 45.000 0.00 0.00 44.94 4.34
408 409 7.984422 TTGACAGACATATGATCACTTTTGT 57.016 32.000 10.38 0.00 0.00 2.83
409 410 8.509690 AGTTTGACAGACATATGATCACTTTTG 58.490 33.333 10.38 0.00 0.00 2.44
410 411 8.509690 CAGTTTGACAGACATATGATCACTTTT 58.490 33.333 10.38 0.00 0.00 2.27
411 412 7.879677 TCAGTTTGACAGACATATGATCACTTT 59.120 33.333 10.38 0.00 0.00 2.66
412 413 7.332926 GTCAGTTTGACAGACATATGATCACTT 59.667 37.037 10.38 0.00 46.22 3.16
413 414 6.815641 GTCAGTTTGACAGACATATGATCACT 59.184 38.462 10.38 0.54 46.22 3.41
414 415 6.998338 GTCAGTTTGACAGACATATGATCAC 58.002 40.000 10.38 0.00 46.22 3.06
461 462 1.393883 GCTCCGGTTCAACGAAGATTC 59.606 52.381 0.00 0.00 35.47 2.52
462 463 1.439679 GCTCCGGTTCAACGAAGATT 58.560 50.000 0.00 0.00 35.47 2.40
463 464 0.736325 CGCTCCGGTTCAACGAAGAT 60.736 55.000 0.00 0.00 35.47 2.40
464 465 1.372499 CGCTCCGGTTCAACGAAGA 60.372 57.895 0.00 0.00 35.47 2.87
465 466 3.011760 GCGCTCCGGTTCAACGAAG 62.012 63.158 0.00 0.00 35.47 3.79
466 467 3.039588 GCGCTCCGGTTCAACGAA 61.040 61.111 0.00 0.00 35.47 3.85
467 468 3.986006 AGCGCTCCGGTTCAACGA 61.986 61.111 2.64 0.00 32.22 3.85
468 469 3.777925 CAGCGCTCCGGTTCAACG 61.778 66.667 7.13 0.32 34.62 4.10
469 470 3.423154 CCAGCGCTCCGGTTCAAC 61.423 66.667 7.13 0.00 34.62 3.18
470 471 3.589654 CTCCAGCGCTCCGGTTCAA 62.590 63.158 7.13 0.00 34.62 2.69
471 472 4.069232 CTCCAGCGCTCCGGTTCA 62.069 66.667 7.13 0.00 34.62 3.18
472 473 3.591254 AACTCCAGCGCTCCGGTTC 62.591 63.158 7.13 0.00 34.62 3.62
473 474 3.626924 AACTCCAGCGCTCCGGTT 61.627 61.111 7.13 9.83 34.62 4.44
474 475 4.379243 CAACTCCAGCGCTCCGGT 62.379 66.667 7.13 2.97 38.40 5.28
476 477 4.749310 AGCAACTCCAGCGCTCCG 62.749 66.667 7.13 0.00 37.01 4.63
477 478 2.817396 GAGCAACTCCAGCGCTCC 60.817 66.667 7.13 0.00 45.14 4.70
479 480 1.515020 CTAGAGCAACTCCAGCGCT 59.485 57.895 2.64 2.64 44.34 5.92
480 481 1.520342 CCTAGAGCAACTCCAGCGC 60.520 63.158 0.00 0.00 37.01 5.92
481 482 1.142748 CCCTAGAGCAACTCCAGCG 59.857 63.158 0.00 0.00 37.01 5.18
482 483 0.905357 TTCCCTAGAGCAACTCCAGC 59.095 55.000 0.00 0.00 0.00 4.85
483 484 1.134551 GCTTCCCTAGAGCAACTCCAG 60.135 57.143 0.00 0.00 39.89 3.86
484 485 0.905357 GCTTCCCTAGAGCAACTCCA 59.095 55.000 0.00 0.00 39.89 3.86
485 486 0.905357 TGCTTCCCTAGAGCAACTCC 59.095 55.000 2.27 0.00 46.35 3.85
491 492 2.633488 ACGAAATTGCTTCCCTAGAGC 58.367 47.619 0.00 0.00 40.53 4.09
492 493 5.629079 AAAACGAAATTGCTTCCCTAGAG 57.371 39.130 0.00 0.00 0.00 2.43
493 494 5.998981 TGTAAAACGAAATTGCTTCCCTAGA 59.001 36.000 0.00 0.00 0.00 2.43
494 495 6.249035 TGTAAAACGAAATTGCTTCCCTAG 57.751 37.500 0.00 0.00 0.00 3.02
495 496 6.636562 TTGTAAAACGAAATTGCTTCCCTA 57.363 33.333 0.00 0.00 0.00 3.53
496 497 5.523438 TTGTAAAACGAAATTGCTTCCCT 57.477 34.783 0.00 0.00 0.00 4.20
497 498 6.591313 TTTTGTAAAACGAAATTGCTTCCC 57.409 33.333 0.00 0.00 0.00 3.97
498 499 8.331742 TCATTTTTGTAAAACGAAATTGCTTCC 58.668 29.630 0.00 0.00 34.90 3.46
499 500 9.862585 ATCATTTTTGTAAAACGAAATTGCTTC 57.137 25.926 0.00 0.00 34.90 3.86
500 501 9.649024 CATCATTTTTGTAAAACGAAATTGCTT 57.351 25.926 0.00 0.48 34.90 3.91
501 502 8.825745 ACATCATTTTTGTAAAACGAAATTGCT 58.174 25.926 0.00 0.30 34.90 3.91
502 503 8.986039 ACATCATTTTTGTAAAACGAAATTGC 57.014 26.923 0.00 0.00 34.90 3.56
503 504 9.579610 GGACATCATTTTTGTAAAACGAAATTG 57.420 29.630 0.00 7.74 35.63 2.32
504 505 8.769891 GGGACATCATTTTTGTAAAACGAAATT 58.230 29.630 0.00 0.00 32.02 1.82
505 506 7.115663 CGGGACATCATTTTTGTAAAACGAAAT 59.884 33.333 0.00 0.00 32.02 2.17
506 507 6.418226 CGGGACATCATTTTTGTAAAACGAAA 59.582 34.615 0.00 0.00 30.04 3.46
507 508 5.915758 CGGGACATCATTTTTGTAAAACGAA 59.084 36.000 0.00 0.00 0.00 3.85
508 509 5.453648 CGGGACATCATTTTTGTAAAACGA 58.546 37.500 0.00 0.00 0.00 3.85
509 510 4.619336 CCGGGACATCATTTTTGTAAAACG 59.381 41.667 0.00 0.00 0.00 3.60
510 511 4.926832 CCCGGGACATCATTTTTGTAAAAC 59.073 41.667 18.48 0.00 0.00 2.43
511 512 4.833380 TCCCGGGACATCATTTTTGTAAAA 59.167 37.500 22.63 0.00 0.00 1.52
512 513 4.408276 TCCCGGGACATCATTTTTGTAAA 58.592 39.130 22.63 0.00 0.00 2.01
513 514 4.035612 TCCCGGGACATCATTTTTGTAA 57.964 40.909 22.63 0.00 0.00 2.41
514 515 3.722908 TCCCGGGACATCATTTTTGTA 57.277 42.857 22.63 0.00 0.00 2.41
515 516 2.595750 TCCCGGGACATCATTTTTGT 57.404 45.000 22.63 0.00 0.00 2.83
516 517 3.489059 CGAATCCCGGGACATCATTTTTG 60.489 47.826 29.69 14.53 33.91 2.44
517 518 2.687935 CGAATCCCGGGACATCATTTTT 59.312 45.455 29.69 14.15 33.91 1.94
518 519 2.297701 CGAATCCCGGGACATCATTTT 58.702 47.619 29.69 15.04 33.91 1.82
519 520 1.967319 CGAATCCCGGGACATCATTT 58.033 50.000 29.69 15.92 33.91 2.32
520 521 0.535102 GCGAATCCCGGGACATCATT 60.535 55.000 29.69 16.80 39.04 2.57
521 522 1.071471 GCGAATCCCGGGACATCAT 59.929 57.895 29.69 6.51 39.04 2.45
522 523 2.028125 GAGCGAATCCCGGGACATCA 62.028 60.000 29.69 2.21 39.04 3.07
523 524 1.301009 GAGCGAATCCCGGGACATC 60.301 63.158 29.69 25.35 39.04 3.06
524 525 2.822399 GAGCGAATCCCGGGACAT 59.178 61.111 29.69 19.05 39.04 3.06
525 526 3.833645 CGAGCGAATCCCGGGACA 61.834 66.667 29.69 4.23 39.04 4.02
572 573 1.199097 CGCAGGCCAGAAAAATACGTT 59.801 47.619 5.01 0.00 0.00 3.99
579 580 1.614996 TTGAATCGCAGGCCAGAAAA 58.385 45.000 5.01 0.00 0.00 2.29
607 608 1.299165 CGTAGGCTTATCGCGTGCT 60.299 57.895 5.77 0.00 40.44 4.40
626 627 0.533032 GGCCTAGATGAGCCGTATCC 59.467 60.000 0.00 0.00 39.87 2.59
656 657 1.740025 GCGAGAGGGTTTGAAATGGAG 59.260 52.381 0.00 0.00 0.00 3.86
663 664 2.747686 GTGGGCGAGAGGGTTTGA 59.252 61.111 0.00 0.00 0.00 2.69
1018 1045 4.580551 GTCCCGTACCGGCGATGG 62.581 72.222 9.30 4.53 46.86 3.51
1041 1068 2.817396 GTCTTGAGCTGCTCCGCC 60.817 66.667 25.61 8.35 0.00 6.13
1353 1380 1.141053 AGAAGTTTCAGGAACCGTGCT 59.859 47.619 0.00 0.00 39.13 4.40
1467 1494 3.265791 GAGTTCGCCATTCTGACTCAAT 58.734 45.455 0.00 0.00 0.00 2.57
1491 1518 2.397044 TTGTCTCCCCCAATTGCTTT 57.603 45.000 0.00 0.00 0.00 3.51
1502 1529 2.125766 AACCGCCTCCTTTGTCTCCC 62.126 60.000 0.00 0.00 0.00 4.30
1622 1649 1.699634 CCTTCAGTTCCTCCACCTTCA 59.300 52.381 0.00 0.00 0.00 3.02
1662 1689 0.466922 CCACCCTTGCATCCATCTCC 60.467 60.000 0.00 0.00 0.00 3.71
1728 1755 3.873910 TGCCATTACTTCAGCCTCTAAC 58.126 45.455 0.00 0.00 0.00 2.34
1933 1960 2.848694 TGAGGCTCTCCAATTCCTTCAT 59.151 45.455 16.72 0.00 33.74 2.57
1996 2023 1.052124 TTCTCACGTGTCACCCCCTT 61.052 55.000 16.51 0.00 0.00 3.95
2035 2062 0.473694 TCCTCCAACTCAGCCCTCAA 60.474 55.000 0.00 0.00 0.00 3.02
2229 2256 1.205655 CTCAACTCTCCAATCTCGCCA 59.794 52.381 0.00 0.00 0.00 5.69
2230 2257 1.472376 CCTCAACTCTCCAATCTCGCC 60.472 57.143 0.00 0.00 0.00 5.54
2232 2259 4.118410 CAATCCTCAACTCTCCAATCTCG 58.882 47.826 0.00 0.00 0.00 4.04
2323 2350 2.139118 GTTCTTCTTCTGCGCTTCAGT 58.861 47.619 9.73 0.00 43.32 3.41
2360 2387 3.641454 TGGCGGCATACACCCACA 61.641 61.111 7.97 0.00 0.00 4.17
2585 2612 7.222417 TCAACAGCAACAAGAACAAACATATTG 59.778 33.333 0.00 0.00 0.00 1.90
2643 2670 1.771565 ACACCCAGCAATCATCATGG 58.228 50.000 0.00 0.00 0.00 3.66
2659 2686 0.459489 TTGCCCTGACAGCAAAACAC 59.541 50.000 0.00 0.00 46.71 3.32
2685 2712 3.687045 ACAGGAAATCCCCATATACCCA 58.313 45.455 0.00 0.00 36.42 4.51
2719 2746 3.316029 TCCATTTTGCAAGCCGATATGAG 59.684 43.478 0.00 0.00 0.00 2.90
2735 2762 2.025887 CCTACCAGCTCAAGGTCCATTT 60.026 50.000 0.00 0.00 40.54 2.32
2736 2763 1.561542 CCTACCAGCTCAAGGTCCATT 59.438 52.381 0.00 0.00 40.54 3.16
2763 2790 4.262721 CCAGTACTGGCCAAGTAACAACTA 60.263 45.833 28.48 0.00 43.08 2.24
2912 2962 3.701542 CCTTGTGTCCTAGTGCTATCAGA 59.298 47.826 0.00 0.00 0.00 3.27
2913 2963 3.181471 CCCTTGTGTCCTAGTGCTATCAG 60.181 52.174 0.00 0.00 0.00 2.90
2914 2964 2.766263 CCCTTGTGTCCTAGTGCTATCA 59.234 50.000 0.00 0.00 0.00 2.15
2929 2980 2.159179 AACTGGAAAGCAACCCTTGT 57.841 45.000 0.00 0.00 33.01 3.16
2935 2986 2.687935 TCTGTGGAAACTGGAAAGCAAC 59.312 45.455 0.00 0.00 0.00 4.17
2958 3009 6.755542 TCATCACCACCATACAACCATATA 57.244 37.500 0.00 0.00 0.00 0.86
3033 3084 7.970061 GCATTTCTCTACATACATGAGCAAAAA 59.030 33.333 0.00 0.00 0.00 1.94
3066 3119 4.102649 GTTTTCACGTGGTTCAGAAAAGG 58.897 43.478 17.00 0.00 39.70 3.11
3068 3121 4.477780 GTGTTTTCACGTGGTTCAGAAAA 58.522 39.130 17.00 10.82 41.13 2.29
3101 3154 2.105821 TGACGTTGAGATCCCTTTTGGT 59.894 45.455 0.00 0.00 38.10 3.67
3119 3172 5.060940 GTGCTTTTGTCAACTTTGAAGTGAC 59.939 40.000 14.21 14.21 39.66 3.67
3286 3443 9.056306 GTTTTCTTCGCTTGAATTATCTTTCTC 57.944 33.333 0.00 0.00 0.00 2.87
3287 3444 8.567948 TGTTTTCTTCGCTTGAATTATCTTTCT 58.432 29.630 0.00 0.00 0.00 2.52
3288 3445 8.728088 TGTTTTCTTCGCTTGAATTATCTTTC 57.272 30.769 0.00 0.00 0.00 2.62
3329 3487 9.636789 TGCCTCTGTATTCTAGTATTACACTAA 57.363 33.333 0.00 0.00 39.28 2.24
3341 3499 5.066117 CGTAGTTCTGTGCCTCTGTATTCTA 59.934 44.000 0.00 0.00 0.00 2.10
3385 3543 5.002189 GCAGTGCGTAAATTATCACGAAAAC 59.998 40.000 0.00 5.96 40.56 2.43
3388 3546 3.680458 TGCAGTGCGTAAATTATCACGAA 59.320 39.130 11.20 0.00 40.56 3.85
3389 3547 3.061563 GTGCAGTGCGTAAATTATCACGA 59.938 43.478 11.20 0.00 40.56 4.35
3390 3548 3.062099 AGTGCAGTGCGTAAATTATCACG 59.938 43.478 11.20 3.52 41.04 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.