Multiple sequence alignment - TraesCS5A01G097700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G097700 chr5A 100.000 2502 0 0 1 2502 139070440 139072941 0.000000e+00 4621.0
1 TraesCS5A01G097700 chr5D 95.000 1360 54 6 574 1924 124841873 124843227 0.000000e+00 2122.0
2 TraesCS5A01G097700 chr5D 92.120 533 39 3 1972 2502 465701557 465702088 0.000000e+00 749.0
3 TraesCS5A01G097700 chr5B 91.812 745 59 2 794 1537 137417724 137418467 0.000000e+00 1037.0
4 TraesCS5A01G097700 chr5B 91.912 544 41 3 1960 2502 67024596 67025137 0.000000e+00 758.0
5 TraesCS5A01G097700 chr5B 92.116 241 13 1 574 808 137416405 137416645 3.990000e-88 335.0
6 TraesCS5A01G097700 chr5B 89.823 226 20 1 1702 1924 137651610 137651835 1.130000e-73 287.0
7 TraesCS5A01G097700 chr5B 93.064 173 11 1 1533 1704 137644445 137644617 4.130000e-63 252.0
8 TraesCS5A01G097700 chr5B 81.863 204 33 4 1 201 172131132 172131334 4.280000e-38 169.0
9 TraesCS5A01G097700 chr1B 92.966 526 34 3 1979 2502 25227757 25227233 0.000000e+00 763.0
10 TraesCS5A01G097700 chr1B 85.836 353 37 9 228 572 652299670 652299323 1.830000e-96 363.0
11 TraesCS5A01G097700 chr1B 82.692 208 33 3 1 205 229945916 229946123 5.500000e-42 182.0
12 TraesCS5A01G097700 chr7A 92.081 543 35 6 1961 2502 694042072 694042607 0.000000e+00 758.0
13 TraesCS5A01G097700 chr7A 76.739 834 138 29 753 1561 50425708 50424906 4.980000e-112 414.0
14 TraesCS5A01G097700 chr3D 92.037 540 37 4 1968 2502 559108822 559109360 0.000000e+00 754.0
15 TraesCS5A01G097700 chr3D 91.225 547 43 4 1960 2502 62072408 62071863 0.000000e+00 739.0
16 TraesCS5A01G097700 chr7B 91.713 543 43 2 1961 2502 670256471 670257012 0.000000e+00 752.0
17 TraesCS5A01G097700 chr7B 91.697 542 38 5 1964 2502 693253291 693252754 0.000000e+00 745.0
18 TraesCS5A01G097700 chr7B 86.901 313 34 5 262 572 79054090 79053783 6.630000e-91 344.0
19 TraesCS5A01G097700 chr7B 84.637 358 37 8 230 572 705973437 705973083 8.570000e-90 340.0
20 TraesCS5A01G097700 chr7B 84.314 357 36 13 230 571 481348959 481348608 5.160000e-87 331.0
21 TraesCS5A01G097700 chr7B 87.108 287 27 9 293 571 704276213 704275929 1.440000e-82 316.0
22 TraesCS5A01G097700 chr7B 81.500 200 36 1 4 202 287493821 287494020 1.990000e-36 163.0
23 TraesCS5A01G097700 chr7D 91.193 545 45 3 1960 2502 101779430 101778887 0.000000e+00 737.0
24 TraesCS5A01G097700 chr7D 77.712 839 129 34 751 1561 47809357 47808549 6.310000e-126 460.0
25 TraesCS5A01G097700 chr7D 87.288 354 30 10 228 572 8991699 8991352 8.390000e-105 390.0
26 TraesCS5A01G097700 chr1D 86.207 348 40 5 228 572 331198620 331198278 1.090000e-98 370.0
27 TraesCS5A01G097700 chr4A 86.297 343 35 11 235 572 668444256 668444591 1.830000e-96 363.0
28 TraesCS5A01G097700 chr4D 84.463 354 35 10 235 572 387753918 387753569 5.160000e-87 331.0
29 TraesCS5A01G097700 chr6B 84.653 202 30 1 1 201 583242131 583242332 1.520000e-47 200.0
30 TraesCS5A01G097700 chr3B 84.158 202 31 1 1 201 451184525 451184726 7.060000e-46 195.0
31 TraesCS5A01G097700 chr3B 86.127 173 21 3 13 184 638338359 638338529 1.530000e-42 183.0
32 TraesCS5A01G097700 chr3B 81.281 203 37 1 4 205 466817014 466816812 1.990000e-36 163.0
33 TraesCS5A01G097700 chr2B 81.863 204 30 6 3 202 55824268 55824468 5.540000e-37 165.0
34 TraesCS5A01G097700 chr2D 81.818 198 32 3 1 197 441562762 441562956 1.990000e-36 163.0
35 TraesCS5A01G097700 chr2A 100.000 36 0 0 1923 1958 656837938 656837903 1.610000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G097700 chr5A 139070440 139072941 2501 False 4621 4621 100.000 1 2502 1 chr5A.!!$F1 2501
1 TraesCS5A01G097700 chr5D 124841873 124843227 1354 False 2122 2122 95.000 574 1924 1 chr5D.!!$F1 1350
2 TraesCS5A01G097700 chr5D 465701557 465702088 531 False 749 749 92.120 1972 2502 1 chr5D.!!$F2 530
3 TraesCS5A01G097700 chr5B 67024596 67025137 541 False 758 758 91.912 1960 2502 1 chr5B.!!$F1 542
4 TraesCS5A01G097700 chr5B 137416405 137418467 2062 False 686 1037 91.964 574 1537 2 chr5B.!!$F5 963
5 TraesCS5A01G097700 chr1B 25227233 25227757 524 True 763 763 92.966 1979 2502 1 chr1B.!!$R1 523
6 TraesCS5A01G097700 chr7A 694042072 694042607 535 False 758 758 92.081 1961 2502 1 chr7A.!!$F1 541
7 TraesCS5A01G097700 chr7A 50424906 50425708 802 True 414 414 76.739 753 1561 1 chr7A.!!$R1 808
8 TraesCS5A01G097700 chr3D 559108822 559109360 538 False 754 754 92.037 1968 2502 1 chr3D.!!$F1 534
9 TraesCS5A01G097700 chr3D 62071863 62072408 545 True 739 739 91.225 1960 2502 1 chr3D.!!$R1 542
10 TraesCS5A01G097700 chr7B 670256471 670257012 541 False 752 752 91.713 1961 2502 1 chr7B.!!$F2 541
11 TraesCS5A01G097700 chr7B 693252754 693253291 537 True 745 745 91.697 1964 2502 1 chr7B.!!$R3 538
12 TraesCS5A01G097700 chr7D 101778887 101779430 543 True 737 737 91.193 1960 2502 1 chr7D.!!$R3 542
13 TraesCS5A01G097700 chr7D 47808549 47809357 808 True 460 460 77.712 751 1561 1 chr7D.!!$R2 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 556 0.392998 GAGCTCAAATGGGCTCGGAA 60.393 55.0 18.7 0.0 44.01 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 3562 0.179169 GTAGACAGTCGGGAAGTCGC 60.179 60.0 0.0 0.0 37.36 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.834489 TTTGTGCCACATTTTGACCAT 57.166 38.095 0.00 0.00 0.00 3.55
21 22 4.944619 TTTGTGCCACATTTTGACCATA 57.055 36.364 0.00 0.00 0.00 2.74
22 23 4.517952 TTGTGCCACATTTTGACCATAG 57.482 40.909 0.00 0.00 0.00 2.23
23 24 3.760738 TGTGCCACATTTTGACCATAGA 58.239 40.909 0.00 0.00 0.00 1.98
24 25 4.343231 TGTGCCACATTTTGACCATAGAT 58.657 39.130 0.00 0.00 0.00 1.98
25 26 4.771577 TGTGCCACATTTTGACCATAGATT 59.228 37.500 0.00 0.00 0.00 2.40
26 27 5.245751 TGTGCCACATTTTGACCATAGATTT 59.754 36.000 0.00 0.00 0.00 2.17
27 28 6.435591 TGTGCCACATTTTGACCATAGATTTA 59.564 34.615 0.00 0.00 0.00 1.40
28 29 7.039434 TGTGCCACATTTTGACCATAGATTTAA 60.039 33.333 0.00 0.00 0.00 1.52
29 30 7.275560 GTGCCACATTTTGACCATAGATTTAAC 59.724 37.037 0.00 0.00 0.00 2.01
30 31 7.178274 TGCCACATTTTGACCATAGATTTAACT 59.822 33.333 0.00 0.00 0.00 2.24
31 32 8.682710 GCCACATTTTGACCATAGATTTAACTA 58.317 33.333 0.00 0.00 0.00 2.24
53 54 9.533253 AACTAAGAAAATAATAATGCATGGCAC 57.467 29.630 0.00 0.00 43.04 5.01
54 55 8.143835 ACTAAGAAAATAATAATGCATGGCACC 58.856 33.333 0.00 0.00 43.04 5.01
55 56 6.482898 AGAAAATAATAATGCATGGCACCA 57.517 33.333 0.00 0.00 43.04 4.17
56 57 6.887013 AGAAAATAATAATGCATGGCACCAA 58.113 32.000 0.00 0.00 43.04 3.67
57 58 7.337167 AGAAAATAATAATGCATGGCACCAAA 58.663 30.769 0.00 0.00 43.04 3.28
58 59 7.828223 AGAAAATAATAATGCATGGCACCAAAA 59.172 29.630 0.00 0.00 43.04 2.44
59 60 7.556733 AAATAATAATGCATGGCACCAAAAG 57.443 32.000 0.00 0.00 43.04 2.27
60 61 4.822685 AATAATGCATGGCACCAAAAGA 57.177 36.364 0.00 0.00 43.04 2.52
61 62 4.822685 ATAATGCATGGCACCAAAAGAA 57.177 36.364 0.00 0.00 43.04 2.52
62 63 3.706600 AATGCATGGCACCAAAAGAAT 57.293 38.095 0.00 0.00 43.04 2.40
63 64 4.822685 AATGCATGGCACCAAAAGAATA 57.177 36.364 0.00 0.00 43.04 1.75
64 65 5.362105 AATGCATGGCACCAAAAGAATAT 57.638 34.783 0.00 0.00 43.04 1.28
65 66 4.389890 TGCATGGCACCAAAAGAATATC 57.610 40.909 0.00 0.00 31.71 1.63
66 67 3.768215 TGCATGGCACCAAAAGAATATCA 59.232 39.130 0.00 0.00 31.71 2.15
67 68 4.114794 GCATGGCACCAAAAGAATATCAC 58.885 43.478 0.00 0.00 0.00 3.06
68 69 4.142093 GCATGGCACCAAAAGAATATCACT 60.142 41.667 0.00 0.00 0.00 3.41
69 70 5.345702 CATGGCACCAAAAGAATATCACTG 58.654 41.667 0.00 0.00 0.00 3.66
70 71 4.661222 TGGCACCAAAAGAATATCACTGA 58.339 39.130 0.00 0.00 0.00 3.41
71 72 5.076182 TGGCACCAAAAGAATATCACTGAA 58.924 37.500 0.00 0.00 0.00 3.02
72 73 5.538053 TGGCACCAAAAGAATATCACTGAAA 59.462 36.000 0.00 0.00 0.00 2.69
73 74 6.041409 TGGCACCAAAAGAATATCACTGAAAA 59.959 34.615 0.00 0.00 0.00 2.29
74 75 6.366061 GGCACCAAAAGAATATCACTGAAAAC 59.634 38.462 0.00 0.00 0.00 2.43
75 76 7.147976 GCACCAAAAGAATATCACTGAAAACT 58.852 34.615 0.00 0.00 0.00 2.66
76 77 8.296713 GCACCAAAAGAATATCACTGAAAACTA 58.703 33.333 0.00 0.00 0.00 2.24
118 119 9.979578 TCAATGGTATAATTTTTGGTGATATGC 57.020 29.630 0.00 0.00 0.00 3.14
119 120 9.761504 CAATGGTATAATTTTTGGTGATATGCA 57.238 29.630 0.00 0.00 0.00 3.96
159 160 7.759433 AGTTAAATCTATGGTCAAAATTTGGCG 59.241 33.333 5.83 0.00 35.72 5.69
160 161 5.659440 AATCTATGGTCAAAATTTGGCGT 57.341 34.783 5.83 0.00 35.72 5.68
161 162 6.767524 AATCTATGGTCAAAATTTGGCGTA 57.232 33.333 5.83 0.52 35.72 4.42
162 163 6.767524 ATCTATGGTCAAAATTTGGCGTAA 57.232 33.333 5.83 0.00 35.72 3.18
163 164 6.576662 TCTATGGTCAAAATTTGGCGTAAA 57.423 33.333 5.83 0.00 35.72 2.01
164 165 6.982852 TCTATGGTCAAAATTTGGCGTAAAA 58.017 32.000 5.83 0.00 35.72 1.52
165 166 7.607250 TCTATGGTCAAAATTTGGCGTAAAAT 58.393 30.769 5.83 0.00 35.72 1.82
166 167 8.740906 TCTATGGTCAAAATTTGGCGTAAAATA 58.259 29.630 5.83 0.00 35.72 1.40
167 168 7.589574 ATGGTCAAAATTTGGCGTAAAATAC 57.410 32.000 5.83 0.00 35.72 1.89
168 169 6.750148 TGGTCAAAATTTGGCGTAAAATACT 58.250 32.000 5.83 0.00 35.72 2.12
169 170 7.883217 TGGTCAAAATTTGGCGTAAAATACTA 58.117 30.769 5.83 0.00 35.72 1.82
170 171 8.358148 TGGTCAAAATTTGGCGTAAAATACTAA 58.642 29.630 5.83 0.00 35.72 2.24
171 172 8.856247 GGTCAAAATTTGGCGTAAAATACTAAG 58.144 33.333 5.83 0.00 35.72 2.18
172 173 9.615295 GTCAAAATTTGGCGTAAAATACTAAGA 57.385 29.630 5.83 0.00 0.00 2.10
173 174 9.834628 TCAAAATTTGGCGTAAAATACTAAGAG 57.165 29.630 5.83 0.00 0.00 2.85
174 175 9.072294 CAAAATTTGGCGTAAAATACTAAGAGG 57.928 33.333 0.00 0.00 0.00 3.69
175 176 8.570068 AAATTTGGCGTAAAATACTAAGAGGA 57.430 30.769 0.00 0.00 0.00 3.71
176 177 6.973229 TTTGGCGTAAAATACTAAGAGGAC 57.027 37.500 0.00 0.00 0.00 3.85
177 178 5.014808 TGGCGTAAAATACTAAGAGGACC 57.985 43.478 0.00 0.00 0.00 4.46
178 179 4.467082 TGGCGTAAAATACTAAGAGGACCA 59.533 41.667 0.00 0.00 0.00 4.02
179 180 5.046448 TGGCGTAAAATACTAAGAGGACCAA 60.046 40.000 0.00 0.00 0.00 3.67
180 181 6.053650 GGCGTAAAATACTAAGAGGACCAAT 58.946 40.000 0.00 0.00 0.00 3.16
181 182 7.147689 TGGCGTAAAATACTAAGAGGACCAATA 60.148 37.037 0.00 0.00 0.00 1.90
182 183 7.712205 GGCGTAAAATACTAAGAGGACCAATAA 59.288 37.037 0.00 0.00 0.00 1.40
183 184 9.101655 GCGTAAAATACTAAGAGGACCAATAAA 57.898 33.333 0.00 0.00 0.00 1.40
192 193 9.503399 ACTAAGAGGACCAATAAACTAAAACAG 57.497 33.333 0.00 0.00 0.00 3.16
193 194 9.720769 CTAAGAGGACCAATAAACTAAAACAGA 57.279 33.333 0.00 0.00 0.00 3.41
194 195 8.622948 AAGAGGACCAATAAACTAAAACAGAG 57.377 34.615 0.00 0.00 0.00 3.35
195 196 7.168905 AGAGGACCAATAAACTAAAACAGAGG 58.831 38.462 0.00 0.00 0.00 3.69
196 197 6.849151 AGGACCAATAAACTAAAACAGAGGT 58.151 36.000 0.00 0.00 0.00 3.85
197 198 7.981142 AGGACCAATAAACTAAAACAGAGGTA 58.019 34.615 0.00 0.00 0.00 3.08
198 199 8.101419 AGGACCAATAAACTAAAACAGAGGTAG 58.899 37.037 0.00 0.00 0.00 3.18
199 200 7.881751 GGACCAATAAACTAAAACAGAGGTAGT 59.118 37.037 0.00 0.00 0.00 2.73
200 201 9.933723 GACCAATAAACTAAAACAGAGGTAGTA 57.066 33.333 0.00 0.00 0.00 1.82
201 202 9.939802 ACCAATAAACTAAAACAGAGGTAGTAG 57.060 33.333 0.00 0.00 0.00 2.57
207 208 8.709272 AACTAAAACAGAGGTAGTAGAAGAGT 57.291 34.615 0.00 0.00 0.00 3.24
208 209 8.709272 ACTAAAACAGAGGTAGTAGAAGAGTT 57.291 34.615 0.00 0.00 0.00 3.01
209 210 9.804977 ACTAAAACAGAGGTAGTAGAAGAGTTA 57.195 33.333 0.00 0.00 0.00 2.24
211 212 8.709272 AAAACAGAGGTAGTAGAAGAGTTAGT 57.291 34.615 0.00 0.00 0.00 2.24
212 213 8.709272 AAACAGAGGTAGTAGAAGAGTTAGTT 57.291 34.615 0.00 0.00 0.00 2.24
213 214 9.804977 AAACAGAGGTAGTAGAAGAGTTAGTTA 57.195 33.333 0.00 0.00 0.00 2.24
214 215 9.452287 AACAGAGGTAGTAGAAGAGTTAGTTAG 57.548 37.037 0.00 0.00 0.00 2.34
215 216 8.048514 ACAGAGGTAGTAGAAGAGTTAGTTAGG 58.951 40.741 0.00 0.00 0.00 2.69
216 217 8.266473 CAGAGGTAGTAGAAGAGTTAGTTAGGA 58.734 40.741 0.00 0.00 0.00 2.94
217 218 8.267183 AGAGGTAGTAGAAGAGTTAGTTAGGAC 58.733 40.741 0.00 0.00 0.00 3.85
218 219 7.047271 AGGTAGTAGAAGAGTTAGTTAGGACG 58.953 42.308 0.00 0.00 0.00 4.79
219 220 5.816449 AGTAGAAGAGTTAGTTAGGACGC 57.184 43.478 0.00 0.00 0.00 5.19
220 221 5.251764 AGTAGAAGAGTTAGTTAGGACGCA 58.748 41.667 0.00 0.00 0.00 5.24
221 222 4.705337 AGAAGAGTTAGTTAGGACGCAG 57.295 45.455 0.00 0.00 0.00 5.18
222 223 4.333690 AGAAGAGTTAGTTAGGACGCAGA 58.666 43.478 0.00 0.00 0.00 4.26
223 224 4.396790 AGAAGAGTTAGTTAGGACGCAGAG 59.603 45.833 0.00 0.00 0.00 3.35
224 225 3.688235 AGAGTTAGTTAGGACGCAGAGT 58.312 45.455 0.00 0.00 0.00 3.24
225 226 4.080687 AGAGTTAGTTAGGACGCAGAGTT 58.919 43.478 0.00 0.00 0.00 3.01
226 227 4.523558 AGAGTTAGTTAGGACGCAGAGTTT 59.476 41.667 0.00 0.00 0.00 2.66
227 228 5.010820 AGAGTTAGTTAGGACGCAGAGTTTT 59.989 40.000 0.00 0.00 0.00 2.43
228 229 5.228665 AGTTAGTTAGGACGCAGAGTTTTC 58.771 41.667 0.00 0.00 0.00 2.29
229 230 3.746045 AGTTAGGACGCAGAGTTTTCA 57.254 42.857 0.00 0.00 0.00 2.69
230 231 4.067972 AGTTAGGACGCAGAGTTTTCAA 57.932 40.909 0.00 0.00 0.00 2.69
231 232 4.448210 AGTTAGGACGCAGAGTTTTCAAA 58.552 39.130 0.00 0.00 0.00 2.69
232 233 4.879545 AGTTAGGACGCAGAGTTTTCAAAA 59.120 37.500 0.00 0.00 0.00 2.44
233 234 3.692791 AGGACGCAGAGTTTTCAAAAC 57.307 42.857 4.72 4.72 0.00 2.43
234 235 3.013921 AGGACGCAGAGTTTTCAAAACA 58.986 40.909 15.41 0.00 0.00 2.83
235 236 3.442273 AGGACGCAGAGTTTTCAAAACAA 59.558 39.130 15.41 0.00 0.00 2.83
236 237 4.082463 AGGACGCAGAGTTTTCAAAACAAA 60.082 37.500 15.41 0.00 0.00 2.83
237 238 4.623595 GGACGCAGAGTTTTCAAAACAAAA 59.376 37.500 15.41 0.00 0.00 2.44
238 239 5.290885 GGACGCAGAGTTTTCAAAACAAAAT 59.709 36.000 15.41 0.00 0.00 1.82
239 240 6.331170 ACGCAGAGTTTTCAAAACAAAATC 57.669 33.333 15.41 4.05 0.00 2.17
240 241 5.866633 ACGCAGAGTTTTCAAAACAAAATCA 59.133 32.000 15.41 0.00 31.98 2.57
241 242 6.367422 ACGCAGAGTTTTCAAAACAAAATCAA 59.633 30.769 15.41 0.00 31.98 2.57
242 243 7.095439 ACGCAGAGTTTTCAAAACAAAATCAAA 60.095 29.630 15.41 0.00 31.98 2.69
243 244 7.743838 CGCAGAGTTTTCAAAACAAAATCAAAA 59.256 29.630 15.41 0.00 31.98 2.44
244 245 9.392021 GCAGAGTTTTCAAAACAAAATCAAAAA 57.608 25.926 15.41 0.00 31.98 1.94
335 336 8.816640 TTTTTGAAATCACATTTCTAGAAGGC 57.183 30.769 5.12 0.00 46.71 4.35
336 337 7.523293 TTTGAAATCACATTTCTAGAAGGCA 57.477 32.000 5.12 0.00 46.71 4.75
337 338 7.707624 TTGAAATCACATTTCTAGAAGGCAT 57.292 32.000 5.12 0.00 46.71 4.40
338 339 7.707624 TGAAATCACATTTCTAGAAGGCATT 57.292 32.000 5.12 2.68 46.71 3.56
339 340 7.765307 TGAAATCACATTTCTAGAAGGCATTC 58.235 34.615 2.10 2.10 46.71 2.67
340 341 7.613022 TGAAATCACATTTCTAGAAGGCATTCT 59.387 33.333 18.73 18.73 46.71 2.40
341 342 9.113838 GAAATCACATTTCTAGAAGGCATTCTA 57.886 33.333 18.97 18.97 42.93 2.10
342 343 9.466497 AAATCACATTTCTAGAAGGCATTCTAA 57.534 29.630 20.29 9.47 45.25 2.10
343 344 9.466497 AATCACATTTCTAGAAGGCATTCTAAA 57.534 29.630 20.29 15.16 45.25 1.85
344 345 8.862325 TCACATTTCTAGAAGGCATTCTAAAA 57.138 30.769 20.29 20.28 45.25 1.52
345 346 9.295825 TCACATTTCTAGAAGGCATTCTAAAAA 57.704 29.630 18.76 18.76 45.25 1.94
369 370 8.574196 AAAACAAAATCGGTACTCTGAAAATG 57.426 30.769 0.00 0.00 32.29 2.32
370 371 5.699839 ACAAAATCGGTACTCTGAAAATGC 58.300 37.500 0.00 0.00 32.29 3.56
371 372 5.473504 ACAAAATCGGTACTCTGAAAATGCT 59.526 36.000 0.00 0.00 32.29 3.79
372 373 6.653320 ACAAAATCGGTACTCTGAAAATGCTA 59.347 34.615 0.00 0.00 32.29 3.49
373 374 6.663944 AAATCGGTACTCTGAAAATGCTAC 57.336 37.500 0.00 0.00 32.29 3.58
374 375 5.599999 ATCGGTACTCTGAAAATGCTACT 57.400 39.130 0.00 0.00 32.29 2.57
375 376 5.401531 TCGGTACTCTGAAAATGCTACTT 57.598 39.130 0.00 0.00 0.00 2.24
376 377 5.408356 TCGGTACTCTGAAAATGCTACTTC 58.592 41.667 0.00 0.00 0.00 3.01
377 378 4.567159 CGGTACTCTGAAAATGCTACTTCC 59.433 45.833 0.00 0.00 0.00 3.46
378 379 5.488341 GGTACTCTGAAAATGCTACTTCCA 58.512 41.667 0.00 0.00 0.00 3.53
379 380 5.938125 GGTACTCTGAAAATGCTACTTCCAA 59.062 40.000 0.00 0.00 0.00 3.53
380 381 6.430000 GGTACTCTGAAAATGCTACTTCCAAA 59.570 38.462 0.00 0.00 0.00 3.28
381 382 6.959639 ACTCTGAAAATGCTACTTCCAAAA 57.040 33.333 0.00 0.00 0.00 2.44
382 383 6.974965 ACTCTGAAAATGCTACTTCCAAAAG 58.025 36.000 0.00 0.00 38.54 2.27
383 384 5.772521 TCTGAAAATGCTACTTCCAAAAGC 58.227 37.500 0.00 0.00 35.81 3.51
402 403 6.930667 AAAGCATTTTTGAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
403 404 5.917541 AGCATTTTTGAGCACTGAATTTG 57.082 34.783 0.00 0.00 0.00 2.32
404 405 5.362263 AGCATTTTTGAGCACTGAATTTGT 58.638 33.333 0.00 0.00 0.00 2.83
405 406 5.818857 AGCATTTTTGAGCACTGAATTTGTT 59.181 32.000 0.00 0.00 0.00 2.83
406 407 6.316890 AGCATTTTTGAGCACTGAATTTGTTT 59.683 30.769 0.00 0.00 0.00 2.83
407 408 6.968335 GCATTTTTGAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
408 409 7.485595 GCATTTTTGAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
409 410 8.790674 CATTTTTGAGCACTGAATTTGTTTTTG 58.209 29.630 0.00 0.00 0.00 2.44
410 411 7.432350 TTTTGAGCACTGAATTTGTTTTTGT 57.568 28.000 0.00 0.00 0.00 2.83
411 412 7.432350 TTTGAGCACTGAATTTGTTTTTGTT 57.568 28.000 0.00 0.00 0.00 2.83
412 413 7.432350 TTGAGCACTGAATTTGTTTTTGTTT 57.568 28.000 0.00 0.00 0.00 2.83
413 414 7.432350 TGAGCACTGAATTTGTTTTTGTTTT 57.568 28.000 0.00 0.00 0.00 2.43
414 415 7.869800 TGAGCACTGAATTTGTTTTTGTTTTT 58.130 26.923 0.00 0.00 0.00 1.94
435 436 5.782893 TTTTTCCACACCTTACAGGAATG 57.217 39.130 0.00 0.00 39.67 2.67
436 437 4.447138 TTTCCACACCTTACAGGAATGT 57.553 40.909 0.00 0.00 39.67 2.71
437 438 3.417069 TCCACACCTTACAGGAATGTG 57.583 47.619 0.00 0.00 40.26 3.21
438 439 2.976185 TCCACACCTTACAGGAATGTGA 59.024 45.455 7.74 0.78 42.02 3.58
439 440 3.587061 TCCACACCTTACAGGAATGTGAT 59.413 43.478 7.74 0.00 42.02 3.06
440 441 4.042809 TCCACACCTTACAGGAATGTGATT 59.957 41.667 7.74 0.00 42.02 2.57
441 442 4.766891 CCACACCTTACAGGAATGTGATTT 59.233 41.667 7.74 0.00 42.02 2.17
442 443 5.106157 CCACACCTTACAGGAATGTGATTTC 60.106 44.000 7.74 0.00 42.02 2.17
443 444 5.473162 CACACCTTACAGGAATGTGATTTCA 59.527 40.000 7.74 0.00 42.02 2.69
444 445 6.151648 CACACCTTACAGGAATGTGATTTCAT 59.848 38.462 7.74 0.00 42.02 2.57
445 446 6.151648 ACACCTTACAGGAATGTGATTTCATG 59.848 38.462 7.74 0.00 41.77 3.07
446 447 6.375174 CACCTTACAGGAATGTGATTTCATGA 59.625 38.462 5.92 0.00 39.18 3.07
447 448 6.375455 ACCTTACAGGAATGTGATTTCATGAC 59.625 38.462 0.00 0.00 39.18 3.06
448 449 4.952262 ACAGGAATGTGATTTCATGACG 57.048 40.909 0.00 0.00 39.18 4.35
449 450 4.578871 ACAGGAATGTGATTTCATGACGA 58.421 39.130 0.00 0.00 39.18 4.20
450 451 5.003160 ACAGGAATGTGATTTCATGACGAA 58.997 37.500 0.00 0.00 39.18 3.85
451 452 5.649395 ACAGGAATGTGATTTCATGACGAAT 59.351 36.000 0.00 0.00 39.18 3.34
452 453 6.151648 ACAGGAATGTGATTTCATGACGAATT 59.848 34.615 0.00 0.00 39.18 2.17
453 454 7.031372 CAGGAATGTGATTTCATGACGAATTT 58.969 34.615 0.00 0.00 39.18 1.82
454 455 7.543172 CAGGAATGTGATTTCATGACGAATTTT 59.457 33.333 0.00 0.00 39.18 1.82
455 456 7.543172 AGGAATGTGATTTCATGACGAATTTTG 59.457 33.333 0.00 0.00 32.32 2.44
456 457 6.636666 ATGTGATTTCATGACGAATTTTGC 57.363 33.333 0.00 0.00 32.32 3.68
457 458 5.527033 TGTGATTTCATGACGAATTTTGCA 58.473 33.333 0.00 0.00 32.32 4.08
458 459 5.981915 TGTGATTTCATGACGAATTTTGCAA 59.018 32.000 0.00 0.00 32.32 4.08
459 460 6.144241 TGTGATTTCATGACGAATTTTGCAAG 59.856 34.615 0.00 0.00 32.32 4.01
460 461 4.970472 TTTCATGACGAATTTTGCAAGC 57.030 36.364 0.00 0.00 32.32 4.01
461 462 3.639716 TCATGACGAATTTTGCAAGCA 57.360 38.095 0.00 0.00 0.00 3.91
462 463 3.307674 TCATGACGAATTTTGCAAGCAC 58.692 40.909 0.00 0.00 0.00 4.40
463 464 3.004629 TCATGACGAATTTTGCAAGCACT 59.995 39.130 0.00 0.00 0.00 4.40
464 465 3.435105 TGACGAATTTTGCAAGCACTT 57.565 38.095 0.00 0.00 0.00 3.16
465 466 4.560136 TGACGAATTTTGCAAGCACTTA 57.440 36.364 0.00 0.00 0.00 2.24
466 467 4.926244 TGACGAATTTTGCAAGCACTTAA 58.074 34.783 0.00 0.00 0.00 1.85
467 468 5.344066 TGACGAATTTTGCAAGCACTTAAA 58.656 33.333 0.00 0.00 0.00 1.52
468 469 5.807520 TGACGAATTTTGCAAGCACTTAAAA 59.192 32.000 0.00 0.00 0.00 1.52
469 470 6.031549 ACGAATTTTGCAAGCACTTAAAAC 57.968 33.333 0.00 0.00 0.00 2.43
470 471 5.810074 ACGAATTTTGCAAGCACTTAAAACT 59.190 32.000 0.00 0.00 0.00 2.66
471 472 6.312672 ACGAATTTTGCAAGCACTTAAAACTT 59.687 30.769 0.00 0.00 0.00 2.66
472 473 7.148490 ACGAATTTTGCAAGCACTTAAAACTTT 60.148 29.630 0.00 0.00 0.00 2.66
473 474 7.691877 CGAATTTTGCAAGCACTTAAAACTTTT 59.308 29.630 0.00 0.00 0.00 2.27
474 475 8.672214 AATTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
475 476 4.856115 TGCAAGCACTTAAAACTTTTGC 57.144 36.364 0.00 0.00 39.72 3.68
476 477 3.620821 TGCAAGCACTTAAAACTTTTGCC 59.379 39.130 4.14 0.00 38.82 4.52
477 478 3.620821 GCAAGCACTTAAAACTTTTGCCA 59.379 39.130 0.00 0.00 34.85 4.92
478 479 4.094146 GCAAGCACTTAAAACTTTTGCCAA 59.906 37.500 0.00 0.00 34.85 4.52
479 480 5.220835 GCAAGCACTTAAAACTTTTGCCAAT 60.221 36.000 0.00 0.00 34.85 3.16
480 481 5.989551 AGCACTTAAAACTTTTGCCAATG 57.010 34.783 0.00 0.00 33.48 2.82
481 482 5.427378 AGCACTTAAAACTTTTGCCAATGT 58.573 33.333 0.00 0.00 33.48 2.71
482 483 5.879777 AGCACTTAAAACTTTTGCCAATGTT 59.120 32.000 0.00 0.00 33.48 2.71
483 484 6.374053 AGCACTTAAAACTTTTGCCAATGTTT 59.626 30.769 8.26 8.26 40.32 2.83
484 485 6.686679 GCACTTAAAACTTTTGCCAATGTTTC 59.313 34.615 12.91 0.01 38.61 2.78
485 486 7.413988 GCACTTAAAACTTTTGCCAATGTTTCT 60.414 33.333 12.91 7.82 38.61 2.52
486 487 9.092876 CACTTAAAACTTTTGCCAATGTTTCTA 57.907 29.630 12.91 7.13 38.61 2.10
487 488 9.093970 ACTTAAAACTTTTGCCAATGTTTCTAC 57.906 29.630 12.91 0.00 38.61 2.59
488 489 6.918892 AAAACTTTTGCCAATGTTTCTACC 57.081 33.333 12.91 0.00 38.61 3.18
489 490 5.606348 AACTTTTGCCAATGTTTCTACCA 57.394 34.783 0.00 0.00 28.24 3.25
490 491 5.606348 ACTTTTGCCAATGTTTCTACCAA 57.394 34.783 0.00 0.00 0.00 3.67
491 492 5.983540 ACTTTTGCCAATGTTTCTACCAAA 58.016 33.333 0.00 0.00 0.00 3.28
492 493 6.410540 ACTTTTGCCAATGTTTCTACCAAAA 58.589 32.000 0.00 0.00 32.08 2.44
493 494 6.881602 ACTTTTGCCAATGTTTCTACCAAAAA 59.118 30.769 0.00 0.00 32.46 1.94
538 539 7.979115 TTTTTGAATTTTACTGTTCACCGAG 57.021 32.000 0.00 0.00 34.34 4.63
539 540 4.742438 TGAATTTTACTGTTCACCGAGC 57.258 40.909 0.00 0.00 29.93 5.03
540 541 4.385825 TGAATTTTACTGTTCACCGAGCT 58.614 39.130 0.00 0.00 29.93 4.09
541 542 4.451096 TGAATTTTACTGTTCACCGAGCTC 59.549 41.667 2.73 2.73 29.93 4.09
542 543 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
543 544 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
544 545 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
545 546 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
546 547 2.146342 ACTGTTCACCGAGCTCAAATG 58.854 47.619 15.40 8.47 0.00 2.32
547 548 1.466167 CTGTTCACCGAGCTCAAATGG 59.534 52.381 15.40 9.21 0.00 3.16
548 549 0.804989 GTTCACCGAGCTCAAATGGG 59.195 55.000 15.40 8.82 0.00 4.00
549 550 0.960364 TTCACCGAGCTCAAATGGGC 60.960 55.000 15.40 0.00 0.00 5.36
550 551 1.377725 CACCGAGCTCAAATGGGCT 60.378 57.895 15.40 7.67 41.88 5.19
553 554 3.819188 GAGCTCAAATGGGCTCGG 58.181 61.111 18.70 0.00 44.01 4.63
554 555 1.221840 GAGCTCAAATGGGCTCGGA 59.778 57.895 18.70 0.00 44.01 4.55
555 556 0.392998 GAGCTCAAATGGGCTCGGAA 60.393 55.000 18.70 0.00 44.01 4.30
556 557 0.393537 AGCTCAAATGGGCTCGGAAG 60.394 55.000 0.92 0.00 32.98 3.46
669 670 5.797909 CAAAACATGCATGCAAATTGTTG 57.202 34.783 29.26 22.16 37.83 3.33
741 742 6.793492 AGCCGATAAAGCTCTCAATATTTC 57.207 37.500 0.00 0.00 34.91 2.17
767 768 7.925483 CCCGCAAAAGGAAATTATTAATGATCA 59.075 33.333 0.00 0.00 0.00 2.92
931 2034 1.024579 ATAAACTTGCCGTCCCTGCG 61.025 55.000 0.00 0.00 0.00 5.18
964 2077 3.447944 GGAGTCTTACTGGGACCTTACAG 59.552 52.174 0.00 0.00 40.48 2.74
1038 2155 1.396996 GTGCAGCCAACGACGATATTT 59.603 47.619 0.00 0.00 0.00 1.40
1127 2247 4.261578 ACTTCTTACCGTCGATTTTCCA 57.738 40.909 0.00 0.00 0.00 3.53
1256 2376 2.279136 GCGAATACAAGTACTGACGCTG 59.721 50.000 15.63 5.88 41.25 5.18
1312 2432 7.658575 AGCAAGATAACTGTCAAATTTTGCATT 59.341 29.630 18.97 0.00 40.98 3.56
1374 2494 0.957395 TGCTACTGCTGCCAGAAAGC 60.957 55.000 0.00 16.02 44.42 3.51
1379 2499 1.303074 TGCTGCCAGAAAGCTGAGG 60.303 57.895 0.00 0.00 45.17 3.86
1411 2531 1.007734 GACGCGGAGTGAGTGTCAA 60.008 57.895 12.47 0.00 45.44 3.18
1443 2563 1.068753 CGTGCAACCCAAAATGCCA 59.931 52.632 0.00 0.00 41.87 4.92
1467 2587 1.141881 CGTCGGGGTCTCTTGGATG 59.858 63.158 0.00 0.00 0.00 3.51
1481 2603 3.010472 TCTTGGATGGAATTTCAGGCTCA 59.990 43.478 0.00 0.00 0.00 4.26
1486 2608 4.381292 GGATGGAATTTCAGGCTCAAACAG 60.381 45.833 0.00 0.00 0.00 3.16
1515 2640 6.704937 GTCCATCGGTAATAAAAGGAACCTAG 59.295 42.308 0.00 0.00 0.00 3.02
1546 2671 1.341080 CAACTGGCTCCCAACCAAAT 58.659 50.000 0.00 0.00 36.56 2.32
1643 2770 4.454728 TTATGAGGTTGGCTTTGAATGC 57.545 40.909 0.00 0.00 0.00 3.56
1656 2783 4.512571 GCTTTGAATGCTTCCACAACATTT 59.487 37.500 0.00 0.00 34.28 2.32
1664 2791 4.060205 GCTTCCACAACATTTCTTGCATT 58.940 39.130 0.00 0.00 0.00 3.56
1710 2837 1.174712 GGTGCCTGTCATGCAAGTGT 61.175 55.000 4.21 0.00 41.06 3.55
1733 2860 7.436080 GTGTAATTATGCATGACATGGAAAAGG 59.564 37.037 14.01 0.00 40.06 3.11
1888 3019 9.667989 CGAGAAACATCATTGATTGCATTAATA 57.332 29.630 0.00 0.00 0.00 0.98
1999 3136 2.485795 CGCCTCCTCCTTCTCCTCG 61.486 68.421 0.00 0.00 0.00 4.63
2028 3165 1.349067 AGTTAGGGTTCGTGCCTCTT 58.651 50.000 0.00 0.00 0.00 2.85
2092 3229 1.037493 CCATGGAGGCACAATGGATG 58.963 55.000 12.58 0.00 34.46 3.51
2194 3332 1.667830 CGGCGACAGCTTCCTGAAA 60.668 57.895 0.00 0.00 41.77 2.69
2231 3369 3.168528 GCCTAGCCCCCATTCCGA 61.169 66.667 0.00 0.00 0.00 4.55
2255 3393 3.386486 GTGTGTCTAACATCGTTGGTGA 58.614 45.455 0.00 0.00 41.97 4.02
2257 3395 3.069016 TGTGTCTAACATCGTTGGTGAGT 59.931 43.478 0.00 0.00 32.36 3.41
2354 3492 4.099419 GTGTGTCTTTGGTTTGGATCCTTT 59.901 41.667 14.23 0.00 0.00 3.11
2356 3494 4.340950 GTGTCTTTGGTTTGGATCCTTTCA 59.659 41.667 14.23 3.54 0.00 2.69
2424 3562 1.071471 CTATGGGGCCTTAGCACGG 59.929 63.158 0.84 0.00 46.55 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.148079 TCTATGGTCAAAATGTGGCACAA 58.852 39.130 25.95 4.35 44.16 3.33
5 6 7.547227 AGTTAAATCTATGGTCAAAATGTGGC 58.453 34.615 0.00 0.00 0.00 5.01
27 28 9.533253 GTGCCATGCATTATTATTTTCTTAGTT 57.467 29.630 0.00 0.00 41.91 2.24
28 29 8.143835 GGTGCCATGCATTATTATTTTCTTAGT 58.856 33.333 0.00 0.00 41.91 2.24
29 30 8.143193 TGGTGCCATGCATTATTATTTTCTTAG 58.857 33.333 0.00 0.00 41.91 2.18
30 31 8.016301 TGGTGCCATGCATTATTATTTTCTTA 57.984 30.769 0.00 0.00 41.91 2.10
31 32 6.887013 TGGTGCCATGCATTATTATTTTCTT 58.113 32.000 0.00 0.00 41.91 2.52
32 33 6.482898 TGGTGCCATGCATTATTATTTTCT 57.517 33.333 0.00 0.00 41.91 2.52
33 34 7.551035 TTTGGTGCCATGCATTATTATTTTC 57.449 32.000 0.00 0.00 41.91 2.29
34 35 7.828223 TCTTTTGGTGCCATGCATTATTATTTT 59.172 29.630 0.00 0.00 41.91 1.82
35 36 7.337167 TCTTTTGGTGCCATGCATTATTATTT 58.663 30.769 0.00 0.00 41.91 1.40
36 37 6.887013 TCTTTTGGTGCCATGCATTATTATT 58.113 32.000 0.00 0.00 41.91 1.40
37 38 6.482898 TCTTTTGGTGCCATGCATTATTAT 57.517 33.333 0.00 0.00 41.91 1.28
38 39 5.929058 TCTTTTGGTGCCATGCATTATTA 57.071 34.783 0.00 0.00 41.91 0.98
39 40 4.822685 TCTTTTGGTGCCATGCATTATT 57.177 36.364 0.00 0.00 41.91 1.40
40 41 4.822685 TTCTTTTGGTGCCATGCATTAT 57.177 36.364 0.00 0.00 41.91 1.28
41 42 4.822685 ATTCTTTTGGTGCCATGCATTA 57.177 36.364 0.00 0.00 41.91 1.90
42 43 3.706600 ATTCTTTTGGTGCCATGCATT 57.293 38.095 0.00 0.00 41.91 3.56
43 44 4.406326 TGATATTCTTTTGGTGCCATGCAT 59.594 37.500 0.00 0.00 41.91 3.96
44 45 3.768215 TGATATTCTTTTGGTGCCATGCA 59.232 39.130 0.00 0.00 35.60 3.96
45 46 4.114794 GTGATATTCTTTTGGTGCCATGC 58.885 43.478 0.00 0.00 0.00 4.06
46 47 5.125900 TCAGTGATATTCTTTTGGTGCCATG 59.874 40.000 0.00 0.00 0.00 3.66
47 48 5.263599 TCAGTGATATTCTTTTGGTGCCAT 58.736 37.500 0.00 0.00 0.00 4.40
48 49 4.661222 TCAGTGATATTCTTTTGGTGCCA 58.339 39.130 0.00 0.00 0.00 4.92
49 50 5.643379 TTCAGTGATATTCTTTTGGTGCC 57.357 39.130 0.00 0.00 0.00 5.01
50 51 7.147976 AGTTTTCAGTGATATTCTTTTGGTGC 58.852 34.615 0.00 0.00 0.00 5.01
92 93 9.979578 GCATATCACCAAAAATTATACCATTGA 57.020 29.630 0.00 0.00 0.00 2.57
93 94 9.761504 TGCATATCACCAAAAATTATACCATTG 57.238 29.630 0.00 0.00 0.00 2.82
133 134 7.759433 CGCCAAATTTTGACCATAGATTTAACT 59.241 33.333 10.72 0.00 0.00 2.24
134 135 7.544217 ACGCCAAATTTTGACCATAGATTTAAC 59.456 33.333 10.72 0.00 0.00 2.01
135 136 7.607250 ACGCCAAATTTTGACCATAGATTTAA 58.393 30.769 10.72 0.00 0.00 1.52
136 137 7.164230 ACGCCAAATTTTGACCATAGATTTA 57.836 32.000 10.72 0.00 0.00 1.40
137 138 6.036577 ACGCCAAATTTTGACCATAGATTT 57.963 33.333 10.72 0.00 0.00 2.17
138 139 5.659440 ACGCCAAATTTTGACCATAGATT 57.341 34.783 10.72 0.00 0.00 2.40
139 140 6.767524 TTACGCCAAATTTTGACCATAGAT 57.232 33.333 10.72 0.00 0.00 1.98
140 141 6.576662 TTTACGCCAAATTTTGACCATAGA 57.423 33.333 10.72 0.00 0.00 1.98
141 142 7.826260 ATTTTACGCCAAATTTTGACCATAG 57.174 32.000 10.72 0.00 0.00 2.23
142 143 8.524487 AGTATTTTACGCCAAATTTTGACCATA 58.476 29.630 10.72 0.00 0.00 2.74
143 144 7.382898 AGTATTTTACGCCAAATTTTGACCAT 58.617 30.769 10.72 0.00 0.00 3.55
144 145 6.750148 AGTATTTTACGCCAAATTTTGACCA 58.250 32.000 10.72 0.00 0.00 4.02
145 146 8.745464 TTAGTATTTTACGCCAAATTTTGACC 57.255 30.769 10.72 0.94 0.00 4.02
146 147 9.615295 TCTTAGTATTTTACGCCAAATTTTGAC 57.385 29.630 10.72 0.00 0.00 3.18
147 148 9.834628 CTCTTAGTATTTTACGCCAAATTTTGA 57.165 29.630 10.72 0.00 0.00 2.69
148 149 9.072294 CCTCTTAGTATTTTACGCCAAATTTTG 57.928 33.333 1.99 1.99 0.00 2.44
149 150 9.016438 TCCTCTTAGTATTTTACGCCAAATTTT 57.984 29.630 0.00 0.00 0.00 1.82
150 151 8.456471 GTCCTCTTAGTATTTTACGCCAAATTT 58.544 33.333 0.00 0.00 0.00 1.82
151 152 7.066645 GGTCCTCTTAGTATTTTACGCCAAATT 59.933 37.037 0.00 0.00 0.00 1.82
152 153 6.541278 GGTCCTCTTAGTATTTTACGCCAAAT 59.459 38.462 0.00 0.00 0.00 2.32
153 154 5.876460 GGTCCTCTTAGTATTTTACGCCAAA 59.124 40.000 0.00 0.00 0.00 3.28
154 155 5.046448 TGGTCCTCTTAGTATTTTACGCCAA 60.046 40.000 0.00 0.00 0.00 4.52
155 156 4.467082 TGGTCCTCTTAGTATTTTACGCCA 59.533 41.667 0.00 0.00 0.00 5.69
156 157 5.014808 TGGTCCTCTTAGTATTTTACGCC 57.985 43.478 0.00 0.00 0.00 5.68
157 158 8.652810 TTATTGGTCCTCTTAGTATTTTACGC 57.347 34.615 0.00 0.00 0.00 4.42
166 167 9.503399 CTGTTTTAGTTTATTGGTCCTCTTAGT 57.497 33.333 0.00 0.00 0.00 2.24
167 168 9.720769 TCTGTTTTAGTTTATTGGTCCTCTTAG 57.279 33.333 0.00 0.00 0.00 2.18
168 169 9.720769 CTCTGTTTTAGTTTATTGGTCCTCTTA 57.279 33.333 0.00 0.00 0.00 2.10
169 170 7.665974 CCTCTGTTTTAGTTTATTGGTCCTCTT 59.334 37.037 0.00 0.00 0.00 2.85
170 171 7.168905 CCTCTGTTTTAGTTTATTGGTCCTCT 58.831 38.462 0.00 0.00 0.00 3.69
171 172 6.940867 ACCTCTGTTTTAGTTTATTGGTCCTC 59.059 38.462 0.00 0.00 0.00 3.71
172 173 6.849151 ACCTCTGTTTTAGTTTATTGGTCCT 58.151 36.000 0.00 0.00 0.00 3.85
173 174 7.881751 ACTACCTCTGTTTTAGTTTATTGGTCC 59.118 37.037 0.00 0.00 0.00 4.46
174 175 8.843885 ACTACCTCTGTTTTAGTTTATTGGTC 57.156 34.615 0.00 0.00 0.00 4.02
175 176 9.939802 CTACTACCTCTGTTTTAGTTTATTGGT 57.060 33.333 0.00 0.00 0.00 3.67
181 182 9.145442 ACTCTTCTACTACCTCTGTTTTAGTTT 57.855 33.333 0.00 0.00 0.00 2.66
182 183 8.709272 ACTCTTCTACTACCTCTGTTTTAGTT 57.291 34.615 0.00 0.00 0.00 2.24
183 184 8.709272 AACTCTTCTACTACCTCTGTTTTAGT 57.291 34.615 0.00 0.00 0.00 2.24
185 186 9.804977 ACTAACTCTTCTACTACCTCTGTTTTA 57.195 33.333 0.00 0.00 0.00 1.52
186 187 8.709272 ACTAACTCTTCTACTACCTCTGTTTT 57.291 34.615 0.00 0.00 0.00 2.43
187 188 8.709272 AACTAACTCTTCTACTACCTCTGTTT 57.291 34.615 0.00 0.00 0.00 2.83
188 189 9.452287 CTAACTAACTCTTCTACTACCTCTGTT 57.548 37.037 0.00 0.00 0.00 3.16
189 190 8.048514 CCTAACTAACTCTTCTACTACCTCTGT 58.951 40.741 0.00 0.00 0.00 3.41
190 191 8.266473 TCCTAACTAACTCTTCTACTACCTCTG 58.734 40.741 0.00 0.00 0.00 3.35
191 192 8.267183 GTCCTAACTAACTCTTCTACTACCTCT 58.733 40.741 0.00 0.00 0.00 3.69
192 193 7.224557 CGTCCTAACTAACTCTTCTACTACCTC 59.775 44.444 0.00 0.00 0.00 3.85
193 194 7.047271 CGTCCTAACTAACTCTTCTACTACCT 58.953 42.308 0.00 0.00 0.00 3.08
194 195 6.238347 GCGTCCTAACTAACTCTTCTACTACC 60.238 46.154 0.00 0.00 0.00 3.18
195 196 6.314896 TGCGTCCTAACTAACTCTTCTACTAC 59.685 42.308 0.00 0.00 0.00 2.73
196 197 6.409704 TGCGTCCTAACTAACTCTTCTACTA 58.590 40.000 0.00 0.00 0.00 1.82
197 198 5.251764 TGCGTCCTAACTAACTCTTCTACT 58.748 41.667 0.00 0.00 0.00 2.57
198 199 5.353678 TCTGCGTCCTAACTAACTCTTCTAC 59.646 44.000 0.00 0.00 0.00 2.59
199 200 5.494724 TCTGCGTCCTAACTAACTCTTCTA 58.505 41.667 0.00 0.00 0.00 2.10
200 201 4.333690 TCTGCGTCCTAACTAACTCTTCT 58.666 43.478 0.00 0.00 0.00 2.85
201 202 4.156373 ACTCTGCGTCCTAACTAACTCTTC 59.844 45.833 0.00 0.00 0.00 2.87
202 203 4.080687 ACTCTGCGTCCTAACTAACTCTT 58.919 43.478 0.00 0.00 0.00 2.85
203 204 3.688235 ACTCTGCGTCCTAACTAACTCT 58.312 45.455 0.00 0.00 0.00 3.24
204 205 4.437772 AACTCTGCGTCCTAACTAACTC 57.562 45.455 0.00 0.00 0.00 3.01
205 206 4.868314 AAACTCTGCGTCCTAACTAACT 57.132 40.909 0.00 0.00 0.00 2.24
206 207 4.986659 TGAAAACTCTGCGTCCTAACTAAC 59.013 41.667 0.00 0.00 0.00 2.34
207 208 5.204409 TGAAAACTCTGCGTCCTAACTAA 57.796 39.130 0.00 0.00 0.00 2.24
208 209 4.859304 TGAAAACTCTGCGTCCTAACTA 57.141 40.909 0.00 0.00 0.00 2.24
209 210 3.746045 TGAAAACTCTGCGTCCTAACT 57.254 42.857 0.00 0.00 0.00 2.24
210 211 4.806342 TTTGAAAACTCTGCGTCCTAAC 57.194 40.909 0.00 0.00 0.00 2.34
211 212 4.636648 TGTTTTGAAAACTCTGCGTCCTAA 59.363 37.500 20.06 0.00 0.00 2.69
212 213 4.193090 TGTTTTGAAAACTCTGCGTCCTA 58.807 39.130 20.06 0.00 0.00 2.94
213 214 3.013921 TGTTTTGAAAACTCTGCGTCCT 58.986 40.909 20.06 0.00 0.00 3.85
214 215 3.414549 TGTTTTGAAAACTCTGCGTCC 57.585 42.857 20.06 0.00 0.00 4.79
215 216 5.755330 TTTTGTTTTGAAAACTCTGCGTC 57.245 34.783 20.06 0.00 0.00 5.19
216 217 5.866633 TGATTTTGTTTTGAAAACTCTGCGT 59.133 32.000 20.06 3.66 0.00 5.24
217 218 6.329838 TGATTTTGTTTTGAAAACTCTGCG 57.670 33.333 20.06 0.00 0.00 5.18
218 219 8.947304 TTTTGATTTTGTTTTGAAAACTCTGC 57.053 26.923 20.06 7.93 0.00 4.26
314 315 7.613022 AGAATGCCTTCTAGAAATGTGATTTCA 59.387 33.333 6.63 0.00 42.39 2.69
315 316 7.994194 AGAATGCCTTCTAGAAATGTGATTTC 58.006 34.615 6.63 0.00 40.00 2.17
316 317 7.951347 AGAATGCCTTCTAGAAATGTGATTT 57.049 32.000 6.63 0.00 40.00 2.17
317 318 9.466497 TTTAGAATGCCTTCTAGAAATGTGATT 57.534 29.630 6.63 4.31 43.19 2.57
318 319 9.466497 TTTTAGAATGCCTTCTAGAAATGTGAT 57.534 29.630 6.63 0.00 43.19 3.06
319 320 8.862325 TTTTAGAATGCCTTCTAGAAATGTGA 57.138 30.769 6.63 0.00 43.19 3.58
343 344 9.030301 CATTTTCAGAGTACCGATTTTGTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
344 345 7.169140 GCATTTTCAGAGTACCGATTTTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
345 346 6.640907 GCATTTTCAGAGTACCGATTTTGTTT 59.359 34.615 0.00 0.00 0.00 2.83
346 347 6.016276 AGCATTTTCAGAGTACCGATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
347 348 5.473504 AGCATTTTCAGAGTACCGATTTTGT 59.526 36.000 0.00 0.00 0.00 2.83
348 349 5.942872 AGCATTTTCAGAGTACCGATTTTG 58.057 37.500 0.00 0.00 0.00 2.44
349 350 6.879458 AGTAGCATTTTCAGAGTACCGATTTT 59.121 34.615 0.00 0.00 0.00 1.82
350 351 6.407202 AGTAGCATTTTCAGAGTACCGATTT 58.593 36.000 0.00 0.00 0.00 2.17
351 352 5.978814 AGTAGCATTTTCAGAGTACCGATT 58.021 37.500 0.00 0.00 0.00 3.34
352 353 5.599999 AGTAGCATTTTCAGAGTACCGAT 57.400 39.130 0.00 0.00 0.00 4.18
353 354 5.401531 AAGTAGCATTTTCAGAGTACCGA 57.598 39.130 0.00 0.00 0.00 4.69
354 355 4.567159 GGAAGTAGCATTTTCAGAGTACCG 59.433 45.833 0.00 0.00 0.00 4.02
355 356 5.488341 TGGAAGTAGCATTTTCAGAGTACC 58.512 41.667 0.00 0.00 0.00 3.34
356 357 7.435068 TTTGGAAGTAGCATTTTCAGAGTAC 57.565 36.000 0.00 0.00 0.00 2.73
357 358 7.308589 GCTTTTGGAAGTAGCATTTTCAGAGTA 60.309 37.037 0.00 0.00 35.25 2.59
358 359 6.515696 GCTTTTGGAAGTAGCATTTTCAGAGT 60.516 38.462 0.00 0.00 35.25 3.24
359 360 5.860716 GCTTTTGGAAGTAGCATTTTCAGAG 59.139 40.000 0.00 0.00 35.25 3.35
360 361 5.301551 TGCTTTTGGAAGTAGCATTTTCAGA 59.698 36.000 0.00 0.00 39.79 3.27
361 362 5.531634 TGCTTTTGGAAGTAGCATTTTCAG 58.468 37.500 0.00 0.00 39.79 3.02
362 363 5.528043 TGCTTTTGGAAGTAGCATTTTCA 57.472 34.783 0.00 0.00 39.79 2.69
378 379 6.930667 AATTCAGTGCTCAAAAATGCTTTT 57.069 29.167 0.00 0.00 35.02 2.27
379 380 6.316890 ACAAATTCAGTGCTCAAAAATGCTTT 59.683 30.769 0.00 0.00 0.00 3.51
380 381 5.818857 ACAAATTCAGTGCTCAAAAATGCTT 59.181 32.000 0.00 0.00 0.00 3.91
381 382 5.362263 ACAAATTCAGTGCTCAAAAATGCT 58.638 33.333 0.00 0.00 0.00 3.79
382 383 5.662211 ACAAATTCAGTGCTCAAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
383 384 8.790674 CAAAAACAAATTCAGTGCTCAAAAATG 58.209 29.630 0.00 0.00 0.00 2.32
384 385 8.513774 ACAAAAACAAATTCAGTGCTCAAAAAT 58.486 25.926 0.00 0.00 0.00 1.82
385 386 7.869800 ACAAAAACAAATTCAGTGCTCAAAAA 58.130 26.923 0.00 0.00 0.00 1.94
386 387 7.432350 ACAAAAACAAATTCAGTGCTCAAAA 57.568 28.000 0.00 0.00 0.00 2.44
387 388 7.432350 AACAAAAACAAATTCAGTGCTCAAA 57.568 28.000 0.00 0.00 0.00 2.69
388 389 7.432350 AAACAAAAACAAATTCAGTGCTCAA 57.568 28.000 0.00 0.00 0.00 3.02
389 390 7.432350 AAAACAAAAACAAATTCAGTGCTCA 57.568 28.000 0.00 0.00 0.00 4.26
424 425 6.313658 TCGTCATGAAATCACATTCCTGTAAG 59.686 38.462 0.00 0.00 33.14 2.34
425 426 6.169800 TCGTCATGAAATCACATTCCTGTAA 58.830 36.000 0.00 0.00 33.14 2.41
426 427 5.729510 TCGTCATGAAATCACATTCCTGTA 58.270 37.500 0.00 0.00 33.14 2.74
427 428 4.578871 TCGTCATGAAATCACATTCCTGT 58.421 39.130 0.00 0.00 35.44 4.00
428 429 5.550232 TTCGTCATGAAATCACATTCCTG 57.450 39.130 0.00 0.00 32.37 3.86
429 430 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
430 431 7.669098 CAAAATTCGTCATGAAATCACATTCC 58.331 34.615 0.00 0.00 40.71 3.01
431 432 7.148771 TGCAAAATTCGTCATGAAATCACATTC 60.149 33.333 0.00 0.00 40.71 2.67
432 433 6.645827 TGCAAAATTCGTCATGAAATCACATT 59.354 30.769 0.00 0.00 40.71 2.71
433 434 6.157904 TGCAAAATTCGTCATGAAATCACAT 58.842 32.000 0.00 0.00 40.71 3.21
434 435 5.527033 TGCAAAATTCGTCATGAAATCACA 58.473 33.333 0.00 0.00 40.71 3.58
435 436 6.450845 TTGCAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
436 437 5.118971 GCTTGCAAAATTCGTCATGAAATCA 59.881 36.000 0.00 0.00 40.71 2.57
437 438 5.118971 TGCTTGCAAAATTCGTCATGAAATC 59.881 36.000 0.00 0.00 40.71 2.17
438 439 4.989797 TGCTTGCAAAATTCGTCATGAAAT 59.010 33.333 0.00 0.00 40.71 2.17
439 440 4.208873 GTGCTTGCAAAATTCGTCATGAAA 59.791 37.500 0.00 0.00 40.71 2.69
440 441 3.735240 GTGCTTGCAAAATTCGTCATGAA 59.265 39.130 0.00 0.00 41.81 2.57
441 442 3.004629 AGTGCTTGCAAAATTCGTCATGA 59.995 39.130 0.00 0.00 0.00 3.07
442 443 3.311106 AGTGCTTGCAAAATTCGTCATG 58.689 40.909 0.00 0.00 0.00 3.07
443 444 3.648339 AGTGCTTGCAAAATTCGTCAT 57.352 38.095 0.00 0.00 0.00 3.06
444 445 3.435105 AAGTGCTTGCAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
445 446 5.881637 TTTAAGTGCTTGCAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
446 447 5.810074 AGTTTTAAGTGCTTGCAAAATTCGT 59.190 32.000 0.00 0.00 0.00 3.85
447 448 6.272698 AGTTTTAAGTGCTTGCAAAATTCG 57.727 33.333 0.00 0.00 0.00 3.34
448 449 8.787884 CAAAAGTTTTAAGTGCTTGCAAAATTC 58.212 29.630 0.00 0.00 0.00 2.17
449 450 7.273164 GCAAAAGTTTTAAGTGCTTGCAAAATT 59.727 29.630 0.00 0.00 38.03 1.82
450 451 6.746822 GCAAAAGTTTTAAGTGCTTGCAAAAT 59.253 30.769 0.00 0.00 38.03 1.82
451 452 6.082984 GCAAAAGTTTTAAGTGCTTGCAAAA 58.917 32.000 0.00 0.00 38.03 2.44
452 453 5.391416 GGCAAAAGTTTTAAGTGCTTGCAAA 60.391 36.000 0.00 0.00 39.48 3.68
453 454 4.094146 GGCAAAAGTTTTAAGTGCTTGCAA 59.906 37.500 9.28 0.00 39.48 4.08
454 455 3.620821 GGCAAAAGTTTTAAGTGCTTGCA 59.379 39.130 9.28 0.00 39.48 4.08
455 456 3.620821 TGGCAAAAGTTTTAAGTGCTTGC 59.379 39.130 9.28 3.62 37.54 4.01
456 457 5.793026 TTGGCAAAAGTTTTAAGTGCTTG 57.207 34.783 0.00 0.00 35.53 4.01
457 458 5.879777 ACATTGGCAAAAGTTTTAAGTGCTT 59.120 32.000 3.01 0.00 35.53 3.91
458 459 5.427378 ACATTGGCAAAAGTTTTAAGTGCT 58.573 33.333 3.01 0.00 35.53 4.40
459 460 5.733226 ACATTGGCAAAAGTTTTAAGTGC 57.267 34.783 3.01 0.88 34.42 4.40
460 461 7.973601 AGAAACATTGGCAAAAGTTTTAAGTG 58.026 30.769 25.07 10.79 37.33 3.16
461 462 9.093970 GTAGAAACATTGGCAAAAGTTTTAAGT 57.906 29.630 25.07 16.52 37.33 2.24
462 463 8.547894 GGTAGAAACATTGGCAAAAGTTTTAAG 58.452 33.333 25.07 4.76 37.33 1.85
463 464 8.041323 TGGTAGAAACATTGGCAAAAGTTTTAA 58.959 29.630 25.07 17.27 37.33 1.52
464 465 7.556844 TGGTAGAAACATTGGCAAAAGTTTTA 58.443 30.769 25.07 18.40 37.33 1.52
465 466 6.410540 TGGTAGAAACATTGGCAAAAGTTTT 58.589 32.000 25.07 19.06 37.33 2.43
466 467 5.983540 TGGTAGAAACATTGGCAAAAGTTT 58.016 33.333 24.76 24.76 39.28 2.66
467 468 5.606348 TGGTAGAAACATTGGCAAAAGTT 57.394 34.783 3.01 9.78 0.00 2.66
468 469 5.606348 TTGGTAGAAACATTGGCAAAAGT 57.394 34.783 3.01 3.13 0.00 2.66
469 470 6.917217 TTTTGGTAGAAACATTGGCAAAAG 57.083 33.333 3.01 2.40 0.00 2.27
514 515 6.474102 GCTCGGTGAACAGTAAAATTCAAAAA 59.526 34.615 0.00 0.00 36.62 1.94
515 516 5.974751 GCTCGGTGAACAGTAAAATTCAAAA 59.025 36.000 0.00 0.00 36.62 2.44
516 517 5.298276 AGCTCGGTGAACAGTAAAATTCAAA 59.702 36.000 0.00 0.00 36.62 2.69
517 518 4.819630 AGCTCGGTGAACAGTAAAATTCAA 59.180 37.500 0.00 0.00 36.62 2.69
518 519 4.385825 AGCTCGGTGAACAGTAAAATTCA 58.614 39.130 0.00 0.00 32.44 2.57
519 520 4.451096 TGAGCTCGGTGAACAGTAAAATTC 59.549 41.667 9.64 0.00 0.00 2.17
520 521 4.385825 TGAGCTCGGTGAACAGTAAAATT 58.614 39.130 9.64 0.00 0.00 1.82
521 522 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
522 523 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
523 524 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
524 525 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
525 526 3.325870 CATTTGAGCTCGGTGAACAGTA 58.674 45.455 9.64 0.00 0.00 2.74
526 527 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
527 528 1.466167 CCATTTGAGCTCGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
528 529 1.522668 CCATTTGAGCTCGGTGAACA 58.477 50.000 9.64 0.00 0.00 3.18
529 530 0.804989 CCCATTTGAGCTCGGTGAAC 59.195 55.000 9.64 0.00 0.00 3.18
530 531 0.960364 GCCCATTTGAGCTCGGTGAA 60.960 55.000 9.64 1.73 0.00 3.18
531 532 1.377202 GCCCATTTGAGCTCGGTGA 60.377 57.895 9.64 0.00 0.00 4.02
532 533 1.372087 GAGCCCATTTGAGCTCGGTG 61.372 60.000 9.64 7.48 45.44 4.94
533 534 1.078143 GAGCCCATTTGAGCTCGGT 60.078 57.895 9.64 0.00 45.44 4.69
534 535 3.819188 GAGCCCATTTGAGCTCGG 58.181 61.111 9.64 4.65 45.44 4.63
537 538 0.393537 CTTCCGAGCCCATTTGAGCT 60.394 55.000 0.00 0.00 43.55 4.09
538 539 1.997928 GCTTCCGAGCCCATTTGAGC 61.998 60.000 0.00 0.00 43.29 4.26
539 540 2.101700 GCTTCCGAGCCCATTTGAG 58.898 57.895 0.00 0.00 43.29 3.02
540 541 4.319133 GCTTCCGAGCCCATTTGA 57.681 55.556 0.00 0.00 43.29 2.69
548 549 5.908268 GAAAGTACCTTTCTGCTTCCGAGC 61.908 50.000 9.00 0.00 44.33 5.03
549 550 3.320673 AAGTACCTTTCTGCTTCCGAG 57.679 47.619 0.00 0.00 0.00 4.63
550 551 3.070446 TGAAAGTACCTTTCTGCTTCCGA 59.930 43.478 15.48 0.00 46.84 4.55
551 552 3.399330 TGAAAGTACCTTTCTGCTTCCG 58.601 45.455 15.48 0.00 46.84 4.30
552 553 4.822350 ACTTGAAAGTACCTTTCTGCTTCC 59.178 41.667 15.48 0.00 46.84 3.46
553 554 6.378710 AACTTGAAAGTACCTTTCTGCTTC 57.621 37.500 15.48 0.00 46.84 3.86
554 555 7.054751 ACTAACTTGAAAGTACCTTTCTGCTT 58.945 34.615 15.48 7.83 46.84 3.91
555 556 6.592870 ACTAACTTGAAAGTACCTTTCTGCT 58.407 36.000 15.48 5.39 46.84 4.24
556 557 6.862711 ACTAACTTGAAAGTACCTTTCTGC 57.137 37.500 15.48 0.00 46.84 4.26
557 558 9.543783 ACTAACTAACTTGAAAGTACCTTTCTG 57.456 33.333 15.48 11.34 46.84 3.02
560 561 9.676861 ACAACTAACTAACTTGAAAGTACCTTT 57.323 29.630 0.00 0.00 38.57 3.11
561 562 9.676861 AACAACTAACTAACTTGAAAGTACCTT 57.323 29.630 0.00 0.00 38.57 3.50
562 563 9.676861 AAACAACTAACTAACTTGAAAGTACCT 57.323 29.630 0.00 0.00 38.57 3.08
621 622 0.533491 AATGCGTGGACCGTTAGCTA 59.467 50.000 0.00 0.00 39.32 3.32
669 670 2.684843 CGGCCAGCTTTCAGTCAGC 61.685 63.158 2.24 0.00 37.56 4.26
720 721 5.120830 CGGGAAATATTGAGAGCTTTATCGG 59.879 44.000 0.00 0.00 0.00 4.18
741 742 7.925483 TGATCATTAATAATTTCCTTTTGCGGG 59.075 33.333 0.00 0.00 0.00 6.13
767 768 6.920817 CATCAGGTATATGCATGCAATCTTT 58.079 36.000 26.68 10.51 0.00 2.52
931 2034 3.189287 CAGTAAGACTCCAAATGTGGCAC 59.811 47.826 11.55 11.55 45.54 5.01
1038 2155 1.338674 ACGACAAGGCATCCGATGAAA 60.339 47.619 12.79 0.00 0.00 2.69
1127 2247 6.254157 CACAGGCGTATATGTAAGTACGTTTT 59.746 38.462 0.00 0.00 43.98 2.43
1312 2432 5.012871 TGAAAGATGGCATCCCAAATTTTGA 59.987 36.000 23.33 8.10 46.14 2.69
1374 2494 1.613925 TCCTGAAACACTCGACCTCAG 59.386 52.381 0.00 0.00 34.55 3.35
1379 2499 1.606350 CGCGTCCTGAAACACTCGAC 61.606 60.000 0.00 0.00 0.00 4.20
1411 2531 1.257750 TGCACGTAGGGCAGATGTCT 61.258 55.000 0.00 0.00 36.11 3.41
1443 2563 2.679287 GAGACCCCGACGGAGGTT 60.679 66.667 22.81 14.86 36.17 3.50
1467 2587 5.166398 CAATCTGTTTGAGCCTGAAATTCC 58.834 41.667 0.00 0.00 37.53 3.01
1481 2603 7.931578 TTTATTACCGATGGACAATCTGTTT 57.068 32.000 0.00 0.00 34.82 2.83
1486 2608 7.415229 GTTCCTTTTATTACCGATGGACAATC 58.585 38.462 0.00 0.00 0.00 2.67
1515 2640 0.813610 GCCAGTTGCCCAAACCAAAC 60.814 55.000 0.00 0.00 39.85 2.93
1580 2705 8.859090 AGAGAGAAAGTATATCAGACAATCCTG 58.141 37.037 0.00 0.00 35.55 3.86
1643 2770 4.084223 GCAATGCAAGAAATGTTGTGGAAG 60.084 41.667 0.00 0.00 0.00 3.46
1656 2783 1.344226 CGAGACGACGCAATGCAAGA 61.344 55.000 5.91 0.00 0.00 3.02
1664 2791 2.549198 AACTGACCGAGACGACGCA 61.549 57.895 0.00 0.00 0.00 5.24
1710 2837 7.894753 TCCTTTTCCATGTCATGCATAATTA 57.105 32.000 7.35 0.00 35.74 1.40
1933 3064 9.371136 GATGACCACATTATATTGATACGACAT 57.629 33.333 1.71 0.00 36.82 3.06
1934 3065 8.364142 TGATGACCACATTATATTGATACGACA 58.636 33.333 1.71 0.00 36.82 4.35
1935 3066 8.648097 GTGATGACCACATTATATTGATACGAC 58.352 37.037 1.71 0.00 45.03 4.34
1936 3067 7.540745 CGTGATGACCACATTATATTGATACGA 59.459 37.037 1.71 0.00 45.98 3.43
1937 3068 7.328493 ACGTGATGACCACATTATATTGATACG 59.672 37.037 1.71 0.00 45.98 3.06
1938 3069 8.534333 ACGTGATGACCACATTATATTGATAC 57.466 34.615 1.71 0.00 45.98 2.24
1939 3070 9.634163 GTACGTGATGACCACATTATATTGATA 57.366 33.333 0.00 0.00 45.98 2.15
1940 3071 7.328493 CGTACGTGATGACCACATTATATTGAT 59.672 37.037 7.22 0.00 45.98 2.57
1941 3072 6.639279 CGTACGTGATGACCACATTATATTGA 59.361 38.462 7.22 0.00 45.98 2.57
1942 3073 6.419710 ACGTACGTGATGACCACATTATATTG 59.580 38.462 22.14 0.00 45.98 1.90
1943 3074 6.509656 ACGTACGTGATGACCACATTATATT 58.490 36.000 22.14 0.00 45.98 1.28
1944 3075 6.080648 ACGTACGTGATGACCACATTATAT 57.919 37.500 22.14 0.00 45.98 0.86
1945 3076 5.503662 ACGTACGTGATGACCACATTATA 57.496 39.130 22.14 0.00 45.98 0.98
1946 3077 4.380841 ACGTACGTGATGACCACATTAT 57.619 40.909 22.14 0.00 45.98 1.28
1947 3078 3.853831 ACGTACGTGATGACCACATTA 57.146 42.857 22.14 0.00 45.98 1.90
1948 3079 2.736144 ACGTACGTGATGACCACATT 57.264 45.000 22.14 0.00 45.98 2.71
1949 3080 3.011818 TCTACGTACGTGATGACCACAT 58.988 45.455 30.25 1.29 45.98 3.21
1950 3081 2.417586 CTCTACGTACGTGATGACCACA 59.582 50.000 30.25 6.36 45.98 4.17
1951 3082 2.790468 GCTCTACGTACGTGATGACCAC 60.790 54.545 30.25 11.49 42.30 4.16
1952 3083 1.399440 GCTCTACGTACGTGATGACCA 59.601 52.381 30.25 7.90 0.00 4.02
1953 3084 1.268437 GGCTCTACGTACGTGATGACC 60.268 57.143 30.25 19.69 0.00 4.02
1954 3085 1.399440 TGGCTCTACGTACGTGATGAC 59.601 52.381 30.25 20.46 0.00 3.06
1955 3086 1.669265 CTGGCTCTACGTACGTGATGA 59.331 52.381 30.25 21.75 0.00 2.92
1956 3087 1.268589 CCTGGCTCTACGTACGTGATG 60.269 57.143 30.25 19.00 0.00 3.07
1957 3088 1.022735 CCTGGCTCTACGTACGTGAT 58.977 55.000 30.25 6.64 0.00 3.06
1958 3089 1.028330 CCCTGGCTCTACGTACGTGA 61.028 60.000 30.25 22.01 0.00 4.35
1992 3129 5.047235 CCCTAACTTTCTTTCTTCGAGGAGA 60.047 44.000 0.00 0.00 0.00 3.71
1999 3136 5.560375 GCACGAACCCTAACTTTCTTTCTTC 60.560 44.000 0.00 0.00 0.00 2.87
2187 3325 6.187682 GGAGACCTTTATTCCATTTTCAGGA 58.812 40.000 0.00 0.00 0.00 3.86
2231 3369 2.400399 CAACGATGTTAGACACACCGT 58.600 47.619 0.00 0.00 38.61 4.83
2255 3393 0.753262 GAGACACACCTCCACACACT 59.247 55.000 0.00 0.00 0.00 3.55
2257 3395 0.752658 CAGAGACACACCTCCACACA 59.247 55.000 0.00 0.00 33.76 3.72
2354 3492 6.508880 CGCCGATGAAAAATAACGTAGATTGA 60.509 38.462 0.00 0.00 0.00 2.57
2356 3494 5.277154 CCGCCGATGAAAAATAACGTAGATT 60.277 40.000 0.00 0.00 0.00 2.40
2424 3562 0.179169 GTAGACAGTCGGGAAGTCGC 60.179 60.000 0.00 0.00 37.36 5.19
2470 3608 2.505982 CGTCATCGCCCCTCCATT 59.494 61.111 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.