Multiple sequence alignment - TraesCS5A01G097100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G097100 chr5A 100.000 5131 0 0 1 5131 137275077 137280207 0.000000e+00 9476
1 TraesCS5A01G097100 chr5D 96.811 2634 59 10 2506 5131 123883388 123886004 0.000000e+00 4375
2 TraesCS5A01G097100 chr5D 93.633 2513 94 33 1 2508 123880854 123883305 0.000000e+00 3694
3 TraesCS5A01G097100 chr5B 96.033 1941 42 10 2571 4493 136626268 136628191 0.000000e+00 3125
4 TraesCS5A01G097100 chr5B 95.598 1840 60 8 704 2539 136622356 136624178 0.000000e+00 2929
5 TraesCS5A01G097100 chr5B 96.250 480 15 2 4655 5131 136628190 136628669 0.000000e+00 784
6 TraesCS5A01G097100 chr5B 82.041 245 23 16 370 614 136619454 136619677 6.780000e-44 189
7 TraesCS5A01G097100 chr2D 90.116 172 14 3 4489 4659 73402882 73403051 2.410000e-53 220
8 TraesCS5A01G097100 chr6A 90.000 170 16 1 4490 4659 48520038 48520206 8.650000e-53 219
9 TraesCS5A01G097100 chr6A 88.333 180 18 3 4489 4667 594496706 594496529 4.020000e-51 213
10 TraesCS5A01G097100 chr6D 89.266 177 13 4 4482 4656 308575396 308575224 3.110000e-52 217
11 TraesCS5A01G097100 chr1D 89.535 172 12 4 4489 4659 289532109 289532275 4.020000e-51 213
12 TraesCS5A01G097100 chr1D 89.535 172 12 4 4489 4659 289597325 289597491 4.020000e-51 213
13 TraesCS5A01G097100 chr7A 89.017 173 16 3 4492 4663 732053482 732053312 1.450000e-50 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G097100 chr5A 137275077 137280207 5130 False 9476.00 9476 100.0000 1 5131 1 chr5A.!!$F1 5130
1 TraesCS5A01G097100 chr5D 123880854 123886004 5150 False 4034.50 4375 95.2220 1 5131 2 chr5D.!!$F1 5130
2 TraesCS5A01G097100 chr5B 136619454 136628669 9215 False 1756.75 3125 92.4805 370 5131 4 chr5B.!!$F1 4761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 3324 0.394352 ACGGATGGCAAAGTGGATCC 60.394 55.0 4.2 4.2 0.0 3.36 F
2087 4684 0.321346 TTTGGCTCGTCTGCTCATCA 59.679 50.0 0.0 0.0 0.0 3.07 F
4031 8771 0.108520 TTATCCGCACCCTCGTTGAC 60.109 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 4714 1.672356 GCACTCAACGTGGCAGGAT 60.672 57.895 14.98 0.0 43.97 3.24 R
4037 8777 1.380302 CTGCCCTGCCAAACTACCT 59.620 57.895 0.00 0.0 0.00 3.08 R
4978 9749 1.561076 TCTGCTGGTGCTTGGATATGT 59.439 47.619 0.00 0.0 40.48 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 95 4.832266 TGAAGTGTAAATGGGCACTGAATT 59.168 37.500 0.00 0.00 44.21 2.17
94 96 4.789012 AGTGTAAATGGGCACTGAATTG 57.211 40.909 0.00 0.00 43.45 2.32
207 209 7.504574 TGAAGACGTATCAAGACCTATCCATTA 59.495 37.037 1.27 0.00 0.00 1.90
215 217 5.835819 TCAAGACCTATCCATTAGTCAGAGG 59.164 44.000 0.00 0.00 0.00 3.69
216 218 5.411103 AGACCTATCCATTAGTCAGAGGT 57.589 43.478 0.00 0.00 38.53 3.85
235 237 5.765182 AGAGGTCAAATTGTTGAGTAGGTTG 59.235 40.000 0.00 0.00 44.44 3.77
267 269 5.012046 CCTGCCATCCACAGAAGTATGTATA 59.988 44.000 0.00 0.00 37.32 1.47
307 309 1.163554 CAAGTGGCCTCTCAAAGAGC 58.836 55.000 7.99 0.00 40.98 4.09
341 343 5.514169 TCTCTAGAGTGATGAAGGACACAT 58.486 41.667 19.21 0.00 39.18 3.21
445 447 1.873863 CGATCTGATAGCCGCGGTA 59.126 57.895 28.70 17.82 0.00 4.02
448 450 1.540267 GATCTGATAGCCGCGGTAAGA 59.460 52.381 28.70 20.97 0.00 2.10
468 470 9.110502 GGTAAGAGGTCAATTTAGGATTAACTG 57.889 37.037 0.00 0.00 0.00 3.16
616 618 4.691860 CCAATTATGGCTGCTATGTAGC 57.308 45.455 8.91 5.09 44.04 3.58
617 619 3.125829 CCAATTATGGCTGCTATGTAGCG 59.874 47.826 8.91 4.09 45.50 4.26
651 1173 4.907010 GTCGATACAACGAATCTGCTAGAG 59.093 45.833 0.00 0.00 43.75 2.43
666 1188 4.093743 TGCTAGAGTTGGTCTAATGGTCA 58.906 43.478 0.00 0.00 37.32 4.02
673 1195 3.981071 TGGTCTAATGGTCAAGTGGAG 57.019 47.619 0.00 0.00 0.00 3.86
689 1211 4.837972 AGTGGAGCTCTCACCTTTTTATC 58.162 43.478 23.51 2.14 35.87 1.75
731 3324 0.394352 ACGGATGGCAAAGTGGATCC 60.394 55.000 4.20 4.20 0.00 3.36
811 3407 1.542108 GCGGGAAGATGAGATGGAAGG 60.542 57.143 0.00 0.00 0.00 3.46
900 3496 2.290387 GGAACAAAACCCTCCTCTCCTC 60.290 54.545 0.00 0.00 0.00 3.71
901 3497 2.424684 ACAAAACCCTCCTCTCCTCT 57.575 50.000 0.00 0.00 0.00 3.69
902 3498 2.261729 ACAAAACCCTCCTCTCCTCTC 58.738 52.381 0.00 0.00 0.00 3.20
903 3499 1.557371 CAAAACCCTCCTCTCCTCTCC 59.443 57.143 0.00 0.00 0.00 3.71
904 3500 1.097722 AAACCCTCCTCTCCTCTCCT 58.902 55.000 0.00 0.00 0.00 3.69
966 3562 2.835431 CATCCGCTCTCCCCTCGT 60.835 66.667 0.00 0.00 0.00 4.18
1086 3682 4.914540 GCTTGCTTATCAGGCTACTTTTC 58.085 43.478 0.00 0.00 43.62 2.29
1098 3694 6.708054 TCAGGCTACTTTTCTTCTTCTTCTTG 59.292 38.462 0.00 0.00 0.00 3.02
1135 3731 2.484742 AACCCGAATCCTACGCTTTT 57.515 45.000 0.00 0.00 0.00 2.27
1145 3741 2.167900 TCCTACGCTTTTAGCTTCCCTC 59.832 50.000 0.00 0.00 39.60 4.30
1195 3791 2.478709 CCGATCCGATCCGATCATTCTC 60.479 54.545 19.69 0.00 38.91 2.87
1257 3853 2.679996 GTTGGTGGGTCCCATGCC 60.680 66.667 15.49 12.44 35.28 4.40
1314 3910 2.433239 GGATGGAATGGATGCTTGCTTT 59.567 45.455 0.00 0.00 0.00 3.51
1373 3969 9.338291 CTTTCCTCTTTTAGCGGTTTAATTAAC 57.662 33.333 0.00 0.00 35.94 2.01
1428 4024 2.124695 GGCGGGGAGTTTAGGCTG 60.125 66.667 0.00 0.00 0.00 4.85
1452 4049 7.532571 TGAGAATTGCATATTCAAGTGTTCAG 58.467 34.615 17.89 0.00 0.00 3.02
1459 4056 1.024271 TTCAAGTGTTCAGCCAGTGC 58.976 50.000 0.00 0.00 37.95 4.40
1524 4121 7.518188 AGATGGGTGGTATTTAGTTCATAAGG 58.482 38.462 0.00 0.00 0.00 2.69
2012 4609 5.465056 GCTTACCTCAGAGAATACATTCTGC 59.535 44.000 9.16 0.28 46.47 4.26
2036 4633 3.298489 CGGTGTTCGTGTTGTATATGC 57.702 47.619 0.00 0.00 0.00 3.14
2087 4684 0.321346 TTTGGCTCGTCTGCTCATCA 59.679 50.000 0.00 0.00 0.00 3.07
2342 4939 6.472163 CAGTTTCTGTTATGTTGCGTTTTTCT 59.528 34.615 0.00 0.00 0.00 2.52
2406 5003 8.723942 ATTTCGTCTCATTTTTACTAGCTGAT 57.276 30.769 0.00 0.00 0.00 2.90
2441 5038 9.589461 TTTCTATGATAGGTTTTGTTGGGTTTA 57.411 29.630 0.00 0.00 0.00 2.01
2539 5221 5.598416 ATGGCACTTTTAGCTTTTATCCC 57.402 39.130 0.00 0.00 0.00 3.85
2770 7507 6.198650 CATCAGATTGTACAGGATGCAAAA 57.801 37.500 12.72 0.00 42.53 2.44
2915 7652 4.984194 ACTGGCTGCAGTCAAACA 57.016 50.000 23.37 9.39 0.00 2.83
2947 7684 9.476202 GCAGAAACTAAACAAATTGGTAATTCT 57.524 29.630 0.00 0.00 32.77 2.40
3207 7947 1.389555 GGAGCCTGTTATTTTCCCCG 58.610 55.000 0.00 0.00 0.00 5.73
3407 8147 3.190118 CCAAGAGAAATGTCAAGAGGCAC 59.810 47.826 0.00 0.00 0.00 5.01
3570 8310 3.222173 AGGGTCAAGTTGCACATGTTA 57.778 42.857 0.00 0.00 0.00 2.41
3661 8401 1.019278 TGCCTCCGAAATGAGAACGC 61.019 55.000 0.00 0.00 34.11 4.84
3713 8453 2.094545 GTCCAATGGCTGTGGTGATTTC 60.095 50.000 0.00 0.00 37.43 2.17
3776 8516 2.418197 GGAATCCCGATCACAAAGTCGA 60.418 50.000 0.00 0.00 40.11 4.20
4031 8771 0.108520 TTATCCGCACCCTCGTTGAC 60.109 55.000 0.00 0.00 0.00 3.18
4198 8938 7.550196 CCAATATTCTTTGAAAGGGGAAACATG 59.450 37.037 4.94 0.00 0.00 3.21
4534 9292 9.440761 AATATAAGTCCTTGTAGAGATTCCACT 57.559 33.333 0.00 0.00 0.00 4.00
4549 9307 7.500892 AGAGATTCCACTATAGACTACACACAG 59.499 40.741 6.78 0.00 0.00 3.66
4561 9319 9.998106 ATAGACTACACACAGAACAAAATAAGT 57.002 29.630 0.00 0.00 0.00 2.24
4562 9320 8.142994 AGACTACACACAGAACAAAATAAGTG 57.857 34.615 0.00 0.00 0.00 3.16
4563 9321 7.985184 AGACTACACACAGAACAAAATAAGTGA 59.015 33.333 0.00 0.00 0.00 3.41
4582 9346 5.767670 AGTGAACCTATACTCTAGAAGGCA 58.232 41.667 7.94 0.00 31.98 4.75
4583 9347 6.195700 AGTGAACCTATACTCTAGAAGGCAA 58.804 40.000 7.94 0.00 31.98 4.52
4584 9348 6.097129 AGTGAACCTATACTCTAGAAGGCAAC 59.903 42.308 7.94 4.81 31.98 4.17
4585 9349 5.067413 TGAACCTATACTCTAGAAGGCAACG 59.933 44.000 7.94 0.00 46.39 4.10
4592 9356 5.246145 ACTCTAGAAGGCAACGTGTATAC 57.754 43.478 0.00 0.00 46.39 1.47
4735 9505 6.206634 GTGGGATGAAGTTGAACATGAAAGTA 59.793 38.462 0.00 0.00 0.00 2.24
4740 9510 6.494842 TGAAGTTGAACATGAAAGTAACTGC 58.505 36.000 0.00 2.31 0.00 4.40
4741 9511 6.318648 TGAAGTTGAACATGAAAGTAACTGCT 59.681 34.615 0.00 0.00 0.00 4.24
4742 9512 7.497579 TGAAGTTGAACATGAAAGTAACTGCTA 59.502 33.333 0.00 0.00 0.00 3.49
4743 9513 7.190920 AGTTGAACATGAAAGTAACTGCTAC 57.809 36.000 0.00 0.00 0.00 3.58
4744 9514 6.992715 AGTTGAACATGAAAGTAACTGCTACT 59.007 34.615 0.00 0.00 43.06 2.57
4745 9515 6.785488 TGAACATGAAAGTAACTGCTACTG 57.215 37.500 0.00 0.00 40.14 2.74
4978 9749 4.413189 ACAGATATGAATGACCCACATGGA 59.587 41.667 0.00 0.00 39.39 3.41
5127 9900 8.043113 ACTCTATCATTTCAATAACTCTGCACA 58.957 33.333 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.739331 AAAATGACCATACAAAAAGTCCCA 57.261 33.333 0.00 0.00 0.00 4.37
58 60 9.357652 CCCATTTACACTTCATGTTTTCTATTG 57.642 33.333 0.00 0.00 43.19 1.90
71 73 5.048083 TCAATTCAGTGCCCATTTACACTTC 60.048 40.000 0.00 0.00 44.59 3.01
74 76 4.782019 TCAATTCAGTGCCCATTTACAC 57.218 40.909 0.00 0.00 37.05 2.90
93 95 9.793259 AAAGATTTTTGAGTGACTAACCTATCA 57.207 29.630 0.00 0.00 0.00 2.15
166 168 9.669353 GATACGTCTTCAATGCATCAATAATTT 57.331 29.630 0.00 0.00 0.00 1.82
183 185 6.732896 AATGGATAGGTCTTGATACGTCTT 57.267 37.500 0.00 0.00 0.00 3.01
207 209 5.041191 ACTCAACAATTTGACCTCTGACT 57.959 39.130 2.79 0.00 36.79 3.41
215 217 5.971202 CACACAACCTACTCAACAATTTGAC 59.029 40.000 2.79 0.00 36.79 3.18
216 218 5.067153 CCACACAACCTACTCAACAATTTGA 59.933 40.000 2.79 0.00 39.55 2.69
307 309 5.860941 TCACTCTAGAGAAATAGGCCAAG 57.139 43.478 26.57 0.00 0.00 3.61
341 343 0.538584 ATCTTGCAGGACGATGAGCA 59.461 50.000 0.00 0.00 34.79 4.26
420 422 2.608261 GCGGCTATCAGATCGCTAAAGT 60.608 50.000 6.85 0.00 44.10 2.66
445 447 9.454859 CTTCAGTTAATCCTAAATTGACCTCTT 57.545 33.333 0.00 0.00 0.00 2.85
448 450 9.588096 AAACTTCAGTTAATCCTAAATTGACCT 57.412 29.630 0.00 0.00 37.25 3.85
614 616 1.507974 ATCGACGATCGTCATCCGCT 61.508 55.000 38.62 20.30 44.77 5.52
615 617 0.165295 TATCGACGATCGTCATCCGC 59.835 55.000 38.62 18.53 44.77 5.54
616 618 1.193874 TGTATCGACGATCGTCATCCG 59.806 52.381 38.62 28.53 44.77 4.18
617 619 2.963498 TGTATCGACGATCGTCATCC 57.037 50.000 38.62 25.68 44.77 3.51
619 621 2.286025 TCGTTGTATCGACGATCGTCAT 59.714 45.455 38.62 31.29 44.04 3.06
620 622 1.660104 TCGTTGTATCGACGATCGTCA 59.340 47.619 38.62 28.15 44.04 4.35
621 623 2.357954 TCGTTGTATCGACGATCGTC 57.642 50.000 33.22 33.22 44.04 4.20
635 1157 3.589988 ACCAACTCTAGCAGATTCGTTG 58.410 45.455 0.00 0.00 31.56 4.10
636 1158 3.511934 AGACCAACTCTAGCAGATTCGTT 59.488 43.478 0.00 0.00 0.00 3.85
643 1165 4.160439 TGACCATTAGACCAACTCTAGCAG 59.840 45.833 0.00 0.00 32.75 4.24
651 1173 4.003648 CTCCACTTGACCATTAGACCAAC 58.996 47.826 0.00 0.00 0.00 3.77
666 1188 3.584733 AAAAAGGTGAGAGCTCCACTT 57.415 42.857 25.03 19.09 35.05 3.16
673 1195 7.604545 ACTTTGACTAGATAAAAAGGTGAGAGC 59.395 37.037 0.00 0.00 34.61 4.09
731 3324 4.364415 TTTCCAAACGTTCAAGTTGAGG 57.636 40.909 0.00 3.06 34.14 3.86
779 3375 3.048337 TCTTCCCGCAAGAATACGTTT 57.952 42.857 0.00 0.00 38.26 3.60
780 3376 2.754946 TCTTCCCGCAAGAATACGTT 57.245 45.000 0.00 0.00 38.26 3.99
781 3377 2.167693 TCATCTTCCCGCAAGAATACGT 59.832 45.455 0.00 0.00 44.66 3.57
791 3387 1.542108 CCTTCCATCTCATCTTCCCGC 60.542 57.143 0.00 0.00 0.00 6.13
900 3496 1.339535 GCTTTGGTGGAAGGAGAGGAG 60.340 57.143 0.00 0.00 0.00 3.69
901 3497 0.693049 GCTTTGGTGGAAGGAGAGGA 59.307 55.000 0.00 0.00 0.00 3.71
902 3498 0.322906 GGCTTTGGTGGAAGGAGAGG 60.323 60.000 0.00 0.00 0.00 3.69
903 3499 0.674895 CGGCTTTGGTGGAAGGAGAG 60.675 60.000 0.00 0.00 0.00 3.20
904 3500 1.374947 CGGCTTTGGTGGAAGGAGA 59.625 57.895 0.00 0.00 0.00 3.71
1074 3670 6.484977 ACAAGAAGAAGAAGAAAAGTAGCCTG 59.515 38.462 0.00 0.00 0.00 4.85
1082 3678 4.260620 CGGCGAACAAGAAGAAGAAGAAAA 60.261 41.667 0.00 0.00 0.00 2.29
1086 3682 2.096713 CACGGCGAACAAGAAGAAGAAG 60.097 50.000 16.62 0.00 0.00 2.85
1098 3694 0.237235 TTTGATTGCTCACGGCGAAC 59.763 50.000 16.62 0.00 45.43 3.95
1135 3731 1.202687 CGGATGCATTGAGGGAAGCTA 60.203 52.381 0.00 0.00 0.00 3.32
1314 3910 0.032952 AACACGCGTGGCTAAGAAGA 59.967 50.000 39.21 0.00 34.19 2.87
1373 3969 0.529337 CCCGACATGCTGCTAGTCAG 60.529 60.000 19.49 11.52 45.62 3.51
1428 4024 6.471519 GCTGAACACTTGAATATGCAATTCTC 59.528 38.462 16.99 9.43 0.00 2.87
1459 4056 7.717568 ACTACTTGTAGATACTAGCATGGTTG 58.282 38.462 13.95 3.24 33.32 3.77
1524 4121 9.180678 CATTAGTATGGACAGAAAACAACAAAC 57.819 33.333 0.00 0.00 0.00 2.93
1706 4303 4.460034 TCTGTACTAACACTGGCATCGTTA 59.540 41.667 8.17 8.17 0.00 3.18
2036 4633 3.980646 TTGTTGTCATCGAAAAGGTGG 57.019 42.857 0.00 0.00 0.00 4.61
2087 4684 4.029520 AGCAATCTGTATCACCAGTCTCT 58.970 43.478 0.00 0.00 34.02 3.10
2099 4696 4.382362 CAGGATGACTCACAGCAATCTGTA 60.382 45.833 0.00 0.00 46.01 2.74
2117 4714 1.672356 GCACTCAACGTGGCAGGAT 60.672 57.895 14.98 0.00 43.97 3.24
2342 4939 5.636123 TCCAGCCTTAACTGATAAAACCAA 58.364 37.500 0.00 0.00 40.25 3.67
2520 5202 5.886474 AGGTAGGGATAAAAGCTAAAAGTGC 59.114 40.000 0.00 0.00 0.00 4.40
2526 5208 7.002276 GCCAATAAGGTAGGGATAAAAGCTAA 58.998 38.462 0.00 0.00 40.61 3.09
2530 5212 7.004086 TCATGCCAATAAGGTAGGGATAAAAG 58.996 38.462 0.00 0.00 40.61 2.27
2539 5221 4.641989 ACAAAGCTCATGCCAATAAGGTAG 59.358 41.667 0.00 0.00 40.80 3.18
2770 7507 1.133668 ACCTCAGTTTCCAGCTTTGCT 60.134 47.619 0.00 0.00 40.77 3.91
2915 7652 6.980397 CCAATTTGTTTAGTTTCTGCTTGAGT 59.020 34.615 0.00 0.00 0.00 3.41
2952 7692 9.925545 ACTAGAAAGGGGTAAAACTTAAAAGAA 57.074 29.630 0.00 0.00 0.00 2.52
2953 7693 9.346005 CACTAGAAAGGGGTAAAACTTAAAAGA 57.654 33.333 0.00 0.00 0.00 2.52
2954 7694 8.573885 CCACTAGAAAGGGGTAAAACTTAAAAG 58.426 37.037 0.00 0.00 41.94 2.27
2969 7709 3.009033 TCCACATGAACCCACTAGAAAGG 59.991 47.826 0.00 0.00 0.00 3.11
3022 7762 5.126061 GGAAGTGTATCTGCACCATGAAAAT 59.874 40.000 0.00 0.00 40.04 1.82
3207 7947 8.409371 GGAAATCAATATCCTTCTTTGGTCTTC 58.591 37.037 0.00 0.00 32.75 2.87
3407 8147 2.401766 GCCTGACGACCTGCCATTG 61.402 63.158 0.00 0.00 0.00 2.82
3570 8310 5.856126 TTAAGATCGAGTTTGCGTGAAAT 57.144 34.783 0.00 0.00 0.00 2.17
3661 8401 9.098355 TCAAATCATTCTTTCCTGAACTATACG 57.902 33.333 0.00 0.00 0.00 3.06
3776 8516 3.672808 CTCCAAGTCTGATGTCTGCTTT 58.327 45.455 0.00 0.00 0.00 3.51
4037 8777 1.380302 CTGCCCTGCCAAACTACCT 59.620 57.895 0.00 0.00 0.00 3.08
4259 9017 2.426431 TCCCAGTTACTTTCCCCTCA 57.574 50.000 0.00 0.00 0.00 3.86
4558 9316 6.195700 TGCCTTCTAGAGTATAGGTTCACTT 58.804 40.000 9.46 0.00 0.00 3.16
4560 9318 6.274579 GTTGCCTTCTAGAGTATAGGTTCAC 58.725 44.000 9.46 1.96 0.00 3.18
4561 9319 5.067413 CGTTGCCTTCTAGAGTATAGGTTCA 59.933 44.000 9.46 0.00 0.00 3.18
4562 9320 5.067544 ACGTTGCCTTCTAGAGTATAGGTTC 59.932 44.000 9.46 1.56 0.00 3.62
4563 9321 4.954826 ACGTTGCCTTCTAGAGTATAGGTT 59.045 41.667 9.46 0.00 0.00 3.50
4576 9340 2.538449 CGGATGTATACACGTTGCCTTC 59.462 50.000 7.96 0.00 0.00 3.46
4582 9346 6.039047 AGACTACATTCGGATGTATACACGTT 59.961 38.462 16.89 0.00 45.20 3.99
4583 9347 5.530171 AGACTACATTCGGATGTATACACGT 59.470 40.000 16.89 10.75 45.20 4.49
4584 9348 5.998553 AGACTACATTCGGATGTATACACG 58.001 41.667 16.89 8.61 45.20 4.49
4585 9349 9.909644 ATAAAGACTACATTCGGATGTATACAC 57.090 33.333 16.89 8.77 45.20 2.90
4592 9356 7.658261 TCCACTATAAAGACTACATTCGGATG 58.342 38.462 0.88 0.88 39.25 3.51
4625 9389 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
4638 9402 5.708544 TCAATATACTCCCTCCGTTCCTAA 58.291 41.667 0.00 0.00 0.00 2.69
4686 9450 4.996113 CAGCGAAACACGTTGCTT 57.004 50.000 0.00 0.00 44.86 3.91
4740 9510 2.168106 AGCAGTGAGATGGCTTCAGTAG 59.832 50.000 0.00 0.00 33.21 2.57
4741 9511 2.182827 AGCAGTGAGATGGCTTCAGTA 58.817 47.619 0.00 0.00 33.21 2.74
4742 9512 0.982704 AGCAGTGAGATGGCTTCAGT 59.017 50.000 0.00 0.00 33.21 3.41
4743 9513 2.975732 TAGCAGTGAGATGGCTTCAG 57.024 50.000 0.00 0.00 39.01 3.02
4744 9514 3.701205 TTTAGCAGTGAGATGGCTTCA 57.299 42.857 0.00 0.00 39.01 3.02
4745 9515 4.880696 AGAATTTAGCAGTGAGATGGCTTC 59.119 41.667 0.00 0.00 39.01 3.86
4868 9638 4.492570 GCATTAGTGTGCACTCGATGTTAC 60.493 45.833 25.16 13.18 44.43 2.50
4978 9749 1.561076 TCTGCTGGTGCTTGGATATGT 59.439 47.619 0.00 0.00 40.48 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.