Multiple sequence alignment - TraesCS5A01G098000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G098000 chr5A 100.000 4204 0 0 1 4204 139485889 139481686 0.000000e+00 7764.0
1 TraesCS5A01G098000 chr5A 100.000 118 0 0 1794 1911 139483955 139483838 7.080000e-53 219.0
2 TraesCS5A01G098000 chr5A 100.000 118 0 0 1935 2052 139484096 139483979 7.080000e-53 219.0
3 TraesCS5A01G098000 chr2A 99.471 2270 12 0 1935 4204 256199684 256201953 0.000000e+00 4126.0
4 TraesCS5A01G098000 chr2A 99.564 1147 5 0 765 1911 256198655 256199801 0.000000e+00 2091.0
5 TraesCS5A01G098000 chr2A 99.805 512 1 0 781 1292 668073820 668074331 0.000000e+00 941.0
6 TraesCS5A01G098000 chr2A 91.483 317 16 5 2 317 653856459 653856153 3.880000e-115 425.0
7 TraesCS5A01G098000 chr2A 90.432 324 21 4 1 324 43004225 43004538 6.500000e-113 418.0
8 TraesCS5A01G098000 chr2A 86.486 185 17 1 3285 3469 257093341 257093165 3.320000e-46 196.0
9 TraesCS5A01G098000 chr2A 85.417 192 19 3 2 193 211693148 211692966 1.540000e-44 191.0
10 TraesCS5A01G098000 chr3B 99.583 2157 9 0 2048 4204 536903647 536901491 0.000000e+00 3934.0
11 TraesCS5A01G098000 chr3B 99.518 622 3 0 1289 1910 536904387 536903766 0.000000e+00 1133.0
12 TraesCS5A01G098000 chr3B 98.864 528 4 1 767 1292 787251617 787251090 0.000000e+00 941.0
13 TraesCS5A01G098000 chr3B 97.889 521 8 1 775 1292 1270558 1270038 0.000000e+00 898.0
14 TraesCS5A01G098000 chr3B 89.884 346 31 4 3586 3929 508221415 508221758 3.860000e-120 442.0
15 TraesCS5A01G098000 chr3B 92.089 316 15 4 2 316 106701131 106701437 1.790000e-118 436.0
16 TraesCS5A01G098000 chr3B 92.491 293 18 4 24 314 754619692 754619982 2.340000e-112 416.0
17 TraesCS5A01G098000 chr3B 89.423 208 18 1 1370 1573 429179923 429180130 4.170000e-65 259.0
18 TraesCS5A01G098000 chr3B 99.145 117 1 0 1935 2051 536903882 536903766 1.180000e-50 211.0
19 TraesCS5A01G098000 chr2B 96.694 2299 43 18 1935 4204 150351518 150349224 0.000000e+00 3794.0
20 TraesCS5A01G098000 chr2B 98.867 618 7 0 1289 1906 150352023 150351406 0.000000e+00 1103.0
21 TraesCS5A01G098000 chr2B 90.230 348 30 4 3586 3931 69406059 69405714 6.410000e-123 451.0
22 TraesCS5A01G098000 chr2B 89.368 348 33 4 3586 3931 278849746 278850091 6.450000e-118 435.0
23 TraesCS5A01G098000 chr2B 84.298 242 17 7 1568 1788 793125443 793125684 2.550000e-52 217.0
24 TraesCS5A01G098000 chr2B 93.519 108 7 0 1786 1893 357169218 357169325 1.210000e-35 161.0
25 TraesCS5A01G098000 chr2B 94.000 100 6 0 1935 2034 357169226 357169325 7.280000e-33 152.0
26 TraesCS5A01G098000 chr4B 99.431 527 3 0 766 1292 429597350 429597876 0.000000e+00 957.0
27 TraesCS5A01G098000 chr6B 98.866 529 6 0 764 1292 21194069 21194597 0.000000e+00 944.0
28 TraesCS5A01G098000 chr6B 86.842 228 21 6 1570 1788 282851039 282851266 3.250000e-61 246.0
29 TraesCS5A01G098000 chr6B 83.471 242 19 7 1568 1788 690993465 690993224 5.510000e-49 206.0
30 TraesCS5A01G098000 chr6B 89.815 108 9 1 1786 1893 520330840 520330945 2.040000e-28 137.0
31 TraesCS5A01G098000 chr6B 90.000 100 8 1 1935 2034 520330848 520330945 1.230000e-25 128.0
32 TraesCS5A01G098000 chr6B 79.054 148 6 7 1975 2110 547719953 547720087 1.250000e-10 78.7
33 TraesCS5A01G098000 chr6B 82.192 73 3 1 2048 2110 520330946 520331018 2.000000e-03 54.7
34 TraesCS5A01G098000 chr3A 98.672 527 6 1 767 1292 363951743 363952269 0.000000e+00 933.0
35 TraesCS5A01G098000 chr3A 88.675 415 45 2 3519 3931 713911583 713911997 4.850000e-139 505.0
36 TraesCS5A01G098000 chr3A 89.904 208 17 1 1370 1573 117114177 117114384 8.960000e-67 265.0
37 TraesCS5A01G098000 chr3A 87.907 215 20 2 1370 1578 116675216 116675002 9.030000e-62 248.0
38 TraesCS5A01G098000 chr3A 88.304 171 11 2 3285 3454 56217296 56217134 3.320000e-46 196.0
39 TraesCS5A01G098000 chr4A 98.485 528 7 1 766 1292 95155655 95156182 0.000000e+00 929.0
40 TraesCS5A01G098000 chr4A 89.749 517 33 8 2789 3289 563254458 563254970 0.000000e+00 643.0
41 TraesCS5A01G098000 chr4A 89.122 524 36 9 2783 3289 563294120 563294639 2.130000e-177 632.0
42 TraesCS5A01G098000 chr4A 90.029 341 32 2 3586 3924 45945155 45944815 1.390000e-119 440.0
43 TraesCS5A01G098000 chr4A 90.909 209 14 3 1370 1573 739703540 739703332 4.140000e-70 276.0
44 TraesCS5A01G098000 chr4A 90.909 209 14 3 1370 1573 742097431 742097223 4.140000e-70 276.0
45 TraesCS5A01G098000 chr4A 97.222 36 1 0 459 494 739497687 739497652 1.260000e-05 62.1
46 TraesCS5A01G098000 chr6A 97.897 523 11 0 770 1292 393232636 393233158 0.000000e+00 905.0
47 TraesCS5A01G098000 chr6A 79.638 442 47 20 1368 1787 314315209 314314789 1.150000e-70 278.0
48 TraesCS5A01G098000 chr6A 97.674 43 0 1 1783 1825 314314752 314314711 5.830000e-09 73.1
49 TraesCS5A01G098000 chr6A 97.500 40 1 0 1786 1825 346136832 346136871 7.540000e-08 69.4
50 TraesCS5A01G098000 chr6A 100.000 32 0 0 1935 1966 314314742 314314711 4.540000e-05 60.2
51 TraesCS5A01G098000 chr6A 100.000 32 0 0 1935 1966 346136840 346136871 4.540000e-05 60.2
52 TraesCS5A01G098000 chr2D 89.219 640 31 8 2665 3269 612529173 612529809 0.000000e+00 765.0
53 TraesCS5A01G098000 chr1D 86.988 684 45 11 2632 3289 44268800 44268135 0.000000e+00 730.0
54 TraesCS5A01G098000 chr1D 86.715 685 46 8 2632 3289 43830501 43829835 0.000000e+00 719.0
55 TraesCS5A01G098000 chr1D 86.443 686 42 15 2632 3289 44167516 44166854 0.000000e+00 704.0
56 TraesCS5A01G098000 chr1D 85.714 602 43 7 2632 3205 44149379 44148793 2.800000e-166 595.0
57 TraesCS5A01G098000 chr1D 90.517 348 31 2 3586 3931 30287518 30287171 3.830000e-125 459.0
58 TraesCS5A01G098000 chr1D 92.491 293 15 6 24 313 38562793 38563081 3.020000e-111 412.0
59 TraesCS5A01G098000 chr1D 89.796 294 22 5 2345 2632 43831238 43830947 1.850000e-98 370.0
60 TraesCS5A01G098000 chr1D 89.796 294 22 3 2345 2632 44149992 44149701 1.850000e-98 370.0
61 TraesCS5A01G098000 chr1D 89.116 294 24 3 2345 2632 44541615 44541324 4.000000e-95 359.0
62 TraesCS5A01G098000 chr4D 86.696 684 47 17 2632 3289 207696381 207697046 0.000000e+00 719.0
63 TraesCS5A01G098000 chr4D 92.517 294 14 3 2345 2632 207695704 207695995 8.410000e-112 414.0
64 TraesCS5A01G098000 chr4D 84.615 91 10 4 480 569 439682112 439682199 2.080000e-13 87.9
65 TraesCS5A01G098000 chr1A 84.515 691 56 13 2632 3289 44327636 44326964 1.650000e-178 636.0
66 TraesCS5A01G098000 chr1A 84.538 692 54 13 2632 3289 44357872 44357200 1.650000e-178 636.0
67 TraesCS5A01G098000 chr1A 91.497 294 17 3 2345 2632 44328318 44328027 8.470000e-107 398.0
68 TraesCS5A01G098000 chr1A 91.497 294 17 3 2345 2632 44358554 44358263 8.470000e-107 398.0
69 TraesCS5A01G098000 chr7B 92.283 311 15 3 2 312 665236816 665237117 2.320000e-117 433.0
70 TraesCS5A01G098000 chr7B 83.471 242 19 7 1568 1788 232752579 232752820 5.510000e-49 206.0
71 TraesCS5A01G098000 chr7B 93.333 60 4 0 1975 2034 726105784 726105725 5.790000e-14 89.8
72 TraesCS5A01G098000 chr7B 93.333 60 4 0 1834 1893 726105784 726105725 5.790000e-14 89.8
73 TraesCS5A01G098000 chr5B 91.277 321 16 6 2 319 674376775 674376464 1.080000e-115 427.0
74 TraesCS5A01G098000 chr5B 83.598 378 36 12 351 704 137677611 137677236 8.710000e-87 331.0
75 TraesCS5A01G098000 chr5B 90.909 209 14 3 1370 1573 92454969 92455177 4.140000e-70 276.0
76 TraesCS5A01G098000 chr5B 84.298 242 17 7 1568 1788 710174378 710174137 2.550000e-52 217.0
77 TraesCS5A01G098000 chr5B 93.333 60 4 0 1975 2034 509686835 509686776 5.790000e-14 89.8
78 TraesCS5A01G098000 chr5B 93.333 60 4 0 1834 1893 509686835 509686776 5.790000e-14 89.8
79 TraesCS5A01G098000 chrUn 91.456 316 17 4 2 316 379959502 379959196 3.880000e-115 425.0
80 TraesCS5A01G098000 chr7A 90.536 317 21 3 1 317 116601101 116601408 1.090000e-110 411.0
81 TraesCS5A01G098000 chr7A 89.952 209 16 3 1370 1573 577492358 577492566 8.960000e-67 265.0
82 TraesCS5A01G098000 chr7A 84.298 242 17 7 1568 1788 87022656 87022415 2.550000e-52 217.0
83 TraesCS5A01G098000 chr5D 84.750 400 34 12 351 731 124909977 124909586 3.970000e-100 375.0
84 TraesCS5A01G098000 chr6D 87.821 156 17 2 3314 3469 276909200 276909047 9.280000e-42 182.0
85 TraesCS5A01G098000 chr6D 100.000 30 0 0 474 503 381961809 381961780 5.870000e-04 56.5
86 TraesCS5A01G098000 chr3D 81.383 188 10 7 1935 2110 505789092 505788918 3.410000e-26 130.0
87 TraesCS5A01G098000 chr7D 93.333 60 4 0 1975 2034 53680936 53680877 5.790000e-14 89.8
88 TraesCS5A01G098000 chr7D 93.333 60 4 0 1834 1893 53680936 53680877 5.790000e-14 89.8
89 TraesCS5A01G098000 chr1B 86.441 59 4 4 450 507 138854737 138854682 1.260000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G098000 chr5A 139481686 139485889 4203 True 2734.000000 7764 100.000000 1 4204 3 chr5A.!!$R1 4203
1 TraesCS5A01G098000 chr2A 256198655 256201953 3298 False 3108.500000 4126 99.517500 765 4204 2 chr2A.!!$F3 3439
2 TraesCS5A01G098000 chr2A 668073820 668074331 511 False 941.000000 941 99.805000 781 1292 1 chr2A.!!$F2 511
3 TraesCS5A01G098000 chr3B 536901491 536904387 2896 True 1759.333333 3934 99.415333 1289 4204 3 chr3B.!!$R3 2915
4 TraesCS5A01G098000 chr3B 787251090 787251617 527 True 941.000000 941 98.864000 767 1292 1 chr3B.!!$R2 525
5 TraesCS5A01G098000 chr3B 1270038 1270558 520 True 898.000000 898 97.889000 775 1292 1 chr3B.!!$R1 517
6 TraesCS5A01G098000 chr2B 150349224 150352023 2799 True 2448.500000 3794 97.780500 1289 4204 2 chr2B.!!$R2 2915
7 TraesCS5A01G098000 chr4B 429597350 429597876 526 False 957.000000 957 99.431000 766 1292 1 chr4B.!!$F1 526
8 TraesCS5A01G098000 chr6B 21194069 21194597 528 False 944.000000 944 98.866000 764 1292 1 chr6B.!!$F1 528
9 TraesCS5A01G098000 chr3A 363951743 363952269 526 False 933.000000 933 98.672000 767 1292 1 chr3A.!!$F2 525
10 TraesCS5A01G098000 chr4A 95155655 95156182 527 False 929.000000 929 98.485000 766 1292 1 chr4A.!!$F1 526
11 TraesCS5A01G098000 chr4A 563254458 563254970 512 False 643.000000 643 89.749000 2789 3289 1 chr4A.!!$F2 500
12 TraesCS5A01G098000 chr4A 563294120 563294639 519 False 632.000000 632 89.122000 2783 3289 1 chr4A.!!$F3 506
13 TraesCS5A01G098000 chr6A 393232636 393233158 522 False 905.000000 905 97.897000 770 1292 1 chr6A.!!$F1 522
14 TraesCS5A01G098000 chr2D 612529173 612529809 636 False 765.000000 765 89.219000 2665 3269 1 chr2D.!!$F1 604
15 TraesCS5A01G098000 chr1D 44268135 44268800 665 True 730.000000 730 86.988000 2632 3289 1 chr1D.!!$R3 657
16 TraesCS5A01G098000 chr1D 44166854 44167516 662 True 704.000000 704 86.443000 2632 3289 1 chr1D.!!$R2 657
17 TraesCS5A01G098000 chr1D 43829835 43831238 1403 True 544.500000 719 88.255500 2345 3289 2 chr1D.!!$R5 944
18 TraesCS5A01G098000 chr1D 44148793 44149992 1199 True 482.500000 595 87.755000 2345 3205 2 chr1D.!!$R6 860
19 TraesCS5A01G098000 chr4D 207695704 207697046 1342 False 566.500000 719 89.606500 2345 3289 2 chr4D.!!$F2 944
20 TraesCS5A01G098000 chr1A 44326964 44328318 1354 True 517.000000 636 88.006000 2345 3289 2 chr1A.!!$R1 944
21 TraesCS5A01G098000 chr1A 44357200 44358554 1354 True 517.000000 636 88.017500 2345 3289 2 chr1A.!!$R2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.0 0.0 0.00 4.02 F
263 264 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.0 0.0 0.0 0.00 3.51 F
265 266 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.0 0.0 0.0 0.00 3.51 F
266 267 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.0 0.0 0.0 0.00 3.55 F
1954 2099 0.250234 TGCATCCAGTACACCTGCTC 59.750 55.0 0.0 0.0 40.06 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2077 2.479566 CAGGTGTACTGGATGCAGTT 57.520 50.0 25.65 9.64 43.70 3.16 R
1976 2121 5.972935 TGCGAATTACCTATGAAACTCTGA 58.027 37.5 0.00 0.00 0.00 3.27 R
1988 2133 6.061441 TGACAATCCATTATGCGAATTACCT 58.939 36.0 0.00 0.00 0.00 3.08 R
1989 2134 6.312399 TGACAATCCATTATGCGAATTACC 57.688 37.5 0.00 0.00 0.00 2.85 R
3944 4781 0.747283 GCATGTAGGCTCTGCTGCTT 60.747 55.0 0.00 0.00 33.15 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.470057 AACCCATGGTTGAGTTGGTT 57.530 45.000 11.73 1.81 45.07 3.67
28 29 3.603965 AACCCATGGTTGAGTTGGTTA 57.396 42.857 11.73 0.00 45.07 2.85
29 30 3.154827 ACCCATGGTTGAGTTGGTTAG 57.845 47.619 11.73 0.00 27.29 2.34
30 31 2.225017 ACCCATGGTTGAGTTGGTTAGG 60.225 50.000 11.73 0.00 27.29 2.69
31 32 2.225017 CCCATGGTTGAGTTGGTTAGGT 60.225 50.000 11.73 0.00 0.00 3.08
32 33 2.819608 CCATGGTTGAGTTGGTTAGGTG 59.180 50.000 2.57 0.00 0.00 4.00
33 34 2.649531 TGGTTGAGTTGGTTAGGTGG 57.350 50.000 0.00 0.00 0.00 4.61
34 35 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
35 36 2.714250 TGGTTGAGTTGGTTAGGTGGAT 59.286 45.455 0.00 0.00 0.00 3.41
36 37 3.911260 TGGTTGAGTTGGTTAGGTGGATA 59.089 43.478 0.00 0.00 0.00 2.59
37 38 4.019681 TGGTTGAGTTGGTTAGGTGGATAG 60.020 45.833 0.00 0.00 0.00 2.08
38 39 4.019591 GGTTGAGTTGGTTAGGTGGATAGT 60.020 45.833 0.00 0.00 0.00 2.12
39 40 4.819105 TGAGTTGGTTAGGTGGATAGTG 57.181 45.455 0.00 0.00 0.00 2.74
40 41 3.055385 TGAGTTGGTTAGGTGGATAGTGC 60.055 47.826 0.00 0.00 0.00 4.40
41 42 2.238898 AGTTGGTTAGGTGGATAGTGCC 59.761 50.000 0.00 0.00 0.00 5.01
42 43 1.959710 TGGTTAGGTGGATAGTGCCA 58.040 50.000 0.00 0.00 35.02 4.92
43 44 2.487775 TGGTTAGGTGGATAGTGCCAT 58.512 47.619 0.00 0.00 40.68 4.40
44 45 3.659841 TGGTTAGGTGGATAGTGCCATA 58.340 45.455 0.00 0.00 40.68 2.74
45 46 3.646162 TGGTTAGGTGGATAGTGCCATAG 59.354 47.826 0.00 0.00 40.68 2.23
46 47 3.646637 GGTTAGGTGGATAGTGCCATAGT 59.353 47.826 0.00 0.00 40.68 2.12
47 48 4.503296 GGTTAGGTGGATAGTGCCATAGTG 60.503 50.000 0.00 0.00 40.68 2.74
48 49 2.050144 AGGTGGATAGTGCCATAGTGG 58.950 52.381 0.00 0.00 40.68 4.00
49 50 1.768870 GGTGGATAGTGCCATAGTGGT 59.231 52.381 0.00 0.00 40.46 4.16
50 51 2.969950 GGTGGATAGTGCCATAGTGGTA 59.030 50.000 0.00 0.00 40.46 3.25
51 52 3.583086 GGTGGATAGTGCCATAGTGGTAT 59.417 47.826 0.00 0.00 40.46 2.73
52 53 4.322801 GGTGGATAGTGCCATAGTGGTATC 60.323 50.000 0.00 0.00 40.46 2.24
53 54 3.838317 TGGATAGTGCCATAGTGGTATCC 59.162 47.826 13.33 13.33 40.70 2.59
54 55 3.197983 GGATAGTGCCATAGTGGTATCCC 59.802 52.174 10.73 0.00 37.27 3.85
55 56 1.435256 AGTGCCATAGTGGTATCCCC 58.565 55.000 0.00 0.00 40.46 4.81
56 57 1.136828 GTGCCATAGTGGTATCCCCA 58.863 55.000 0.00 0.00 40.46 4.96
63 64 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
64 65 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
65 66 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
66 67 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
85 86 3.545703 AGGGTTTAAATCCTGATGCTCG 58.454 45.455 19.53 0.00 38.36 5.03
86 87 2.033424 GGGTTTAAATCCTGATGCTCGC 59.967 50.000 10.45 0.00 0.00 5.03
87 88 2.945668 GGTTTAAATCCTGATGCTCGCT 59.054 45.455 0.00 0.00 0.00 4.93
88 89 3.378427 GGTTTAAATCCTGATGCTCGCTT 59.622 43.478 0.00 0.00 0.00 4.68
89 90 4.142381 GGTTTAAATCCTGATGCTCGCTTT 60.142 41.667 0.00 0.00 0.00 3.51
90 91 5.065988 GGTTTAAATCCTGATGCTCGCTTTA 59.934 40.000 0.00 0.00 0.00 1.85
91 92 6.238759 GGTTTAAATCCTGATGCTCGCTTTAT 60.239 38.462 0.00 0.00 0.00 1.40
92 93 6.942532 TTAAATCCTGATGCTCGCTTTATT 57.057 33.333 0.00 0.00 0.00 1.40
93 94 5.841957 AAATCCTGATGCTCGCTTTATTT 57.158 34.783 0.00 0.00 0.00 1.40
94 95 5.429957 AATCCTGATGCTCGCTTTATTTC 57.570 39.130 0.00 0.00 0.00 2.17
95 96 4.142609 TCCTGATGCTCGCTTTATTTCT 57.857 40.909 0.00 0.00 0.00 2.52
96 97 3.873361 TCCTGATGCTCGCTTTATTTCTG 59.127 43.478 0.00 0.00 0.00 3.02
97 98 3.003068 CCTGATGCTCGCTTTATTTCTGG 59.997 47.826 0.00 0.00 0.00 3.86
98 99 3.872696 TGATGCTCGCTTTATTTCTGGA 58.127 40.909 0.00 0.00 0.00 3.86
99 100 4.454678 TGATGCTCGCTTTATTTCTGGAT 58.545 39.130 0.00 0.00 0.00 3.41
100 101 4.883585 TGATGCTCGCTTTATTTCTGGATT 59.116 37.500 0.00 0.00 0.00 3.01
101 102 5.357878 TGATGCTCGCTTTATTTCTGGATTT 59.642 36.000 0.00 0.00 0.00 2.17
102 103 6.542005 TGATGCTCGCTTTATTTCTGGATTTA 59.458 34.615 0.00 0.00 0.00 1.40
103 104 6.942532 TGCTCGCTTTATTTCTGGATTTAT 57.057 33.333 0.00 0.00 0.00 1.40
104 105 7.333528 TGCTCGCTTTATTTCTGGATTTATT 57.666 32.000 0.00 0.00 0.00 1.40
105 106 7.771183 TGCTCGCTTTATTTCTGGATTTATTT 58.229 30.769 0.00 0.00 0.00 1.40
106 107 7.915397 TGCTCGCTTTATTTCTGGATTTATTTC 59.085 33.333 0.00 0.00 0.00 2.17
107 108 7.915397 GCTCGCTTTATTTCTGGATTTATTTCA 59.085 33.333 0.00 0.00 0.00 2.69
108 109 9.443283 CTCGCTTTATTTCTGGATTTATTTCAG 57.557 33.333 0.00 0.00 0.00 3.02
109 110 8.405531 TCGCTTTATTTCTGGATTTATTTCAGG 58.594 33.333 0.00 0.00 0.00 3.86
110 111 8.405531 CGCTTTATTTCTGGATTTATTTCAGGA 58.594 33.333 0.00 0.00 0.00 3.86
117 118 7.333528 TCTGGATTTATTTCAGGATTTTCCG 57.666 36.000 0.00 0.00 42.75 4.30
118 119 6.321181 TCTGGATTTATTTCAGGATTTTCCGG 59.679 38.462 0.00 0.00 42.75 5.14
119 120 5.163457 TGGATTTATTTCAGGATTTTCCGGC 60.163 40.000 0.00 0.00 42.75 6.13
120 121 4.364415 TTTATTTCAGGATTTTCCGGCG 57.636 40.909 0.00 0.00 42.75 6.46
121 122 2.122783 ATTTCAGGATTTTCCGGCGA 57.877 45.000 9.30 0.00 42.75 5.54
122 123 2.122783 TTTCAGGATTTTCCGGCGAT 57.877 45.000 9.30 0.00 42.75 4.58
123 124 1.378531 TTCAGGATTTTCCGGCGATG 58.621 50.000 9.30 0.00 42.75 3.84
124 125 1.095228 TCAGGATTTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.75 3.91
125 126 1.077787 AGGATTTTCCGGCGATGCA 60.078 52.632 9.30 0.00 42.75 3.96
126 127 1.064134 GGATTTTCCGGCGATGCAC 59.936 57.895 9.30 0.00 0.00 4.57
127 128 1.376609 GGATTTTCCGGCGATGCACT 61.377 55.000 9.30 0.00 0.00 4.40
128 129 0.451783 GATTTTCCGGCGATGCACTT 59.548 50.000 9.30 0.00 0.00 3.16
129 130 0.887933 ATTTTCCGGCGATGCACTTT 59.112 45.000 9.30 0.00 0.00 2.66
130 131 0.239879 TTTTCCGGCGATGCACTTTC 59.760 50.000 9.30 0.00 0.00 2.62
131 132 0.886938 TTTCCGGCGATGCACTTTCA 60.887 50.000 9.30 0.00 0.00 2.69
132 133 1.298157 TTCCGGCGATGCACTTTCAG 61.298 55.000 9.30 0.00 0.00 3.02
133 134 2.034879 CCGGCGATGCACTTTCAGT 61.035 57.895 9.30 0.00 0.00 3.41
145 146 2.588620 ACTTTCAGTGAGAGGAGACGT 58.411 47.619 14.67 0.00 0.00 4.34
146 147 2.959707 ACTTTCAGTGAGAGGAGACGTT 59.040 45.455 14.67 0.00 0.00 3.99
147 148 3.004944 ACTTTCAGTGAGAGGAGACGTTC 59.995 47.826 14.67 0.00 0.00 3.95
148 149 2.570415 TCAGTGAGAGGAGACGTTCT 57.430 50.000 0.00 0.00 0.00 3.01
149 150 2.428491 TCAGTGAGAGGAGACGTTCTC 58.572 52.381 7.84 7.84 42.66 2.87
150 151 1.129624 CAGTGAGAGGAGACGTTCTCG 59.870 57.143 9.74 0.00 44.28 4.04
170 171 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
173 174 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
175 176 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
178 179 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
179 180 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
180 181 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
181 182 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
182 183 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
183 184 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
184 185 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
185 186 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
186 187 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
187 188 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
188 189 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
189 190 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
190 191 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
191 192 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
192 193 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
193 194 5.230306 CGGTGACTTCGTAAATCTCAAGATC 59.770 44.000 0.00 0.00 32.75 2.75
194 195 6.100004 GGTGACTTCGTAAATCTCAAGATCA 58.900 40.000 0.00 0.00 32.75 2.92
195 196 6.758886 GGTGACTTCGTAAATCTCAAGATCAT 59.241 38.462 0.00 0.00 32.75 2.45
196 197 7.921214 GGTGACTTCGTAAATCTCAAGATCATA 59.079 37.037 0.00 0.00 32.75 2.15
197 198 9.469807 GTGACTTCGTAAATCTCAAGATCATAT 57.530 33.333 0.00 0.00 32.75 1.78
198 199 9.468532 TGACTTCGTAAATCTCAAGATCATATG 57.531 33.333 0.00 0.00 32.75 1.78
199 200 8.304202 ACTTCGTAAATCTCAAGATCATATGC 57.696 34.615 0.00 0.00 32.75 3.14
200 201 7.386299 ACTTCGTAAATCTCAAGATCATATGCC 59.614 37.037 0.00 0.00 32.75 4.40
201 202 6.997655 TCGTAAATCTCAAGATCATATGCCT 58.002 36.000 0.00 0.00 32.75 4.75
202 203 8.122472 TCGTAAATCTCAAGATCATATGCCTA 57.878 34.615 0.00 0.00 32.75 3.93
203 204 8.029522 TCGTAAATCTCAAGATCATATGCCTAC 58.970 37.037 0.00 0.00 32.75 3.18
204 205 8.031864 CGTAAATCTCAAGATCATATGCCTACT 58.968 37.037 0.00 0.00 32.75 2.57
205 206 9.364989 GTAAATCTCAAGATCATATGCCTACTC 57.635 37.037 0.00 0.00 32.75 2.59
206 207 7.550597 AATCTCAAGATCATATGCCTACTCA 57.449 36.000 0.00 0.00 32.75 3.41
207 208 6.587206 TCTCAAGATCATATGCCTACTCAG 57.413 41.667 0.00 0.00 0.00 3.35
208 209 6.073981 TCTCAAGATCATATGCCTACTCAGT 58.926 40.000 0.00 0.00 0.00 3.41
209 210 6.208402 TCTCAAGATCATATGCCTACTCAGTC 59.792 42.308 0.00 0.00 0.00 3.51
210 211 6.073981 TCAAGATCATATGCCTACTCAGTCT 58.926 40.000 0.00 0.00 0.00 3.24
211 212 6.208402 TCAAGATCATATGCCTACTCAGTCTC 59.792 42.308 0.00 0.00 0.00 3.36
212 213 5.891198 AGATCATATGCCTACTCAGTCTCT 58.109 41.667 0.00 0.00 0.00 3.10
213 214 5.945784 AGATCATATGCCTACTCAGTCTCTC 59.054 44.000 0.00 0.00 0.00 3.20
214 215 4.068599 TCATATGCCTACTCAGTCTCTCG 58.931 47.826 0.00 0.00 0.00 4.04
215 216 1.686355 ATGCCTACTCAGTCTCTCGG 58.314 55.000 0.00 0.00 0.00 4.63
216 217 0.618981 TGCCTACTCAGTCTCTCGGA 59.381 55.000 0.00 0.00 0.00 4.55
217 218 1.305201 GCCTACTCAGTCTCTCGGAG 58.695 60.000 0.00 0.00 42.53 4.63
218 219 1.961793 CCTACTCAGTCTCTCGGAGG 58.038 60.000 4.96 0.00 41.46 4.30
219 220 1.210967 CCTACTCAGTCTCTCGGAGGT 59.789 57.143 4.96 0.00 41.46 3.85
220 221 2.285083 CTACTCAGTCTCTCGGAGGTG 58.715 57.143 4.96 0.00 41.46 4.00
221 222 0.963355 ACTCAGTCTCTCGGAGGTGC 60.963 60.000 4.96 0.00 41.46 5.01
222 223 1.662438 CTCAGTCTCTCGGAGGTGCC 61.662 65.000 4.96 0.00 35.32 5.01
223 224 2.363147 AGTCTCTCGGAGGTGCCC 60.363 66.667 4.96 0.00 0.00 5.36
224 225 2.680352 GTCTCTCGGAGGTGCCCA 60.680 66.667 4.96 0.00 0.00 5.36
225 226 2.060980 GTCTCTCGGAGGTGCCCAT 61.061 63.158 4.96 0.00 0.00 4.00
226 227 0.755698 GTCTCTCGGAGGTGCCCATA 60.756 60.000 4.96 0.00 0.00 2.74
227 228 0.468214 TCTCTCGGAGGTGCCCATAG 60.468 60.000 4.96 0.00 0.00 2.23
228 229 1.457643 TCTCGGAGGTGCCCATAGG 60.458 63.158 4.96 0.00 0.00 2.57
240 241 3.800826 CCATAGGGGTAAGGTGTGC 57.199 57.895 0.00 0.00 0.00 4.57
241 242 0.179056 CCATAGGGGTAAGGTGTGCG 60.179 60.000 0.00 0.00 0.00 5.34
242 243 0.539986 CATAGGGGTAAGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
243 244 0.539986 ATAGGGGTAAGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
244 245 0.832983 TAGGGGTAAGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
245 246 1.964373 GGGGTAAGGTGTGCGTGTG 60.964 63.158 0.00 0.00 0.00 3.82
246 247 1.227734 GGGTAAGGTGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
247 248 1.503818 GGGTAAGGTGTGCGTGTGTG 61.504 60.000 0.00 0.00 0.00 3.82
248 249 1.278637 GTAAGGTGTGCGTGTGTGC 59.721 57.895 0.00 0.00 0.00 4.57
249 250 2.241190 TAAGGTGTGCGTGTGTGCG 61.241 57.895 0.00 0.00 37.81 5.34
250 251 2.909614 TAAGGTGTGCGTGTGTGCGT 62.910 55.000 0.00 0.00 37.81 5.24
251 252 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
252 253 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
253 254 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
254 255 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
255 256 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
256 257 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
257 258 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
258 259 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
259 260 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
260 261 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
261 262 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
262 263 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
263 264 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
264 265 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
265 266 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
266 267 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
267 268 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
268 269 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
269 270 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
270 271 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
271 272 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
272 273 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
273 274 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
274 275 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
275 276 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
276 277 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
277 278 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
278 279 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
279 280 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
280 281 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
281 282 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
282 283 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
283 284 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
284 285 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
289 290 2.264207 CGCGTGTATATGAGCGTTTG 57.736 50.000 0.00 0.00 46.48 2.93
290 291 1.586578 CGCGTGTATATGAGCGTTTGT 59.413 47.619 0.00 0.00 46.48 2.83
291 292 2.594269 CGCGTGTATATGAGCGTTTGTG 60.594 50.000 0.00 0.00 46.48 3.33
292 293 2.347452 GCGTGTATATGAGCGTTTGTGT 59.653 45.455 0.00 0.00 0.00 3.72
293 294 3.541516 GCGTGTATATGAGCGTTTGTGTC 60.542 47.826 0.00 0.00 0.00 3.67
294 295 3.857665 CGTGTATATGAGCGTTTGTGTCT 59.142 43.478 0.00 0.00 0.00 3.41
295 296 4.259411 CGTGTATATGAGCGTTTGTGTCTG 60.259 45.833 0.00 0.00 0.00 3.51
296 297 4.625742 GTGTATATGAGCGTTTGTGTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
297 298 5.803461 GTGTATATGAGCGTTTGTGTCTGTA 59.197 40.000 0.00 0.00 0.00 2.74
298 299 5.803461 TGTATATGAGCGTTTGTGTCTGTAC 59.197 40.000 0.00 0.00 0.00 2.90
299 300 2.882927 TGAGCGTTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
300 301 2.469826 TGAGCGTTTGTGTCTGTACTG 58.530 47.619 0.00 0.00 0.00 2.74
301 302 2.100087 TGAGCGTTTGTGTCTGTACTGA 59.900 45.455 0.00 0.00 0.00 3.41
302 303 3.243737 TGAGCGTTTGTGTCTGTACTGAT 60.244 43.478 5.69 0.00 0.00 2.90
303 304 3.059884 AGCGTTTGTGTCTGTACTGATG 58.940 45.455 5.69 0.00 0.00 3.07
304 305 2.411547 GCGTTTGTGTCTGTACTGATGC 60.412 50.000 5.69 3.20 0.00 3.91
305 306 3.059884 CGTTTGTGTCTGTACTGATGCT 58.940 45.455 5.69 0.00 0.00 3.79
306 307 4.234574 CGTTTGTGTCTGTACTGATGCTA 58.765 43.478 5.69 0.00 0.00 3.49
307 308 4.684242 CGTTTGTGTCTGTACTGATGCTAA 59.316 41.667 5.69 3.33 0.00 3.09
308 309 5.176774 CGTTTGTGTCTGTACTGATGCTAAA 59.823 40.000 5.69 3.77 0.00 1.85
309 310 6.292649 CGTTTGTGTCTGTACTGATGCTAAAA 60.293 38.462 5.69 1.59 0.00 1.52
310 311 7.414436 GTTTGTGTCTGTACTGATGCTAAAAA 58.586 34.615 5.69 0.00 0.00 1.94
390 391 8.894409 ACATGATGAACATTTGTTAATACACG 57.106 30.769 0.00 0.00 38.56 4.49
391 392 8.726068 ACATGATGAACATTTGTTAATACACGA 58.274 29.630 0.00 0.00 38.56 4.35
392 393 8.998989 CATGATGAACATTTGTTAATACACGAC 58.001 33.333 0.00 0.00 38.56 4.34
393 394 7.230914 TGATGAACATTTGTTAATACACGACG 58.769 34.615 0.00 0.00 38.56 5.12
394 395 6.766452 TGAACATTTGTTAATACACGACGA 57.234 33.333 0.00 0.00 38.56 4.20
395 396 7.175073 TGAACATTTGTTAATACACGACGAA 57.825 32.000 0.00 0.00 38.56 3.85
396 397 7.064674 TGAACATTTGTTAATACACGACGAAC 58.935 34.615 0.00 0.00 38.56 3.95
397 398 6.528014 ACATTTGTTAATACACGACGAACA 57.472 33.333 0.00 0.00 32.98 3.18
398 399 7.124347 ACATTTGTTAATACACGACGAACAT 57.876 32.000 0.00 0.00 32.98 2.71
399 400 7.577979 ACATTTGTTAATACACGACGAACATT 58.422 30.769 0.00 0.00 32.98 2.71
400 401 8.071368 ACATTTGTTAATACACGACGAACATTT 58.929 29.630 0.00 0.00 32.98 2.32
401 402 8.897809 CATTTGTTAATACACGACGAACATTTT 58.102 29.630 0.00 0.00 32.98 1.82
402 403 8.838452 TTTGTTAATACACGACGAACATTTTT 57.162 26.923 0.00 0.00 32.98 1.94
471 472 9.715123 TGATATGCAACAATTTCTTAATACACG 57.285 29.630 0.00 0.00 0.00 4.49
472 473 9.929722 GATATGCAACAATTTCTTAATACACGA 57.070 29.630 0.00 0.00 0.00 4.35
474 475 8.619146 ATGCAACAATTTCTTAATACACGATG 57.381 30.769 0.00 0.00 0.00 3.84
475 476 7.811653 TGCAACAATTTCTTAATACACGATGA 58.188 30.769 0.00 0.00 0.00 2.92
476 477 8.293157 TGCAACAATTTCTTAATACACGATGAA 58.707 29.630 0.00 0.00 0.00 2.57
477 478 9.289303 GCAACAATTTCTTAATACACGATGAAT 57.711 29.630 0.00 0.00 0.00 2.57
569 570 7.470289 TTTTAAAACCCGATGAACATGTTTG 57.530 32.000 13.36 3.53 0.00 2.93
570 571 4.927978 AAAACCCGATGAACATGTTTGA 57.072 36.364 13.36 3.02 0.00 2.69
571 572 4.927978 AAACCCGATGAACATGTTTGAA 57.072 36.364 13.36 2.26 0.00 2.69
572 573 5.467035 AAACCCGATGAACATGTTTGAAT 57.533 34.783 13.36 7.26 0.00 2.57
573 574 6.582677 AAACCCGATGAACATGTTTGAATA 57.417 33.333 13.36 0.00 0.00 1.75
574 575 5.818136 ACCCGATGAACATGTTTGAATAG 57.182 39.130 13.36 7.58 0.00 1.73
575 576 5.496556 ACCCGATGAACATGTTTGAATAGA 58.503 37.500 13.36 0.00 0.00 1.98
576 577 5.354234 ACCCGATGAACATGTTTGAATAGAC 59.646 40.000 13.36 0.00 0.00 2.59
577 578 5.492854 CCGATGAACATGTTTGAATAGACG 58.507 41.667 13.36 9.84 0.00 4.18
578 579 5.492854 CGATGAACATGTTTGAATAGACGG 58.507 41.667 13.36 0.00 0.00 4.79
579 580 5.063438 CGATGAACATGTTTGAATAGACGGT 59.937 40.000 13.36 0.00 0.00 4.83
580 581 5.605564 TGAACATGTTTGAATAGACGGTG 57.394 39.130 13.36 0.00 0.00 4.94
581 582 5.301555 TGAACATGTTTGAATAGACGGTGA 58.698 37.500 13.36 0.00 0.00 4.02
582 583 5.760743 TGAACATGTTTGAATAGACGGTGAA 59.239 36.000 13.36 0.00 0.00 3.18
583 584 6.261158 TGAACATGTTTGAATAGACGGTGAAA 59.739 34.615 13.36 0.00 0.00 2.69
584 585 6.241207 ACATGTTTGAATAGACGGTGAAAG 57.759 37.500 0.00 0.00 0.00 2.62
585 586 4.742438 TGTTTGAATAGACGGTGAAAGC 57.258 40.909 0.00 0.00 0.00 3.51
586 587 3.500680 TGTTTGAATAGACGGTGAAAGCC 59.499 43.478 0.00 0.00 0.00 4.35
587 588 3.410631 TTGAATAGACGGTGAAAGCCA 57.589 42.857 0.00 0.00 0.00 4.75
588 589 2.972625 TGAATAGACGGTGAAAGCCAG 58.027 47.619 0.00 0.00 0.00 4.85
589 590 2.565391 TGAATAGACGGTGAAAGCCAGA 59.435 45.455 0.00 0.00 0.00 3.86
590 591 3.007506 TGAATAGACGGTGAAAGCCAGAA 59.992 43.478 0.00 0.00 0.00 3.02
591 592 2.743636 TAGACGGTGAAAGCCAGAAG 57.256 50.000 0.00 0.00 0.00 2.85
592 593 1.048601 AGACGGTGAAAGCCAGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
593 594 1.416401 AGACGGTGAAAGCCAGAAGAA 59.584 47.619 0.00 0.00 0.00 2.52
594 595 2.039084 AGACGGTGAAAGCCAGAAGAAT 59.961 45.455 0.00 0.00 0.00 2.40
595 596 2.154462 ACGGTGAAAGCCAGAAGAATG 58.846 47.619 0.00 0.00 0.00 2.67
596 597 2.224523 ACGGTGAAAGCCAGAAGAATGA 60.225 45.455 0.00 0.00 0.00 2.57
597 598 2.813754 CGGTGAAAGCCAGAAGAATGAA 59.186 45.455 0.00 0.00 0.00 2.57
598 599 3.253188 CGGTGAAAGCCAGAAGAATGAAA 59.747 43.478 0.00 0.00 0.00 2.69
599 600 4.261572 CGGTGAAAGCCAGAAGAATGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
600 601 5.600696 GGTGAAAGCCAGAAGAATGAAAAA 58.399 37.500 0.00 0.00 0.00 1.94
690 691 6.901081 AAAACAGAAAATGAAGAGGTAGGG 57.099 37.500 0.00 0.00 0.00 3.53
691 692 5.843019 AACAGAAAATGAAGAGGTAGGGA 57.157 39.130 0.00 0.00 0.00 4.20
692 693 5.843019 ACAGAAAATGAAGAGGTAGGGAA 57.157 39.130 0.00 0.00 0.00 3.97
693 694 6.200878 ACAGAAAATGAAGAGGTAGGGAAA 57.799 37.500 0.00 0.00 0.00 3.13
694 695 6.610830 ACAGAAAATGAAGAGGTAGGGAAAA 58.389 36.000 0.00 0.00 0.00 2.29
695 696 7.066781 ACAGAAAATGAAGAGGTAGGGAAAAA 58.933 34.615 0.00 0.00 0.00 1.94
752 753 5.599359 AAAACAACCCAAACAACGAAAAG 57.401 34.783 0.00 0.00 0.00 2.27
753 754 2.612604 ACAACCCAAACAACGAAAAGC 58.387 42.857 0.00 0.00 0.00 3.51
754 755 2.028930 ACAACCCAAACAACGAAAAGCA 60.029 40.909 0.00 0.00 0.00 3.91
755 756 2.996621 CAACCCAAACAACGAAAAGCAA 59.003 40.909 0.00 0.00 0.00 3.91
756 757 3.535280 ACCCAAACAACGAAAAGCAAT 57.465 38.095 0.00 0.00 0.00 3.56
757 758 3.453424 ACCCAAACAACGAAAAGCAATC 58.547 40.909 0.00 0.00 0.00 2.67
758 759 3.132111 ACCCAAACAACGAAAAGCAATCT 59.868 39.130 0.00 0.00 0.00 2.40
759 760 4.119136 CCCAAACAACGAAAAGCAATCTT 58.881 39.130 0.00 0.00 0.00 2.40
760 761 4.209080 CCCAAACAACGAAAAGCAATCTTC 59.791 41.667 0.00 0.00 0.00 2.87
761 762 4.209080 CCAAACAACGAAAAGCAATCTTCC 59.791 41.667 0.00 0.00 0.00 3.46
762 763 3.643159 ACAACGAAAAGCAATCTTCCC 57.357 42.857 0.00 0.00 0.00 3.97
763 764 2.296190 ACAACGAAAAGCAATCTTCCCC 59.704 45.455 0.00 0.00 0.00 4.81
1908 2053 9.169468 GCATTATGTTGCATTATGTTGTACTAC 57.831 33.333 0.05 0.05 42.31 2.73
1909 2054 9.663904 CATTATGTTGCATTATGTTGTACTACC 57.336 33.333 4.98 0.00 0.00 3.18
1910 2055 8.794335 TTATGTTGCATTATGTTGTACTACCA 57.206 30.769 4.98 0.00 0.00 3.25
1911 2056 6.735678 TGTTGCATTATGTTGTACTACCAG 57.264 37.500 4.98 0.00 0.00 4.00
1912 2057 6.234920 TGTTGCATTATGTTGTACTACCAGT 58.765 36.000 4.98 0.00 0.00 4.00
1913 2058 7.387643 TGTTGCATTATGTTGTACTACCAGTA 58.612 34.615 4.98 0.00 0.00 2.74
1923 2068 2.304221 ACTACCAGTACACCTGCTCA 57.696 50.000 0.00 0.00 40.06 4.26
1924 2069 2.605257 ACTACCAGTACACCTGCTCAA 58.395 47.619 0.00 0.00 40.06 3.02
1925 2070 3.173965 ACTACCAGTACACCTGCTCAAT 58.826 45.455 0.00 0.00 40.06 2.57
1926 2071 4.350245 ACTACCAGTACACCTGCTCAATA 58.650 43.478 0.00 0.00 40.06 1.90
1927 2072 4.962995 ACTACCAGTACACCTGCTCAATAT 59.037 41.667 0.00 0.00 40.06 1.28
1928 2073 4.844349 ACCAGTACACCTGCTCAATATT 57.156 40.909 0.00 0.00 40.06 1.28
1929 2074 5.179452 ACCAGTACACCTGCTCAATATTT 57.821 39.130 0.00 0.00 40.06 1.40
1930 2075 4.943705 ACCAGTACACCTGCTCAATATTTG 59.056 41.667 0.00 0.00 40.06 2.32
1931 2076 4.943705 CCAGTACACCTGCTCAATATTTGT 59.056 41.667 0.00 0.00 40.06 2.83
1932 2077 6.112734 CCAGTACACCTGCTCAATATTTGTA 58.887 40.000 0.00 0.00 40.06 2.41
1933 2078 6.597672 CCAGTACACCTGCTCAATATTTGTAA 59.402 38.462 0.00 0.00 40.06 2.41
1934 2079 7.414098 CCAGTACACCTGCTCAATATTTGTAAC 60.414 40.741 0.00 0.00 40.06 2.50
1935 2080 7.334421 CAGTACACCTGCTCAATATTTGTAACT 59.666 37.037 0.00 0.00 33.59 2.24
1936 2081 6.500684 ACACCTGCTCAATATTTGTAACTG 57.499 37.500 0.00 0.00 0.00 3.16
1937 2082 5.106157 ACACCTGCTCAATATTTGTAACTGC 60.106 40.000 0.00 0.00 0.00 4.40
1938 2083 5.009631 ACCTGCTCAATATTTGTAACTGCA 58.990 37.500 0.00 0.00 0.00 4.41
1939 2084 5.653769 ACCTGCTCAATATTTGTAACTGCAT 59.346 36.000 0.00 0.00 0.00 3.96
1940 2085 6.183360 ACCTGCTCAATATTTGTAACTGCATC 60.183 38.462 0.00 0.00 0.00 3.91
1941 2086 6.135290 TGCTCAATATTTGTAACTGCATCC 57.865 37.500 0.00 0.00 0.00 3.51
1942 2087 5.651576 TGCTCAATATTTGTAACTGCATCCA 59.348 36.000 0.00 0.00 0.00 3.41
1943 2088 6.183360 TGCTCAATATTTGTAACTGCATCCAG 60.183 38.462 0.00 0.00 44.80 3.86
1952 2097 2.772739 CTGCATCCAGTACACCTGC 58.227 57.895 0.00 0.00 40.06 4.85
1953 2098 0.251354 CTGCATCCAGTACACCTGCT 59.749 55.000 0.00 0.00 40.06 4.24
1954 2099 0.250234 TGCATCCAGTACACCTGCTC 59.750 55.000 0.00 0.00 40.06 4.26
1955 2100 0.250234 GCATCCAGTACACCTGCTCA 59.750 55.000 0.00 0.00 40.06 4.26
1956 2101 1.339055 GCATCCAGTACACCTGCTCAA 60.339 52.381 0.00 0.00 40.06 3.02
1957 2102 2.681976 GCATCCAGTACACCTGCTCAAT 60.682 50.000 0.00 0.00 40.06 2.57
1958 2103 3.432186 GCATCCAGTACACCTGCTCAATA 60.432 47.826 0.00 0.00 40.06 1.90
1959 2104 4.744867 GCATCCAGTACACCTGCTCAATAT 60.745 45.833 0.00 0.00 40.06 1.28
1960 2105 5.371526 CATCCAGTACACCTGCTCAATATT 58.628 41.667 0.00 0.00 40.06 1.28
1961 2106 5.435686 TCCAGTACACCTGCTCAATATTT 57.564 39.130 0.00 0.00 40.06 1.40
1962 2107 5.185454 TCCAGTACACCTGCTCAATATTTG 58.815 41.667 0.00 0.00 40.06 2.32
1963 2108 4.943705 CCAGTACACCTGCTCAATATTTGT 59.056 41.667 0.00 0.00 40.06 2.83
1964 2109 6.070481 TCCAGTACACCTGCTCAATATTTGTA 60.070 38.462 0.00 0.00 40.06 2.41
1965 2110 6.597672 CCAGTACACCTGCTCAATATTTGTAA 59.402 38.462 0.00 0.00 40.06 2.41
1966 2111 7.283127 CCAGTACACCTGCTCAATATTTGTAAT 59.717 37.037 0.00 0.00 40.06 1.89
1967 2112 8.677300 CAGTACACCTGCTCAATATTTGTAATT 58.323 33.333 0.00 0.00 33.59 1.40
1968 2113 9.243105 AGTACACCTGCTCAATATTTGTAATTT 57.757 29.630 0.00 0.00 0.00 1.82
1969 2114 9.503427 GTACACCTGCTCAATATTTGTAATTTC 57.497 33.333 0.00 0.00 0.00 2.17
1970 2115 7.250569 ACACCTGCTCAATATTTGTAATTTCG 58.749 34.615 0.00 0.00 0.00 3.46
1971 2116 7.094377 ACACCTGCTCAATATTTGTAATTTCGT 60.094 33.333 0.00 0.00 0.00 3.85
1972 2117 7.754924 CACCTGCTCAATATTTGTAATTTCGTT 59.245 33.333 0.00 0.00 0.00 3.85
1973 2118 7.754924 ACCTGCTCAATATTTGTAATTTCGTTG 59.245 33.333 0.00 0.00 0.00 4.10
1974 2119 7.967854 CCTGCTCAATATTTGTAATTTCGTTGA 59.032 33.333 0.00 0.00 0.00 3.18
1975 2120 9.507280 CTGCTCAATATTTGTAATTTCGTTGAT 57.493 29.630 0.00 0.00 0.00 2.57
1976 2121 9.853555 TGCTCAATATTTGTAATTTCGTTGATT 57.146 25.926 0.00 0.00 0.00 2.57
1984 2129 9.965824 ATTTGTAATTTCGTTGATTCAGAGTTT 57.034 25.926 0.00 0.00 0.00 2.66
1985 2130 9.445786 TTTGTAATTTCGTTGATTCAGAGTTTC 57.554 29.630 0.00 0.00 0.00 2.78
1986 2131 8.148807 TGTAATTTCGTTGATTCAGAGTTTCA 57.851 30.769 0.00 0.00 0.00 2.69
1987 2132 8.783093 TGTAATTTCGTTGATTCAGAGTTTCAT 58.217 29.630 0.00 0.00 0.00 2.57
1990 2135 6.968131 TTCGTTGATTCAGAGTTTCATAGG 57.032 37.500 0.00 0.00 0.00 2.57
1991 2136 6.037786 TCGTTGATTCAGAGTTTCATAGGT 57.962 37.500 0.00 0.00 0.00 3.08
1992 2137 7.165460 TCGTTGATTCAGAGTTTCATAGGTA 57.835 36.000 0.00 0.00 0.00 3.08
1993 2138 7.608153 TCGTTGATTCAGAGTTTCATAGGTAA 58.392 34.615 0.00 0.00 0.00 2.85
1994 2139 8.258007 TCGTTGATTCAGAGTTTCATAGGTAAT 58.742 33.333 0.00 0.00 0.00 1.89
1995 2140 8.883731 CGTTGATTCAGAGTTTCATAGGTAATT 58.116 33.333 0.00 0.00 0.00 1.40
1997 2142 8.648557 TGATTCAGAGTTTCATAGGTAATTCG 57.351 34.615 0.00 0.00 0.00 3.34
1998 2143 6.903883 TTCAGAGTTTCATAGGTAATTCGC 57.096 37.500 0.00 0.00 0.00 4.70
1999 2144 5.972935 TCAGAGTTTCATAGGTAATTCGCA 58.027 37.500 0.00 0.00 0.00 5.10
2000 2145 6.582636 TCAGAGTTTCATAGGTAATTCGCAT 58.417 36.000 0.00 0.00 0.00 4.73
2001 2146 7.722363 TCAGAGTTTCATAGGTAATTCGCATA 58.278 34.615 0.00 0.00 0.00 3.14
2002 2147 8.201464 TCAGAGTTTCATAGGTAATTCGCATAA 58.799 33.333 0.00 0.00 0.00 1.90
2003 2148 8.993121 CAGAGTTTCATAGGTAATTCGCATAAT 58.007 33.333 0.00 0.00 0.00 1.28
2004 2149 8.993121 AGAGTTTCATAGGTAATTCGCATAATG 58.007 33.333 0.00 0.00 0.00 1.90
2005 2150 8.099364 AGTTTCATAGGTAATTCGCATAATGG 57.901 34.615 0.00 0.00 0.00 3.16
2006 2151 7.936847 AGTTTCATAGGTAATTCGCATAATGGA 59.063 33.333 0.00 0.00 0.00 3.41
2007 2152 8.730680 GTTTCATAGGTAATTCGCATAATGGAT 58.269 33.333 0.00 0.00 0.00 3.41
2008 2153 8.862325 TTCATAGGTAATTCGCATAATGGATT 57.138 30.769 0.00 0.00 0.00 3.01
2009 2154 8.267620 TCATAGGTAATTCGCATAATGGATTG 57.732 34.615 0.00 0.00 0.00 2.67
2010 2155 7.882791 TCATAGGTAATTCGCATAATGGATTGT 59.117 33.333 0.00 0.00 0.00 2.71
2011 2156 6.560253 AGGTAATTCGCATAATGGATTGTC 57.440 37.500 0.00 0.00 0.00 3.18
2012 2157 6.061441 AGGTAATTCGCATAATGGATTGTCA 58.939 36.000 0.00 0.00 0.00 3.58
2013 2158 6.716628 AGGTAATTCGCATAATGGATTGTCAT 59.283 34.615 0.00 0.00 0.00 3.06
2014 2159 7.882791 AGGTAATTCGCATAATGGATTGTCATA 59.117 33.333 0.00 0.00 0.00 2.15
2015 2160 7.962918 GGTAATTCGCATAATGGATTGTCATAC 59.037 37.037 0.00 0.00 0.00 2.39
2016 2161 7.509141 AATTCGCATAATGGATTGTCATACA 57.491 32.000 0.00 0.00 0.00 2.29
2017 2162 7.692460 ATTCGCATAATGGATTGTCATACAT 57.308 32.000 0.00 0.00 35.13 2.29
2018 2163 8.791327 ATTCGCATAATGGATTGTCATACATA 57.209 30.769 0.00 0.00 31.99 2.29
2019 2164 8.614469 TTCGCATAATGGATTGTCATACATAA 57.386 30.769 0.00 0.00 31.99 1.90
2020 2165 8.791327 TCGCATAATGGATTGTCATACATAAT 57.209 30.769 0.00 0.00 31.99 1.28
2021 2166 9.230122 TCGCATAATGGATTGTCATACATAATT 57.770 29.630 0.00 0.00 31.99 1.40
2022 2167 9.844790 CGCATAATGGATTGTCATACATAATTT 57.155 29.630 0.00 0.00 31.99 1.82
3578 4413 9.167311 CTAGACCTGCACTCTTTAACATTATTT 57.833 33.333 0.00 0.00 0.00 1.40
3944 4781 4.961511 GGCGCACCAGTGACGACA 62.962 66.667 10.83 0.00 37.80 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.670105 AACCATGGGTTGATTCGCT 57.330 47.368 18.09 0.00 45.07 4.93
9 10 2.225017 CCTAACCAACTCAACCATGGGT 60.225 50.000 18.09 6.57 44.04 4.51
10 11 2.225017 ACCTAACCAACTCAACCATGGG 60.225 50.000 18.09 0.00 38.58 4.00
11 12 2.819608 CACCTAACCAACTCAACCATGG 59.180 50.000 11.19 11.19 40.16 3.66
12 13 2.819608 CCACCTAACCAACTCAACCATG 59.180 50.000 0.00 0.00 0.00 3.66
13 14 2.714250 TCCACCTAACCAACTCAACCAT 59.286 45.455 0.00 0.00 0.00 3.55
14 15 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
15 16 2.943036 TCCACCTAACCAACTCAACC 57.057 50.000 0.00 0.00 0.00 3.77
16 17 4.935808 CACTATCCACCTAACCAACTCAAC 59.064 45.833 0.00 0.00 0.00 3.18
17 18 4.564821 GCACTATCCACCTAACCAACTCAA 60.565 45.833 0.00 0.00 0.00 3.02
18 19 3.055385 GCACTATCCACCTAACCAACTCA 60.055 47.826 0.00 0.00 0.00 3.41
19 20 3.532542 GCACTATCCACCTAACCAACTC 58.467 50.000 0.00 0.00 0.00 3.01
20 21 2.238898 GGCACTATCCACCTAACCAACT 59.761 50.000 0.00 0.00 0.00 3.16
21 22 2.026636 TGGCACTATCCACCTAACCAAC 60.027 50.000 0.00 0.00 0.00 3.77
22 23 2.270858 TGGCACTATCCACCTAACCAA 58.729 47.619 0.00 0.00 0.00 3.67
23 24 1.959710 TGGCACTATCCACCTAACCA 58.040 50.000 0.00 0.00 0.00 3.67
24 25 3.646637 ACTATGGCACTATCCACCTAACC 59.353 47.826 0.00 0.00 39.25 2.85
25 26 4.503296 CCACTATGGCACTATCCACCTAAC 60.503 50.000 0.00 0.00 39.25 2.34
26 27 3.646162 CCACTATGGCACTATCCACCTAA 59.354 47.826 0.00 0.00 39.25 2.69
27 28 3.239449 CCACTATGGCACTATCCACCTA 58.761 50.000 0.00 0.00 39.25 3.08
28 29 2.050144 CCACTATGGCACTATCCACCT 58.950 52.381 0.00 0.00 39.25 4.00
29 30 1.768870 ACCACTATGGCACTATCCACC 59.231 52.381 0.00 0.00 42.67 4.61
30 31 4.322801 GGATACCACTATGGCACTATCCAC 60.323 50.000 14.04 0.00 42.67 4.02
31 32 3.838317 GGATACCACTATGGCACTATCCA 59.162 47.826 14.04 0.00 42.67 3.41
32 33 4.473477 GGATACCACTATGGCACTATCC 57.527 50.000 7.06 7.06 42.67 2.59
48 49 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
49 50 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
64 65 3.545703 CGAGCATCAGGATTTAAACCCT 58.454 45.455 0.00 0.00 33.17 4.34
65 66 2.033424 GCGAGCATCAGGATTTAAACCC 59.967 50.000 0.00 0.00 33.17 4.11
66 67 2.945668 AGCGAGCATCAGGATTTAAACC 59.054 45.455 0.00 0.00 33.17 3.27
67 68 4.622701 AAGCGAGCATCAGGATTTAAAC 57.377 40.909 0.00 0.00 33.17 2.01
68 69 6.942532 ATAAAGCGAGCATCAGGATTTAAA 57.057 33.333 0.00 0.00 33.17 1.52
69 70 6.942532 AATAAAGCGAGCATCAGGATTTAA 57.057 33.333 0.00 0.00 33.17 1.52
70 71 6.767902 AGAAATAAAGCGAGCATCAGGATTTA 59.232 34.615 0.00 0.00 33.17 1.40
71 72 5.591877 AGAAATAAAGCGAGCATCAGGATTT 59.408 36.000 0.00 0.00 33.17 2.17
72 73 5.008415 CAGAAATAAAGCGAGCATCAGGATT 59.992 40.000 0.00 0.00 33.17 3.01
73 74 4.514441 CAGAAATAAAGCGAGCATCAGGAT 59.486 41.667 0.00 0.00 33.17 3.24
74 75 3.873361 CAGAAATAAAGCGAGCATCAGGA 59.127 43.478 0.00 0.00 33.17 3.86
75 76 3.003068 CCAGAAATAAAGCGAGCATCAGG 59.997 47.826 0.00 0.00 33.17 3.86
76 77 3.873361 TCCAGAAATAAAGCGAGCATCAG 59.127 43.478 0.00 0.00 33.17 2.90
77 78 3.872696 TCCAGAAATAAAGCGAGCATCA 58.127 40.909 0.00 0.00 33.17 3.07
78 79 5.429957 AATCCAGAAATAAAGCGAGCATC 57.570 39.130 0.00 0.00 0.00 3.91
79 80 5.841957 AAATCCAGAAATAAAGCGAGCAT 57.158 34.783 0.00 0.00 0.00 3.79
80 81 6.942532 ATAAATCCAGAAATAAAGCGAGCA 57.057 33.333 0.00 0.00 0.00 4.26
81 82 7.915397 TGAAATAAATCCAGAAATAAAGCGAGC 59.085 33.333 0.00 0.00 0.00 5.03
82 83 9.443283 CTGAAATAAATCCAGAAATAAAGCGAG 57.557 33.333 0.00 0.00 0.00 5.03
83 84 8.405531 CCTGAAATAAATCCAGAAATAAAGCGA 58.594 33.333 0.00 0.00 0.00 4.93
84 85 8.405531 TCCTGAAATAAATCCAGAAATAAAGCG 58.594 33.333 0.00 0.00 0.00 4.68
91 92 8.250332 CGGAAAATCCTGAAATAAATCCAGAAA 58.750 33.333 0.00 0.00 33.30 2.52
92 93 7.147915 CCGGAAAATCCTGAAATAAATCCAGAA 60.148 37.037 0.00 0.00 33.30 3.02
93 94 6.321181 CCGGAAAATCCTGAAATAAATCCAGA 59.679 38.462 0.00 0.00 33.30 3.86
94 95 6.507023 CCGGAAAATCCTGAAATAAATCCAG 58.493 40.000 0.00 0.00 33.30 3.86
95 96 5.163457 GCCGGAAAATCCTGAAATAAATCCA 60.163 40.000 5.05 0.00 33.30 3.41
96 97 5.289595 GCCGGAAAATCCTGAAATAAATCC 58.710 41.667 5.05 0.00 33.30 3.01
97 98 4.976116 CGCCGGAAAATCCTGAAATAAATC 59.024 41.667 5.05 0.00 33.30 2.17
98 99 4.642885 TCGCCGGAAAATCCTGAAATAAAT 59.357 37.500 5.05 0.00 33.30 1.40
99 100 4.011023 TCGCCGGAAAATCCTGAAATAAA 58.989 39.130 5.05 0.00 33.30 1.40
100 101 3.611970 TCGCCGGAAAATCCTGAAATAA 58.388 40.909 5.05 0.00 33.30 1.40
101 102 3.269538 TCGCCGGAAAATCCTGAAATA 57.730 42.857 5.05 0.00 33.30 1.40
102 103 2.122783 TCGCCGGAAAATCCTGAAAT 57.877 45.000 5.05 0.00 33.30 2.17
103 104 1.742831 CATCGCCGGAAAATCCTGAAA 59.257 47.619 5.05 0.00 33.30 2.69
104 105 1.378531 CATCGCCGGAAAATCCTGAA 58.621 50.000 5.05 0.00 33.30 3.02
105 106 1.095228 GCATCGCCGGAAAATCCTGA 61.095 55.000 5.05 0.00 33.30 3.86
106 107 1.356624 GCATCGCCGGAAAATCCTG 59.643 57.895 5.05 0.00 33.30 3.86
107 108 1.077787 TGCATCGCCGGAAAATCCT 60.078 52.632 5.05 0.00 33.30 3.24
108 109 1.064134 GTGCATCGCCGGAAAATCC 59.936 57.895 5.05 0.00 0.00 3.01
109 110 0.451783 AAGTGCATCGCCGGAAAATC 59.548 50.000 5.05 0.00 0.00 2.17
110 111 0.887933 AAAGTGCATCGCCGGAAAAT 59.112 45.000 5.05 0.00 0.00 1.82
111 112 0.239879 GAAAGTGCATCGCCGGAAAA 59.760 50.000 5.05 0.00 0.00 2.29
112 113 0.886938 TGAAAGTGCATCGCCGGAAA 60.887 50.000 5.05 0.00 0.00 3.13
113 114 1.298157 CTGAAAGTGCATCGCCGGAA 61.298 55.000 5.05 0.00 0.00 4.30
114 115 1.741401 CTGAAAGTGCATCGCCGGA 60.741 57.895 5.05 0.00 0.00 5.14
115 116 2.787249 CTGAAAGTGCATCGCCGG 59.213 61.111 0.00 0.00 0.00 6.13
125 126 6.999779 GAGAACGTCTCCTCTCACTGAAAGT 62.000 48.000 9.58 0.00 42.72 2.66
126 127 3.254657 AGAACGTCTCCTCTCACTGAAAG 59.745 47.826 0.00 0.00 42.29 2.62
127 128 3.223435 AGAACGTCTCCTCTCACTGAAA 58.777 45.455 0.00 0.00 0.00 2.69
128 129 2.814919 GAGAACGTCTCCTCTCACTGAA 59.185 50.000 9.58 0.00 37.55 3.02
129 130 2.428491 GAGAACGTCTCCTCTCACTGA 58.572 52.381 9.58 0.00 37.55 3.41
130 131 1.129624 CGAGAACGTCTCCTCTCACTG 59.870 57.143 13.79 0.00 40.34 3.66
131 132 1.444836 CGAGAACGTCTCCTCTCACT 58.555 55.000 13.79 0.00 40.34 3.41
132 133 3.980136 CGAGAACGTCTCCTCTCAC 57.020 57.895 13.79 0.00 40.34 3.51
152 153 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
153 154 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
166 167 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
167 168 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
168 169 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
169 170 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
170 171 6.100004 TGATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 37.04 4.02
171 172 7.763172 ATGATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 37.04 3.67
172 173 9.468532 CATATGATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 37.04 3.41
173 174 8.431593 GCATATGATCTTGAGATTTACGAAGTC 58.568 37.037 6.97 0.00 37.04 3.01
174 175 7.386299 GGCATATGATCTTGAGATTTACGAAGT 59.614 37.037 6.97 0.00 38.86 3.01
175 176 7.601886 AGGCATATGATCTTGAGATTTACGAAG 59.398 37.037 6.97 0.00 34.37 3.79
176 177 7.445121 AGGCATATGATCTTGAGATTTACGAA 58.555 34.615 6.97 0.00 34.37 3.85
177 178 6.997655 AGGCATATGATCTTGAGATTTACGA 58.002 36.000 6.97 0.00 34.37 3.43
178 179 8.031864 AGTAGGCATATGATCTTGAGATTTACG 58.968 37.037 6.97 0.00 34.37 3.18
179 180 9.364989 GAGTAGGCATATGATCTTGAGATTTAC 57.635 37.037 6.97 0.00 34.37 2.01
180 181 9.093458 TGAGTAGGCATATGATCTTGAGATTTA 57.907 33.333 6.97 0.00 34.37 1.40
181 182 7.971201 TGAGTAGGCATATGATCTTGAGATTT 58.029 34.615 6.97 0.00 34.37 2.17
182 183 7.235193 ACTGAGTAGGCATATGATCTTGAGATT 59.765 37.037 6.97 0.00 34.37 2.40
183 184 6.725369 ACTGAGTAGGCATATGATCTTGAGAT 59.275 38.462 6.97 0.00 37.51 2.75
184 185 6.073981 ACTGAGTAGGCATATGATCTTGAGA 58.926 40.000 6.97 0.00 0.00 3.27
185 186 6.209192 AGACTGAGTAGGCATATGATCTTGAG 59.791 42.308 6.97 0.00 32.87 3.02
186 187 6.073981 AGACTGAGTAGGCATATGATCTTGA 58.926 40.000 6.97 0.00 32.87 3.02
187 188 6.209192 AGAGACTGAGTAGGCATATGATCTTG 59.791 42.308 6.97 0.00 32.87 3.02
188 189 6.314120 AGAGACTGAGTAGGCATATGATCTT 58.686 40.000 6.97 0.00 32.87 2.40
189 190 5.891198 AGAGACTGAGTAGGCATATGATCT 58.109 41.667 6.97 5.61 32.87 2.75
190 191 5.163764 CGAGAGACTGAGTAGGCATATGATC 60.164 48.000 6.97 0.00 32.87 2.92
191 192 4.699735 CGAGAGACTGAGTAGGCATATGAT 59.300 45.833 6.97 0.00 32.87 2.45
192 193 4.068599 CGAGAGACTGAGTAGGCATATGA 58.931 47.826 6.97 0.00 32.87 2.15
193 194 3.190327 CCGAGAGACTGAGTAGGCATATG 59.810 52.174 0.00 0.00 32.87 1.78
194 195 3.073209 TCCGAGAGACTGAGTAGGCATAT 59.927 47.826 0.00 0.00 32.87 1.78
195 196 2.438392 TCCGAGAGACTGAGTAGGCATA 59.562 50.000 0.00 0.00 32.87 3.14
196 197 1.213182 TCCGAGAGACTGAGTAGGCAT 59.787 52.381 0.00 0.00 32.87 4.40
197 198 0.618981 TCCGAGAGACTGAGTAGGCA 59.381 55.000 0.00 0.00 32.87 4.75
198 199 1.305201 CTCCGAGAGACTGAGTAGGC 58.695 60.000 0.00 0.00 0.00 3.93
199 200 1.210967 ACCTCCGAGAGACTGAGTAGG 59.789 57.143 0.00 0.00 0.00 3.18
200 201 2.285083 CACCTCCGAGAGACTGAGTAG 58.715 57.143 0.00 0.00 0.00 2.57
201 202 1.679336 GCACCTCCGAGAGACTGAGTA 60.679 57.143 0.00 0.00 0.00 2.59
202 203 0.963355 GCACCTCCGAGAGACTGAGT 60.963 60.000 0.00 0.00 0.00 3.41
203 204 1.662438 GGCACCTCCGAGAGACTGAG 61.662 65.000 0.00 0.00 0.00 3.35
204 205 1.679305 GGCACCTCCGAGAGACTGA 60.679 63.158 0.00 0.00 0.00 3.41
205 206 2.888863 GGCACCTCCGAGAGACTG 59.111 66.667 0.00 0.22 0.00 3.51
222 223 0.179056 CGCACACCTTACCCCTATGG 60.179 60.000 0.00 0.00 41.37 2.74
223 224 0.539986 ACGCACACCTTACCCCTATG 59.460 55.000 0.00 0.00 0.00 2.23
224 225 0.539986 CACGCACACCTTACCCCTAT 59.460 55.000 0.00 0.00 0.00 2.57
225 226 0.832983 ACACGCACACCTTACCCCTA 60.833 55.000 0.00 0.00 0.00 3.53
226 227 2.144738 ACACGCACACCTTACCCCT 61.145 57.895 0.00 0.00 0.00 4.79
227 228 1.964373 CACACGCACACCTTACCCC 60.964 63.158 0.00 0.00 0.00 4.95
228 229 1.227734 ACACACGCACACCTTACCC 60.228 57.895 0.00 0.00 0.00 3.69
229 230 1.938861 CACACACGCACACCTTACC 59.061 57.895 0.00 0.00 0.00 2.85
230 231 1.278637 GCACACACGCACACCTTAC 59.721 57.895 0.00 0.00 0.00 2.34
231 232 2.241190 CGCACACACGCACACCTTA 61.241 57.895 0.00 0.00 0.00 2.69
232 233 3.572539 CGCACACACGCACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
233 234 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
234 235 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
235 236 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
236 237 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
237 238 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
238 239 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
239 240 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
240 241 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
241 242 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
242 243 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
243 244 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
244 245 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
245 246 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
246 247 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
247 248 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
248 249 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
249 250 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
250 251 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
251 252 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
252 253 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
253 254 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
254 255 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
255 256 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
256 257 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
257 258 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
258 259 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
259 260 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
260 261 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
261 262 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
262 263 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
263 264 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
264 265 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
265 266 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
266 267 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
267 268 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
268 269 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
271 272 2.347452 ACACAAACGCTCATATACACGC 59.653 45.455 0.00 0.00 0.00 5.34
272 273 3.857665 AGACACAAACGCTCATATACACG 59.142 43.478 0.00 0.00 0.00 4.49
273 274 4.625742 ACAGACACAAACGCTCATATACAC 59.374 41.667 0.00 0.00 0.00 2.90
274 275 4.816392 ACAGACACAAACGCTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
275 276 6.020599 CAGTACAGACACAAACGCTCATATAC 60.021 42.308 0.00 0.00 0.00 1.47
276 277 6.033966 CAGTACAGACACAAACGCTCATATA 58.966 40.000 0.00 0.00 0.00 0.86
277 278 4.864806 CAGTACAGACACAAACGCTCATAT 59.135 41.667 0.00 0.00 0.00 1.78
278 279 4.022676 TCAGTACAGACACAAACGCTCATA 60.023 41.667 0.00 0.00 0.00 2.15
279 280 3.059884 CAGTACAGACACAAACGCTCAT 58.940 45.455 0.00 0.00 0.00 2.90
280 281 2.100087 TCAGTACAGACACAAACGCTCA 59.900 45.455 0.00 0.00 0.00 4.26
281 282 2.739292 TCAGTACAGACACAAACGCTC 58.261 47.619 0.00 0.00 0.00 5.03
282 283 2.882927 TCAGTACAGACACAAACGCT 57.117 45.000 0.00 0.00 0.00 5.07
283 284 2.411547 GCATCAGTACAGACACAAACGC 60.412 50.000 0.00 0.00 0.00 4.84
284 285 3.059884 AGCATCAGTACAGACACAAACG 58.940 45.455 0.00 0.00 0.00 3.60
285 286 6.539649 TTTAGCATCAGTACAGACACAAAC 57.460 37.500 0.00 0.00 0.00 2.93
286 287 7.561021 TTTTTAGCATCAGTACAGACACAAA 57.439 32.000 0.00 0.00 0.00 2.83
364 365 9.980780 CGTGTATTAACAAATGTTCATCATGTA 57.019 29.630 1.37 0.00 37.36 2.29
365 366 8.726068 TCGTGTATTAACAAATGTTCATCATGT 58.274 29.630 1.37 0.00 37.36 3.21
366 367 8.998989 GTCGTGTATTAACAAATGTTCATCATG 58.001 33.333 1.37 4.83 37.36 3.07
367 368 7.902917 CGTCGTGTATTAACAAATGTTCATCAT 59.097 33.333 1.37 0.00 37.36 2.45
368 369 7.116519 TCGTCGTGTATTAACAAATGTTCATCA 59.883 33.333 1.37 0.00 37.36 3.07
369 370 7.449827 TCGTCGTGTATTAACAAATGTTCATC 58.550 34.615 1.37 0.00 37.36 2.92
370 371 7.354025 TCGTCGTGTATTAACAAATGTTCAT 57.646 32.000 1.37 0.24 37.36 2.57
371 372 6.766452 TCGTCGTGTATTAACAAATGTTCA 57.234 33.333 1.37 0.00 37.36 3.18
372 373 7.064674 TGTTCGTCGTGTATTAACAAATGTTC 58.935 34.615 1.37 0.00 37.36 3.18
373 374 6.946165 TGTTCGTCGTGTATTAACAAATGTT 58.054 32.000 4.01 4.01 37.36 2.71
374 375 6.528014 TGTTCGTCGTGTATTAACAAATGT 57.472 33.333 0.00 0.00 37.36 2.71
375 376 8.429739 AAATGTTCGTCGTGTATTAACAAATG 57.570 30.769 0.00 0.00 37.36 2.32
376 377 9.453325 AAAAATGTTCGTCGTGTATTAACAAAT 57.547 25.926 0.00 0.00 37.36 2.32
377 378 8.838452 AAAAATGTTCGTCGTGTATTAACAAA 57.162 26.923 0.00 0.00 37.36 2.83
445 446 9.715123 CGTGTATTAAGAAATTGTTGCATATCA 57.285 29.630 0.00 0.00 0.00 2.15
446 447 9.929722 TCGTGTATTAAGAAATTGTTGCATATC 57.070 29.630 0.00 0.00 0.00 1.63
448 449 9.715123 CATCGTGTATTAAGAAATTGTTGCATA 57.285 29.630 0.00 0.00 0.00 3.14
449 450 8.458052 TCATCGTGTATTAAGAAATTGTTGCAT 58.542 29.630 0.00 0.00 0.00 3.96
450 451 7.811653 TCATCGTGTATTAAGAAATTGTTGCA 58.188 30.769 0.00 0.00 0.00 4.08
451 452 8.667987 TTCATCGTGTATTAAGAAATTGTTGC 57.332 30.769 0.00 0.00 0.00 4.17
544 545 7.764443 TCAAACATGTTCATCGGGTTTTAAAAA 59.236 29.630 12.39 0.00 29.89 1.94
545 546 7.265673 TCAAACATGTTCATCGGGTTTTAAAA 58.734 30.769 12.39 0.00 29.89 1.52
546 547 6.806751 TCAAACATGTTCATCGGGTTTTAAA 58.193 32.000 12.39 0.00 29.89 1.52
547 548 6.392625 TCAAACATGTTCATCGGGTTTTAA 57.607 33.333 12.39 0.00 29.89 1.52
548 549 6.392625 TTCAAACATGTTCATCGGGTTTTA 57.607 33.333 12.39 0.00 29.89 1.52
549 550 4.927978 TCAAACATGTTCATCGGGTTTT 57.072 36.364 12.39 0.00 29.89 2.43
550 551 4.927978 TTCAAACATGTTCATCGGGTTT 57.072 36.364 12.39 0.00 32.33 3.27
551 552 5.943416 TCTATTCAAACATGTTCATCGGGTT 59.057 36.000 12.39 0.00 0.00 4.11
552 553 5.354234 GTCTATTCAAACATGTTCATCGGGT 59.646 40.000 12.39 0.00 0.00 5.28
553 554 5.502382 CGTCTATTCAAACATGTTCATCGGG 60.502 44.000 12.39 2.23 0.00 5.14
554 555 5.492854 CGTCTATTCAAACATGTTCATCGG 58.507 41.667 12.39 1.73 0.00 4.18
555 556 5.063438 ACCGTCTATTCAAACATGTTCATCG 59.937 40.000 12.39 8.31 0.00 3.84
556 557 6.092122 TCACCGTCTATTCAAACATGTTCATC 59.908 38.462 12.39 0.00 0.00 2.92
557 558 5.937540 TCACCGTCTATTCAAACATGTTCAT 59.062 36.000 12.39 7.27 0.00 2.57
558 559 5.301555 TCACCGTCTATTCAAACATGTTCA 58.698 37.500 12.39 0.00 0.00 3.18
559 560 5.856126 TCACCGTCTATTCAAACATGTTC 57.144 39.130 12.39 0.00 0.00 3.18
560 561 6.627395 TTTCACCGTCTATTCAAACATGTT 57.373 33.333 4.92 4.92 0.00 2.71
561 562 5.334879 GCTTTCACCGTCTATTCAAACATGT 60.335 40.000 0.00 0.00 0.00 3.21
562 563 5.088739 GCTTTCACCGTCTATTCAAACATG 58.911 41.667 0.00 0.00 0.00 3.21
563 564 4.156008 GGCTTTCACCGTCTATTCAAACAT 59.844 41.667 0.00 0.00 0.00 2.71
564 565 3.500680 GGCTTTCACCGTCTATTCAAACA 59.499 43.478 0.00 0.00 0.00 2.83
565 566 3.500680 TGGCTTTCACCGTCTATTCAAAC 59.499 43.478 0.00 0.00 0.00 2.93
566 567 3.745799 TGGCTTTCACCGTCTATTCAAA 58.254 40.909 0.00 0.00 0.00 2.69
567 568 3.007506 TCTGGCTTTCACCGTCTATTCAA 59.992 43.478 0.00 0.00 0.00 2.69
568 569 2.565391 TCTGGCTTTCACCGTCTATTCA 59.435 45.455 0.00 0.00 0.00 2.57
569 570 3.247006 TCTGGCTTTCACCGTCTATTC 57.753 47.619 0.00 0.00 0.00 1.75
570 571 3.260884 TCTTCTGGCTTTCACCGTCTATT 59.739 43.478 0.00 0.00 0.00 1.73
571 572 2.832129 TCTTCTGGCTTTCACCGTCTAT 59.168 45.455 0.00 0.00 0.00 1.98
572 573 2.244695 TCTTCTGGCTTTCACCGTCTA 58.755 47.619 0.00 0.00 0.00 2.59
573 574 1.048601 TCTTCTGGCTTTCACCGTCT 58.951 50.000 0.00 0.00 0.00 4.18
574 575 1.878953 TTCTTCTGGCTTTCACCGTC 58.121 50.000 0.00 0.00 0.00 4.79
575 576 2.154462 CATTCTTCTGGCTTTCACCGT 58.846 47.619 0.00 0.00 0.00 4.83
576 577 2.426522 TCATTCTTCTGGCTTTCACCG 58.573 47.619 0.00 0.00 0.00 4.94
577 578 4.853924 TTTCATTCTTCTGGCTTTCACC 57.146 40.909 0.00 0.00 0.00 4.02
666 667 7.066781 TCCCTACCTCTTCATTTTCTGTTTTT 58.933 34.615 0.00 0.00 0.00 1.94
667 668 6.610830 TCCCTACCTCTTCATTTTCTGTTTT 58.389 36.000 0.00 0.00 0.00 2.43
668 669 6.200878 TCCCTACCTCTTCATTTTCTGTTT 57.799 37.500 0.00 0.00 0.00 2.83
669 670 5.843019 TCCCTACCTCTTCATTTTCTGTT 57.157 39.130 0.00 0.00 0.00 3.16
670 671 5.843019 TTCCCTACCTCTTCATTTTCTGT 57.157 39.130 0.00 0.00 0.00 3.41
671 672 7.524717 TTTTTCCCTACCTCTTCATTTTCTG 57.475 36.000 0.00 0.00 0.00 3.02
729 730 5.561145 GCTTTTCGTTGTTTGGGTTGTTTTT 60.561 36.000 0.00 0.00 0.00 1.94
730 731 4.083749 GCTTTTCGTTGTTTGGGTTGTTTT 60.084 37.500 0.00 0.00 0.00 2.43
731 732 3.433957 GCTTTTCGTTGTTTGGGTTGTTT 59.566 39.130 0.00 0.00 0.00 2.83
732 733 2.997303 GCTTTTCGTTGTTTGGGTTGTT 59.003 40.909 0.00 0.00 0.00 2.83
733 734 2.028930 TGCTTTTCGTTGTTTGGGTTGT 60.029 40.909 0.00 0.00 0.00 3.32
734 735 2.611518 TGCTTTTCGTTGTTTGGGTTG 58.388 42.857 0.00 0.00 0.00 3.77
735 736 3.320673 TTGCTTTTCGTTGTTTGGGTT 57.679 38.095 0.00 0.00 0.00 4.11
736 737 3.132111 AGATTGCTTTTCGTTGTTTGGGT 59.868 39.130 0.00 0.00 0.00 4.51
737 738 3.716601 AGATTGCTTTTCGTTGTTTGGG 58.283 40.909 0.00 0.00 0.00 4.12
738 739 4.209080 GGAAGATTGCTTTTCGTTGTTTGG 59.791 41.667 0.00 0.00 33.61 3.28
739 740 4.209080 GGGAAGATTGCTTTTCGTTGTTTG 59.791 41.667 0.00 0.00 33.61 2.93
740 741 4.368315 GGGAAGATTGCTTTTCGTTGTTT 58.632 39.130 0.00 0.00 33.61 2.83
741 742 3.243737 GGGGAAGATTGCTTTTCGTTGTT 60.244 43.478 0.00 0.00 33.61 2.83
742 743 2.296190 GGGGAAGATTGCTTTTCGTTGT 59.704 45.455 0.00 0.00 33.61 3.32
743 744 2.558359 AGGGGAAGATTGCTTTTCGTTG 59.442 45.455 0.00 0.00 33.61 4.10
744 745 2.876581 AGGGGAAGATTGCTTTTCGTT 58.123 42.857 0.00 0.00 33.61 3.85
745 746 2.586648 AGGGGAAGATTGCTTTTCGT 57.413 45.000 0.00 0.00 33.61 3.85
746 747 4.884164 AGATTAGGGGAAGATTGCTTTTCG 59.116 41.667 0.00 0.00 33.61 3.46
747 748 6.782082 AAGATTAGGGGAAGATTGCTTTTC 57.218 37.500 0.00 0.00 33.61 2.29
748 749 6.155221 GGAAAGATTAGGGGAAGATTGCTTTT 59.845 38.462 0.00 0.00 33.61 2.27
749 750 5.658634 GGAAAGATTAGGGGAAGATTGCTTT 59.341 40.000 0.00 0.00 33.61 3.51
750 751 5.204292 GGAAAGATTAGGGGAAGATTGCTT 58.796 41.667 0.00 0.00 36.96 3.91
751 752 4.386873 GGGAAAGATTAGGGGAAGATTGCT 60.387 45.833 0.00 0.00 0.00 3.91
752 753 3.891977 GGGAAAGATTAGGGGAAGATTGC 59.108 47.826 0.00 0.00 0.00 3.56
753 754 5.394562 AGGGAAAGATTAGGGGAAGATTG 57.605 43.478 0.00 0.00 0.00 2.67
754 755 6.221089 AGTAGGGAAAGATTAGGGGAAGATT 58.779 40.000 0.00 0.00 0.00 2.40
755 756 5.805135 AGTAGGGAAAGATTAGGGGAAGAT 58.195 41.667 0.00 0.00 0.00 2.40
756 757 5.236425 AGTAGGGAAAGATTAGGGGAAGA 57.764 43.478 0.00 0.00 0.00 2.87
757 758 7.634526 ATTAGTAGGGAAAGATTAGGGGAAG 57.365 40.000 0.00 0.00 0.00 3.46
758 759 9.523547 TTTATTAGTAGGGAAAGATTAGGGGAA 57.476 33.333 0.00 0.00 0.00 3.97
759 760 9.167387 CTTTATTAGTAGGGAAAGATTAGGGGA 57.833 37.037 0.00 0.00 31.83 4.81
760 761 7.883833 GCTTTATTAGTAGGGAAAGATTAGGGG 59.116 40.741 0.00 0.00 31.83 4.79
761 762 8.437575 TGCTTTATTAGTAGGGAAAGATTAGGG 58.562 37.037 0.00 0.00 31.83 3.53
762 763 9.274206 GTGCTTTATTAGTAGGGAAAGATTAGG 57.726 37.037 0.00 0.00 31.83 2.69
763 764 8.979574 CGTGCTTTATTAGTAGGGAAAGATTAG 58.020 37.037 0.00 0.00 31.83 1.73
1882 2027 9.169468 GTAGTACAACATAATGCAACATAATGC 57.831 33.333 0.00 0.00 46.58 3.56
1883 2028 9.663904 GGTAGTACAACATAATGCAACATAATG 57.336 33.333 2.06 0.00 0.00 1.90
1884 2029 9.402320 TGGTAGTACAACATAATGCAACATAAT 57.598 29.630 2.06 0.00 0.00 1.28
1885 2030 8.794335 TGGTAGTACAACATAATGCAACATAA 57.206 30.769 2.06 0.00 0.00 1.90
1886 2031 8.044309 ACTGGTAGTACAACATAATGCAACATA 58.956 33.333 2.06 0.00 0.00 2.29
1887 2032 6.884295 ACTGGTAGTACAACATAATGCAACAT 59.116 34.615 2.06 0.00 0.00 2.71
1888 2033 6.234920 ACTGGTAGTACAACATAATGCAACA 58.765 36.000 2.06 0.00 0.00 3.33
1889 2034 6.737254 ACTGGTAGTACAACATAATGCAAC 57.263 37.500 2.06 0.00 0.00 4.17
1910 2055 7.334421 CAGTTACAAATATTGAGCAGGTGTACT 59.666 37.037 0.00 0.00 0.00 2.73
1911 2056 7.464358 CAGTTACAAATATTGAGCAGGTGTAC 58.536 38.462 0.00 0.00 0.00 2.90
1912 2057 6.093495 GCAGTTACAAATATTGAGCAGGTGTA 59.907 38.462 0.00 0.00 0.00 2.90
1913 2058 5.106157 GCAGTTACAAATATTGAGCAGGTGT 60.106 40.000 0.00 0.00 0.00 4.16
1914 2059 5.106197 TGCAGTTACAAATATTGAGCAGGTG 60.106 40.000 0.00 0.00 0.00 4.00
1915 2060 5.009631 TGCAGTTACAAATATTGAGCAGGT 58.990 37.500 0.00 0.00 0.00 4.00
1916 2061 5.565592 TGCAGTTACAAATATTGAGCAGG 57.434 39.130 0.00 0.00 0.00 4.85
1917 2062 6.183360 TGGATGCAGTTACAAATATTGAGCAG 60.183 38.462 0.00 0.00 32.59 4.24
1918 2063 5.651576 TGGATGCAGTTACAAATATTGAGCA 59.348 36.000 0.00 0.00 0.00 4.26
1919 2064 6.135290 TGGATGCAGTTACAAATATTGAGC 57.865 37.500 0.00 0.00 0.00 4.26
1920 2065 7.325660 ACTGGATGCAGTTACAAATATTGAG 57.674 36.000 14.93 0.00 29.93 3.02
1921 2066 7.826744 TGTACTGGATGCAGTTACAAATATTGA 59.173 33.333 25.65 0.00 36.68 2.57
1922 2067 7.910162 GTGTACTGGATGCAGTTACAAATATTG 59.090 37.037 25.65 0.00 36.68 1.90
1923 2068 7.067008 GGTGTACTGGATGCAGTTACAAATATT 59.933 37.037 25.65 0.00 36.68 1.28
1924 2069 6.542370 GGTGTACTGGATGCAGTTACAAATAT 59.458 38.462 25.65 0.00 36.68 1.28
1925 2070 5.878116 GGTGTACTGGATGCAGTTACAAATA 59.122 40.000 25.65 2.10 36.68 1.40
1926 2071 4.700213 GGTGTACTGGATGCAGTTACAAAT 59.300 41.667 25.65 0.51 36.68 2.32
1927 2072 4.069304 GGTGTACTGGATGCAGTTACAAA 58.931 43.478 25.65 3.71 36.68 2.83
1928 2073 3.326588 AGGTGTACTGGATGCAGTTACAA 59.673 43.478 25.65 4.13 36.68 2.41
1929 2074 2.903784 AGGTGTACTGGATGCAGTTACA 59.096 45.455 25.65 21.28 36.68 2.41
1930 2075 3.262420 CAGGTGTACTGGATGCAGTTAC 58.738 50.000 25.65 21.87 43.70 2.50
1931 2076 3.610040 CAGGTGTACTGGATGCAGTTA 57.390 47.619 25.65 12.17 43.70 2.24
1932 2077 2.479566 CAGGTGTACTGGATGCAGTT 57.520 50.000 25.65 9.64 43.70 3.16
1942 2087 8.807948 AATTACAAATATTGAGCAGGTGTACT 57.192 30.769 0.00 0.00 0.00 2.73
1943 2088 9.503427 GAAATTACAAATATTGAGCAGGTGTAC 57.497 33.333 0.00 0.00 0.00 2.90
1944 2089 8.394877 CGAAATTACAAATATTGAGCAGGTGTA 58.605 33.333 0.00 0.00 0.00 2.90
1945 2090 7.094377 ACGAAATTACAAATATTGAGCAGGTGT 60.094 33.333 0.00 0.00 0.00 4.16
1946 2091 7.250569 ACGAAATTACAAATATTGAGCAGGTG 58.749 34.615 0.00 0.00 0.00 4.00
1947 2092 7.391148 ACGAAATTACAAATATTGAGCAGGT 57.609 32.000 0.00 0.00 0.00 4.00
1948 2093 7.967854 TCAACGAAATTACAAATATTGAGCAGG 59.032 33.333 0.00 0.00 0.00 4.85
1949 2094 8.894409 TCAACGAAATTACAAATATTGAGCAG 57.106 30.769 0.00 0.00 0.00 4.24
1950 2095 9.853555 AATCAACGAAATTACAAATATTGAGCA 57.146 25.926 0.00 0.00 0.00 4.26
1958 2103 9.965824 AAACTCTGAATCAACGAAATTACAAAT 57.034 25.926 0.00 0.00 0.00 2.32
1959 2104 9.445786 GAAACTCTGAATCAACGAAATTACAAA 57.554 29.630 0.00 0.00 0.00 2.83
1960 2105 8.616942 TGAAACTCTGAATCAACGAAATTACAA 58.383 29.630 0.00 0.00 0.00 2.41
1961 2106 8.148807 TGAAACTCTGAATCAACGAAATTACA 57.851 30.769 0.00 0.00 0.00 2.41
1964 2109 8.454106 CCTATGAAACTCTGAATCAACGAAATT 58.546 33.333 0.00 0.00 0.00 1.82
1965 2110 7.607991 ACCTATGAAACTCTGAATCAACGAAAT 59.392 33.333 0.00 0.00 0.00 2.17
1966 2111 6.934645 ACCTATGAAACTCTGAATCAACGAAA 59.065 34.615 0.00 0.00 0.00 3.46
1967 2112 6.464222 ACCTATGAAACTCTGAATCAACGAA 58.536 36.000 0.00 0.00 0.00 3.85
1968 2113 6.037786 ACCTATGAAACTCTGAATCAACGA 57.962 37.500 0.00 0.00 0.00 3.85
1969 2114 7.827819 TTACCTATGAAACTCTGAATCAACG 57.172 36.000 0.00 0.00 0.00 4.10
1971 2116 9.098355 CGAATTACCTATGAAACTCTGAATCAA 57.902 33.333 0.00 0.00 0.00 2.57
1972 2117 7.224753 GCGAATTACCTATGAAACTCTGAATCA 59.775 37.037 0.00 0.00 0.00 2.57
1973 2118 7.224753 TGCGAATTACCTATGAAACTCTGAATC 59.775 37.037 0.00 0.00 0.00 2.52
1974 2119 7.047891 TGCGAATTACCTATGAAACTCTGAAT 58.952 34.615 0.00 0.00 0.00 2.57
1975 2120 6.403049 TGCGAATTACCTATGAAACTCTGAA 58.597 36.000 0.00 0.00 0.00 3.02
1976 2121 5.972935 TGCGAATTACCTATGAAACTCTGA 58.027 37.500 0.00 0.00 0.00 3.27
1977 2122 6.851222 ATGCGAATTACCTATGAAACTCTG 57.149 37.500 0.00 0.00 0.00 3.35
1978 2123 8.993121 CATTATGCGAATTACCTATGAAACTCT 58.007 33.333 0.00 0.00 0.00 3.24
1979 2124 8.230486 CCATTATGCGAATTACCTATGAAACTC 58.770 37.037 0.00 0.00 0.00 3.01
1980 2125 7.936847 TCCATTATGCGAATTACCTATGAAACT 59.063 33.333 0.00 0.00 0.00 2.66
1981 2126 8.094798 TCCATTATGCGAATTACCTATGAAAC 57.905 34.615 0.00 0.00 0.00 2.78
1982 2127 8.862325 ATCCATTATGCGAATTACCTATGAAA 57.138 30.769 0.00 0.00 0.00 2.69
1983 2128 8.729756 CAATCCATTATGCGAATTACCTATGAA 58.270 33.333 0.00 0.00 0.00 2.57
1984 2129 7.882791 ACAATCCATTATGCGAATTACCTATGA 59.117 33.333 0.00 0.00 0.00 2.15
1985 2130 8.044060 ACAATCCATTATGCGAATTACCTATG 57.956 34.615 0.00 0.00 0.00 2.23
1986 2131 7.882791 TGACAATCCATTATGCGAATTACCTAT 59.117 33.333 0.00 0.00 0.00 2.57
1987 2132 7.220740 TGACAATCCATTATGCGAATTACCTA 58.779 34.615 0.00 0.00 0.00 3.08
1988 2133 6.061441 TGACAATCCATTATGCGAATTACCT 58.939 36.000 0.00 0.00 0.00 3.08
1989 2134 6.312399 TGACAATCCATTATGCGAATTACC 57.688 37.500 0.00 0.00 0.00 2.85
1990 2135 8.503196 TGTATGACAATCCATTATGCGAATTAC 58.497 33.333 0.00 0.00 0.00 1.89
1991 2136 8.614469 TGTATGACAATCCATTATGCGAATTA 57.386 30.769 0.00 0.00 0.00 1.40
1992 2137 7.509141 TGTATGACAATCCATTATGCGAATT 57.491 32.000 0.00 0.00 0.00 2.17
1993 2138 7.692460 ATGTATGACAATCCATTATGCGAAT 57.308 32.000 0.00 0.00 0.00 3.34
1994 2139 8.614469 TTATGTATGACAATCCATTATGCGAA 57.386 30.769 0.00 0.00 0.00 4.70
1995 2140 8.791327 ATTATGTATGACAATCCATTATGCGA 57.209 30.769 0.00 0.00 0.00 5.10
1996 2141 9.844790 AAATTATGTATGACAATCCATTATGCG 57.155 29.630 0.00 0.00 0.00 4.73
2314 2581 2.602211 CTCTGAATCACTTAGCACAGCG 59.398 50.000 0.00 0.00 0.00 5.18
3578 4413 3.191791 CACATGACCATCATCAAGCACAA 59.808 43.478 0.00 0.00 34.28 3.33
3900 4737 1.228894 AGCAGAGGGAGGACAACGA 60.229 57.895 0.00 0.00 0.00 3.85
3944 4781 0.747283 GCATGTAGGCTCTGCTGCTT 60.747 55.000 0.00 0.00 33.15 3.91
4140 4977 2.887152 GCTTCCAAGTGGATGTGTTCTT 59.113 45.455 13.17 0.00 44.98 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.