Multiple sequence alignment - TraesCS5A01G098300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G098300 chr5A 100.000 2510 0 0 1 2510 139680946 139683455 0.000000e+00 4636
1 TraesCS5A01G098300 chr5A 90.421 261 25 0 367 627 692261431 692261691 6.650000e-91 344
2 TraesCS5A01G098300 chr5D 95.820 909 36 2 624 1530 125738342 125737434 0.000000e+00 1467
3 TraesCS5A01G098300 chr5D 96.060 533 19 1 1781 2313 125737022 125736492 0.000000e+00 867
4 TraesCS5A01G098300 chr5D 90.110 273 25 2 359 631 307096128 307096398 1.100000e-93 353
5 TraesCS5A01G098300 chr5D 92.920 113 8 0 1555 1667 125737304 125737192 5.550000e-37 165
6 TraesCS5A01G098300 chr5B 93.333 915 44 6 621 1527 138345744 138346649 0.000000e+00 1336
7 TraesCS5A01G098300 chr5B 95.444 439 18 2 2073 2510 138349215 138349652 0.000000e+00 699
8 TraesCS5A01G098300 chr5B 95.652 184 8 0 1928 2111 138347290 138347473 1.890000e-76 296
9 TraesCS5A01G098300 chr5B 93.077 130 8 1 1758 1886 138347155 138347284 3.300000e-44 189
10 TraesCS5A01G098300 chr5B 92.553 94 4 1 1694 1784 498541182 498541275 5.630000e-27 132
11 TraesCS5A01G098300 chr7A 80.907 728 94 31 810 1511 690918695 690917987 1.320000e-147 532
12 TraesCS5A01G098300 chr7A 84.570 512 55 18 1009 1511 690930253 690929757 1.040000e-133 486
13 TraesCS5A01G098300 chr7A 90.722 97 7 1 1697 1791 7584937 7584841 7.290000e-26 128
14 TraesCS5A01G098300 chr7D 79.505 727 116 24 811 1511 598485845 598485126 1.040000e-133 486
15 TraesCS5A01G098300 chr7D 79.501 722 103 38 815 1511 598497252 598496551 2.920000e-129 472
16 TraesCS5A01G098300 chr7D 90.152 264 25 1 366 628 459743135 459742872 2.390000e-90 342
17 TraesCS5A01G098300 chr7B 82.616 581 68 19 942 1511 677667992 677667434 1.350000e-132 483
18 TraesCS5A01G098300 chr7B 91.403 221 19 0 1291 1511 677538444 677538224 1.130000e-78 303
19 TraesCS5A01G098300 chr7B 87.600 250 30 1 1263 1511 677522658 677522409 3.160000e-74 289
20 TraesCS5A01G098300 chr7B 80.000 415 57 19 812 1212 677538959 677538557 1.470000e-72 283
21 TraesCS5A01G098300 chr4A 90.840 262 24 0 366 627 410364836 410365097 3.970000e-93 351
22 TraesCS5A01G098300 chr4A 89.850 266 25 2 366 630 104373315 104373051 8.600000e-90 340
23 TraesCS5A01G098300 chr4A 90.625 160 14 1 1044 1203 574385232 574385074 7.030000e-51 211
24 TraesCS5A01G098300 chr2D 90.189 265 22 4 365 628 403189089 403188828 2.390000e-90 342
25 TraesCS5A01G098300 chr2D 90.000 100 6 2 1700 1796 511529811 511529713 2.620000e-25 126
26 TraesCS5A01G098300 chr6A 89.850 266 25 2 363 627 53260255 53260519 8.600000e-90 340
27 TraesCS5A01G098300 chr3A 90.076 262 26 0 366 627 23631282 23631543 8.600000e-90 340
28 TraesCS5A01G098300 chr3A 75.895 419 81 16 1058 1463 746261453 746261864 1.970000e-46 196
29 TraesCS5A01G098300 chr2A 89.811 265 26 1 363 627 684441524 684441261 3.090000e-89 339
30 TraesCS5A01G098300 chr3D 76.887 424 68 22 1058 1463 611407373 611407784 1.960000e-51 213
31 TraesCS5A01G098300 chr3D 91.000 100 5 2 1692 1788 531693684 531693782 5.630000e-27 132
32 TraesCS5A01G098300 chr3D 91.667 96 5 1 1694 1786 137515213 137515118 2.030000e-26 130
33 TraesCS5A01G098300 chr4B 90.968 155 14 0 1044 1198 41743710 41743864 2.530000e-50 209
34 TraesCS5A01G098300 chr4D 89.474 152 16 0 1044 1195 29176704 29176855 2.550000e-45 193
35 TraesCS5A01G098300 chr6D 89.720 107 5 3 1698 1799 95714238 95714133 5.630000e-27 132
36 TraesCS5A01G098300 chr3B 91.489 94 5 1 1693 1783 293523620 293523527 2.620000e-25 126
37 TraesCS5A01G098300 chr1B 92.222 90 4 1 1700 1786 552607654 552607565 9.430000e-25 124
38 TraesCS5A01G098300 chr1B 93.103 87 3 1 1700 1783 552607567 552607653 9.430000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G098300 chr5A 139680946 139683455 2509 False 4636 4636 100.000000 1 2510 1 chr5A.!!$F1 2509
1 TraesCS5A01G098300 chr5D 125736492 125738342 1850 True 833 1467 94.933333 624 2313 3 chr5D.!!$R1 1689
2 TraesCS5A01G098300 chr5B 138345744 138349652 3908 False 630 1336 94.376500 621 2510 4 chr5B.!!$F2 1889
3 TraesCS5A01G098300 chr7A 690917987 690918695 708 True 532 532 80.907000 810 1511 1 chr7A.!!$R2 701
4 TraesCS5A01G098300 chr7D 598485126 598485845 719 True 486 486 79.505000 811 1511 1 chr7D.!!$R2 700
5 TraesCS5A01G098300 chr7D 598496551 598497252 701 True 472 472 79.501000 815 1511 1 chr7D.!!$R3 696
6 TraesCS5A01G098300 chr7B 677667434 677667992 558 True 483 483 82.616000 942 1511 1 chr7B.!!$R2 569
7 TraesCS5A01G098300 chr7B 677538224 677538959 735 True 293 303 85.701500 812 1511 2 chr7B.!!$R3 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.034283 GACAGTACTCCCTCCGGTCT 60.034 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 2148 0.17691 GCTTGACTGCTACTCCCTCC 59.823 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.816640 GGTATAATATGCCCATTTTTGACAAG 57.183 34.615 0.00 0.00 0.00 3.16
26 27 7.872483 GGTATAATATGCCCATTTTTGACAAGG 59.128 37.037 0.00 0.00 0.00 3.61
27 28 7.673641 ATAATATGCCCATTTTTGACAAGGA 57.326 32.000 0.00 0.00 0.00 3.36
28 29 3.967332 ATGCCCATTTTTGACAAGGAG 57.033 42.857 0.00 0.00 0.00 3.69
29 30 1.969923 TGCCCATTTTTGACAAGGAGG 59.030 47.619 0.00 0.00 0.00 4.30
30 31 1.970640 GCCCATTTTTGACAAGGAGGT 59.029 47.619 0.00 0.00 0.00 3.85
31 32 2.289010 GCCCATTTTTGACAAGGAGGTG 60.289 50.000 0.00 0.00 0.00 4.00
32 33 2.965147 CCCATTTTTGACAAGGAGGTGT 59.035 45.455 0.00 0.00 0.00 4.16
33 34 3.387699 CCCATTTTTGACAAGGAGGTGTT 59.612 43.478 0.00 0.00 0.00 3.32
34 35 4.141733 CCCATTTTTGACAAGGAGGTGTTT 60.142 41.667 0.00 0.00 0.00 2.83
35 36 5.427378 CCATTTTTGACAAGGAGGTGTTTT 58.573 37.500 0.00 0.00 0.00 2.43
36 37 5.879777 CCATTTTTGACAAGGAGGTGTTTTT 59.120 36.000 0.00 0.00 0.00 1.94
37 38 6.183360 CCATTTTTGACAAGGAGGTGTTTTTG 60.183 38.462 0.00 0.00 0.00 2.44
38 39 3.518634 TTGACAAGGAGGTGTTTTTGC 57.481 42.857 0.00 0.00 0.00 3.68
39 40 1.403679 TGACAAGGAGGTGTTTTTGCG 59.596 47.619 0.00 0.00 0.00 4.85
40 41 0.744281 ACAAGGAGGTGTTTTTGCGG 59.256 50.000 0.00 0.00 0.00 5.69
41 42 0.597377 CAAGGAGGTGTTTTTGCGGC 60.597 55.000 0.00 0.00 0.00 6.53
42 43 1.744320 AAGGAGGTGTTTTTGCGGCC 61.744 55.000 0.00 0.00 0.00 6.13
43 44 2.494530 GGAGGTGTTTTTGCGGCCA 61.495 57.895 2.24 0.00 0.00 5.36
44 45 1.439644 GAGGTGTTTTTGCGGCCAA 59.560 52.632 2.24 0.00 0.00 4.52
45 46 0.874175 GAGGTGTTTTTGCGGCCAAC 60.874 55.000 2.24 0.00 0.00 3.77
46 47 1.142965 GGTGTTTTTGCGGCCAACT 59.857 52.632 2.24 0.00 0.00 3.16
47 48 0.461163 GGTGTTTTTGCGGCCAACTT 60.461 50.000 2.24 0.00 0.00 2.66
48 49 1.364721 GTGTTTTTGCGGCCAACTTT 58.635 45.000 2.24 0.00 0.00 2.66
49 50 1.061857 GTGTTTTTGCGGCCAACTTTG 59.938 47.619 2.24 0.00 0.00 2.77
50 51 1.338200 TGTTTTTGCGGCCAACTTTGT 60.338 42.857 2.24 0.00 0.00 2.83
51 52 1.061857 GTTTTTGCGGCCAACTTTGTG 59.938 47.619 2.24 0.00 0.00 3.33
52 53 0.247736 TTTTGCGGCCAACTTTGTGT 59.752 45.000 2.24 0.00 0.00 3.72
53 54 0.179124 TTTGCGGCCAACTTTGTGTC 60.179 50.000 2.24 0.00 0.00 3.67
54 55 1.034838 TTGCGGCCAACTTTGTGTCT 61.035 50.000 2.24 0.00 0.00 3.41
55 56 1.034838 TGCGGCCAACTTTGTGTCTT 61.035 50.000 2.24 0.00 0.00 3.01
56 57 0.317854 GCGGCCAACTTTGTGTCTTC 60.318 55.000 2.24 0.00 0.00 2.87
57 58 0.310854 CGGCCAACTTTGTGTCTTCC 59.689 55.000 2.24 0.00 0.00 3.46
58 59 1.692411 GGCCAACTTTGTGTCTTCCT 58.308 50.000 0.00 0.00 0.00 3.36
59 60 2.031870 GGCCAACTTTGTGTCTTCCTT 58.968 47.619 0.00 0.00 0.00 3.36
60 61 3.219281 GGCCAACTTTGTGTCTTCCTTA 58.781 45.455 0.00 0.00 0.00 2.69
61 62 3.253432 GGCCAACTTTGTGTCTTCCTTAG 59.747 47.826 0.00 0.00 0.00 2.18
62 63 3.883489 GCCAACTTTGTGTCTTCCTTAGT 59.117 43.478 0.00 0.00 0.00 2.24
63 64 4.261197 GCCAACTTTGTGTCTTCCTTAGTG 60.261 45.833 0.00 0.00 0.00 2.74
64 65 4.275936 CCAACTTTGTGTCTTCCTTAGTGG 59.724 45.833 0.00 0.00 37.10 4.00
65 66 4.772886 ACTTTGTGTCTTCCTTAGTGGT 57.227 40.909 0.00 0.00 37.07 4.16
66 67 4.451900 ACTTTGTGTCTTCCTTAGTGGTG 58.548 43.478 0.00 0.00 37.07 4.17
67 68 4.163458 ACTTTGTGTCTTCCTTAGTGGTGA 59.837 41.667 0.00 0.00 37.07 4.02
68 69 4.336889 TTGTGTCTTCCTTAGTGGTGAG 57.663 45.455 0.00 0.00 37.07 3.51
69 70 3.572642 TGTGTCTTCCTTAGTGGTGAGA 58.427 45.455 0.00 0.00 37.07 3.27
70 71 3.574396 TGTGTCTTCCTTAGTGGTGAGAG 59.426 47.826 0.00 0.00 37.07 3.20
71 72 3.056465 GTGTCTTCCTTAGTGGTGAGAGG 60.056 52.174 0.00 0.00 37.07 3.69
72 73 2.498078 GTCTTCCTTAGTGGTGAGAGGG 59.502 54.545 0.00 0.00 37.07 4.30
73 74 2.382305 TCTTCCTTAGTGGTGAGAGGGA 59.618 50.000 0.00 0.00 37.07 4.20
74 75 2.233305 TCCTTAGTGGTGAGAGGGAC 57.767 55.000 0.00 0.00 37.07 4.46
75 76 0.818296 CCTTAGTGGTGAGAGGGACG 59.182 60.000 0.00 0.00 0.00 4.79
76 77 1.546961 CTTAGTGGTGAGAGGGACGT 58.453 55.000 0.00 0.00 0.00 4.34
77 78 1.473278 CTTAGTGGTGAGAGGGACGTC 59.527 57.143 7.13 7.13 0.00 4.34
78 79 0.675837 TAGTGGTGAGAGGGACGTCG 60.676 60.000 9.92 0.00 0.00 5.12
79 80 1.970114 GTGGTGAGAGGGACGTCGA 60.970 63.158 9.92 0.00 0.00 4.20
80 81 1.674651 TGGTGAGAGGGACGTCGAG 60.675 63.158 9.92 0.00 0.00 4.04
81 82 1.376942 GGTGAGAGGGACGTCGAGA 60.377 63.158 9.92 0.00 0.00 4.04
82 83 1.370587 GGTGAGAGGGACGTCGAGAG 61.371 65.000 9.92 0.00 0.00 3.20
83 84 1.745864 TGAGAGGGACGTCGAGAGC 60.746 63.158 9.92 0.00 0.00 4.09
84 85 2.815298 GAGAGGGACGTCGAGAGCG 61.815 68.421 9.92 0.00 39.35 5.03
85 86 4.539881 GAGGGACGTCGAGAGCGC 62.540 72.222 9.92 0.00 37.46 5.92
113 114 4.170062 CAAGCGCGGAGGCATGTG 62.170 66.667 8.83 0.00 39.92 3.21
119 120 2.741985 CGGAGGCATGTGCGTGAA 60.742 61.111 4.78 0.00 43.26 3.18
120 121 2.870372 GGAGGCATGTGCGTGAAC 59.130 61.111 4.78 0.00 43.26 3.18
121 122 1.672356 GGAGGCATGTGCGTGAACT 60.672 57.895 4.78 0.00 43.26 3.01
122 123 1.499056 GAGGCATGTGCGTGAACTG 59.501 57.895 4.78 0.00 43.26 3.16
123 124 0.950555 GAGGCATGTGCGTGAACTGA 60.951 55.000 4.78 0.00 43.26 3.41
124 125 0.321919 AGGCATGTGCGTGAACTGAT 60.322 50.000 0.00 0.00 43.26 2.90
125 126 0.523072 GGCATGTGCGTGAACTGATT 59.477 50.000 0.00 0.00 43.26 2.57
126 127 1.609932 GCATGTGCGTGAACTGATTG 58.390 50.000 0.00 0.00 0.00 2.67
127 128 1.069022 GCATGTGCGTGAACTGATTGT 60.069 47.619 0.00 0.00 0.00 2.71
128 129 2.843077 CATGTGCGTGAACTGATTGTC 58.157 47.619 0.00 0.00 0.00 3.18
129 130 1.946745 TGTGCGTGAACTGATTGTCA 58.053 45.000 0.00 0.00 0.00 3.58
130 131 2.284190 TGTGCGTGAACTGATTGTCAA 58.716 42.857 0.00 0.00 0.00 3.18
131 132 2.877786 TGTGCGTGAACTGATTGTCAAT 59.122 40.909 0.00 0.00 0.00 2.57
132 133 3.228749 GTGCGTGAACTGATTGTCAATG 58.771 45.455 1.88 0.00 0.00 2.82
133 134 2.877786 TGCGTGAACTGATTGTCAATGT 59.122 40.909 1.88 0.00 0.00 2.71
134 135 3.228749 GCGTGAACTGATTGTCAATGTG 58.771 45.455 1.88 0.00 0.00 3.21
135 136 3.228749 CGTGAACTGATTGTCAATGTGC 58.771 45.455 1.88 0.00 0.00 4.57
136 137 3.228749 GTGAACTGATTGTCAATGTGCG 58.771 45.455 1.88 0.00 0.00 5.34
137 138 2.245096 GAACTGATTGTCAATGTGCGC 58.755 47.619 1.88 0.00 0.00 6.09
138 139 1.237533 ACTGATTGTCAATGTGCGCA 58.762 45.000 5.66 5.66 0.00 6.09
139 140 1.608109 ACTGATTGTCAATGTGCGCAA 59.392 42.857 14.00 2.60 0.00 4.85
140 141 2.247637 CTGATTGTCAATGTGCGCAAG 58.752 47.619 14.00 2.33 43.44 4.01
141 142 1.878734 TGATTGTCAATGTGCGCAAGA 59.121 42.857 14.00 5.19 43.02 3.02
142 143 2.095617 TGATTGTCAATGTGCGCAAGAG 60.096 45.455 14.00 2.32 43.02 2.85
143 144 0.592637 TTGTCAATGTGCGCAAGAGG 59.407 50.000 14.00 2.29 43.02 3.69
144 145 0.534877 TGTCAATGTGCGCAAGAGGT 60.535 50.000 14.00 0.00 43.02 3.85
145 146 1.270571 TGTCAATGTGCGCAAGAGGTA 60.271 47.619 14.00 0.00 43.02 3.08
146 147 1.394917 GTCAATGTGCGCAAGAGGTAG 59.605 52.381 14.00 0.00 43.02 3.18
147 148 1.275010 TCAATGTGCGCAAGAGGTAGA 59.725 47.619 14.00 0.82 43.02 2.59
148 149 1.662629 CAATGTGCGCAAGAGGTAGAG 59.337 52.381 14.00 0.00 43.02 2.43
149 150 0.176680 ATGTGCGCAAGAGGTAGAGG 59.823 55.000 14.00 0.00 43.02 3.69
150 151 0.898326 TGTGCGCAAGAGGTAGAGGA 60.898 55.000 14.00 0.00 43.02 3.71
151 152 0.246635 GTGCGCAAGAGGTAGAGGAA 59.753 55.000 14.00 0.00 43.02 3.36
152 153 0.973632 TGCGCAAGAGGTAGAGGAAA 59.026 50.000 8.16 0.00 43.02 3.13
153 154 1.346395 TGCGCAAGAGGTAGAGGAAAA 59.654 47.619 8.16 0.00 43.02 2.29
154 155 2.003301 GCGCAAGAGGTAGAGGAAAAG 58.997 52.381 0.30 0.00 43.02 2.27
155 156 2.622436 CGCAAGAGGTAGAGGAAAAGG 58.378 52.381 0.00 0.00 43.02 3.11
156 157 2.678190 CGCAAGAGGTAGAGGAAAAGGG 60.678 54.545 0.00 0.00 43.02 3.95
157 158 2.941860 GCAAGAGGTAGAGGAAAAGGGC 60.942 54.545 0.00 0.00 0.00 5.19
158 159 1.196012 AGAGGTAGAGGAAAAGGGCG 58.804 55.000 0.00 0.00 0.00 6.13
159 160 0.178301 GAGGTAGAGGAAAAGGGCGG 59.822 60.000 0.00 0.00 0.00 6.13
160 161 0.546988 AGGTAGAGGAAAAGGGCGGT 60.547 55.000 0.00 0.00 0.00 5.68
161 162 0.392595 GGTAGAGGAAAAGGGCGGTG 60.393 60.000 0.00 0.00 0.00 4.94
162 163 0.392595 GTAGAGGAAAAGGGCGGTGG 60.393 60.000 0.00 0.00 0.00 4.61
163 164 1.559065 TAGAGGAAAAGGGCGGTGGG 61.559 60.000 0.00 0.00 0.00 4.61
164 165 3.938637 GAGGAAAAGGGCGGTGGGG 62.939 68.421 0.00 0.00 0.00 4.96
166 167 4.986708 GAAAAGGGCGGTGGGGCA 62.987 66.667 0.00 0.00 44.56 5.36
167 168 4.548513 AAAAGGGCGGTGGGGCAA 62.549 61.111 0.00 0.00 44.56 4.52
168 169 4.548513 AAAGGGCGGTGGGGCAAA 62.549 61.111 0.00 0.00 44.56 3.68
172 173 3.230990 GGCGGTGGGGCAAACTTT 61.231 61.111 0.00 0.00 41.77 2.66
173 174 2.802724 GGCGGTGGGGCAAACTTTT 61.803 57.895 0.00 0.00 41.77 2.27
174 175 1.145156 GCGGTGGGGCAAACTTTTT 59.855 52.632 0.00 0.00 0.00 1.94
175 176 1.157257 GCGGTGGGGCAAACTTTTTG 61.157 55.000 0.00 0.00 0.00 2.44
176 177 0.531753 CGGTGGGGCAAACTTTTTGG 60.532 55.000 1.07 0.00 0.00 3.28
177 178 0.817634 GGTGGGGCAAACTTTTTGGC 60.818 55.000 14.94 14.94 43.30 4.52
183 184 3.624326 GGCAAACTTTTTGGCCAAATC 57.376 42.857 30.78 13.43 45.70 2.17
184 185 3.213506 GGCAAACTTTTTGGCCAAATCT 58.786 40.909 30.78 13.63 45.70 2.40
185 186 3.003585 GGCAAACTTTTTGGCCAAATCTG 59.996 43.478 30.78 23.32 45.70 2.90
186 187 3.876320 GCAAACTTTTTGGCCAAATCTGA 59.124 39.130 30.78 13.98 0.00 3.27
187 188 4.260743 GCAAACTTTTTGGCCAAATCTGAC 60.261 41.667 30.78 13.78 0.00 3.51
188 189 3.369546 ACTTTTTGGCCAAATCTGACG 57.630 42.857 30.78 15.94 0.00 4.35
189 190 2.035832 ACTTTTTGGCCAAATCTGACGG 59.964 45.455 30.78 16.72 0.00 4.79
190 191 0.316841 TTTTGGCCAAATCTGACGGC 59.683 50.000 30.78 6.13 45.47 5.68
193 194 2.361104 GCCAAATCTGACGGCCCA 60.361 61.111 0.00 0.00 40.07 5.36
194 195 2.700773 GCCAAATCTGACGGCCCAC 61.701 63.158 0.00 0.00 40.07 4.61
205 206 4.148825 GGCCCACGAGACTCGCAT 62.149 66.667 24.38 3.24 45.12 4.73
206 207 2.583593 GCCCACGAGACTCGCATC 60.584 66.667 24.38 7.88 45.12 3.91
207 208 3.069980 GCCCACGAGACTCGCATCT 62.070 63.158 24.38 2.05 45.12 2.90
208 209 1.226802 CCCACGAGACTCGCATCTG 60.227 63.158 24.38 14.55 45.12 2.90
209 210 1.875813 CCACGAGACTCGCATCTGC 60.876 63.158 24.38 0.00 45.12 4.26
210 211 1.875813 CACGAGACTCGCATCTGCC 60.876 63.158 24.38 0.00 45.12 4.85
211 212 2.279120 CGAGACTCGCATCTGCCC 60.279 66.667 12.67 0.00 37.91 5.36
212 213 2.279120 GAGACTCGCATCTGCCCG 60.279 66.667 0.00 0.00 37.91 6.13
213 214 3.781770 GAGACTCGCATCTGCCCGG 62.782 68.421 0.00 0.00 37.91 5.73
214 215 3.838271 GACTCGCATCTGCCCGGA 61.838 66.667 0.73 0.00 37.91 5.14
215 216 3.157217 GACTCGCATCTGCCCGGAT 62.157 63.158 0.73 0.00 37.91 4.18
216 217 2.356793 CTCGCATCTGCCCGGATC 60.357 66.667 0.73 0.00 37.91 3.36
217 218 4.284860 TCGCATCTGCCCGGATCG 62.285 66.667 0.73 0.00 37.91 3.69
236 237 0.512952 GGACGCCGATCAATATGTGC 59.487 55.000 0.00 0.00 0.00 4.57
237 238 0.512952 GACGCCGATCAATATGTGCC 59.487 55.000 0.00 0.00 0.00 5.01
238 239 0.106708 ACGCCGATCAATATGTGCCT 59.893 50.000 0.00 0.00 0.00 4.75
239 240 1.343142 ACGCCGATCAATATGTGCCTA 59.657 47.619 0.00 0.00 0.00 3.93
240 241 2.028112 ACGCCGATCAATATGTGCCTAT 60.028 45.455 0.00 0.00 0.00 2.57
241 242 3.002791 CGCCGATCAATATGTGCCTATT 58.997 45.455 0.00 0.00 0.00 1.73
242 243 3.181517 CGCCGATCAATATGTGCCTATTG 60.182 47.826 0.00 5.03 39.44 1.90
243 244 3.426695 GCCGATCAATATGTGCCTATTGC 60.427 47.826 0.00 0.00 38.45 3.56
244 245 4.005650 CCGATCAATATGTGCCTATTGCT 58.994 43.478 0.00 0.00 42.00 3.91
245 246 5.178061 CCGATCAATATGTGCCTATTGCTA 58.822 41.667 0.00 0.00 42.00 3.49
246 247 5.819379 CCGATCAATATGTGCCTATTGCTAT 59.181 40.000 0.00 0.00 42.00 2.97
247 248 6.018425 CCGATCAATATGTGCCTATTGCTATC 60.018 42.308 0.00 5.06 42.00 2.08
248 249 6.018425 CGATCAATATGTGCCTATTGCTATCC 60.018 42.308 0.00 0.00 42.00 2.59
249 250 6.378661 TCAATATGTGCCTATTGCTATCCT 57.621 37.500 6.10 0.00 42.00 3.24
250 251 6.782986 TCAATATGTGCCTATTGCTATCCTT 58.217 36.000 6.10 0.00 42.00 3.36
251 252 6.656270 TCAATATGTGCCTATTGCTATCCTTG 59.344 38.462 6.10 0.00 42.00 3.61
252 253 2.575532 TGTGCCTATTGCTATCCTTGC 58.424 47.619 0.00 0.00 42.00 4.01
253 254 1.532868 GTGCCTATTGCTATCCTTGCG 59.467 52.381 0.00 0.00 42.00 4.85
254 255 0.519077 GCCTATTGCTATCCTTGCGC 59.481 55.000 0.00 0.00 36.87 6.09
255 256 0.792640 CCTATTGCTATCCTTGCGCG 59.207 55.000 0.00 0.00 0.00 6.86
256 257 1.605457 CCTATTGCTATCCTTGCGCGA 60.605 52.381 12.10 0.00 0.00 5.87
257 258 1.457303 CTATTGCTATCCTTGCGCGAC 59.543 52.381 12.10 0.88 0.00 5.19
258 259 0.461870 ATTGCTATCCTTGCGCGACA 60.462 50.000 12.10 4.31 0.00 4.35
259 260 1.083806 TTGCTATCCTTGCGCGACAG 61.084 55.000 12.10 3.69 0.00 3.51
260 261 2.875786 GCTATCCTTGCGCGACAGC 61.876 63.158 12.10 0.00 40.74 4.40
261 262 2.202878 TATCCTTGCGCGACAGCC 60.203 61.111 12.10 0.00 41.18 4.85
262 263 2.906182 CTATCCTTGCGCGACAGCCA 62.906 60.000 12.10 0.00 41.18 4.75
263 264 2.514510 TATCCTTGCGCGACAGCCAA 62.515 55.000 12.10 2.57 41.18 4.52
264 265 3.659092 CCTTGCGCGACAGCCAAA 61.659 61.111 12.10 0.00 41.18 3.28
265 266 2.427410 CTTGCGCGACAGCCAAAC 60.427 61.111 12.10 0.00 41.18 2.93
266 267 3.179869 CTTGCGCGACAGCCAAACA 62.180 57.895 12.10 0.00 41.18 2.83
267 268 2.660553 CTTGCGCGACAGCCAAACAA 62.661 55.000 12.10 0.00 41.18 2.83
268 269 2.427410 GCGCGACAGCCAAACAAG 60.427 61.111 12.10 0.00 41.18 3.16
269 270 3.022287 CGCGACAGCCAAACAAGT 58.978 55.556 0.00 0.00 41.18 3.16
270 271 1.355210 CGCGACAGCCAAACAAGTT 59.645 52.632 0.00 0.00 41.18 2.66
271 272 0.929824 CGCGACAGCCAAACAAGTTG 60.930 55.000 0.00 0.00 41.18 3.16
281 282 3.473923 CAAACAAGTTGGGCTGGAATT 57.526 42.857 7.96 0.00 33.18 2.17
282 283 3.132925 CAAACAAGTTGGGCTGGAATTG 58.867 45.455 7.96 0.00 33.18 2.32
283 284 2.086610 ACAAGTTGGGCTGGAATTGT 57.913 45.000 7.96 0.00 0.00 2.71
284 285 3.237268 ACAAGTTGGGCTGGAATTGTA 57.763 42.857 7.96 0.00 0.00 2.41
285 286 3.571590 ACAAGTTGGGCTGGAATTGTAA 58.428 40.909 7.96 0.00 0.00 2.41
286 287 3.964031 ACAAGTTGGGCTGGAATTGTAAA 59.036 39.130 7.96 0.00 0.00 2.01
287 288 4.407296 ACAAGTTGGGCTGGAATTGTAAAA 59.593 37.500 7.96 0.00 0.00 1.52
288 289 5.071653 ACAAGTTGGGCTGGAATTGTAAAAT 59.928 36.000 7.96 0.00 0.00 1.82
289 290 5.151297 AGTTGGGCTGGAATTGTAAAATG 57.849 39.130 0.00 0.00 0.00 2.32
290 291 4.837860 AGTTGGGCTGGAATTGTAAAATGA 59.162 37.500 0.00 0.00 0.00 2.57
291 292 5.306678 AGTTGGGCTGGAATTGTAAAATGAA 59.693 36.000 0.00 0.00 0.00 2.57
292 293 5.815233 TGGGCTGGAATTGTAAAATGAAA 57.185 34.783 0.00 0.00 0.00 2.69
293 294 6.371595 TGGGCTGGAATTGTAAAATGAAAT 57.628 33.333 0.00 0.00 0.00 2.17
294 295 6.405538 TGGGCTGGAATTGTAAAATGAAATC 58.594 36.000 0.00 0.00 0.00 2.17
295 296 5.817296 GGGCTGGAATTGTAAAATGAAATCC 59.183 40.000 0.00 0.00 0.00 3.01
296 297 5.519927 GGCTGGAATTGTAAAATGAAATCCG 59.480 40.000 0.00 0.00 0.00 4.18
297 298 6.099341 GCTGGAATTGTAAAATGAAATCCGT 58.901 36.000 0.00 0.00 0.00 4.69
298 299 6.034898 GCTGGAATTGTAAAATGAAATCCGTG 59.965 38.462 0.00 0.00 0.00 4.94
299 300 7.220741 TGGAATTGTAAAATGAAATCCGTGA 57.779 32.000 0.00 0.00 0.00 4.35
300 301 7.661968 TGGAATTGTAAAATGAAATCCGTGAA 58.338 30.769 0.00 0.00 0.00 3.18
301 302 8.310382 TGGAATTGTAAAATGAAATCCGTGAAT 58.690 29.630 0.00 0.00 0.00 2.57
302 303 9.150348 GGAATTGTAAAATGAAATCCGTGAATT 57.850 29.630 0.00 0.00 0.00 2.17
304 305 8.702163 ATTGTAAAATGAAATCCGTGAATTCC 57.298 30.769 2.27 0.00 0.00 3.01
305 306 7.220741 TGTAAAATGAAATCCGTGAATTCCA 57.779 32.000 2.27 0.00 0.00 3.53
306 307 7.661968 TGTAAAATGAAATCCGTGAATTCCAA 58.338 30.769 2.27 0.00 0.00 3.53
307 308 7.596995 TGTAAAATGAAATCCGTGAATTCCAAC 59.403 33.333 2.27 0.00 0.00 3.77
308 309 4.718940 ATGAAATCCGTGAATTCCAACC 57.281 40.909 2.27 0.00 0.00 3.77
309 310 2.823154 TGAAATCCGTGAATTCCAACCC 59.177 45.455 2.27 0.00 0.00 4.11
310 311 2.595750 AATCCGTGAATTCCAACCCA 57.404 45.000 2.27 0.00 0.00 4.51
311 312 2.595750 ATCCGTGAATTCCAACCCAA 57.404 45.000 2.27 0.00 0.00 4.12
312 313 2.595750 TCCGTGAATTCCAACCCAAT 57.404 45.000 2.27 0.00 0.00 3.16
313 314 2.166829 TCCGTGAATTCCAACCCAATG 58.833 47.619 2.27 0.00 0.00 2.82
314 315 1.204467 CCGTGAATTCCAACCCAATGG 59.796 52.381 2.27 0.00 42.12 3.16
315 316 1.404047 CGTGAATTCCAACCCAATGGC 60.404 52.381 2.27 0.00 40.46 4.40
316 317 1.622811 GTGAATTCCAACCCAATGGCA 59.377 47.619 2.27 0.00 40.46 4.92
317 318 2.236893 GTGAATTCCAACCCAATGGCAT 59.763 45.455 2.27 0.00 40.46 4.40
318 319 2.236644 TGAATTCCAACCCAATGGCATG 59.763 45.455 0.00 0.00 40.46 4.06
319 320 2.250921 ATTCCAACCCAATGGCATGA 57.749 45.000 0.00 0.00 40.46 3.07
320 321 1.559368 TTCCAACCCAATGGCATGAG 58.441 50.000 0.00 0.00 40.46 2.90
321 322 0.971959 TCCAACCCAATGGCATGAGC 60.972 55.000 0.00 0.00 40.46 4.26
332 333 3.117589 GCATGAGCCAAACAAGCAG 57.882 52.632 0.00 0.00 33.18 4.24
333 334 0.316204 GCATGAGCCAAACAAGCAGT 59.684 50.000 0.00 0.00 33.18 4.40
334 335 1.269936 GCATGAGCCAAACAAGCAGTT 60.270 47.619 0.00 0.00 37.03 3.16
335 336 2.030007 GCATGAGCCAAACAAGCAGTTA 60.030 45.455 0.00 0.00 35.20 2.24
336 337 3.829948 CATGAGCCAAACAAGCAGTTAG 58.170 45.455 0.00 0.00 40.26 2.34
337 338 1.608590 TGAGCCAAACAAGCAGTTAGC 59.391 47.619 8.17 8.17 40.26 3.09
346 347 4.354155 GCAGTTAGCCACGTGTCA 57.646 55.556 15.65 0.00 37.23 3.58
347 348 1.860078 GCAGTTAGCCACGTGTCAC 59.140 57.895 15.65 3.47 37.23 3.67
348 349 0.878523 GCAGTTAGCCACGTGTCACA 60.879 55.000 15.65 0.00 37.23 3.58
349 350 1.795768 CAGTTAGCCACGTGTCACAT 58.204 50.000 15.65 0.00 0.00 3.21
350 351 1.460743 CAGTTAGCCACGTGTCACATG 59.539 52.381 15.65 0.00 0.00 3.21
351 352 0.796312 GTTAGCCACGTGTCACATGG 59.204 55.000 13.81 13.81 36.51 3.66
352 353 0.394938 TTAGCCACGTGTCACATGGT 59.605 50.000 18.76 8.76 35.79 3.55
353 354 0.037697 TAGCCACGTGTCACATGGTC 60.038 55.000 18.76 11.30 35.79 4.02
354 355 2.325082 GCCACGTGTCACATGGTCC 61.325 63.158 18.76 0.10 35.79 4.46
355 356 1.070615 CCACGTGTCACATGGTCCA 59.929 57.895 15.65 0.00 0.00 4.02
356 357 0.950555 CCACGTGTCACATGGTCCAG 60.951 60.000 15.65 0.00 0.00 3.86
357 358 0.950555 CACGTGTCACATGGTCCAGG 60.951 60.000 7.58 0.92 0.00 4.45
358 359 1.371183 CGTGTCACATGGTCCAGGT 59.629 57.895 2.56 2.56 0.00 4.00
359 360 0.606096 CGTGTCACATGGTCCAGGTA 59.394 55.000 9.23 0.00 0.00 3.08
360 361 1.671850 CGTGTCACATGGTCCAGGTAC 60.672 57.143 9.23 8.74 0.00 3.34
361 362 0.606096 TGTCACATGGTCCAGGTACG 59.394 55.000 9.23 0.00 0.00 3.67
362 363 0.892755 GTCACATGGTCCAGGTACGA 59.107 55.000 9.23 0.35 0.00 3.43
363 364 0.892755 TCACATGGTCCAGGTACGAC 59.107 55.000 9.23 0.00 0.00 4.34
364 365 0.606096 CACATGGTCCAGGTACGACA 59.394 55.000 9.23 0.00 31.55 4.35
365 366 0.895530 ACATGGTCCAGGTACGACAG 59.104 55.000 7.57 0.00 31.55 3.51
366 367 0.895530 CATGGTCCAGGTACGACAGT 59.104 55.000 0.00 0.00 31.55 3.55
367 368 2.097036 CATGGTCCAGGTACGACAGTA 58.903 52.381 0.00 0.00 31.55 2.74
376 377 3.465990 TACGACAGTACTCCCTCCG 57.534 57.895 0.00 0.00 0.00 4.63
377 378 0.107508 TACGACAGTACTCCCTCCGG 60.108 60.000 0.00 0.00 0.00 5.14
378 379 1.378250 CGACAGTACTCCCTCCGGT 60.378 63.158 0.00 0.00 0.00 5.28
379 380 1.375098 CGACAGTACTCCCTCCGGTC 61.375 65.000 0.00 0.00 0.00 4.79
380 381 0.034283 GACAGTACTCCCTCCGGTCT 60.034 60.000 0.00 0.00 0.00 3.85
381 382 0.408700 ACAGTACTCCCTCCGGTCTT 59.591 55.000 0.00 0.00 0.00 3.01
382 383 1.203149 ACAGTACTCCCTCCGGTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
383 384 1.900486 CAGTACTCCCTCCGGTCTTTT 59.100 52.381 0.00 0.00 0.00 2.27
384 385 2.302157 CAGTACTCCCTCCGGTCTTTTT 59.698 50.000 0.00 0.00 0.00 1.94
409 410 9.594478 TTTAGTTCGCATATAAGATTTGTCTGA 57.406 29.630 0.00 0.00 0.00 3.27
410 411 9.594478 TTAGTTCGCATATAAGATTTGTCTGAA 57.406 29.630 0.00 0.00 0.00 3.02
411 412 8.136057 AGTTCGCATATAAGATTTGTCTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
412 413 7.766278 AGTTCGCATATAAGATTTGTCTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
413 414 7.700322 TCGCATATAAGATTTGTCTGAAGTC 57.300 36.000 0.00 0.00 0.00 3.01
414 415 7.264947 TCGCATATAAGATTTGTCTGAAGTCA 58.735 34.615 0.00 0.00 0.00 3.41
415 416 7.763985 TCGCATATAAGATTTGTCTGAAGTCAA 59.236 33.333 0.00 0.00 0.00 3.18
416 417 8.060679 CGCATATAAGATTTGTCTGAAGTCAAG 58.939 37.037 0.00 0.00 0.00 3.02
417 418 7.854916 GCATATAAGATTTGTCTGAAGTCAAGC 59.145 37.037 0.00 0.00 0.00 4.01
418 419 6.749923 ATAAGATTTGTCTGAAGTCAAGCC 57.250 37.500 0.00 0.00 0.00 4.35
419 420 4.363991 AGATTTGTCTGAAGTCAAGCCT 57.636 40.909 0.00 0.00 0.00 4.58
420 421 4.322567 AGATTTGTCTGAAGTCAAGCCTC 58.677 43.478 0.00 0.00 0.00 4.70
421 422 2.154854 TTGTCTGAAGTCAAGCCTCG 57.845 50.000 0.00 0.00 0.00 4.63
422 423 1.040646 TGTCTGAAGTCAAGCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
423 424 2.235891 TGTCTGAAGTCAAGCCTCGTA 58.764 47.619 0.00 0.00 0.00 3.43
424 425 2.626266 TGTCTGAAGTCAAGCCTCGTAA 59.374 45.455 0.00 0.00 0.00 3.18
425 426 3.069016 TGTCTGAAGTCAAGCCTCGTAAA 59.931 43.478 0.00 0.00 0.00 2.01
426 427 4.056050 GTCTGAAGTCAAGCCTCGTAAAA 58.944 43.478 0.00 0.00 0.00 1.52
427 428 4.691216 GTCTGAAGTCAAGCCTCGTAAAAT 59.309 41.667 0.00 0.00 0.00 1.82
428 429 5.179555 GTCTGAAGTCAAGCCTCGTAAAATT 59.820 40.000 0.00 0.00 0.00 1.82
429 430 5.763204 TCTGAAGTCAAGCCTCGTAAAATTT 59.237 36.000 0.00 0.00 0.00 1.82
430 431 5.757886 TGAAGTCAAGCCTCGTAAAATTTG 58.242 37.500 0.00 0.00 0.00 2.32
431 432 5.529430 TGAAGTCAAGCCTCGTAAAATTTGA 59.471 36.000 0.00 0.00 0.00 2.69
432 433 5.358298 AGTCAAGCCTCGTAAAATTTGAC 57.642 39.130 6.98 6.98 42.72 3.18
433 434 4.215613 AGTCAAGCCTCGTAAAATTTGACC 59.784 41.667 10.51 0.00 43.15 4.02
434 435 4.023536 GTCAAGCCTCGTAAAATTTGACCA 60.024 41.667 0.00 0.00 38.79 4.02
435 436 4.580995 TCAAGCCTCGTAAAATTTGACCAA 59.419 37.500 0.00 0.00 0.00 3.67
436 437 4.499037 AGCCTCGTAAAATTTGACCAAC 57.501 40.909 0.00 0.00 0.00 3.77
437 438 4.142038 AGCCTCGTAAAATTTGACCAACT 58.858 39.130 0.00 0.00 0.00 3.16
438 439 4.583073 AGCCTCGTAAAATTTGACCAACTT 59.417 37.500 0.00 0.00 0.00 2.66
439 440 5.068591 AGCCTCGTAAAATTTGACCAACTTT 59.931 36.000 0.00 0.00 0.00 2.66
440 441 6.263617 AGCCTCGTAAAATTTGACCAACTTTA 59.736 34.615 0.00 0.00 0.00 1.85
441 442 6.361481 GCCTCGTAAAATTTGACCAACTTTAC 59.639 38.462 0.00 12.29 31.76 2.01
442 443 7.419204 CCTCGTAAAATTTGACCAACTTTACA 58.581 34.615 17.60 9.90 33.14 2.41
443 444 7.589954 CCTCGTAAAATTTGACCAACTTTACAG 59.410 37.037 17.60 14.65 33.14 2.74
444 445 8.211116 TCGTAAAATTTGACCAACTTTACAGA 57.789 30.769 17.60 14.38 33.14 3.41
445 446 8.675504 TCGTAAAATTTGACCAACTTTACAGAA 58.324 29.630 17.60 7.56 33.14 3.02
446 447 9.291664 CGTAAAATTTGACCAACTTTACAGAAA 57.708 29.630 17.60 0.00 33.14 2.52
490 491 9.836076 AATGTGAAATCAATATCAATAGATGCG 57.164 29.630 0.00 0.00 35.67 4.73
491 492 7.300320 TGTGAAATCAATATCAATAGATGCGC 58.700 34.615 0.00 0.00 35.67 6.09
492 493 7.041235 TGTGAAATCAATATCAATAGATGCGCA 60.041 33.333 14.96 14.96 35.67 6.09
493 494 7.804600 GTGAAATCAATATCAATAGATGCGCAA 59.195 33.333 17.11 0.00 35.67 4.85
494 495 8.517056 TGAAATCAATATCAATAGATGCGCAAT 58.483 29.630 17.11 9.28 35.67 3.56
495 496 9.992910 GAAATCAATATCAATAGATGCGCAATA 57.007 29.630 17.11 11.58 35.67 1.90
497 498 9.778993 AATCAATATCAATAGATGCGCAATAAC 57.221 29.630 17.11 6.67 35.67 1.89
498 499 8.552083 TCAATATCAATAGATGCGCAATAACT 57.448 30.769 17.11 14.15 35.67 2.24
499 500 9.002600 TCAATATCAATAGATGCGCAATAACTT 57.997 29.630 17.11 0.00 35.67 2.66
509 510 8.931385 AGATGCGCAATAACTTAAATTTTCAT 57.069 26.923 17.11 0.00 0.00 2.57
514 515 9.356929 GCGCAATAACTTAAATTTTCATATTGC 57.643 29.630 23.57 23.57 45.14 3.56
631 632 2.423446 AGACCGGAGAGAGTAAGTCC 57.577 55.000 9.46 0.00 0.00 3.85
702 703 4.097361 GTTCCCGTGCTCTCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
727 728 6.437162 CCCTCTAATCACTTTCCATTCCAAAA 59.563 38.462 0.00 0.00 0.00 2.44
735 736 4.754618 ACTTTCCATTCCAAAATTTTCCGC 59.245 37.500 0.00 0.00 0.00 5.54
751 752 2.294078 CGCCTCCCTCCAAACTCCT 61.294 63.158 0.00 0.00 0.00 3.69
764 766 2.109799 CTCCTGATCCGCGCCAAT 59.890 61.111 0.00 0.00 0.00 3.16
776 778 0.035534 GCGCCAATCCCCCAAAATTT 60.036 50.000 0.00 0.00 0.00 1.82
854 856 1.852965 CTAACCCTCCCCACCAATCAT 59.147 52.381 0.00 0.00 0.00 2.45
918 921 1.614051 GGCACACCATCTCCACATTCA 60.614 52.381 0.00 0.00 35.26 2.57
1229 1257 0.529833 TCCGCGTTTCGTTACCCATA 59.470 50.000 4.92 0.00 36.19 2.74
1241 1269 3.555168 CGTTACCCATAGGCATTCTCCTC 60.555 52.174 0.00 0.00 37.66 3.71
1272 1371 3.123804 CTCACGGGTATTCGATTCTTGG 58.876 50.000 0.00 0.00 0.00 3.61
1308 1407 4.845580 CTGGAGCTCGCCGGCAAT 62.846 66.667 28.98 8.51 34.17 3.56
1511 1610 1.183549 GCGTCCCAGGAGTTCTAGAA 58.816 55.000 0.00 0.00 0.00 2.10
1527 1626 3.764434 TCTAGAACCTCGCAGATCAAACT 59.236 43.478 0.00 0.00 33.89 2.66
1530 1629 3.764434 AGAACCTCGCAGATCAAACTAGA 59.236 43.478 0.00 0.00 33.89 2.43
1532 1631 3.851098 ACCTCGCAGATCAAACTAGAAC 58.149 45.455 0.00 0.00 33.89 3.01
1533 1632 3.511934 ACCTCGCAGATCAAACTAGAACT 59.488 43.478 0.00 0.00 33.89 3.01
1535 1634 5.185249 ACCTCGCAGATCAAACTAGAACTAA 59.815 40.000 0.00 0.00 33.89 2.24
1536 1635 6.127310 ACCTCGCAGATCAAACTAGAACTAAT 60.127 38.462 0.00 0.00 33.89 1.73
1537 1636 6.419413 CCTCGCAGATCAAACTAGAACTAATC 59.581 42.308 0.00 0.00 33.89 1.75
1538 1637 7.101652 TCGCAGATCAAACTAGAACTAATCT 57.898 36.000 0.00 0.00 42.48 2.40
1540 1639 8.683615 TCGCAGATCAAACTAGAACTAATCTAA 58.316 33.333 0.00 0.00 40.12 2.10
1541 1640 8.747666 CGCAGATCAAACTAGAACTAATCTAAC 58.252 37.037 0.00 0.00 40.12 2.34
1549 1648 9.978044 AAACTAGAACTAATCTAACAACGTTCT 57.022 29.630 0.00 0.00 40.12 3.01
1552 1651 6.164176 AGAACTAATCTAACAACGTTCTGGG 58.836 40.000 0.00 0.00 39.45 4.45
1553 1652 5.479124 ACTAATCTAACAACGTTCTGGGT 57.521 39.130 0.00 0.00 0.00 4.51
1574 1778 7.410174 TGGGTCAATCTGGTTCTTGTTATTAT 58.590 34.615 0.00 0.00 0.00 1.28
1643 1847 3.613737 GCGGAATGAATGGTGAAAACATG 59.386 43.478 0.00 0.00 0.00 3.21
1656 1860 8.023050 TGGTGAAAACATGTTTTTACAGTTTG 57.977 30.769 38.15 0.52 45.25 2.93
1667 1871 6.972328 TGTTTTTACAGTTTGAGTCTGAATGC 59.028 34.615 0.00 0.00 36.81 3.56
1668 1872 6.942532 TTTTACAGTTTGAGTCTGAATGCT 57.057 33.333 0.00 0.00 36.81 3.79
1696 1918 5.724328 CAGAGAGTATTTTCTGGCAGTACA 58.276 41.667 15.27 0.00 37.70 2.90
1697 1919 6.166279 CAGAGAGTATTTTCTGGCAGTACAA 58.834 40.000 15.27 6.33 37.70 2.41
1698 1920 6.820656 CAGAGAGTATTTTCTGGCAGTACAAT 59.179 38.462 15.27 12.87 37.70 2.71
1699 1921 6.820656 AGAGAGTATTTTCTGGCAGTACAATG 59.179 38.462 15.27 0.00 0.00 2.82
1700 1922 6.476378 AGAGTATTTTCTGGCAGTACAATGT 58.524 36.000 15.27 0.00 0.00 2.71
1701 1923 7.620880 AGAGTATTTTCTGGCAGTACAATGTA 58.379 34.615 15.27 0.00 0.00 2.29
1704 1926 6.743575 ATTTTCTGGCAGTACAATGTACTC 57.256 37.500 21.91 15.98 0.00 2.59
1706 1928 2.500098 TCTGGCAGTACAATGTACTCCC 59.500 50.000 23.15 23.15 0.00 4.30
1707 1929 2.501723 CTGGCAGTACAATGTACTCCCT 59.498 50.000 27.95 6.19 0.00 4.20
1708 1930 2.500098 TGGCAGTACAATGTACTCCCTC 59.500 50.000 27.95 15.99 0.00 4.30
1709 1931 2.766828 GGCAGTACAATGTACTCCCTCT 59.233 50.000 22.76 0.98 0.00 3.69
1715 2066 3.248024 ACAATGTACTCCCTCTGTTCCA 58.752 45.455 0.00 0.00 0.00 3.53
1723 2074 5.167303 ACTCCCTCTGTTCCAAATTACTC 57.833 43.478 0.00 0.00 0.00 2.59
1726 2077 4.041198 TCCCTCTGTTCCAAATTACTCGTT 59.959 41.667 0.00 0.00 0.00 3.85
1727 2078 4.154195 CCCTCTGTTCCAAATTACTCGTTG 59.846 45.833 0.00 0.00 0.00 4.10
1728 2079 4.755123 CCTCTGTTCCAAATTACTCGTTGT 59.245 41.667 0.00 0.00 0.00 3.32
1729 2080 5.334105 CCTCTGTTCCAAATTACTCGTTGTG 60.334 44.000 0.00 0.00 0.00 3.33
1730 2081 4.513692 TCTGTTCCAAATTACTCGTTGTGG 59.486 41.667 0.00 0.00 0.00 4.17
1731 2082 4.200874 TGTTCCAAATTACTCGTTGTGGT 58.799 39.130 0.00 0.00 0.00 4.16
1733 2084 5.125739 TGTTCCAAATTACTCGTTGTGGTTT 59.874 36.000 0.00 0.00 0.00 3.27
1735 2086 6.939132 TCCAAATTACTCGTTGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
1737 2088 6.543100 TCCAAATTACTCGTTGTGGTTTTAGT 59.457 34.615 0.00 0.00 0.00 2.24
1738 2089 7.714377 TCCAAATTACTCGTTGTGGTTTTAGTA 59.286 33.333 0.00 0.00 0.00 1.82
1739 2090 8.344098 CCAAATTACTCGTTGTGGTTTTAGTAA 58.656 33.333 0.00 0.00 34.84 2.24
1743 2094 9.887406 ATTACTCGTTGTGGTTTTAGTAATTTG 57.113 29.630 0.00 0.00 37.01 2.32
1744 2095 7.556733 ACTCGTTGTGGTTTTAGTAATTTGA 57.443 32.000 0.00 0.00 0.00 2.69
1746 2097 8.626526 ACTCGTTGTGGTTTTAGTAATTTGAAT 58.373 29.630 0.00 0.00 0.00 2.57
1747 2098 9.458374 CTCGTTGTGGTTTTAGTAATTTGAATT 57.542 29.630 0.00 0.00 0.00 2.17
1769 2144 8.582433 AATTAAAACCACAACGAGTAATTTGG 57.418 30.769 0.00 0.00 0.00 3.28
1773 2148 3.249080 ACCACAACGAGTAATTTGGAACG 59.751 43.478 0.00 0.00 0.00 3.95
1774 2149 3.364565 CCACAACGAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 0.00 4.44
1776 2151 3.744426 ACAACGAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
1873 2249 7.895975 TTAGCAATATAGTGAGCACATCATC 57.104 36.000 3.96 0.00 40.92 2.92
1880 2256 1.662629 GTGAGCACATCATCCTGTTCG 59.337 52.381 0.00 0.00 40.92 3.95
1900 2276 4.849518 TCGTCCCATGATACCATTTTCAA 58.150 39.130 0.00 0.00 0.00 2.69
1959 2335 3.179443 TGCAAGGTAGCTATGTACTGC 57.821 47.619 7.01 7.01 34.99 4.40
1967 2343 6.807789 AGGTAGCTATGTACTGCTTTTCTAC 58.192 40.000 12.26 5.93 40.35 2.59
1968 2344 5.984323 GGTAGCTATGTACTGCTTTTCTACC 59.016 44.000 12.26 10.02 40.35 3.18
1973 2349 6.018669 GCTATGTACTGCTTTTCTACCATGAC 60.019 42.308 0.00 0.00 0.00 3.06
2004 2380 2.492088 GGTTGTTGGATTAGTTCTGGGC 59.508 50.000 0.00 0.00 0.00 5.36
2180 4336 1.639298 GGCGCTGGACTGTTGTGATC 61.639 60.000 7.64 0.00 0.00 2.92
2244 4400 3.490761 CGAATGCCCAAGTTTGTTCTTGT 60.491 43.478 5.86 0.00 42.01 3.16
2264 4420 4.763073 TGTTGGCAAATGTGATTGTTCAA 58.237 34.783 0.00 0.00 32.48 2.69
2265 4421 5.366460 TGTTGGCAAATGTGATTGTTCAAT 58.634 33.333 0.00 0.00 32.48 2.57
2280 4436 4.808558 TGTTCAATTCAGCTATTTGGTGC 58.191 39.130 0.00 0.00 43.32 5.01
2293 4449 0.825840 TTGGTGCTTACCCCAACAGC 60.826 55.000 0.00 0.00 35.84 4.40
2317 4473 2.635714 TCATGATGATGTGTGAGTGCC 58.364 47.619 0.00 0.00 0.00 5.01
2322 4478 2.363306 TGATGTGTGAGTGCCCTTTT 57.637 45.000 0.00 0.00 0.00 2.27
2340 4496 7.014230 TGCCCTTTTGTAGATTGAATATAAGGC 59.986 37.037 0.00 0.00 0.00 4.35
2367 4523 6.739112 AGAATCCTTTTTAGCACTGAAACAC 58.261 36.000 0.00 0.00 0.00 3.32
2372 4528 2.340210 TTAGCACTGAAACACCTGCA 57.660 45.000 0.00 0.00 31.71 4.41
2396 4552 3.264947 TCTTCAGTCATGGCAAGATTCG 58.735 45.455 0.00 0.00 0.00 3.34
2400 4556 2.353889 CAGTCATGGCAAGATTCGGAAG 59.646 50.000 0.00 0.00 0.00 3.46
2421 4577 4.171754 AGTGCGACGGTACTATTTCTTTC 58.828 43.478 0.00 0.00 37.34 2.62
2493 4650 5.336150 TGCAAAACTTCCTGAATGTTTCA 57.664 34.783 0.00 0.00 38.17 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.637986 TCCTTGTCAAAAATGGGCATATTATAC 58.362 33.333 0.00 0.00 0.00 1.47
2 3 8.774546 TCCTTGTCAAAAATGGGCATATTATA 57.225 30.769 0.00 0.00 0.00 0.98
3 4 7.202029 CCTCCTTGTCAAAAATGGGCATATTAT 60.202 37.037 0.00 0.00 0.00 1.28
5 6 5.104817 CCTCCTTGTCAAAAATGGGCATATT 60.105 40.000 0.00 0.00 0.00 1.28
6 7 4.406649 CCTCCTTGTCAAAAATGGGCATAT 59.593 41.667 0.00 0.00 0.00 1.78
7 8 3.768757 CCTCCTTGTCAAAAATGGGCATA 59.231 43.478 0.00 0.00 0.00 3.14
8 9 2.568509 CCTCCTTGTCAAAAATGGGCAT 59.431 45.455 0.00 0.00 0.00 4.40
9 10 1.969923 CCTCCTTGTCAAAAATGGGCA 59.030 47.619 0.00 0.00 0.00 5.36
10 11 1.970640 ACCTCCTTGTCAAAAATGGGC 59.029 47.619 0.00 0.00 0.00 5.36
11 12 2.965147 ACACCTCCTTGTCAAAAATGGG 59.035 45.455 0.00 0.00 0.00 4.00
12 13 4.670896 AACACCTCCTTGTCAAAAATGG 57.329 40.909 0.00 0.00 0.00 3.16
13 14 6.675244 GCAAAAACACCTCCTTGTCAAAAATG 60.675 38.462 0.00 0.00 0.00 2.32
14 15 5.353956 GCAAAAACACCTCCTTGTCAAAAAT 59.646 36.000 0.00 0.00 0.00 1.82
15 16 4.693095 GCAAAAACACCTCCTTGTCAAAAA 59.307 37.500 0.00 0.00 0.00 1.94
16 17 4.249661 GCAAAAACACCTCCTTGTCAAAA 58.750 39.130 0.00 0.00 0.00 2.44
17 18 3.674682 CGCAAAAACACCTCCTTGTCAAA 60.675 43.478 0.00 0.00 0.00 2.69
18 19 2.159310 CGCAAAAACACCTCCTTGTCAA 60.159 45.455 0.00 0.00 0.00 3.18
19 20 1.403679 CGCAAAAACACCTCCTTGTCA 59.596 47.619 0.00 0.00 0.00 3.58
20 21 1.269051 CCGCAAAAACACCTCCTTGTC 60.269 52.381 0.00 0.00 0.00 3.18
21 22 0.744281 CCGCAAAAACACCTCCTTGT 59.256 50.000 0.00 0.00 0.00 3.16
22 23 0.597377 GCCGCAAAAACACCTCCTTG 60.597 55.000 0.00 0.00 0.00 3.61
23 24 1.739667 GCCGCAAAAACACCTCCTT 59.260 52.632 0.00 0.00 0.00 3.36
24 25 2.200337 GGCCGCAAAAACACCTCCT 61.200 57.895 0.00 0.00 0.00 3.69
25 26 2.022240 TTGGCCGCAAAAACACCTCC 62.022 55.000 0.00 0.00 0.00 4.30
26 27 0.874175 GTTGGCCGCAAAAACACCTC 60.874 55.000 0.00 0.00 0.00 3.85
27 28 1.142965 GTTGGCCGCAAAAACACCT 59.857 52.632 0.00 0.00 0.00 4.00
28 29 0.461163 AAGTTGGCCGCAAAAACACC 60.461 50.000 0.00 0.00 0.00 4.16
29 30 1.061857 CAAAGTTGGCCGCAAAAACAC 59.938 47.619 0.00 0.00 0.00 3.32
30 31 1.338200 ACAAAGTTGGCCGCAAAAACA 60.338 42.857 0.00 0.00 0.00 2.83
31 32 1.061857 CACAAAGTTGGCCGCAAAAAC 59.938 47.619 0.00 0.00 0.00 2.43
32 33 1.338200 ACACAAAGTTGGCCGCAAAAA 60.338 42.857 0.00 0.00 0.00 1.94
33 34 0.247736 ACACAAAGTTGGCCGCAAAA 59.752 45.000 0.00 0.00 0.00 2.44
34 35 0.179124 GACACAAAGTTGGCCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
35 36 1.034838 AGACACAAAGTTGGCCGCAA 61.035 50.000 0.00 0.00 0.00 4.85
36 37 1.034838 AAGACACAAAGTTGGCCGCA 61.035 50.000 0.00 0.00 0.00 5.69
37 38 0.317854 GAAGACACAAAGTTGGCCGC 60.318 55.000 0.00 0.00 0.00 6.53
38 39 0.310854 GGAAGACACAAAGTTGGCCG 59.689 55.000 0.00 0.00 0.00 6.13
39 40 1.692411 AGGAAGACACAAAGTTGGCC 58.308 50.000 0.00 0.00 0.00 5.36
40 41 3.883489 ACTAAGGAAGACACAAAGTTGGC 59.117 43.478 0.00 0.00 0.00 4.52
41 42 4.275936 CCACTAAGGAAGACACAAAGTTGG 59.724 45.833 0.00 0.00 41.22 3.77
42 43 4.881850 ACCACTAAGGAAGACACAAAGTTG 59.118 41.667 0.00 0.00 41.22 3.16
43 44 4.881850 CACCACTAAGGAAGACACAAAGTT 59.118 41.667 0.00 0.00 41.22 2.66
44 45 4.163458 TCACCACTAAGGAAGACACAAAGT 59.837 41.667 0.00 0.00 41.22 2.66
45 46 4.703897 TCACCACTAAGGAAGACACAAAG 58.296 43.478 0.00 0.00 41.22 2.77
46 47 4.407621 TCTCACCACTAAGGAAGACACAAA 59.592 41.667 0.00 0.00 41.22 2.83
47 48 3.964688 TCTCACCACTAAGGAAGACACAA 59.035 43.478 0.00 0.00 41.22 3.33
48 49 3.572642 TCTCACCACTAAGGAAGACACA 58.427 45.455 0.00 0.00 41.22 3.72
49 50 3.056465 CCTCTCACCACTAAGGAAGACAC 60.056 52.174 0.00 0.00 41.22 3.67
50 51 3.165875 CCTCTCACCACTAAGGAAGACA 58.834 50.000 0.00 0.00 41.22 3.41
51 52 2.498078 CCCTCTCACCACTAAGGAAGAC 59.502 54.545 0.00 0.00 41.22 3.01
52 53 2.382305 TCCCTCTCACCACTAAGGAAGA 59.618 50.000 0.00 0.00 41.22 2.87
53 54 2.498078 GTCCCTCTCACCACTAAGGAAG 59.502 54.545 0.00 0.00 41.22 3.46
54 55 2.537143 GTCCCTCTCACCACTAAGGAA 58.463 52.381 0.00 0.00 41.22 3.36
55 56 1.616187 CGTCCCTCTCACCACTAAGGA 60.616 57.143 0.00 0.00 41.22 3.36
56 57 0.818296 CGTCCCTCTCACCACTAAGG 59.182 60.000 0.00 0.00 45.67 2.69
57 58 1.473278 GACGTCCCTCTCACCACTAAG 59.527 57.143 3.51 0.00 0.00 2.18
58 59 1.542492 GACGTCCCTCTCACCACTAA 58.458 55.000 3.51 0.00 0.00 2.24
59 60 0.675837 CGACGTCCCTCTCACCACTA 60.676 60.000 10.58 0.00 0.00 2.74
60 61 1.972223 CGACGTCCCTCTCACCACT 60.972 63.158 10.58 0.00 0.00 4.00
61 62 1.924320 CTCGACGTCCCTCTCACCAC 61.924 65.000 10.58 0.00 0.00 4.16
62 63 1.674651 CTCGACGTCCCTCTCACCA 60.675 63.158 10.58 0.00 0.00 4.17
63 64 1.370587 CTCTCGACGTCCCTCTCACC 61.371 65.000 10.58 0.00 0.00 4.02
64 65 1.984321 GCTCTCGACGTCCCTCTCAC 61.984 65.000 10.58 0.00 0.00 3.51
65 66 1.745864 GCTCTCGACGTCCCTCTCA 60.746 63.158 10.58 0.00 0.00 3.27
66 67 2.815298 CGCTCTCGACGTCCCTCTC 61.815 68.421 10.58 0.00 38.10 3.20
67 68 2.820479 CGCTCTCGACGTCCCTCT 60.820 66.667 10.58 0.00 38.10 3.69
68 69 4.539881 GCGCTCTCGACGTCCCTC 62.540 72.222 10.58 0.00 38.10 4.30
96 97 4.170062 CACATGCCTCCGCGCTTG 62.170 66.667 5.56 0.00 39.23 4.01
102 103 2.741985 TTCACGCACATGCCTCCG 60.742 61.111 0.00 0.00 37.91 4.63
103 104 1.672356 AGTTCACGCACATGCCTCC 60.672 57.895 0.00 0.00 37.91 4.30
104 105 0.950555 TCAGTTCACGCACATGCCTC 60.951 55.000 0.00 0.00 37.91 4.70
105 106 0.321919 ATCAGTTCACGCACATGCCT 60.322 50.000 0.00 0.00 37.91 4.75
106 107 0.523072 AATCAGTTCACGCACATGCC 59.477 50.000 0.00 0.00 37.91 4.40
107 108 1.069022 ACAATCAGTTCACGCACATGC 60.069 47.619 0.00 0.00 37.78 4.06
108 109 2.223845 TGACAATCAGTTCACGCACATG 59.776 45.455 0.00 0.00 0.00 3.21
109 110 2.493035 TGACAATCAGTTCACGCACAT 58.507 42.857 0.00 0.00 0.00 3.21
110 111 1.946745 TGACAATCAGTTCACGCACA 58.053 45.000 0.00 0.00 0.00 4.57
111 112 3.228749 CATTGACAATCAGTTCACGCAC 58.771 45.455 0.00 0.00 0.00 5.34
112 113 2.877786 ACATTGACAATCAGTTCACGCA 59.122 40.909 0.00 0.00 0.00 5.24
113 114 3.228749 CACATTGACAATCAGTTCACGC 58.771 45.455 0.00 0.00 0.00 5.34
114 115 3.228749 GCACATTGACAATCAGTTCACG 58.771 45.455 0.00 0.00 0.00 4.35
115 116 3.228749 CGCACATTGACAATCAGTTCAC 58.771 45.455 0.00 0.00 0.00 3.18
116 117 2.350676 GCGCACATTGACAATCAGTTCA 60.351 45.455 0.30 0.00 0.00 3.18
117 118 2.245096 GCGCACATTGACAATCAGTTC 58.755 47.619 0.30 0.00 0.00 3.01
118 119 1.608109 TGCGCACATTGACAATCAGTT 59.392 42.857 5.66 0.00 0.00 3.16
119 120 1.237533 TGCGCACATTGACAATCAGT 58.762 45.000 5.66 0.00 0.00 3.41
120 121 2.095617 TCTTGCGCACATTGACAATCAG 60.096 45.455 11.12 0.00 0.00 2.90
121 122 1.878734 TCTTGCGCACATTGACAATCA 59.121 42.857 11.12 0.00 0.00 2.57
122 123 2.512885 CTCTTGCGCACATTGACAATC 58.487 47.619 11.12 0.00 0.00 2.67
123 124 1.200716 CCTCTTGCGCACATTGACAAT 59.799 47.619 11.12 0.00 0.00 2.71
124 125 0.592637 CCTCTTGCGCACATTGACAA 59.407 50.000 11.12 0.00 0.00 3.18
125 126 0.534877 ACCTCTTGCGCACATTGACA 60.535 50.000 11.12 0.00 0.00 3.58
126 127 1.394917 CTACCTCTTGCGCACATTGAC 59.605 52.381 11.12 0.00 0.00 3.18
127 128 1.275010 TCTACCTCTTGCGCACATTGA 59.725 47.619 11.12 5.45 0.00 2.57
128 129 1.662629 CTCTACCTCTTGCGCACATTG 59.337 52.381 11.12 1.41 0.00 2.82
129 130 1.406069 CCTCTACCTCTTGCGCACATT 60.406 52.381 11.12 0.00 0.00 2.71
130 131 0.176680 CCTCTACCTCTTGCGCACAT 59.823 55.000 11.12 0.00 0.00 3.21
131 132 0.898326 TCCTCTACCTCTTGCGCACA 60.898 55.000 11.12 0.00 0.00 4.57
132 133 0.246635 TTCCTCTACCTCTTGCGCAC 59.753 55.000 11.12 0.00 0.00 5.34
133 134 0.973632 TTTCCTCTACCTCTTGCGCA 59.026 50.000 5.66 5.66 0.00 6.09
134 135 2.003301 CTTTTCCTCTACCTCTTGCGC 58.997 52.381 0.00 0.00 0.00 6.09
135 136 2.622436 CCTTTTCCTCTACCTCTTGCG 58.378 52.381 0.00 0.00 0.00 4.85
136 137 2.941860 GCCCTTTTCCTCTACCTCTTGC 60.942 54.545 0.00 0.00 0.00 4.01
137 138 2.678190 CGCCCTTTTCCTCTACCTCTTG 60.678 54.545 0.00 0.00 0.00 3.02
138 139 1.555533 CGCCCTTTTCCTCTACCTCTT 59.444 52.381 0.00 0.00 0.00 2.85
139 140 1.196012 CGCCCTTTTCCTCTACCTCT 58.804 55.000 0.00 0.00 0.00 3.69
140 141 0.178301 CCGCCCTTTTCCTCTACCTC 59.822 60.000 0.00 0.00 0.00 3.85
141 142 0.546988 ACCGCCCTTTTCCTCTACCT 60.547 55.000 0.00 0.00 0.00 3.08
142 143 0.392595 CACCGCCCTTTTCCTCTACC 60.393 60.000 0.00 0.00 0.00 3.18
143 144 0.392595 CCACCGCCCTTTTCCTCTAC 60.393 60.000 0.00 0.00 0.00 2.59
144 145 1.559065 CCCACCGCCCTTTTCCTCTA 61.559 60.000 0.00 0.00 0.00 2.43
145 146 2.757077 CCACCGCCCTTTTCCTCT 59.243 61.111 0.00 0.00 0.00 3.69
146 147 2.361230 CCCACCGCCCTTTTCCTC 60.361 66.667 0.00 0.00 0.00 3.71
147 148 3.979497 CCCCACCGCCCTTTTCCT 61.979 66.667 0.00 0.00 0.00 3.36
149 150 4.986708 TGCCCCACCGCCCTTTTC 62.987 66.667 0.00 0.00 0.00 2.29
150 151 4.548513 TTGCCCCACCGCCCTTTT 62.549 61.111 0.00 0.00 0.00 2.27
151 152 4.548513 TTTGCCCCACCGCCCTTT 62.549 61.111 0.00 0.00 0.00 3.11
155 156 2.318519 AAAAAGTTTGCCCCACCGCC 62.319 55.000 0.00 0.00 0.00 6.13
156 157 1.145156 AAAAAGTTTGCCCCACCGC 59.855 52.632 0.00 0.00 0.00 5.68
157 158 0.531753 CCAAAAAGTTTGCCCCACCG 60.532 55.000 0.00 0.00 0.00 4.94
158 159 0.817634 GCCAAAAAGTTTGCCCCACC 60.818 55.000 0.00 0.00 0.00 4.61
159 160 0.817634 GGCCAAAAAGTTTGCCCCAC 60.818 55.000 0.00 0.00 39.21 4.61
160 161 1.274703 TGGCCAAAAAGTTTGCCCCA 61.275 50.000 0.61 3.88 43.48 4.96
161 162 0.106967 TTGGCCAAAAAGTTTGCCCC 60.107 50.000 17.98 1.60 43.48 5.80
162 163 1.756430 TTTGGCCAAAAAGTTTGCCC 58.244 45.000 28.57 3.58 43.48 5.36
163 164 3.003585 CAGATTTGGCCAAAAAGTTTGCC 59.996 43.478 33.43 14.75 44.21 4.52
164 165 3.876320 TCAGATTTGGCCAAAAAGTTTGC 59.124 39.130 33.43 16.25 33.56 3.68
165 166 4.025813 CGTCAGATTTGGCCAAAAAGTTTG 60.026 41.667 33.43 21.67 33.56 2.93
166 167 4.119136 CGTCAGATTTGGCCAAAAAGTTT 58.881 39.130 33.43 17.79 33.56 2.66
167 168 3.492482 CCGTCAGATTTGGCCAAAAAGTT 60.492 43.478 33.43 18.19 33.56 2.66
168 169 2.035832 CCGTCAGATTTGGCCAAAAAGT 59.964 45.455 33.43 18.58 33.56 2.66
169 170 2.676076 CCGTCAGATTTGGCCAAAAAG 58.324 47.619 33.43 24.13 33.56 2.27
170 171 1.270041 GCCGTCAGATTTGGCCAAAAA 60.270 47.619 33.43 14.10 43.06 1.94
171 172 0.316841 GCCGTCAGATTTGGCCAAAA 59.683 50.000 33.43 15.53 43.06 2.44
172 173 1.963679 GCCGTCAGATTTGGCCAAA 59.036 52.632 32.12 32.12 43.06 3.28
173 174 3.680156 GCCGTCAGATTTGGCCAA 58.320 55.556 16.05 16.05 43.06 4.52
177 178 2.398554 CGTGGGCCGTCAGATTTGG 61.399 63.158 0.00 0.00 0.00 3.28
178 179 1.361668 CTCGTGGGCCGTCAGATTTG 61.362 60.000 0.00 0.00 37.94 2.32
179 180 1.079127 CTCGTGGGCCGTCAGATTT 60.079 57.895 0.00 0.00 37.94 2.17
180 181 1.982395 TCTCGTGGGCCGTCAGATT 60.982 57.895 0.00 0.00 37.94 2.40
181 182 2.362503 TCTCGTGGGCCGTCAGAT 60.363 61.111 0.00 0.00 37.94 2.90
182 183 3.371063 GTCTCGTGGGCCGTCAGA 61.371 66.667 0.00 0.00 37.94 3.27
183 184 3.343788 GAGTCTCGTGGGCCGTCAG 62.344 68.421 0.00 0.00 37.94 3.51
184 185 3.371063 GAGTCTCGTGGGCCGTCA 61.371 66.667 0.00 0.00 37.94 4.35
185 186 4.477975 CGAGTCTCGTGGGCCGTC 62.478 72.222 14.27 0.00 37.94 4.79
188 189 4.148825 ATGCGAGTCTCGTGGGCC 62.149 66.667 22.61 6.96 42.81 5.80
189 190 2.583593 GATGCGAGTCTCGTGGGC 60.584 66.667 22.61 7.26 42.81 5.36
190 191 1.226802 CAGATGCGAGTCTCGTGGG 60.227 63.158 22.61 5.77 42.81 4.61
191 192 1.875813 GCAGATGCGAGTCTCGTGG 60.876 63.158 22.61 9.58 42.81 4.94
192 193 1.875813 GGCAGATGCGAGTCTCGTG 60.876 63.158 22.61 14.02 42.81 4.35
193 194 2.492090 GGCAGATGCGAGTCTCGT 59.508 61.111 22.61 4.53 42.81 4.18
194 195 2.279120 GGGCAGATGCGAGTCTCG 60.279 66.667 18.08 18.08 43.89 4.04
195 196 2.279120 CGGGCAGATGCGAGTCTC 60.279 66.667 0.00 0.00 43.26 3.36
196 197 3.842923 CCGGGCAGATGCGAGTCT 61.843 66.667 0.00 0.00 43.26 3.24
197 198 3.157217 ATCCGGGCAGATGCGAGTC 62.157 63.158 0.00 0.00 43.26 3.36
198 199 3.157217 GATCCGGGCAGATGCGAGT 62.157 63.158 0.00 0.00 43.26 4.18
199 200 2.356793 GATCCGGGCAGATGCGAG 60.357 66.667 0.00 0.00 43.26 5.03
200 201 4.284860 CGATCCGGGCAGATGCGA 62.285 66.667 0.00 0.00 43.26 5.10
217 218 0.512952 GCACATATTGATCGGCGTCC 59.487 55.000 6.85 0.00 0.00 4.79
218 219 0.512952 GGCACATATTGATCGGCGTC 59.487 55.000 6.85 4.58 0.00 5.19
219 220 0.106708 AGGCACATATTGATCGGCGT 59.893 50.000 6.85 0.00 0.00 5.68
220 221 2.078849 TAGGCACATATTGATCGGCG 57.921 50.000 0.00 0.00 0.00 6.46
221 222 3.426695 GCAATAGGCACATATTGATCGGC 60.427 47.826 16.77 0.14 43.06 5.54
222 223 4.346734 GCAATAGGCACATATTGATCGG 57.653 45.455 16.77 0.00 43.06 4.18
233 234 4.259474 GCGCAAGGATAGCAATAGGCAC 62.259 54.545 0.30 0.00 41.88 5.01
234 235 2.147374 GCGCAAGGATAGCAATAGGCA 61.147 52.381 0.30 0.00 41.88 4.75
235 236 0.519077 GCGCAAGGATAGCAATAGGC 59.481 55.000 0.30 0.00 40.11 3.93
236 237 0.792640 CGCGCAAGGATAGCAATAGG 59.207 55.000 8.75 0.00 38.28 2.57
237 238 1.457303 GTCGCGCAAGGATAGCAATAG 59.543 52.381 8.75 0.00 38.28 1.73
238 239 1.202475 TGTCGCGCAAGGATAGCAATA 60.202 47.619 8.75 0.00 38.28 1.90
239 240 0.461870 TGTCGCGCAAGGATAGCAAT 60.462 50.000 8.75 0.00 38.28 3.56
240 241 1.079474 TGTCGCGCAAGGATAGCAA 60.079 52.632 8.75 0.00 38.28 3.91
241 242 1.519234 CTGTCGCGCAAGGATAGCA 60.519 57.895 8.75 0.00 38.28 3.49
242 243 2.875786 GCTGTCGCGCAAGGATAGC 61.876 63.158 14.56 14.56 41.51 2.97
243 244 2.240500 GGCTGTCGCGCAAGGATAG 61.241 63.158 8.75 5.66 36.88 2.08
244 245 2.202878 GGCTGTCGCGCAAGGATA 60.203 61.111 8.75 0.00 36.88 2.59
245 246 3.899981 TTGGCTGTCGCGCAAGGAT 62.900 57.895 8.75 0.00 36.88 3.24
246 247 4.617520 TTGGCTGTCGCGCAAGGA 62.618 61.111 8.75 0.00 36.88 3.36
247 248 3.659092 TTTGGCTGTCGCGCAAGG 61.659 61.111 8.75 0.00 36.88 3.61
248 249 2.427410 GTTTGGCTGTCGCGCAAG 60.427 61.111 8.75 1.69 36.88 4.01
249 250 2.660553 CTTGTTTGGCTGTCGCGCAA 62.661 55.000 8.75 0.00 36.88 4.85
250 251 3.179869 CTTGTTTGGCTGTCGCGCA 62.180 57.895 8.75 1.43 36.88 6.09
251 252 2.427410 CTTGTTTGGCTGTCGCGC 60.427 61.111 0.00 0.00 36.88 6.86
252 253 0.929824 CAACTTGTTTGGCTGTCGCG 60.930 55.000 0.00 0.00 36.88 5.87
253 254 2.872028 CAACTTGTTTGGCTGTCGC 58.128 52.632 0.00 0.00 0.00 5.19
261 262 3.132925 CAATTCCAGCCCAACTTGTTTG 58.867 45.455 0.00 0.00 34.63 2.93
262 263 2.771372 ACAATTCCAGCCCAACTTGTTT 59.229 40.909 0.00 0.00 0.00 2.83
263 264 2.397597 ACAATTCCAGCCCAACTTGTT 58.602 42.857 0.00 0.00 0.00 2.83
264 265 2.086610 ACAATTCCAGCCCAACTTGT 57.913 45.000 0.00 0.00 0.00 3.16
265 266 4.599047 TTTACAATTCCAGCCCAACTTG 57.401 40.909 0.00 0.00 0.00 3.16
266 267 5.306678 TCATTTTACAATTCCAGCCCAACTT 59.693 36.000 0.00 0.00 0.00 2.66
267 268 4.837860 TCATTTTACAATTCCAGCCCAACT 59.162 37.500 0.00 0.00 0.00 3.16
268 269 5.146010 TCATTTTACAATTCCAGCCCAAC 57.854 39.130 0.00 0.00 0.00 3.77
269 270 5.815233 TTCATTTTACAATTCCAGCCCAA 57.185 34.783 0.00 0.00 0.00 4.12
270 271 5.815233 TTTCATTTTACAATTCCAGCCCA 57.185 34.783 0.00 0.00 0.00 5.36
271 272 5.817296 GGATTTCATTTTACAATTCCAGCCC 59.183 40.000 0.00 0.00 0.00 5.19
272 273 5.519927 CGGATTTCATTTTACAATTCCAGCC 59.480 40.000 0.00 0.00 0.00 4.85
273 274 6.034898 CACGGATTTCATTTTACAATTCCAGC 59.965 38.462 0.00 0.00 0.00 4.85
274 275 7.312154 TCACGGATTTCATTTTACAATTCCAG 58.688 34.615 0.00 0.00 0.00 3.86
275 276 7.220741 TCACGGATTTCATTTTACAATTCCA 57.779 32.000 0.00 0.00 0.00 3.53
276 277 8.702163 ATTCACGGATTTCATTTTACAATTCC 57.298 30.769 0.00 0.00 0.00 3.01
278 279 9.150348 GGAATTCACGGATTTCATTTTACAATT 57.850 29.630 7.93 0.00 0.00 2.32
279 280 8.310382 TGGAATTCACGGATTTCATTTTACAAT 58.690 29.630 7.93 0.00 0.00 2.71
280 281 7.661968 TGGAATTCACGGATTTCATTTTACAA 58.338 30.769 7.93 0.00 0.00 2.41
281 282 7.220741 TGGAATTCACGGATTTCATTTTACA 57.779 32.000 7.93 0.00 0.00 2.41
282 283 7.062956 GGTTGGAATTCACGGATTTCATTTTAC 59.937 37.037 7.93 0.00 0.00 2.01
283 284 7.093992 GGTTGGAATTCACGGATTTCATTTTA 58.906 34.615 7.93 0.00 0.00 1.52
284 285 5.931724 GGTTGGAATTCACGGATTTCATTTT 59.068 36.000 7.93 0.00 0.00 1.82
285 286 5.478407 GGTTGGAATTCACGGATTTCATTT 58.522 37.500 7.93 0.00 0.00 2.32
286 287 4.081697 GGGTTGGAATTCACGGATTTCATT 60.082 41.667 7.93 0.00 0.00 2.57
287 288 3.447229 GGGTTGGAATTCACGGATTTCAT 59.553 43.478 7.93 0.00 0.00 2.57
288 289 2.823154 GGGTTGGAATTCACGGATTTCA 59.177 45.455 7.93 0.00 0.00 2.69
289 290 2.823154 TGGGTTGGAATTCACGGATTTC 59.177 45.455 7.93 0.00 0.00 2.17
290 291 2.883026 TGGGTTGGAATTCACGGATTT 58.117 42.857 7.93 0.00 0.00 2.17
291 292 2.595750 TGGGTTGGAATTCACGGATT 57.404 45.000 7.93 0.00 0.00 3.01
292 293 2.595750 TTGGGTTGGAATTCACGGAT 57.404 45.000 7.93 0.00 0.00 4.18
293 294 2.166829 CATTGGGTTGGAATTCACGGA 58.833 47.619 7.93 0.00 0.00 4.69
294 295 1.204467 CCATTGGGTTGGAATTCACGG 59.796 52.381 7.93 0.00 39.25 4.94
295 296 1.404047 GCCATTGGGTTGGAATTCACG 60.404 52.381 7.93 0.00 39.25 4.35
296 297 1.622811 TGCCATTGGGTTGGAATTCAC 59.377 47.619 7.93 0.00 39.25 3.18
297 298 2.021262 TGCCATTGGGTTGGAATTCA 57.979 45.000 7.93 0.00 39.25 2.57
298 299 2.500910 TCATGCCATTGGGTTGGAATTC 59.499 45.455 4.53 0.00 39.25 2.17
299 300 2.502538 CTCATGCCATTGGGTTGGAATT 59.497 45.455 4.53 0.00 39.25 2.17
300 301 2.112998 CTCATGCCATTGGGTTGGAAT 58.887 47.619 4.53 0.00 39.25 3.01
301 302 1.559368 CTCATGCCATTGGGTTGGAA 58.441 50.000 4.53 0.00 39.25 3.53
302 303 0.971959 GCTCATGCCATTGGGTTGGA 60.972 55.000 4.53 0.00 39.25 3.53
303 304 1.518774 GCTCATGCCATTGGGTTGG 59.481 57.895 4.53 0.00 39.94 3.77
314 315 0.316204 ACTGCTTGTTTGGCTCATGC 59.684 50.000 0.00 0.00 36.79 4.06
315 316 2.806608 AACTGCTTGTTTGGCTCATG 57.193 45.000 0.00 0.00 34.84 3.07
316 317 2.229784 GCTAACTGCTTGTTTGGCTCAT 59.770 45.455 1.42 0.00 39.89 2.90
317 318 1.608590 GCTAACTGCTTGTTTGGCTCA 59.391 47.619 1.42 0.00 39.89 4.26
318 319 1.068264 GGCTAACTGCTTGTTTGGCTC 60.068 52.381 17.34 7.82 46.96 4.70
319 320 0.961753 GGCTAACTGCTTGTTTGGCT 59.038 50.000 17.34 0.00 46.96 4.75
320 321 3.496898 GGCTAACTGCTTGTTTGGC 57.503 52.632 12.53 12.53 45.45 4.52
321 322 1.334960 CGTGGCTAACTGCTTGTTTGG 60.335 52.381 1.42 0.00 42.39 3.28
322 323 1.333619 ACGTGGCTAACTGCTTGTTTG 59.666 47.619 0.00 1.64 42.39 2.93
323 324 1.333619 CACGTGGCTAACTGCTTGTTT 59.666 47.619 7.95 0.00 42.39 2.83
324 325 0.944386 CACGTGGCTAACTGCTTGTT 59.056 50.000 7.95 1.74 42.39 2.83
325 326 0.179056 ACACGTGGCTAACTGCTTGT 60.179 50.000 21.57 0.00 42.39 3.16
326 327 0.512952 GACACGTGGCTAACTGCTTG 59.487 55.000 21.57 0.00 42.39 4.01
327 328 0.105964 TGACACGTGGCTAACTGCTT 59.894 50.000 24.38 0.00 42.39 3.91
328 329 0.600255 GTGACACGTGGCTAACTGCT 60.600 55.000 24.38 0.00 42.39 4.24
329 330 0.878523 TGTGACACGTGGCTAACTGC 60.879 55.000 24.38 6.35 41.94 4.40
330 331 1.460743 CATGTGACACGTGGCTAACTG 59.539 52.381 24.38 10.92 31.65 3.16
331 332 1.795768 CATGTGACACGTGGCTAACT 58.204 50.000 24.38 1.41 31.65 2.24
338 339 0.950555 CCTGGACCATGTGACACGTG 60.951 60.000 19.11 19.11 34.96 4.49
339 340 1.371183 CCTGGACCATGTGACACGT 59.629 57.895 0.00 0.00 0.00 4.49
340 341 0.606096 TACCTGGACCATGTGACACG 59.394 55.000 12.28 0.00 0.00 4.49
341 342 1.671850 CGTACCTGGACCATGTGACAC 60.672 57.143 12.28 0.00 0.00 3.67
342 343 0.606096 CGTACCTGGACCATGTGACA 59.394 55.000 12.28 0.00 0.00 3.58
343 344 0.892755 TCGTACCTGGACCATGTGAC 59.107 55.000 12.28 6.18 0.00 3.67
344 345 0.892755 GTCGTACCTGGACCATGTGA 59.107 55.000 12.28 0.00 0.00 3.58
345 346 0.606096 TGTCGTACCTGGACCATGTG 59.394 55.000 12.28 0.00 33.46 3.21
346 347 0.895530 CTGTCGTACCTGGACCATGT 59.104 55.000 7.61 7.61 33.46 3.21
347 348 0.895530 ACTGTCGTACCTGGACCATG 59.104 55.000 0.00 0.00 33.46 3.66
348 349 2.097825 GTACTGTCGTACCTGGACCAT 58.902 52.381 0.00 0.00 40.07 3.55
349 350 1.074405 AGTACTGTCGTACCTGGACCA 59.926 52.381 0.00 0.00 45.68 4.02
350 351 1.742268 GAGTACTGTCGTACCTGGACC 59.258 57.143 0.00 0.00 45.68 4.46
351 352 1.742268 GGAGTACTGTCGTACCTGGAC 59.258 57.143 0.00 0.00 45.68 4.02
352 353 1.340405 GGGAGTACTGTCGTACCTGGA 60.340 57.143 0.00 0.00 45.68 3.86
353 354 1.101331 GGGAGTACTGTCGTACCTGG 58.899 60.000 0.00 0.00 45.68 4.45
354 355 2.015587 GAGGGAGTACTGTCGTACCTG 58.984 57.143 0.00 0.00 45.68 4.00
355 356 1.064832 GGAGGGAGTACTGTCGTACCT 60.065 57.143 0.00 0.00 45.68 3.08
356 357 1.387539 GGAGGGAGTACTGTCGTACC 58.612 60.000 0.00 0.00 45.68 3.34
357 358 1.012841 CGGAGGGAGTACTGTCGTAC 58.987 60.000 0.00 0.00 45.04 3.67
358 359 3.465990 CGGAGGGAGTACTGTCGTA 57.534 57.895 0.00 0.00 0.00 3.43
359 360 4.315588 CGGAGGGAGTACTGTCGT 57.684 61.111 0.00 0.00 0.00 4.34
383 384 9.594478 TCAGACAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 30.42 1.85
384 385 9.594478 TTCAGACAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 30.42 2.24
385 386 9.249457 CTTCAGACAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 30.42 2.24
386 387 7.766278 ACTTCAGACAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 30.42 3.01
387 388 7.910304 ACTTCAGACAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 30.42 3.95
388 389 7.763985 TGACTTCAGACAAATCTTATATGCGAA 59.236 33.333 0.00 0.00 30.42 4.70
389 390 7.264947 TGACTTCAGACAAATCTTATATGCGA 58.735 34.615 0.00 0.00 30.42 5.10
390 391 7.468922 TGACTTCAGACAAATCTTATATGCG 57.531 36.000 0.00 0.00 30.42 4.73
391 392 7.854916 GCTTGACTTCAGACAAATCTTATATGC 59.145 37.037 0.00 0.00 30.42 3.14
392 393 8.341173 GGCTTGACTTCAGACAAATCTTATATG 58.659 37.037 0.00 0.00 30.42 1.78
393 394 8.270744 AGGCTTGACTTCAGACAAATCTTATAT 58.729 33.333 0.00 0.00 30.42 0.86
394 395 7.624549 AGGCTTGACTTCAGACAAATCTTATA 58.375 34.615 0.00 0.00 30.42 0.98
395 396 6.479884 AGGCTTGACTTCAGACAAATCTTAT 58.520 36.000 0.00 0.00 30.42 1.73
396 397 5.869579 AGGCTTGACTTCAGACAAATCTTA 58.130 37.500 0.00 0.00 30.42 2.10
397 398 4.723309 AGGCTTGACTTCAGACAAATCTT 58.277 39.130 0.00 0.00 30.42 2.40
398 399 4.322567 GAGGCTTGACTTCAGACAAATCT 58.677 43.478 0.00 0.00 34.57 2.40
399 400 3.124297 CGAGGCTTGACTTCAGACAAATC 59.876 47.826 0.00 0.00 30.22 2.17
400 401 3.070018 CGAGGCTTGACTTCAGACAAAT 58.930 45.455 0.00 0.00 30.22 2.32
401 402 2.158957 ACGAGGCTTGACTTCAGACAAA 60.159 45.455 9.20 0.00 30.22 2.83
402 403 1.412710 ACGAGGCTTGACTTCAGACAA 59.587 47.619 9.20 0.00 0.00 3.18
403 404 1.040646 ACGAGGCTTGACTTCAGACA 58.959 50.000 9.20 0.00 0.00 3.41
404 405 3.299340 TTACGAGGCTTGACTTCAGAC 57.701 47.619 9.20 0.00 0.00 3.51
405 406 4.330944 TTTTACGAGGCTTGACTTCAGA 57.669 40.909 9.20 0.00 0.00 3.27
406 407 5.613358 AATTTTACGAGGCTTGACTTCAG 57.387 39.130 9.20 0.00 0.00 3.02
407 408 5.529430 TCAAATTTTACGAGGCTTGACTTCA 59.471 36.000 9.20 0.00 0.00 3.02
408 409 5.851703 GTCAAATTTTACGAGGCTTGACTTC 59.148 40.000 9.20 0.00 39.54 3.01
409 410 5.278315 GGTCAAATTTTACGAGGCTTGACTT 60.278 40.000 9.20 0.00 41.40 3.01
410 411 4.215613 GGTCAAATTTTACGAGGCTTGACT 59.784 41.667 9.20 0.00 41.40 3.41
411 412 4.023536 TGGTCAAATTTTACGAGGCTTGAC 60.024 41.667 9.20 5.19 41.09 3.18
412 413 4.138290 TGGTCAAATTTTACGAGGCTTGA 58.862 39.130 9.20 0.00 0.00 3.02
413 414 4.497473 TGGTCAAATTTTACGAGGCTTG 57.503 40.909 0.00 0.00 0.00 4.01
414 415 4.583073 AGTTGGTCAAATTTTACGAGGCTT 59.417 37.500 0.00 0.00 0.00 4.35
415 416 4.142038 AGTTGGTCAAATTTTACGAGGCT 58.858 39.130 0.00 0.00 0.00 4.58
416 417 4.499037 AGTTGGTCAAATTTTACGAGGC 57.501 40.909 0.00 0.00 0.00 4.70
417 418 7.419204 TGTAAAGTTGGTCAAATTTTACGAGG 58.581 34.615 13.08 0.00 39.07 4.63
418 419 8.339714 TCTGTAAAGTTGGTCAAATTTTACGAG 58.660 33.333 13.08 14.10 39.07 4.18
419 420 8.211116 TCTGTAAAGTTGGTCAAATTTTACGA 57.789 30.769 13.08 13.54 39.07 3.43
420 421 8.844441 TTCTGTAAAGTTGGTCAAATTTTACG 57.156 30.769 13.08 12.17 39.07 3.18
464 465 9.836076 CGCATCTATTGATATTGATTTCACATT 57.164 29.630 0.00 0.00 0.00 2.71
465 466 7.966753 GCGCATCTATTGATATTGATTTCACAT 59.033 33.333 0.30 0.00 0.00 3.21
466 467 7.041235 TGCGCATCTATTGATATTGATTTCACA 60.041 33.333 5.66 0.00 0.00 3.58
467 468 7.300320 TGCGCATCTATTGATATTGATTTCAC 58.700 34.615 5.66 0.00 0.00 3.18
468 469 7.437793 TGCGCATCTATTGATATTGATTTCA 57.562 32.000 5.66 0.00 0.00 2.69
469 470 8.906636 ATTGCGCATCTATTGATATTGATTTC 57.093 30.769 12.75 0.00 0.00 2.17
471 472 9.778993 GTTATTGCGCATCTATTGATATTGATT 57.221 29.630 12.75 0.00 0.00 2.57
472 473 9.170734 AGTTATTGCGCATCTATTGATATTGAT 57.829 29.630 12.75 0.00 0.00 2.57
473 474 8.552083 AGTTATTGCGCATCTATTGATATTGA 57.448 30.769 12.75 0.00 0.00 2.57
484 485 8.931385 ATGAAAATTTAAGTTATTGCGCATCT 57.069 26.923 12.75 4.26 0.00 2.90
488 489 9.356929 GCAATATGAAAATTTAAGTTATTGCGC 57.643 29.630 20.35 0.00 39.97 6.09
608 609 4.021280 GGACTTACTCTCTCCGGTCTTTTT 60.021 45.833 0.00 0.00 0.00 1.94
609 610 3.510753 GGACTTACTCTCTCCGGTCTTTT 59.489 47.826 0.00 0.00 0.00 2.27
610 611 3.090790 GGACTTACTCTCTCCGGTCTTT 58.909 50.000 0.00 0.00 0.00 2.52
611 612 2.041350 TGGACTTACTCTCTCCGGTCTT 59.959 50.000 0.00 0.00 0.00 3.01
612 613 1.634459 TGGACTTACTCTCTCCGGTCT 59.366 52.381 0.00 0.00 0.00 3.85
613 614 1.744522 GTGGACTTACTCTCTCCGGTC 59.255 57.143 0.00 0.00 0.00 4.79
614 615 1.075050 TGTGGACTTACTCTCTCCGGT 59.925 52.381 0.00 0.00 0.00 5.28
615 616 1.835494 TGTGGACTTACTCTCTCCGG 58.165 55.000 0.00 0.00 0.00 5.14
616 617 2.416162 GCTTGTGGACTTACTCTCTCCG 60.416 54.545 0.00 0.00 0.00 4.63
617 618 2.093921 GGCTTGTGGACTTACTCTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
618 619 2.563179 TGGCTTGTGGACTTACTCTCTC 59.437 50.000 0.00 0.00 0.00 3.20
619 620 2.609747 TGGCTTGTGGACTTACTCTCT 58.390 47.619 0.00 0.00 0.00 3.10
620 621 3.618690 ATGGCTTGTGGACTTACTCTC 57.381 47.619 0.00 0.00 0.00 3.20
621 622 3.327757 TCAATGGCTTGTGGACTTACTCT 59.672 43.478 0.00 0.00 33.87 3.24
622 623 3.437049 GTCAATGGCTTGTGGACTTACTC 59.563 47.826 0.00 0.00 33.87 2.59
631 632 0.457166 CCATGCGTCAATGGCTTGTG 60.457 55.000 1.73 0.00 40.74 3.33
702 703 5.116084 TGGAATGGAAAGTGATTAGAGGG 57.884 43.478 0.00 0.00 0.00 4.30
727 728 0.407918 TTTGGAGGGAGGCGGAAAAT 59.592 50.000 0.00 0.00 0.00 1.82
735 736 1.488393 GATCAGGAGTTTGGAGGGAGG 59.512 57.143 0.00 0.00 0.00 4.30
751 752 4.562425 GGGGATTGGCGCGGATCA 62.562 66.667 19.19 2.23 0.00 2.92
764 766 0.415830 GGAGGGGAAATTTTGGGGGA 59.584 55.000 0.00 0.00 0.00 4.81
776 778 2.299727 GATGGAGGACGAGGAGGGGA 62.300 65.000 0.00 0.00 0.00 4.81
854 856 2.798445 TAGAAGGAGGAGGCGGTGCA 62.798 60.000 0.00 0.00 0.00 4.57
918 921 2.093447 GTCGGACAGATTGTTGAGGGAT 60.093 50.000 2.62 0.00 0.00 3.85
1152 1174 1.748122 GACGGCGGAGAGGTAGACA 60.748 63.158 13.24 0.00 0.00 3.41
1229 1257 1.836802 GGACAGAAGAGGAGAATGCCT 59.163 52.381 0.00 0.00 42.17 4.75
1272 1371 4.068599 CCAGGACCTGAAGAGAAGAAAAC 58.931 47.826 23.77 0.00 32.44 2.43
1511 1610 3.511934 AGTTCTAGTTTGATCTGCGAGGT 59.488 43.478 0.00 0.00 0.00 3.85
1527 1626 7.039504 ACCCAGAACGTTGTTAGATTAGTTCTA 60.040 37.037 5.00 0.00 44.15 2.10
1530 1629 5.861727 ACCCAGAACGTTGTTAGATTAGTT 58.138 37.500 5.00 0.00 0.00 2.24
1532 1631 5.475719 TGACCCAGAACGTTGTTAGATTAG 58.524 41.667 5.00 0.00 0.00 1.73
1533 1632 5.471556 TGACCCAGAACGTTGTTAGATTA 57.528 39.130 5.00 0.00 0.00 1.75
1535 1634 4.345859 TTGACCCAGAACGTTGTTAGAT 57.654 40.909 5.00 0.00 0.00 1.98
1536 1635 3.823281 TTGACCCAGAACGTTGTTAGA 57.177 42.857 5.00 0.00 0.00 2.10
1537 1636 4.152402 CAGATTGACCCAGAACGTTGTTAG 59.848 45.833 5.00 0.00 0.00 2.34
1538 1637 4.062293 CAGATTGACCCAGAACGTTGTTA 58.938 43.478 5.00 0.00 0.00 2.41
1540 1639 2.494059 CAGATTGACCCAGAACGTTGT 58.506 47.619 5.00 0.00 0.00 3.32
1541 1640 1.806542 CCAGATTGACCCAGAACGTTG 59.193 52.381 5.00 0.00 0.00 4.10
1543 1642 1.056660 ACCAGATTGACCCAGAACGT 58.943 50.000 0.00 0.00 0.00 3.99
1544 1643 2.076863 GAACCAGATTGACCCAGAACG 58.923 52.381 0.00 0.00 0.00 3.95
1545 1644 3.425162 AGAACCAGATTGACCCAGAAC 57.575 47.619 0.00 0.00 0.00 3.01
1548 1647 3.146104 ACAAGAACCAGATTGACCCAG 57.854 47.619 0.00 0.00 0.00 4.45
1549 1648 3.593442 AACAAGAACCAGATTGACCCA 57.407 42.857 0.00 0.00 0.00 4.51
1574 1778 4.739195 TCACGTTGACATATCACGATGAA 58.261 39.130 4.50 0.00 33.38 2.57
1579 1783 5.012655 TGTTTTCACGTTGACATATCACG 57.987 39.130 0.00 0.00 33.38 4.35
1612 1816 4.067896 ACCATTCATTCCGCATCATAGAC 58.932 43.478 0.00 0.00 0.00 2.59
1614 1818 4.067192 TCACCATTCATTCCGCATCATAG 58.933 43.478 0.00 0.00 0.00 2.23
1619 1823 3.257873 TGTTTTCACCATTCATTCCGCAT 59.742 39.130 0.00 0.00 0.00 4.73
1643 1847 7.166473 CAGCATTCAGACTCAAACTGTAAAAAC 59.834 37.037 0.00 0.00 36.81 2.43
1694 1916 3.248024 TGGAACAGAGGGAGTACATTGT 58.752 45.455 0.00 0.00 0.00 2.71
1695 1917 3.981071 TGGAACAGAGGGAGTACATTG 57.019 47.619 0.00 0.00 0.00 2.82
1696 1918 4.993705 TTTGGAACAGAGGGAGTACATT 57.006 40.909 0.00 0.00 42.39 2.71
1697 1919 5.520748 AATTTGGAACAGAGGGAGTACAT 57.479 39.130 0.00 0.00 42.39 2.29
1698 1920 4.993705 AATTTGGAACAGAGGGAGTACA 57.006 40.909 0.00 0.00 42.39 2.90
1699 1921 6.051179 AGTAATTTGGAACAGAGGGAGTAC 57.949 41.667 0.00 0.00 42.39 2.73
1700 1922 5.105473 CGAGTAATTTGGAACAGAGGGAGTA 60.105 44.000 0.00 0.00 42.39 2.59
1701 1923 4.322801 CGAGTAATTTGGAACAGAGGGAGT 60.323 45.833 0.00 0.00 42.39 3.85
1704 1926 3.939066 ACGAGTAATTTGGAACAGAGGG 58.061 45.455 0.00 0.00 42.39 4.30
1706 1928 5.334105 CCACAACGAGTAATTTGGAACAGAG 60.334 44.000 0.00 0.00 42.39 3.35
1707 1929 4.513692 CCACAACGAGTAATTTGGAACAGA 59.486 41.667 0.00 0.00 42.39 3.41
1708 1930 4.274950 ACCACAACGAGTAATTTGGAACAG 59.725 41.667 0.00 0.00 42.39 3.16
1709 1931 4.200874 ACCACAACGAGTAATTTGGAACA 58.799 39.130 0.00 0.00 0.00 3.18
1735 2086 9.458374 CTCGTTGTGGTTTTAATTCAAATTACT 57.542 29.630 0.00 0.00 31.03 2.24
1738 2089 9.804758 TTACTCGTTGTGGTTTTAATTCAAATT 57.195 25.926 0.00 0.00 0.00 1.82
1739 2090 9.974980 ATTACTCGTTGTGGTTTTAATTCAAAT 57.025 25.926 0.00 0.00 0.00 2.32
1741 2092 9.804758 AAATTACTCGTTGTGGTTTTAATTCAA 57.195 25.926 0.00 0.00 0.00 2.69
1743 2094 8.696175 CCAAATTACTCGTTGTGGTTTTAATTC 58.304 33.333 0.00 0.00 0.00 2.17
1744 2095 8.414778 TCCAAATTACTCGTTGTGGTTTTAATT 58.585 29.630 0.00 0.00 0.00 1.40
1746 2097 7.330900 TCCAAATTACTCGTTGTGGTTTTAA 57.669 32.000 0.00 0.00 0.00 1.52
1747 2098 6.939132 TCCAAATTACTCGTTGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
1748 2099 5.838531 TCCAAATTACTCGTTGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
1749 2100 5.584442 GTTCCAAATTACTCGTTGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
1750 2101 4.260866 CGTTCCAAATTACTCGTTGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
1752 2103 3.364565 CCGTTCCAAATTACTCGTTGTGG 60.365 47.826 0.00 0.00 0.00 4.17
1753 2104 3.495377 TCCGTTCCAAATTACTCGTTGTG 59.505 43.478 0.00 0.00 0.00 3.33
1754 2105 3.731089 TCCGTTCCAAATTACTCGTTGT 58.269 40.909 0.00 0.00 0.00 3.32
1755 2106 3.124636 CCTCCGTTCCAAATTACTCGTTG 59.875 47.826 0.00 0.00 0.00 4.10
1769 2144 0.456628 GACTGCTACTCCCTCCGTTC 59.543 60.000 0.00 0.00 0.00 3.95
1773 2148 0.176910 GCTTGACTGCTACTCCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
1774 2149 0.179124 CGCTTGACTGCTACTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
1776 2151 0.815734 TACGCTTGACTGCTACTCCC 59.184 55.000 0.00 0.00 0.00 4.30
1873 2249 1.484653 TGGTATCATGGGACGAACAGG 59.515 52.381 0.00 0.00 0.00 4.00
1880 2256 6.332630 CACTTTGAAAATGGTATCATGGGAC 58.667 40.000 0.00 0.00 33.18 4.46
1900 2276 4.947388 TGCTAGTTGAAACAACTTCCACTT 59.053 37.500 19.55 0.26 39.89 3.16
1959 2335 5.551760 AAAGCATCGTCATGGTAGAAAAG 57.448 39.130 0.00 0.00 39.96 2.27
1967 2343 3.009723 ACAACCTAAAGCATCGTCATGG 58.990 45.455 0.00 0.00 0.00 3.66
1968 2344 4.406069 CAACAACCTAAAGCATCGTCATG 58.594 43.478 0.00 0.00 0.00 3.07
1973 2349 4.701956 AATCCAACAACCTAAAGCATCG 57.298 40.909 0.00 0.00 0.00 3.84
2004 2380 5.338559 GTCGATACACCAAACAAAACATTCG 59.661 40.000 0.00 0.00 0.00 3.34
2180 4336 2.369394 GGCCAGAAAGTAATCCACAGG 58.631 52.381 0.00 0.00 0.00 4.00
2244 4400 6.053650 TGAATTGAACAATCACATTTGCCAA 58.946 32.000 0.45 0.00 34.61 4.52
2280 4436 3.763360 TCATGAATTGCTGTTGGGGTAAG 59.237 43.478 0.00 0.00 0.00 2.34
2293 4449 5.034797 GCACTCACACATCATCATGAATTG 58.965 41.667 0.00 0.16 33.72 2.32
2340 4496 8.567948 TGTTTCAGTGCTAAAAAGGATTCTAAG 58.432 33.333 0.00 0.00 0.00 2.18
2367 4523 2.812591 GCCATGACTGAAGATATGCAGG 59.187 50.000 0.00 0.00 36.47 4.85
2372 4528 5.699915 CGAATCTTGCCATGACTGAAGATAT 59.300 40.000 0.00 0.00 34.72 1.63
2396 4552 2.573941 AATAGTACCGTCGCACTTCC 57.426 50.000 3.45 0.00 0.00 3.46
2400 4556 3.922240 TGAAAGAAATAGTACCGTCGCAC 59.078 43.478 0.00 0.00 0.00 5.34
2421 4577 4.978580 GGAAGAAGCTTACAAACTTGCTTG 59.021 41.667 0.00 0.00 44.47 4.01
2470 4627 5.728471 TGAAACATTCAGGAAGTTTTGCAA 58.272 33.333 0.00 0.00 35.77 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.