Multiple sequence alignment - TraesCS5A01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G098100 chr5A 100.000 2339 0 0 1 2339 139508939 139506601 0.000000e+00 4320
1 TraesCS5A01G098100 chr5A 96.628 1127 37 1 407 1532 480183952 480182826 0.000000e+00 1869
2 TraesCS5A01G098100 chr5A 96.277 1128 39 3 407 1532 702078656 702079782 0.000000e+00 1847
3 TraesCS5A01G098100 chr5A 97.893 807 17 0 1533 2339 139492680 139491874 0.000000e+00 1397
4 TraesCS5A01G098100 chr5A 97.531 810 17 1 1533 2339 270121918 270122727 0.000000e+00 1382
5 TraesCS5A01G098100 chr5A 96.959 822 20 4 1519 2337 69679298 69678479 0.000000e+00 1375
6 TraesCS5A01G098100 chr5A 99.083 109 1 0 297 405 480183885 480183993 1.830000e-46 196
7 TraesCS5A01G098100 chr5A 82.222 225 30 9 4 221 523455285 523455064 3.970000e-43 185
8 TraesCS5A01G098100 chr5A 97.248 109 3 0 297 405 702078723 702078615 3.970000e-43 185
9 TraesCS5A01G098100 chr4A 97.072 1127 31 2 407 1531 2973661 2974787 0.000000e+00 1897
10 TraesCS5A01G098100 chr4A 96.640 1131 33 2 407 1532 448545353 448546483 0.000000e+00 1873
11 TraesCS5A01G098100 chr4A 99.074 108 1 0 297 404 448545420 448545313 6.600000e-46 195
12 TraesCS5A01G098100 chr4A 98.148 108 2 0 297 404 2973728 2973621 3.070000e-44 189
13 TraesCS5A01G098100 chr6A 95.745 1128 46 2 407 1532 176175866 176176993 0.000000e+00 1816
14 TraesCS5A01G098100 chr6A 96.723 824 24 3 1518 2338 115772714 115773537 0.000000e+00 1369
15 TraesCS5A01G098100 chr6A 82.589 224 33 5 1 218 335775877 335776100 2.370000e-45 193
16 TraesCS5A01G098100 chr7A 95.871 1114 45 1 419 1531 663372837 663371724 0.000000e+00 1801
17 TraesCS5A01G098100 chr7A 97.651 809 17 2 1531 2338 462466754 462465947 0.000000e+00 1387
18 TraesCS5A01G098100 chr7A 97.525 808 19 1 1533 2339 471875944 471875137 0.000000e+00 1380
19 TraesCS5A01G098100 chr2B 93.867 1125 67 2 409 1532 452233231 452234354 0.000000e+00 1694
20 TraesCS5A01G098100 chr2B 84.264 197 21 8 1 189 665457371 665457177 1.430000e-42 183
21 TraesCS5A01G098100 chr2B 91.589 107 9 0 298 404 452233295 452233189 5.210000e-32 148
22 TraesCS5A01G098100 chr6B 91.681 1130 87 6 407 1532 301309 300183 0.000000e+00 1559
23 TraesCS5A01G098100 chr6B 94.175 103 6 0 298 400 301243 301345 8.650000e-35 158
24 TraesCS5A01G098100 chr6B 90.476 105 10 0 298 402 411081495 411081599 3.130000e-29 139
25 TraesCS5A01G098100 chr4B 90.088 1130 105 7 407 1532 98852397 98853523 0.000000e+00 1459
26 TraesCS5A01G098100 chr4B 93.458 107 7 0 298 404 98852463 98852357 2.410000e-35 159
27 TraesCS5A01G098100 chr1A 97.770 807 17 1 1533 2338 97833792 97832986 0.000000e+00 1389
28 TraesCS5A01G098100 chr1A 97.649 808 17 2 1533 2338 345119392 345118585 0.000000e+00 1386
29 TraesCS5A01G098100 chr2A 97.297 814 18 4 1529 2339 417548588 417547776 0.000000e+00 1378
30 TraesCS5A01G098100 chr5D 83.260 227 32 4 1 221 512212001 512211775 1.100000e-48 204
31 TraesCS5A01G098100 chr5D 85.024 207 19 10 1 199 487001192 487000990 1.420000e-47 200
32 TraesCS5A01G098100 chr5D 82.828 198 25 9 1 191 485993155 485993350 4.000000e-38 169
33 TraesCS5A01G098100 chr6D 82.096 229 31 9 1 221 242988119 242987893 1.100000e-43 187
34 TraesCS5A01G098100 chr3D 82.018 228 33 7 1 221 2636016 2635790 1.100000e-43 187
35 TraesCS5A01G098100 chr2D 82.096 229 31 9 1 221 507057388 507057162 1.100000e-43 187
36 TraesCS5A01G098100 chr7B 93.814 97 6 0 298 394 630566860 630566764 1.870000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G098100 chr5A 139506601 139508939 2338 True 4320 4320 100.000 1 2339 1 chr5A.!!$R3 2338
1 TraesCS5A01G098100 chr5A 480182826 480183952 1126 True 1869 1869 96.628 407 1532 1 chr5A.!!$R4 1125
2 TraesCS5A01G098100 chr5A 702078656 702079782 1126 False 1847 1847 96.277 407 1532 1 chr5A.!!$F3 1125
3 TraesCS5A01G098100 chr5A 139491874 139492680 806 True 1397 1397 97.893 1533 2339 1 chr5A.!!$R2 806
4 TraesCS5A01G098100 chr5A 270121918 270122727 809 False 1382 1382 97.531 1533 2339 1 chr5A.!!$F1 806
5 TraesCS5A01G098100 chr5A 69678479 69679298 819 True 1375 1375 96.959 1519 2337 1 chr5A.!!$R1 818
6 TraesCS5A01G098100 chr4A 2973661 2974787 1126 False 1897 1897 97.072 407 1531 1 chr4A.!!$F1 1124
7 TraesCS5A01G098100 chr4A 448545353 448546483 1130 False 1873 1873 96.640 407 1532 1 chr4A.!!$F2 1125
8 TraesCS5A01G098100 chr6A 176175866 176176993 1127 False 1816 1816 95.745 407 1532 1 chr6A.!!$F2 1125
9 TraesCS5A01G098100 chr6A 115772714 115773537 823 False 1369 1369 96.723 1518 2338 1 chr6A.!!$F1 820
10 TraesCS5A01G098100 chr7A 663371724 663372837 1113 True 1801 1801 95.871 419 1531 1 chr7A.!!$R3 1112
11 TraesCS5A01G098100 chr7A 462465947 462466754 807 True 1387 1387 97.651 1531 2338 1 chr7A.!!$R1 807
12 TraesCS5A01G098100 chr7A 471875137 471875944 807 True 1380 1380 97.525 1533 2339 1 chr7A.!!$R2 806
13 TraesCS5A01G098100 chr2B 452233231 452234354 1123 False 1694 1694 93.867 409 1532 1 chr2B.!!$F1 1123
14 TraesCS5A01G098100 chr6B 300183 301309 1126 True 1559 1559 91.681 407 1532 1 chr6B.!!$R1 1125
15 TraesCS5A01G098100 chr4B 98852397 98853523 1126 False 1459 1459 90.088 407 1532 1 chr4B.!!$F1 1125
16 TraesCS5A01G098100 chr1A 97832986 97833792 806 True 1389 1389 97.770 1533 2338 1 chr1A.!!$R1 805
17 TraesCS5A01G098100 chr1A 345118585 345119392 807 True 1386 1386 97.649 1533 2338 1 chr1A.!!$R2 805
18 TraesCS5A01G098100 chr2A 417547776 417548588 812 True 1378 1378 97.297 1529 2339 1 chr2A.!!$R1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.031994 GTGCGTGCAAAATTGGGTCT 59.968 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1369 0.736325 ACGACAGCGGCAACTATGAC 60.736 55.0 1.45 0.0 43.17 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.588719 TTTATTTGGCTTGTGAACTATGCT 57.411 33.333 0.00 0.00 0.00 3.79
71 72 7.695480 TTTATTTGGCTTGTGAACTATGCTA 57.305 32.000 0.00 0.00 0.00 3.49
72 73 7.880160 TTATTTGGCTTGTGAACTATGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
73 74 8.972458 TTATTTGGCTTGTGAACTATGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
74 75 9.573166 TTATTTGGCTTGTGAACTATGCTATAT 57.427 29.630 0.00 0.00 0.00 0.86
75 76 7.880160 TTTGGCTTGTGAACTATGCTATATT 57.120 32.000 0.00 0.00 0.00 1.28
76 77 7.880160 TTGGCTTGTGAACTATGCTATATTT 57.120 32.000 0.00 0.00 0.00 1.40
77 78 7.263100 TGGCTTGTGAACTATGCTATATTTG 57.737 36.000 0.00 0.00 0.00 2.32
78 79 6.828273 TGGCTTGTGAACTATGCTATATTTGT 59.172 34.615 0.00 0.00 0.00 2.83
79 80 7.339212 TGGCTTGTGAACTATGCTATATTTGTT 59.661 33.333 0.00 0.00 0.00 2.83
80 81 8.190784 GGCTTGTGAACTATGCTATATTTGTTT 58.809 33.333 0.00 0.00 0.00 2.83
81 82 9.013490 GCTTGTGAACTATGCTATATTTGTTTG 57.987 33.333 0.00 0.00 0.00 2.93
82 83 8.909708 TTGTGAACTATGCTATATTTGTTTGC 57.090 30.769 0.00 0.00 0.00 3.68
83 84 8.279970 TGTGAACTATGCTATATTTGTTTGCT 57.720 30.769 0.00 0.00 0.00 3.91
84 85 8.739039 TGTGAACTATGCTATATTTGTTTGCTT 58.261 29.630 0.00 0.00 0.00 3.91
85 86 9.013490 GTGAACTATGCTATATTTGTTTGCTTG 57.987 33.333 0.00 0.00 0.00 4.01
86 87 8.739039 TGAACTATGCTATATTTGTTTGCTTGT 58.261 29.630 0.00 0.00 0.00 3.16
87 88 8.915871 AACTATGCTATATTTGTTTGCTTGTG 57.084 30.769 0.00 0.00 0.00 3.33
88 89 8.279970 ACTATGCTATATTTGTTTGCTTGTGA 57.720 30.769 0.00 0.00 0.00 3.58
89 90 8.739039 ACTATGCTATATTTGTTTGCTTGTGAA 58.261 29.630 0.00 0.00 0.00 3.18
90 91 9.571810 CTATGCTATATTTGTTTGCTTGTGAAA 57.428 29.630 0.00 0.00 0.00 2.69
91 92 7.636259 TGCTATATTTGTTTGCTTGTGAAAC 57.364 32.000 0.00 0.00 34.48 2.78
92 93 7.432869 TGCTATATTTGTTTGCTTGTGAAACT 58.567 30.769 0.00 0.00 38.04 2.66
93 94 8.572185 TGCTATATTTGTTTGCTTGTGAAACTA 58.428 29.630 0.00 0.00 38.04 2.24
94 95 9.573133 GCTATATTTGTTTGCTTGTGAAACTAT 57.427 29.630 0.00 0.00 38.04 2.12
99 100 8.988064 TTTGTTTGCTTGTGAAACTATGTAAA 57.012 26.923 0.00 0.00 38.04 2.01
100 101 8.988064 TTGTTTGCTTGTGAAACTATGTAAAA 57.012 26.923 0.00 0.00 38.04 1.52
101 102 9.593134 TTGTTTGCTTGTGAAACTATGTAAAAT 57.407 25.926 0.00 0.00 38.04 1.82
102 103 9.029243 TGTTTGCTTGTGAAACTATGTAAAATG 57.971 29.630 0.00 0.00 38.04 2.32
103 104 9.030301 GTTTGCTTGTGAAACTATGTAAAATGT 57.970 29.630 0.00 0.00 38.04 2.71
104 105 8.572828 TTGCTTGTGAAACTATGTAAAATGTG 57.427 30.769 0.00 0.00 38.04 3.21
105 106 7.711846 TGCTTGTGAAACTATGTAAAATGTGT 58.288 30.769 0.00 0.00 38.04 3.72
106 107 7.647318 TGCTTGTGAAACTATGTAAAATGTGTG 59.353 33.333 0.00 0.00 38.04 3.82
107 108 7.647715 GCTTGTGAAACTATGTAAAATGTGTGT 59.352 33.333 0.00 0.00 38.04 3.72
125 126 8.912787 ATGTGTGTATTTGTTTAAAAACGACA 57.087 26.923 0.00 1.15 41.74 4.35
126 127 8.383264 TGTGTGTATTTGTTTAAAAACGACAG 57.617 30.769 0.00 0.00 41.74 3.51
127 128 7.008447 TGTGTGTATTTGTTTAAAAACGACAGC 59.992 33.333 0.00 0.00 41.74 4.40
128 129 7.008447 GTGTGTATTTGTTTAAAAACGACAGCA 59.992 33.333 0.00 2.91 41.74 4.41
129 130 7.541091 TGTGTATTTGTTTAAAAACGACAGCAA 59.459 29.630 0.00 0.00 41.74 3.91
130 131 8.047859 GTGTATTTGTTTAAAAACGACAGCAAG 58.952 33.333 0.00 0.00 41.74 4.01
131 132 5.443142 TTTGTTTAAAAACGACAGCAAGC 57.557 34.783 0.00 0.00 41.74 4.01
132 133 3.440228 TGTTTAAAAACGACAGCAAGCC 58.560 40.909 0.00 0.00 41.74 4.35
133 134 3.129638 TGTTTAAAAACGACAGCAAGCCT 59.870 39.130 0.00 0.00 41.74 4.58
134 135 4.335874 TGTTTAAAAACGACAGCAAGCCTA 59.664 37.500 0.00 0.00 41.74 3.93
135 136 4.742438 TTAAAAACGACAGCAAGCCTAG 57.258 40.909 0.00 0.00 0.00 3.02
136 137 0.875059 AAAACGACAGCAAGCCTAGC 59.125 50.000 0.00 0.00 0.00 3.42
137 138 1.291877 AAACGACAGCAAGCCTAGCG 61.292 55.000 0.00 0.00 37.01 4.26
138 139 2.125912 CGACAGCAAGCCTAGCGT 60.126 61.111 0.00 0.00 37.01 5.07
139 140 2.447887 CGACAGCAAGCCTAGCGTG 61.448 63.158 0.00 0.00 40.71 5.34
144 145 4.152625 CAAGCCTAGCGTGCGTGC 62.153 66.667 0.00 0.00 30.89 5.34
145 146 4.680237 AAGCCTAGCGTGCGTGCA 62.680 61.111 2.66 0.00 37.31 4.57
146 147 4.680237 AGCCTAGCGTGCGTGCAA 62.680 61.111 0.00 0.00 37.31 4.08
147 148 3.722295 GCCTAGCGTGCGTGCAAA 61.722 61.111 0.00 0.00 37.31 3.68
148 149 2.942879 CCTAGCGTGCGTGCAAAA 59.057 55.556 0.00 0.00 37.31 2.44
149 150 1.501741 CCTAGCGTGCGTGCAAAAT 59.498 52.632 0.00 0.00 37.31 1.82
150 151 0.109781 CCTAGCGTGCGTGCAAAATT 60.110 50.000 0.00 0.00 37.31 1.82
151 152 0.976963 CTAGCGTGCGTGCAAAATTG 59.023 50.000 0.00 0.00 37.31 2.32
152 153 0.386605 TAGCGTGCGTGCAAAATTGG 60.387 50.000 0.00 0.00 37.31 3.16
153 154 2.656807 GCGTGCGTGCAAAATTGGG 61.657 57.895 0.00 0.00 34.15 4.12
154 155 1.299773 CGTGCGTGCAAAATTGGGT 60.300 52.632 0.00 0.00 0.00 4.51
155 156 1.274798 CGTGCGTGCAAAATTGGGTC 61.275 55.000 0.00 0.00 0.00 4.46
156 157 0.031994 GTGCGTGCAAAATTGGGTCT 59.968 50.000 0.00 0.00 0.00 3.85
157 158 1.268352 GTGCGTGCAAAATTGGGTCTA 59.732 47.619 0.00 0.00 0.00 2.59
158 159 1.268352 TGCGTGCAAAATTGGGTCTAC 59.732 47.619 0.00 0.00 0.00 2.59
159 160 1.727857 GCGTGCAAAATTGGGTCTACG 60.728 52.381 0.00 0.00 0.00 3.51
160 161 1.727857 CGTGCAAAATTGGGTCTACGC 60.728 52.381 0.00 0.00 0.00 4.42
161 162 0.519519 TGCAAAATTGGGTCTACGCG 59.480 50.000 3.53 3.53 0.00 6.01
162 163 0.519961 GCAAAATTGGGTCTACGCGT 59.480 50.000 19.17 19.17 0.00 6.01
163 164 1.068816 GCAAAATTGGGTCTACGCGTT 60.069 47.619 20.78 0.80 0.00 4.84
164 165 2.160022 GCAAAATTGGGTCTACGCGTTA 59.840 45.455 20.78 2.75 0.00 3.18
165 166 3.726782 GCAAAATTGGGTCTACGCGTTAG 60.727 47.826 20.78 13.15 0.00 2.34
166 167 2.304751 AATTGGGTCTACGCGTTAGG 57.695 50.000 20.78 8.75 0.00 2.69
167 168 1.188863 ATTGGGTCTACGCGTTAGGT 58.811 50.000 20.78 0.00 0.00 3.08
168 169 0.244450 TTGGGTCTACGCGTTAGGTG 59.756 55.000 20.78 3.18 0.00 4.00
169 170 0.895100 TGGGTCTACGCGTTAGGTGT 60.895 55.000 20.78 0.00 43.14 4.16
170 171 1.094785 GGGTCTACGCGTTAGGTGTA 58.905 55.000 20.78 0.00 40.54 2.90
171 172 1.202188 GGGTCTACGCGTTAGGTGTAC 60.202 57.143 20.78 6.87 40.54 2.90
172 173 1.740025 GGTCTACGCGTTAGGTGTACT 59.260 52.381 20.78 0.00 40.54 2.73
173 174 2.476854 GGTCTACGCGTTAGGTGTACTG 60.477 54.545 20.78 0.00 40.54 2.74
174 175 1.131126 TCTACGCGTTAGGTGTACTGC 59.869 52.381 20.78 0.00 40.54 4.40
175 176 0.171007 TACGCGTTAGGTGTACTGCC 59.829 55.000 20.78 0.00 40.54 4.85
176 177 2.156446 CGCGTTAGGTGTACTGCCG 61.156 63.158 0.00 0.00 0.00 5.69
177 178 1.213537 GCGTTAGGTGTACTGCCGA 59.786 57.895 0.00 0.00 0.00 5.54
178 179 1.074872 GCGTTAGGTGTACTGCCGAC 61.075 60.000 0.00 1.38 0.00 4.79
179 180 0.457337 CGTTAGGTGTACTGCCGACC 60.457 60.000 0.00 0.00 0.00 4.79
180 181 0.108472 GTTAGGTGTACTGCCGACCC 60.108 60.000 0.00 0.00 0.00 4.46
181 182 0.542467 TTAGGTGTACTGCCGACCCA 60.542 55.000 0.00 0.00 0.00 4.51
182 183 0.542467 TAGGTGTACTGCCGACCCAA 60.542 55.000 0.00 0.00 0.00 4.12
183 184 1.670083 GGTGTACTGCCGACCCAAC 60.670 63.158 0.00 0.00 0.00 3.77
184 185 1.070105 GTGTACTGCCGACCCAACA 59.930 57.895 0.00 0.00 0.00 3.33
185 186 0.533308 GTGTACTGCCGACCCAACAA 60.533 55.000 0.00 0.00 0.00 2.83
186 187 0.180642 TGTACTGCCGACCCAACAAA 59.819 50.000 0.00 0.00 0.00 2.83
187 188 1.310904 GTACTGCCGACCCAACAAAA 58.689 50.000 0.00 0.00 0.00 2.44
188 189 1.677052 GTACTGCCGACCCAACAAAAA 59.323 47.619 0.00 0.00 0.00 1.94
189 190 0.458260 ACTGCCGACCCAACAAAAAC 59.542 50.000 0.00 0.00 0.00 2.43
190 191 0.457851 CTGCCGACCCAACAAAAACA 59.542 50.000 0.00 0.00 0.00 2.83
191 192 0.895530 TGCCGACCCAACAAAAACAA 59.104 45.000 0.00 0.00 0.00 2.83
192 193 1.134965 TGCCGACCCAACAAAAACAAG 60.135 47.619 0.00 0.00 0.00 3.16
193 194 1.804746 GCCGACCCAACAAAAACAAGG 60.805 52.381 0.00 0.00 0.00 3.61
194 195 1.566404 CGACCCAACAAAAACAAGGC 58.434 50.000 0.00 0.00 0.00 4.35
195 196 1.566404 GACCCAACAAAAACAAGGCG 58.434 50.000 0.00 0.00 0.00 5.52
196 197 0.176910 ACCCAACAAAAACAAGGCGG 59.823 50.000 0.00 0.00 0.00 6.13
197 198 0.461961 CCCAACAAAAACAAGGCGGA 59.538 50.000 0.00 0.00 0.00 5.54
198 199 1.566404 CCAACAAAAACAAGGCGGAC 58.434 50.000 0.00 0.00 0.00 4.79
199 200 1.196200 CAACAAAAACAAGGCGGACG 58.804 50.000 0.00 0.00 0.00 4.79
200 201 1.096416 AACAAAAACAAGGCGGACGA 58.904 45.000 0.00 0.00 0.00 4.20
201 202 1.314730 ACAAAAACAAGGCGGACGAT 58.685 45.000 0.00 0.00 0.00 3.73
202 203 1.001815 ACAAAAACAAGGCGGACGATG 60.002 47.619 0.00 0.00 0.00 3.84
203 204 1.265635 CAAAAACAAGGCGGACGATGA 59.734 47.619 0.00 0.00 0.00 2.92
204 205 1.821216 AAAACAAGGCGGACGATGAT 58.179 45.000 0.00 0.00 0.00 2.45
205 206 1.369625 AAACAAGGCGGACGATGATC 58.630 50.000 0.00 0.00 0.00 2.92
206 207 0.806102 AACAAGGCGGACGATGATCG 60.806 55.000 14.01 14.01 46.93 3.69
207 208 1.065764 CAAGGCGGACGATGATCGA 59.934 57.895 22.88 0.00 43.74 3.59
208 209 1.065928 AAGGCGGACGATGATCGAC 59.934 57.895 22.88 15.49 43.74 4.20
209 210 2.663630 AAGGCGGACGATGATCGACG 62.664 60.000 22.88 23.41 43.74 5.12
210 211 2.726180 GCGGACGATGATCGACGG 60.726 66.667 26.79 22.46 43.74 4.79
211 212 2.713770 CGGACGATGATCGACGGT 59.286 61.111 22.88 0.00 43.74 4.83
212 213 1.368969 CGGACGATGATCGACGGTC 60.369 63.158 22.88 8.22 43.74 4.79
213 214 1.368969 GGACGATGATCGACGGTCG 60.369 63.158 22.88 23.73 43.74 4.79
221 222 3.368822 TCGACGGTCGACCCAAAT 58.631 55.556 27.66 11.88 44.82 2.32
222 223 1.213537 TCGACGGTCGACCCAAATC 59.786 57.895 27.66 18.54 44.82 2.17
223 224 1.808390 CGACGGTCGACCCAAATCC 60.808 63.158 28.52 10.18 43.74 3.01
224 225 1.808390 GACGGTCGACCCAAATCCG 60.808 63.158 28.52 17.31 45.53 4.18
225 226 2.263540 CGGTCGACCCAAATCCGT 59.736 61.111 28.52 0.00 36.99 4.69
226 227 1.375013 CGGTCGACCCAAATCCGTT 60.375 57.895 28.52 0.00 36.99 4.44
227 228 0.952010 CGGTCGACCCAAATCCGTTT 60.952 55.000 28.52 0.00 36.99 3.60
228 229 0.519961 GGTCGACCCAAATCCGTTTG 59.480 55.000 24.75 0.00 43.43 2.93
236 237 0.165079 CAAATCCGTTTGGGTCGACG 59.835 55.000 9.92 0.00 40.78 5.12
237 238 1.571215 AAATCCGTTTGGGTCGACGC 61.571 55.000 24.41 24.41 37.91 5.19
240 241 3.332409 CGTTTGGGTCGACGCGTT 61.332 61.111 25.18 0.00 32.11 4.84
241 242 2.247267 GTTTGGGTCGACGCGTTG 59.753 61.111 25.18 20.76 0.00 4.10
242 243 2.968156 TTTGGGTCGACGCGTTGG 60.968 61.111 25.66 15.24 0.00 3.77
243 244 3.442512 TTTGGGTCGACGCGTTGGA 62.443 57.895 25.66 17.35 0.00 3.53
244 245 3.851845 TTGGGTCGACGCGTTGGAG 62.852 63.158 25.66 12.06 0.00 3.86
246 247 4.353437 GGTCGACGCGTTGGAGGT 62.353 66.667 25.66 0.00 0.00 3.85
247 248 3.103911 GTCGACGCGTTGGAGGTG 61.104 66.667 25.66 4.72 0.00 4.00
250 251 3.112709 GACGCGTTGGAGGTGCTC 61.113 66.667 15.53 0.00 0.00 4.26
251 252 3.575351 GACGCGTTGGAGGTGCTCT 62.575 63.158 15.53 0.00 0.00 4.09
252 253 2.209064 GACGCGTTGGAGGTGCTCTA 62.209 60.000 15.53 0.00 0.00 2.43
253 254 1.080093 CGCGTTGGAGGTGCTCTAA 60.080 57.895 0.00 0.00 0.00 2.10
254 255 1.352156 CGCGTTGGAGGTGCTCTAAC 61.352 60.000 0.00 0.00 44.66 2.34
255 256 0.037232 GCGTTGGAGGTGCTCTAACT 60.037 55.000 0.00 0.00 45.49 2.24
256 257 1.203994 GCGTTGGAGGTGCTCTAACTA 59.796 52.381 0.00 0.00 45.49 2.24
257 258 2.877335 CGTTGGAGGTGCTCTAACTAC 58.123 52.381 0.00 0.00 45.49 2.73
258 259 2.416972 CGTTGGAGGTGCTCTAACTACC 60.417 54.545 0.00 0.00 45.49 3.18
259 260 2.832733 GTTGGAGGTGCTCTAACTACCT 59.167 50.000 0.00 0.00 44.69 3.08
260 261 4.021916 GTTGGAGGTGCTCTAACTACCTA 58.978 47.826 0.00 0.00 44.69 3.08
261 262 4.537945 TGGAGGTGCTCTAACTACCTAT 57.462 45.455 0.00 0.00 44.51 2.57
262 263 5.658198 TGGAGGTGCTCTAACTACCTATA 57.342 43.478 0.00 0.00 44.51 1.31
263 264 5.383476 TGGAGGTGCTCTAACTACCTATAC 58.617 45.833 0.00 0.00 44.51 1.47
264 265 5.103813 TGGAGGTGCTCTAACTACCTATACA 60.104 44.000 0.00 0.00 44.51 2.29
265 266 5.832060 GGAGGTGCTCTAACTACCTATACAA 59.168 44.000 0.00 0.00 44.51 2.41
266 267 6.323225 GGAGGTGCTCTAACTACCTATACAAA 59.677 42.308 0.00 0.00 44.51 2.83
267 268 7.349412 AGGTGCTCTAACTACCTATACAAAG 57.651 40.000 0.00 0.00 42.78 2.77
268 269 5.984323 GGTGCTCTAACTACCTATACAAAGC 59.016 44.000 0.00 0.00 0.00 3.51
269 270 6.406624 GGTGCTCTAACTACCTATACAAAGCA 60.407 42.308 0.00 0.00 33.97 3.91
270 271 7.039882 GTGCTCTAACTACCTATACAAAGCAA 58.960 38.462 0.00 0.00 37.72 3.91
271 272 7.711339 GTGCTCTAACTACCTATACAAAGCAAT 59.289 37.037 0.00 0.00 37.72 3.56
272 273 7.926555 TGCTCTAACTACCTATACAAAGCAATC 59.073 37.037 0.00 0.00 33.49 2.67
273 274 7.385478 GCTCTAACTACCTATACAAAGCAATCC 59.615 40.741 0.00 0.00 0.00 3.01
274 275 7.431249 TCTAACTACCTATACAAAGCAATCCG 58.569 38.462 0.00 0.00 0.00 4.18
275 276 4.377897 ACTACCTATACAAAGCAATCCGC 58.622 43.478 0.00 0.00 42.91 5.54
276 277 2.572290 ACCTATACAAAGCAATCCGCC 58.428 47.619 0.00 0.00 44.04 6.13
277 278 2.172717 ACCTATACAAAGCAATCCGCCT 59.827 45.455 0.00 0.00 44.04 5.52
278 279 2.808543 CCTATACAAAGCAATCCGCCTC 59.191 50.000 0.00 0.00 44.04 4.70
279 280 1.680338 ATACAAAGCAATCCGCCTCC 58.320 50.000 0.00 0.00 44.04 4.30
280 281 0.326595 TACAAAGCAATCCGCCTCCA 59.673 50.000 0.00 0.00 44.04 3.86
281 282 1.244019 ACAAAGCAATCCGCCTCCAC 61.244 55.000 0.00 0.00 44.04 4.02
282 283 2.040544 AAAGCAATCCGCCTCCACG 61.041 57.895 0.00 0.00 44.04 4.94
285 286 2.892425 CAATCCGCCTCCACGCTC 60.892 66.667 0.00 0.00 0.00 5.03
286 287 3.077556 AATCCGCCTCCACGCTCT 61.078 61.111 0.00 0.00 0.00 4.09
287 288 3.376935 AATCCGCCTCCACGCTCTG 62.377 63.158 0.00 0.00 0.00 3.35
292 293 4.463879 CCTCCACGCTCTGCCAGG 62.464 72.222 0.00 0.00 0.00 4.45
293 294 3.699894 CTCCACGCTCTGCCAGGT 61.700 66.667 0.00 0.00 0.00 4.00
294 295 3.655810 CTCCACGCTCTGCCAGGTC 62.656 68.421 0.00 0.00 0.00 3.85
300 301 2.357517 CTCTGCCAGGTCGCGTTT 60.358 61.111 5.77 0.00 0.00 3.60
301 302 1.961277 CTCTGCCAGGTCGCGTTTT 60.961 57.895 5.77 0.00 0.00 2.43
302 303 2.175184 CTCTGCCAGGTCGCGTTTTG 62.175 60.000 5.77 2.61 0.00 2.44
303 304 2.203084 TGCCAGGTCGCGTTTTGA 60.203 55.556 5.77 0.00 0.00 2.69
304 305 1.577328 CTGCCAGGTCGCGTTTTGAT 61.577 55.000 5.77 0.00 0.00 2.57
305 306 1.134694 GCCAGGTCGCGTTTTGATC 59.865 57.895 5.77 0.00 0.00 2.92
306 307 1.298859 GCCAGGTCGCGTTTTGATCT 61.299 55.000 5.77 0.00 0.00 2.75
307 308 1.156736 CCAGGTCGCGTTTTGATCTT 58.843 50.000 5.77 0.00 0.00 2.40
308 309 1.535462 CCAGGTCGCGTTTTGATCTTT 59.465 47.619 5.77 0.00 0.00 2.52
309 310 2.412847 CCAGGTCGCGTTTTGATCTTTC 60.413 50.000 5.77 0.00 0.00 2.62
310 311 2.480419 CAGGTCGCGTTTTGATCTTTCT 59.520 45.455 5.77 0.00 0.00 2.52
311 312 3.678072 CAGGTCGCGTTTTGATCTTTCTA 59.322 43.478 5.77 0.00 0.00 2.10
312 313 3.678548 AGGTCGCGTTTTGATCTTTCTAC 59.321 43.478 5.77 0.00 0.00 2.59
313 314 3.181523 GGTCGCGTTTTGATCTTTCTACC 60.182 47.826 5.77 0.00 0.00 3.18
314 315 3.430895 GTCGCGTTTTGATCTTTCTACCA 59.569 43.478 5.77 0.00 0.00 3.25
315 316 3.678072 TCGCGTTTTGATCTTTCTACCAG 59.322 43.478 5.77 0.00 0.00 4.00
316 317 3.725010 CGCGTTTTGATCTTTCTACCAGC 60.725 47.826 0.00 0.00 0.00 4.85
317 318 3.426292 GCGTTTTGATCTTTCTACCAGCC 60.426 47.826 0.00 0.00 0.00 4.85
318 319 3.751175 CGTTTTGATCTTTCTACCAGCCA 59.249 43.478 0.00 0.00 0.00 4.75
319 320 4.396166 CGTTTTGATCTTTCTACCAGCCAT 59.604 41.667 0.00 0.00 0.00 4.40
320 321 5.584649 CGTTTTGATCTTTCTACCAGCCATA 59.415 40.000 0.00 0.00 0.00 2.74
321 322 6.260936 CGTTTTGATCTTTCTACCAGCCATAT 59.739 38.462 0.00 0.00 0.00 1.78
322 323 7.441157 CGTTTTGATCTTTCTACCAGCCATATA 59.559 37.037 0.00 0.00 0.00 0.86
323 324 8.560374 GTTTTGATCTTTCTACCAGCCATATAC 58.440 37.037 0.00 0.00 0.00 1.47
324 325 6.994421 TGATCTTTCTACCAGCCATATACA 57.006 37.500 0.00 0.00 0.00 2.29
325 326 7.373617 TGATCTTTCTACCAGCCATATACAA 57.626 36.000 0.00 0.00 0.00 2.41
326 327 7.445121 TGATCTTTCTACCAGCCATATACAAG 58.555 38.462 0.00 0.00 0.00 3.16
327 328 6.174720 TCTTTCTACCAGCCATATACAAGG 57.825 41.667 0.00 0.00 0.00 3.61
339 340 7.576861 GCCATATACAAGGCCTTAACTTTAA 57.423 36.000 20.00 0.39 45.18 1.52
340 341 7.649057 GCCATATACAAGGCCTTAACTTTAAG 58.351 38.462 20.00 5.59 45.18 1.85
341 342 7.501225 GCCATATACAAGGCCTTAACTTTAAGA 59.499 37.037 20.00 0.00 45.18 2.10
342 343 9.403583 CCATATACAAGGCCTTAACTTTAAGAA 57.596 33.333 20.00 0.00 42.05 2.52
344 345 7.939784 ATACAAGGCCTTAACTTTAAGAAGG 57.060 36.000 20.00 3.16 42.05 3.46
345 346 5.077564 ACAAGGCCTTAACTTTAAGAAGGG 58.922 41.667 20.00 2.68 42.05 3.95
349 350 5.723672 GCCTTAACTTTAAGAAGGGCTTT 57.276 39.130 12.46 0.00 42.05 3.51
350 351 5.710984 GCCTTAACTTTAAGAAGGGCTTTC 58.289 41.667 12.46 0.32 42.05 2.62
351 352 5.336531 GCCTTAACTTTAAGAAGGGCTTTCC 60.337 44.000 12.46 0.00 42.05 3.13
352 353 5.773176 CCTTAACTTTAAGAAGGGCTTTCCA 59.227 40.000 5.65 0.00 42.05 3.53
353 354 6.071896 CCTTAACTTTAAGAAGGGCTTTCCAG 60.072 42.308 5.65 0.47 42.05 3.86
354 355 3.157881 ACTTTAAGAAGGGCTTTCCAGC 58.842 45.455 5.65 0.00 39.63 4.85
355 356 3.436470 ACTTTAAGAAGGGCTTTCCAGCA 60.436 43.478 5.65 0.00 40.93 4.41
368 369 2.028420 TCCAGCACGGAGAATCATTG 57.972 50.000 0.00 0.00 39.64 2.82
369 370 1.554617 TCCAGCACGGAGAATCATTGA 59.445 47.619 0.00 0.00 39.64 2.57
370 371 2.027285 TCCAGCACGGAGAATCATTGAA 60.027 45.455 0.00 0.00 39.64 2.69
371 372 2.096496 CCAGCACGGAGAATCATTGAAC 59.904 50.000 0.00 0.00 36.25 3.18
372 373 2.096496 CAGCACGGAGAATCATTGAACC 59.904 50.000 0.00 0.00 36.25 3.62
373 374 2.026822 AGCACGGAGAATCATTGAACCT 60.027 45.455 0.00 0.00 36.25 3.50
374 375 2.096496 GCACGGAGAATCATTGAACCTG 59.904 50.000 0.00 0.00 36.25 4.00
375 376 2.679837 CACGGAGAATCATTGAACCTGG 59.320 50.000 0.00 0.00 36.25 4.45
376 377 2.292267 CGGAGAATCATTGAACCTGGG 58.708 52.381 0.00 0.00 36.25 4.45
377 378 2.356125 CGGAGAATCATTGAACCTGGGT 60.356 50.000 0.00 0.00 36.25 4.51
378 379 3.701664 GGAGAATCATTGAACCTGGGTT 58.298 45.455 4.52 4.52 37.80 4.11
379 380 3.696548 GGAGAATCATTGAACCTGGGTTC 59.303 47.826 21.63 21.63 45.47 3.62
388 389 0.250597 AACCTGGGTTCAACCGTAGC 60.251 55.000 0.00 0.00 39.83 3.58
389 390 1.376812 CCTGGGTTCAACCGTAGCC 60.377 63.158 0.00 0.00 39.83 3.93
390 391 1.373435 CTGGGTTCAACCGTAGCCA 59.627 57.895 0.00 0.00 39.83 4.75
391 392 0.953960 CTGGGTTCAACCGTAGCCAC 60.954 60.000 0.00 0.00 39.83 5.01
392 393 1.071814 GGGTTCAACCGTAGCCACA 59.928 57.895 0.00 0.00 39.83 4.17
393 394 0.953960 GGGTTCAACCGTAGCCACAG 60.954 60.000 0.00 0.00 39.83 3.66
394 395 0.250166 GGTTCAACCGTAGCCACAGT 60.250 55.000 0.00 0.00 0.00 3.55
395 396 1.589803 GTTCAACCGTAGCCACAGTT 58.410 50.000 0.00 0.00 0.00 3.16
396 397 1.529865 GTTCAACCGTAGCCACAGTTC 59.470 52.381 0.00 0.00 0.00 3.01
397 398 1.045407 TCAACCGTAGCCACAGTTCT 58.955 50.000 0.00 0.00 0.00 3.01
398 399 1.414919 TCAACCGTAGCCACAGTTCTT 59.585 47.619 0.00 0.00 0.00 2.52
399 400 2.158871 TCAACCGTAGCCACAGTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
400 401 2.616842 CAACCGTAGCCACAGTTCTTTT 59.383 45.455 0.00 0.00 0.00 2.27
401 402 2.927028 ACCGTAGCCACAGTTCTTTTT 58.073 42.857 0.00 0.00 0.00 1.94
471 472 7.933577 TGTATATGGCTGGTAGAAAGATCAAAG 59.066 37.037 0.00 0.00 0.00 2.77
474 475 3.262420 GCTGGTAGAAAGATCAAAGCGA 58.738 45.455 0.00 0.00 0.00 4.93
542 543 6.983984 GTCTAGACCATTCCAGGACTATTAC 58.016 44.000 12.13 0.00 35.82 1.89
830 837 0.396278 GGCCAAGATCCCCCTCAAAG 60.396 60.000 0.00 0.00 0.00 2.77
986 994 2.038033 GTCCTGTGGCTAAAGTGGTGTA 59.962 50.000 0.00 0.00 0.00 2.90
1048 1056 6.491745 TCCAAACAGTTACTGGCAATATTTCA 59.508 34.615 17.21 0.00 35.51 2.69
1102 1110 4.286032 AGAAATACTACACTGTTGGCCTGA 59.714 41.667 3.32 0.00 0.00 3.86
1238 1249 1.980765 AGGTCTTCAGCAAGGTGATGA 59.019 47.619 12.11 12.11 41.48 2.92
1309 1320 2.159000 AGCATGATGAAGATGTGCGAGA 60.159 45.455 0.00 0.00 40.54 4.04
1358 1369 2.510012 TCGCAATCTCGCCTGCTG 60.510 61.111 0.00 0.00 36.38 4.41
1362 1373 1.094073 GCAATCTCGCCTGCTGTCAT 61.094 55.000 0.00 0.00 35.62 3.06
1452 1464 9.953697 CTGTAATAGACTGTAGTATTTCAGGTC 57.046 37.037 14.70 0.00 33.60 3.85
1651 1664 3.637229 GGTAGAAGTCCCTCATGATTCGA 59.363 47.826 0.00 0.00 0.00 3.71
1910 1927 6.017440 CCAAAAACCTATGTCTTCGAGTGAAA 60.017 38.462 0.00 0.00 32.66 2.69
1988 2005 5.438761 AGTAAAGTTGCCATGTGAGTTTC 57.561 39.130 0.00 0.00 0.00 2.78
2325 2345 2.626840 GTTCTGAGCATCCAAGAGACC 58.373 52.381 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.917088 AGCATAGTTCACAAGCCAAATAAATAT 58.083 29.630 0.00 0.00 0.00 1.28
45 46 8.292444 AGCATAGTTCACAAGCCAAATAAATA 57.708 30.769 0.00 0.00 0.00 1.40
46 47 7.174107 AGCATAGTTCACAAGCCAAATAAAT 57.826 32.000 0.00 0.00 0.00 1.40
47 48 6.588719 AGCATAGTTCACAAGCCAAATAAA 57.411 33.333 0.00 0.00 0.00 1.40
48 49 7.880160 ATAGCATAGTTCACAAGCCAAATAA 57.120 32.000 0.00 0.00 0.00 1.40
49 50 9.573166 AATATAGCATAGTTCACAAGCCAAATA 57.427 29.630 0.00 0.00 0.00 1.40
50 51 8.469309 AATATAGCATAGTTCACAAGCCAAAT 57.531 30.769 0.00 0.00 0.00 2.32
51 52 7.880160 AATATAGCATAGTTCACAAGCCAAA 57.120 32.000 0.00 0.00 0.00 3.28
52 53 7.339212 ACAAATATAGCATAGTTCACAAGCCAA 59.661 33.333 0.00 0.00 0.00 4.52
53 54 6.828273 ACAAATATAGCATAGTTCACAAGCCA 59.172 34.615 0.00 0.00 0.00 4.75
54 55 7.264373 ACAAATATAGCATAGTTCACAAGCC 57.736 36.000 0.00 0.00 0.00 4.35
55 56 9.013490 CAAACAAATATAGCATAGTTCACAAGC 57.987 33.333 0.00 0.00 0.00 4.01
56 57 9.013490 GCAAACAAATATAGCATAGTTCACAAG 57.987 33.333 0.00 0.00 0.00 3.16
57 58 8.739039 AGCAAACAAATATAGCATAGTTCACAA 58.261 29.630 0.00 0.00 0.00 3.33
58 59 8.279970 AGCAAACAAATATAGCATAGTTCACA 57.720 30.769 0.00 0.00 0.00 3.58
59 60 9.013490 CAAGCAAACAAATATAGCATAGTTCAC 57.987 33.333 0.00 0.00 0.00 3.18
60 61 8.739039 ACAAGCAAACAAATATAGCATAGTTCA 58.261 29.630 0.00 0.00 0.00 3.18
61 62 9.013490 CACAAGCAAACAAATATAGCATAGTTC 57.987 33.333 0.00 0.00 0.00 3.01
62 63 8.739039 TCACAAGCAAACAAATATAGCATAGTT 58.261 29.630 0.00 0.00 0.00 2.24
63 64 8.279970 TCACAAGCAAACAAATATAGCATAGT 57.720 30.769 0.00 0.00 0.00 2.12
64 65 9.571810 TTTCACAAGCAAACAAATATAGCATAG 57.428 29.630 0.00 0.00 0.00 2.23
65 66 9.352784 GTTTCACAAGCAAACAAATATAGCATA 57.647 29.630 0.00 0.00 34.43 3.14
66 67 8.090214 AGTTTCACAAGCAAACAAATATAGCAT 58.910 29.630 0.19 0.00 36.38 3.79
67 68 7.432869 AGTTTCACAAGCAAACAAATATAGCA 58.567 30.769 0.19 0.00 36.38 3.49
68 69 7.873739 AGTTTCACAAGCAAACAAATATAGC 57.126 32.000 0.19 0.00 36.38 2.97
73 74 9.593134 TTTACATAGTTTCACAAGCAAACAAAT 57.407 25.926 0.19 0.00 36.38 2.32
74 75 8.988064 TTTACATAGTTTCACAAGCAAACAAA 57.012 26.923 0.19 0.00 36.38 2.83
75 76 8.988064 TTTTACATAGTTTCACAAGCAAACAA 57.012 26.923 0.19 0.00 36.38 2.83
76 77 9.029243 CATTTTACATAGTTTCACAAGCAAACA 57.971 29.630 0.19 0.00 36.38 2.83
77 78 9.030301 ACATTTTACATAGTTTCACAAGCAAAC 57.970 29.630 0.00 0.00 34.47 2.93
78 79 9.029243 CACATTTTACATAGTTTCACAAGCAAA 57.971 29.630 0.00 0.00 0.00 3.68
79 80 8.194104 ACACATTTTACATAGTTTCACAAGCAA 58.806 29.630 0.00 0.00 0.00 3.91
80 81 7.647318 CACACATTTTACATAGTTTCACAAGCA 59.353 33.333 0.00 0.00 0.00 3.91
81 82 7.647715 ACACACATTTTACATAGTTTCACAAGC 59.352 33.333 0.00 0.00 0.00 4.01
99 100 9.355215 TGTCGTTTTTAAACAAATACACACATT 57.645 25.926 6.21 0.00 38.81 2.71
100 101 8.912787 TGTCGTTTTTAAACAAATACACACAT 57.087 26.923 6.21 0.00 38.81 3.21
101 102 7.008447 GCTGTCGTTTTTAAACAAATACACACA 59.992 33.333 6.21 0.00 38.81 3.72
102 103 7.008447 TGCTGTCGTTTTTAAACAAATACACAC 59.992 33.333 6.21 0.00 38.81 3.82
103 104 7.027760 TGCTGTCGTTTTTAAACAAATACACA 58.972 30.769 6.21 3.78 38.81 3.72
104 105 7.439204 TGCTGTCGTTTTTAAACAAATACAC 57.561 32.000 6.21 1.96 38.81 2.90
105 106 7.253817 GCTTGCTGTCGTTTTTAAACAAATACA 60.254 33.333 6.21 3.87 38.81 2.29
106 107 7.054998 GCTTGCTGTCGTTTTTAAACAAATAC 58.945 34.615 6.21 0.05 38.81 1.89
107 108 6.199342 GGCTTGCTGTCGTTTTTAAACAAATA 59.801 34.615 6.21 0.00 38.81 1.40
108 109 5.006261 GGCTTGCTGTCGTTTTTAAACAAAT 59.994 36.000 6.21 0.00 38.81 2.32
109 110 4.327627 GGCTTGCTGTCGTTTTTAAACAAA 59.672 37.500 6.21 0.00 38.81 2.83
110 111 3.860536 GGCTTGCTGTCGTTTTTAAACAA 59.139 39.130 6.21 0.00 38.81 2.83
111 112 3.129638 AGGCTTGCTGTCGTTTTTAAACA 59.870 39.130 6.21 0.00 38.81 2.83
112 113 3.702330 AGGCTTGCTGTCGTTTTTAAAC 58.298 40.909 0.00 0.00 35.59 2.01
113 114 4.555906 GCTAGGCTTGCTGTCGTTTTTAAA 60.556 41.667 13.76 0.00 0.00 1.52
114 115 3.058501 GCTAGGCTTGCTGTCGTTTTTAA 60.059 43.478 13.76 0.00 0.00 1.52
115 116 2.482721 GCTAGGCTTGCTGTCGTTTTTA 59.517 45.455 13.76 0.00 0.00 1.52
116 117 1.266989 GCTAGGCTTGCTGTCGTTTTT 59.733 47.619 13.76 0.00 0.00 1.94
117 118 0.875059 GCTAGGCTTGCTGTCGTTTT 59.125 50.000 13.76 0.00 0.00 2.43
118 119 1.291877 CGCTAGGCTTGCTGTCGTTT 61.292 55.000 18.31 0.00 0.00 3.60
119 120 1.738099 CGCTAGGCTTGCTGTCGTT 60.738 57.895 18.31 0.00 0.00 3.85
120 121 2.125912 CGCTAGGCTTGCTGTCGT 60.126 61.111 18.31 0.00 0.00 4.34
121 122 2.125912 ACGCTAGGCTTGCTGTCG 60.126 61.111 18.31 5.77 0.00 4.35
122 123 3.479370 CACGCTAGGCTTGCTGTC 58.521 61.111 18.31 0.00 0.00 3.51
127 128 4.152625 GCACGCACGCTAGGCTTG 62.153 66.667 0.00 0.00 34.05 4.01
128 129 4.680237 TGCACGCACGCTAGGCTT 62.680 61.111 0.00 0.00 0.00 4.35
129 130 4.680237 TTGCACGCACGCTAGGCT 62.680 61.111 0.00 0.00 0.00 4.58
130 131 2.527547 ATTTTGCACGCACGCTAGGC 62.528 55.000 0.00 0.00 0.00 3.93
131 132 0.109781 AATTTTGCACGCACGCTAGG 60.110 50.000 0.00 0.00 0.00 3.02
132 133 0.976963 CAATTTTGCACGCACGCTAG 59.023 50.000 0.00 0.00 0.00 3.42
133 134 0.386605 CCAATTTTGCACGCACGCTA 60.387 50.000 0.00 0.00 0.00 4.26
134 135 1.661197 CCAATTTTGCACGCACGCT 60.661 52.632 0.00 0.00 0.00 5.07
135 136 2.656807 CCCAATTTTGCACGCACGC 61.657 57.895 0.00 0.00 0.00 5.34
136 137 1.274798 GACCCAATTTTGCACGCACG 61.275 55.000 0.00 0.00 0.00 5.34
137 138 0.031994 AGACCCAATTTTGCACGCAC 59.968 50.000 0.00 0.00 0.00 5.34
138 139 1.268352 GTAGACCCAATTTTGCACGCA 59.732 47.619 0.00 0.00 0.00 5.24
139 140 1.727857 CGTAGACCCAATTTTGCACGC 60.728 52.381 0.00 0.00 0.00 5.34
140 141 1.727857 GCGTAGACCCAATTTTGCACG 60.728 52.381 0.00 0.00 0.00 5.34
141 142 1.727857 CGCGTAGACCCAATTTTGCAC 60.728 52.381 0.00 0.00 0.00 4.57
142 143 0.519519 CGCGTAGACCCAATTTTGCA 59.480 50.000 0.00 0.00 0.00 4.08
143 144 0.519961 ACGCGTAGACCCAATTTTGC 59.480 50.000 11.67 0.00 0.00 3.68
144 145 2.981400 AACGCGTAGACCCAATTTTG 57.019 45.000 14.46 0.00 0.00 2.44
145 146 3.004862 CCTAACGCGTAGACCCAATTTT 58.995 45.455 14.46 0.00 30.50 1.82
146 147 2.027837 ACCTAACGCGTAGACCCAATTT 60.028 45.455 14.46 0.00 30.50 1.82
147 148 1.551883 ACCTAACGCGTAGACCCAATT 59.448 47.619 14.46 0.00 30.50 2.32
148 149 1.134907 CACCTAACGCGTAGACCCAAT 60.135 52.381 14.46 0.00 30.50 3.16
149 150 0.244450 CACCTAACGCGTAGACCCAA 59.756 55.000 14.46 0.00 30.50 4.12
150 151 0.895100 ACACCTAACGCGTAGACCCA 60.895 55.000 14.46 0.00 30.50 4.51
151 152 1.094785 TACACCTAACGCGTAGACCC 58.905 55.000 14.46 0.00 30.50 4.46
152 153 1.740025 AGTACACCTAACGCGTAGACC 59.260 52.381 14.46 0.00 30.50 3.85
153 154 2.778659 CAGTACACCTAACGCGTAGAC 58.221 52.381 14.46 3.02 30.50 2.59
154 155 1.131126 GCAGTACACCTAACGCGTAGA 59.869 52.381 14.46 2.16 30.50 2.59
155 156 1.542544 GCAGTACACCTAACGCGTAG 58.457 55.000 14.46 10.44 0.00 3.51
156 157 0.171007 GGCAGTACACCTAACGCGTA 59.829 55.000 14.46 0.00 0.00 4.42
157 158 1.080298 GGCAGTACACCTAACGCGT 60.080 57.895 5.58 5.58 0.00 6.01
158 159 2.156446 CGGCAGTACACCTAACGCG 61.156 63.158 3.53 3.53 0.00 6.01
159 160 1.074872 GTCGGCAGTACACCTAACGC 61.075 60.000 0.00 0.00 0.00 4.84
160 161 0.457337 GGTCGGCAGTACACCTAACG 60.457 60.000 0.00 0.00 0.00 3.18
161 162 0.108472 GGGTCGGCAGTACACCTAAC 60.108 60.000 0.00 0.00 0.00 2.34
162 163 0.542467 TGGGTCGGCAGTACACCTAA 60.542 55.000 0.00 0.00 0.00 2.69
163 164 0.542467 TTGGGTCGGCAGTACACCTA 60.542 55.000 0.00 0.00 0.00 3.08
164 165 1.839747 TTGGGTCGGCAGTACACCT 60.840 57.895 0.00 0.00 0.00 4.00
165 166 1.670083 GTTGGGTCGGCAGTACACC 60.670 63.158 0.00 0.00 0.00 4.16
166 167 0.533308 TTGTTGGGTCGGCAGTACAC 60.533 55.000 0.00 0.00 0.00 2.90
167 168 0.180642 TTTGTTGGGTCGGCAGTACA 59.819 50.000 0.00 0.00 0.00 2.90
168 169 1.310904 TTTTGTTGGGTCGGCAGTAC 58.689 50.000 0.00 0.00 0.00 2.73
169 170 1.677052 GTTTTTGTTGGGTCGGCAGTA 59.323 47.619 0.00 0.00 0.00 2.74
170 171 0.458260 GTTTTTGTTGGGTCGGCAGT 59.542 50.000 0.00 0.00 0.00 4.40
171 172 0.457851 TGTTTTTGTTGGGTCGGCAG 59.542 50.000 0.00 0.00 0.00 4.85
172 173 0.895530 TTGTTTTTGTTGGGTCGGCA 59.104 45.000 0.00 0.00 0.00 5.69
173 174 1.566404 CTTGTTTTTGTTGGGTCGGC 58.434 50.000 0.00 0.00 0.00 5.54
174 175 1.804746 GCCTTGTTTTTGTTGGGTCGG 60.805 52.381 0.00 0.00 0.00 4.79
175 176 1.566404 GCCTTGTTTTTGTTGGGTCG 58.434 50.000 0.00 0.00 0.00 4.79
176 177 1.566404 CGCCTTGTTTTTGTTGGGTC 58.434 50.000 0.00 0.00 0.00 4.46
177 178 0.176910 CCGCCTTGTTTTTGTTGGGT 59.823 50.000 0.00 0.00 0.00 4.51
178 179 0.461961 TCCGCCTTGTTTTTGTTGGG 59.538 50.000 0.00 0.00 0.00 4.12
179 180 1.566404 GTCCGCCTTGTTTTTGTTGG 58.434 50.000 0.00 0.00 0.00 3.77
180 181 1.196200 CGTCCGCCTTGTTTTTGTTG 58.804 50.000 0.00 0.00 0.00 3.33
181 182 1.096416 TCGTCCGCCTTGTTTTTGTT 58.904 45.000 0.00 0.00 0.00 2.83
182 183 1.001815 CATCGTCCGCCTTGTTTTTGT 60.002 47.619 0.00 0.00 0.00 2.83
183 184 1.265635 TCATCGTCCGCCTTGTTTTTG 59.734 47.619 0.00 0.00 0.00 2.44
184 185 1.600023 TCATCGTCCGCCTTGTTTTT 58.400 45.000 0.00 0.00 0.00 1.94
185 186 1.737793 GATCATCGTCCGCCTTGTTTT 59.262 47.619 0.00 0.00 0.00 2.43
186 187 1.369625 GATCATCGTCCGCCTTGTTT 58.630 50.000 0.00 0.00 0.00 2.83
187 188 0.806102 CGATCATCGTCCGCCTTGTT 60.806 55.000 0.00 0.00 34.72 2.83
188 189 1.226974 CGATCATCGTCCGCCTTGT 60.227 57.895 0.00 0.00 34.72 3.16
189 190 1.065764 TCGATCATCGTCCGCCTTG 59.934 57.895 7.00 0.00 41.35 3.61
190 191 1.065928 GTCGATCATCGTCCGCCTT 59.934 57.895 7.00 0.00 41.35 4.35
191 192 2.722487 GTCGATCATCGTCCGCCT 59.278 61.111 7.00 0.00 41.35 5.52
192 193 2.726180 CGTCGATCATCGTCCGCC 60.726 66.667 7.00 0.00 41.35 6.13
193 194 2.726180 CCGTCGATCATCGTCCGC 60.726 66.667 7.00 0.00 41.35 5.54
194 195 1.368969 GACCGTCGATCATCGTCCG 60.369 63.158 7.00 10.54 41.35 4.79
195 196 1.368969 CGACCGTCGATCATCGTCC 60.369 63.158 16.03 0.00 43.74 4.79
196 197 1.640069 TCGACCGTCGATCATCGTC 59.360 57.895 19.51 0.00 44.82 4.20
197 198 3.803886 TCGACCGTCGATCATCGT 58.196 55.556 19.51 0.00 44.82 3.73
205 206 1.808390 GGATTTGGGTCGACCGTCG 60.808 63.158 27.68 14.94 44.64 5.12
206 207 1.808390 CGGATTTGGGTCGACCGTC 60.808 63.158 27.68 20.56 44.64 4.79
207 208 2.263540 CGGATTTGGGTCGACCGT 59.736 61.111 27.68 13.77 44.64 4.83
209 210 0.519961 CAAACGGATTTGGGTCGACC 59.480 55.000 27.04 27.04 41.39 4.79
217 218 0.165079 CGTCGACCCAAACGGATTTG 59.835 55.000 10.58 0.00 44.19 2.32
218 219 1.571215 GCGTCGACCCAAACGGATTT 61.571 55.000 10.58 0.00 39.24 2.17
219 220 2.030958 GCGTCGACCCAAACGGATT 61.031 57.895 10.58 0.00 39.24 3.01
220 221 2.433664 GCGTCGACCCAAACGGAT 60.434 61.111 10.58 0.00 39.24 4.18
223 224 3.332409 AACGCGTCGACCCAAACG 61.332 61.111 14.44 8.81 41.68 3.60
224 225 2.247267 CAACGCGTCGACCCAAAC 59.753 61.111 14.44 0.00 0.00 2.93
225 226 2.968156 CCAACGCGTCGACCCAAA 60.968 61.111 14.44 0.00 0.00 3.28
226 227 3.851845 CTCCAACGCGTCGACCCAA 62.852 63.158 14.44 0.00 0.00 4.12
227 228 4.351938 CTCCAACGCGTCGACCCA 62.352 66.667 14.44 0.00 0.00 4.51
229 230 4.353437 ACCTCCAACGCGTCGACC 62.353 66.667 14.44 1.77 0.00 4.79
230 231 3.103911 CACCTCCAACGCGTCGAC 61.104 66.667 14.44 5.18 0.00 4.20
233 234 2.209064 TAGAGCACCTCCAACGCGTC 62.209 60.000 14.44 0.00 0.00 5.19
234 235 1.812686 TTAGAGCACCTCCAACGCGT 61.813 55.000 5.58 5.58 0.00 6.01
235 236 1.080093 TTAGAGCACCTCCAACGCG 60.080 57.895 3.53 3.53 0.00 6.01
236 237 0.037232 AGTTAGAGCACCTCCAACGC 60.037 55.000 0.00 0.00 37.23 4.84
237 238 2.416972 GGTAGTTAGAGCACCTCCAACG 60.417 54.545 0.00 0.00 37.23 4.10
238 239 2.832733 AGGTAGTTAGAGCACCTCCAAC 59.167 50.000 0.00 0.00 38.29 3.77
239 240 3.185880 AGGTAGTTAGAGCACCTCCAA 57.814 47.619 0.00 0.00 38.29 3.53
240 241 2.921834 AGGTAGTTAGAGCACCTCCA 57.078 50.000 0.00 0.00 38.29 3.86
241 242 5.383476 TGTATAGGTAGTTAGAGCACCTCC 58.617 45.833 0.00 0.00 41.78 4.30
242 243 6.956202 TTGTATAGGTAGTTAGAGCACCTC 57.044 41.667 0.00 0.00 41.78 3.85
243 244 6.183360 GCTTTGTATAGGTAGTTAGAGCACCT 60.183 42.308 0.00 0.00 44.79 4.00
244 245 5.984323 GCTTTGTATAGGTAGTTAGAGCACC 59.016 44.000 0.00 0.00 0.00 5.01
245 246 6.570692 TGCTTTGTATAGGTAGTTAGAGCAC 58.429 40.000 0.00 0.00 32.14 4.40
246 247 6.785337 TGCTTTGTATAGGTAGTTAGAGCA 57.215 37.500 0.00 0.00 34.42 4.26
247 248 7.385478 GGATTGCTTTGTATAGGTAGTTAGAGC 59.615 40.741 0.00 0.00 0.00 4.09
248 249 7.595502 CGGATTGCTTTGTATAGGTAGTTAGAG 59.404 40.741 0.00 0.00 0.00 2.43
249 250 7.431249 CGGATTGCTTTGTATAGGTAGTTAGA 58.569 38.462 0.00 0.00 0.00 2.10
250 251 6.145696 GCGGATTGCTTTGTATAGGTAGTTAG 59.854 42.308 0.00 0.00 41.73 2.34
251 252 5.987347 GCGGATTGCTTTGTATAGGTAGTTA 59.013 40.000 0.00 0.00 41.73 2.24
252 253 4.814771 GCGGATTGCTTTGTATAGGTAGTT 59.185 41.667 0.00 0.00 41.73 2.24
253 254 4.377897 GCGGATTGCTTTGTATAGGTAGT 58.622 43.478 0.00 0.00 41.73 2.73
254 255 3.746492 GGCGGATTGCTTTGTATAGGTAG 59.254 47.826 0.00 0.00 45.43 3.18
255 256 3.389983 AGGCGGATTGCTTTGTATAGGTA 59.610 43.478 0.00 0.00 45.43 3.08
256 257 2.172717 AGGCGGATTGCTTTGTATAGGT 59.827 45.455 0.00 0.00 45.43 3.08
257 258 2.808543 GAGGCGGATTGCTTTGTATAGG 59.191 50.000 0.00 0.00 45.43 2.57
258 259 2.808543 GGAGGCGGATTGCTTTGTATAG 59.191 50.000 0.00 0.00 45.43 1.31
259 260 2.171659 TGGAGGCGGATTGCTTTGTATA 59.828 45.455 0.00 0.00 45.43 1.47
260 261 1.064758 TGGAGGCGGATTGCTTTGTAT 60.065 47.619 0.00 0.00 45.43 2.29
261 262 0.326595 TGGAGGCGGATTGCTTTGTA 59.673 50.000 0.00 0.00 45.43 2.41
262 263 1.074775 TGGAGGCGGATTGCTTTGT 59.925 52.632 0.00 0.00 45.43 2.83
263 264 1.508088 GTGGAGGCGGATTGCTTTG 59.492 57.895 0.00 0.00 45.43 2.77
264 265 2.040544 CGTGGAGGCGGATTGCTTT 61.041 57.895 0.00 0.00 45.43 3.51
265 266 2.436646 CGTGGAGGCGGATTGCTT 60.437 61.111 0.00 0.00 45.43 3.91
268 269 2.892425 GAGCGTGGAGGCGGATTG 60.892 66.667 0.00 0.00 38.18 2.67
269 270 3.077556 AGAGCGTGGAGGCGGATT 61.078 61.111 0.00 0.00 38.18 3.01
270 271 3.842923 CAGAGCGTGGAGGCGGAT 61.843 66.667 0.00 0.00 38.18 4.18
275 276 4.463879 CCTGGCAGAGCGTGGAGG 62.464 72.222 17.94 0.00 0.00 4.30
276 277 3.655810 GACCTGGCAGAGCGTGGAG 62.656 68.421 17.94 0.00 0.00 3.86
277 278 3.695606 GACCTGGCAGAGCGTGGA 61.696 66.667 17.94 0.00 0.00 4.02
283 284 1.961277 AAAACGCGACCTGGCAGAG 60.961 57.895 17.94 8.80 0.00 3.35
284 285 2.110213 AAAACGCGACCTGGCAGA 59.890 55.556 17.94 0.00 0.00 4.26
285 286 1.577328 ATCAAAACGCGACCTGGCAG 61.577 55.000 15.93 7.75 0.00 4.85
286 287 1.573829 GATCAAAACGCGACCTGGCA 61.574 55.000 15.93 0.00 0.00 4.92
287 288 1.134694 GATCAAAACGCGACCTGGC 59.865 57.895 15.93 0.00 0.00 4.85
288 289 1.156736 AAGATCAAAACGCGACCTGG 58.843 50.000 15.93 0.00 0.00 4.45
289 290 2.480419 AGAAAGATCAAAACGCGACCTG 59.520 45.455 15.93 6.41 0.00 4.00
290 291 2.767505 AGAAAGATCAAAACGCGACCT 58.232 42.857 15.93 0.00 0.00 3.85
291 292 3.181523 GGTAGAAAGATCAAAACGCGACC 60.182 47.826 15.93 0.00 0.00 4.79
292 293 3.430895 TGGTAGAAAGATCAAAACGCGAC 59.569 43.478 15.93 0.00 0.00 5.19
293 294 3.655486 TGGTAGAAAGATCAAAACGCGA 58.345 40.909 15.93 0.00 0.00 5.87
294 295 3.725010 GCTGGTAGAAAGATCAAAACGCG 60.725 47.826 3.53 3.53 0.00 6.01
295 296 3.426292 GGCTGGTAGAAAGATCAAAACGC 60.426 47.826 0.00 0.00 0.00 4.84
296 297 3.751175 TGGCTGGTAGAAAGATCAAAACG 59.249 43.478 0.00 0.00 0.00 3.60
297 298 5.904362 ATGGCTGGTAGAAAGATCAAAAC 57.096 39.130 0.00 0.00 0.00 2.43
298 299 8.271458 TGTATATGGCTGGTAGAAAGATCAAAA 58.729 33.333 0.00 0.00 0.00 2.44
299 300 7.801104 TGTATATGGCTGGTAGAAAGATCAAA 58.199 34.615 0.00 0.00 0.00 2.69
300 301 7.373617 TGTATATGGCTGGTAGAAAGATCAA 57.626 36.000 0.00 0.00 0.00 2.57
301 302 6.994421 TGTATATGGCTGGTAGAAAGATCA 57.006 37.500 0.00 0.00 0.00 2.92
302 303 6.876257 CCTTGTATATGGCTGGTAGAAAGATC 59.124 42.308 0.00 0.00 0.00 2.75
303 304 6.745474 GCCTTGTATATGGCTGGTAGAAAGAT 60.745 42.308 8.89 0.00 42.32 2.40
304 305 5.454755 GCCTTGTATATGGCTGGTAGAAAGA 60.455 44.000 8.89 0.00 42.32 2.52
305 306 4.757149 GCCTTGTATATGGCTGGTAGAAAG 59.243 45.833 8.89 0.00 42.32 2.62
306 307 4.445735 GGCCTTGTATATGGCTGGTAGAAA 60.446 45.833 14.73 0.00 44.37 2.52
307 308 3.072476 GGCCTTGTATATGGCTGGTAGAA 59.928 47.826 14.73 0.00 44.37 2.10
308 309 2.637872 GGCCTTGTATATGGCTGGTAGA 59.362 50.000 14.73 0.00 44.37 2.59
309 310 2.639839 AGGCCTTGTATATGGCTGGTAG 59.360 50.000 14.73 0.00 44.37 3.18
310 311 2.701551 AGGCCTTGTATATGGCTGGTA 58.298 47.619 14.73 0.00 44.37 3.25
311 312 1.522900 AGGCCTTGTATATGGCTGGT 58.477 50.000 14.73 0.00 44.37 4.00
312 313 2.664402 AAGGCCTTGTATATGGCTGG 57.336 50.000 19.73 0.00 44.37 4.85
313 314 4.718961 AGTTAAGGCCTTGTATATGGCTG 58.281 43.478 28.77 0.00 44.37 4.85
314 315 5.388599 AAGTTAAGGCCTTGTATATGGCT 57.611 39.130 28.77 10.51 44.37 4.75
315 316 7.501225 TCTTAAAGTTAAGGCCTTGTATATGGC 59.499 37.037 28.77 7.76 44.26 4.40
316 317 8.974060 TCTTAAAGTTAAGGCCTTGTATATGG 57.026 34.615 28.77 11.52 40.35 2.74
318 319 9.628500 CCTTCTTAAAGTTAAGGCCTTGTATAT 57.372 33.333 28.77 13.46 40.35 0.86
319 320 8.050930 CCCTTCTTAAAGTTAAGGCCTTGTATA 58.949 37.037 28.77 4.66 40.35 1.47
320 321 6.890268 CCCTTCTTAAAGTTAAGGCCTTGTAT 59.110 38.462 28.77 10.26 40.35 2.29
321 322 6.243148 CCCTTCTTAAAGTTAAGGCCTTGTA 58.757 40.000 28.77 13.09 40.35 2.41
322 323 5.077564 CCCTTCTTAAAGTTAAGGCCTTGT 58.922 41.667 28.77 9.66 40.35 3.16
323 324 4.082190 GCCCTTCTTAAAGTTAAGGCCTTG 60.082 45.833 28.77 8.60 40.35 3.61
324 325 4.087182 GCCCTTCTTAAAGTTAAGGCCTT 58.913 43.478 24.18 24.18 40.35 4.35
325 326 3.333980 AGCCCTTCTTAAAGTTAAGGCCT 59.666 43.478 0.00 0.00 40.35 5.19
326 327 3.698289 AGCCCTTCTTAAAGTTAAGGCC 58.302 45.455 10.21 0.00 40.35 5.19
327 328 5.336531 GGAAAGCCCTTCTTAAAGTTAAGGC 60.337 44.000 10.21 7.17 40.35 4.35
328 329 5.773176 TGGAAAGCCCTTCTTAAAGTTAAGG 59.227 40.000 10.21 0.00 39.63 2.69
329 330 6.570571 GCTGGAAAGCCCTTCTTAAAGTTAAG 60.571 42.308 4.70 4.70 37.67 1.85
330 331 5.243060 GCTGGAAAGCCCTTCTTAAAGTTAA 59.757 40.000 0.00 0.00 33.88 2.01
331 332 4.765339 GCTGGAAAGCCCTTCTTAAAGTTA 59.235 41.667 0.00 0.00 33.88 2.24
332 333 3.574396 GCTGGAAAGCCCTTCTTAAAGTT 59.426 43.478 0.00 0.00 33.88 2.66
333 334 3.157881 GCTGGAAAGCCCTTCTTAAAGT 58.842 45.455 0.00 0.00 33.88 2.66
334 335 3.057245 GTGCTGGAAAGCCCTTCTTAAAG 60.057 47.826 0.00 0.00 33.88 1.85
335 336 2.890945 GTGCTGGAAAGCCCTTCTTAAA 59.109 45.455 0.00 0.00 33.88 1.52
336 337 2.514803 GTGCTGGAAAGCCCTTCTTAA 58.485 47.619 0.00 0.00 33.88 1.85
337 338 1.610624 CGTGCTGGAAAGCCCTTCTTA 60.611 52.381 0.00 0.00 33.88 2.10
338 339 0.890996 CGTGCTGGAAAGCCCTTCTT 60.891 55.000 0.00 0.00 36.34 2.52
339 340 1.302832 CGTGCTGGAAAGCCCTTCT 60.303 57.895 0.00 0.00 34.17 2.85
340 341 2.335712 CCGTGCTGGAAAGCCCTTC 61.336 63.158 0.00 0.00 42.00 3.46
341 342 2.282462 CCGTGCTGGAAAGCCCTT 60.282 61.111 0.00 0.00 42.00 3.95
342 343 3.249189 TCCGTGCTGGAAAGCCCT 61.249 61.111 0.00 0.00 46.38 5.19
350 351 2.028420 TCAATGATTCTCCGTGCTGG 57.972 50.000 0.00 0.00 40.09 4.85
351 352 2.096496 GGTTCAATGATTCTCCGTGCTG 59.904 50.000 0.00 0.00 0.00 4.41
352 353 2.026822 AGGTTCAATGATTCTCCGTGCT 60.027 45.455 0.00 0.00 0.00 4.40
353 354 2.096496 CAGGTTCAATGATTCTCCGTGC 59.904 50.000 0.00 0.00 0.00 5.34
354 355 2.679837 CCAGGTTCAATGATTCTCCGTG 59.320 50.000 0.00 0.00 0.00 4.94
355 356 2.356125 CCCAGGTTCAATGATTCTCCGT 60.356 50.000 0.00 0.00 0.00 4.69
356 357 2.292267 CCCAGGTTCAATGATTCTCCG 58.708 52.381 0.00 0.00 0.00 4.63
357 358 3.372440 ACCCAGGTTCAATGATTCTCC 57.628 47.619 0.00 0.00 0.00 3.71
369 370 0.250597 GCTACGGTTGAACCCAGGTT 60.251 55.000 9.08 0.56 41.54 3.50
370 371 1.373812 GCTACGGTTGAACCCAGGT 59.626 57.895 9.08 3.68 33.75 4.00
371 372 1.376812 GGCTACGGTTGAACCCAGG 60.377 63.158 9.08 0.00 33.75 4.45
372 373 0.953960 GTGGCTACGGTTGAACCCAG 60.954 60.000 9.08 7.48 33.75 4.45
373 374 1.071814 GTGGCTACGGTTGAACCCA 59.928 57.895 9.08 0.00 33.75 4.51
374 375 0.953960 CTGTGGCTACGGTTGAACCC 60.954 60.000 9.08 0.00 33.75 4.11
375 376 0.250166 ACTGTGGCTACGGTTGAACC 60.250 55.000 9.18 3.76 43.85 3.62
376 377 3.300711 ACTGTGGCTACGGTTGAAC 57.699 52.632 9.18 0.00 43.85 3.18
471 472 6.016610 ACTCTAGTTAGATCTCCTGATTTCGC 60.017 42.308 0.00 0.00 32.19 4.70
474 475 7.069331 CCACACTCTAGTTAGATCTCCTGATTT 59.931 40.741 0.00 0.00 32.19 2.17
538 539 1.427368 TGTCAAACAGCAGGGGGTAAT 59.573 47.619 0.00 0.00 0.00 1.89
542 543 2.026641 CATATGTCAAACAGCAGGGGG 58.973 52.381 0.00 0.00 0.00 5.40
830 837 2.802247 GCTGCCACAGGAAAATTTTGAC 59.198 45.455 8.47 1.09 31.21 3.18
986 994 2.268076 GCCATCCCAACACAACGCT 61.268 57.895 0.00 0.00 0.00 5.07
1048 1056 1.152756 GGAAAGTGTGGCACCAGGT 60.153 57.895 16.26 0.00 34.49 4.00
1263 1274 1.078848 GCTTGACCTGACCATCGCT 60.079 57.895 0.00 0.00 0.00 4.93
1358 1369 0.736325 ACGACAGCGGCAACTATGAC 60.736 55.000 1.45 0.00 43.17 3.06
1362 1373 0.947180 GGAAACGACAGCGGCAACTA 60.947 55.000 1.45 0.00 43.17 2.24
1452 1464 2.798283 ACAACACCATAGTTCAACGACG 59.202 45.455 0.00 0.00 0.00 5.12
1509 1521 2.203153 AAACCCACTGCGTTCGCT 60.203 55.556 17.63 0.00 0.00 4.93
1651 1664 5.289510 AGGGGTCATCTCTGGTAGTAAAAT 58.710 41.667 0.00 0.00 0.00 1.82
1910 1927 3.686726 GGACAAGATTCGCTCTCATTGTT 59.313 43.478 0.00 0.00 31.03 2.83
1988 2005 1.535462 GTGTCCCAACGGTCAGATTTG 59.465 52.381 0.00 0.00 0.00 2.32
2083 2100 2.268107 ACCGTTTATGGTTGTAGGGGA 58.732 47.619 0.00 0.00 39.99 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.