Multiple sequence alignment - TraesCS5A01G096900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G096900 chr5A 100.000 2748 0 0 1 2748 136567400 136570147 0.000000e+00 5075
1 TraesCS5A01G096900 chr5A 94.302 1878 69 12 645 2496 69535795 69537660 0.000000e+00 2841
2 TraesCS5A01G096900 chr5A 94.872 234 12 0 1 234 259561068 259561301 1.550000e-97 366
3 TraesCS5A01G096900 chr5A 96.053 76 3 0 2306 2381 492055885 492055810 1.030000e-24 124
4 TraesCS5A01G096900 chr4A 95.053 2183 81 12 592 2748 566590024 566587843 0.000000e+00 3408
5 TraesCS5A01G096900 chr4A 94.305 1791 76 10 592 2357 566610726 566608937 0.000000e+00 2719
6 TraesCS5A01G096900 chr4A 93.004 243 15 2 4 245 541013355 541013114 1.210000e-93 353
7 TraesCS5A01G096900 chr4A 91.968 249 19 1 4 251 332459651 332459403 5.630000e-92 348
8 TraesCS5A01G096900 chr3A 94.476 1937 79 6 588 2499 128659599 128657666 0.000000e+00 2959
9 TraesCS5A01G096900 chr3A 91.341 820 65 1 588 1401 381752591 381751772 0.000000e+00 1116
10 TraesCS5A01G096900 chr3A 96.396 222 8 0 13 234 441749814 441749593 1.550000e-97 366
11 TraesCS5A01G096900 chr3A 94.468 235 12 1 1 234 95916470 95916704 7.230000e-96 361
12 TraesCS5A01G096900 chr3A 93.697 238 13 2 4 239 366290051 366289814 3.370000e-94 355
13 TraesCS5A01G096900 chr3B 91.017 2182 151 25 603 2748 379653319 379655491 0.000000e+00 2902
14 TraesCS5A01G096900 chr3B 91.130 1973 142 17 603 2544 367032886 367030916 0.000000e+00 2643
15 TraesCS5A01G096900 chr2A 93.957 1936 77 5 585 2496 276858462 276860381 0.000000e+00 2891
16 TraesCS5A01G096900 chr2A 89.614 414 36 5 237 643 293738397 293738810 1.130000e-143 520
17 TraesCS5A01G096900 chr2A 95.614 228 10 0 6 233 375344177 375344404 1.550000e-97 366
18 TraesCS5A01G096900 chr2A 94.444 234 13 0 1 234 740414106 740414339 7.230000e-96 361
19 TraesCS5A01G096900 chr2A 92.105 76 6 0 2306 2381 131912240 131912165 1.040000e-19 108
20 TraesCS5A01G096900 chr6A 90.875 2137 151 10 640 2748 509827191 509825071 0.000000e+00 2826
21 TraesCS5A01G096900 chr6A 88.376 542 54 3 588 1120 214076433 214075892 0.000000e+00 643
22 TraesCS5A01G096900 chr6A 93.207 368 21 2 238 603 222927007 222927372 3.110000e-149 538
23 TraesCS5A01G096900 chr6A 94.444 234 13 0 1 234 97789223 97789456 7.230000e-96 361
24 TraesCS5A01G096900 chr7B 90.317 2179 158 30 592 2737 722093944 722096102 0.000000e+00 2806
25 TraesCS5A01G096900 chr7B 89.598 423 32 8 239 651 430193031 430192611 6.740000e-146 527
26 TraesCS5A01G096900 chr5B 90.132 2199 147 21 589 2748 328273367 328275534 0.000000e+00 2795
27 TraesCS5A01G096900 chr5B 94.737 76 4 0 2306 2381 414442876 414442801 4.810000e-23 119
28 TraesCS5A01G096900 chr6B 90.993 1943 144 20 629 2544 129700716 129702654 0.000000e+00 2590
29 TraesCS5A01G096900 chr6D 90.380 1923 119 19 859 2748 17043132 17041243 0.000000e+00 2466
30 TraesCS5A01G096900 chr6D 87.435 382 28 11 2380 2748 248006524 248006898 3.270000e-114 422
31 TraesCS5A01G096900 chr1D 91.921 458 34 2 237 692 94527750 94528206 2.980000e-179 638
32 TraesCS5A01G096900 chr5D 89.770 479 34 9 238 705 127031452 127031926 1.410000e-167 599
33 TraesCS5A01G096900 chr5D 93.011 372 22 3 236 603 289536556 289536927 8.660000e-150 540
34 TraesCS5A01G096900 chr7D 93.750 368 20 2 237 601 287554189 287554556 1.440000e-152 549
35 TraesCS5A01G096900 chr4D 93.261 371 21 3 237 603 104376042 104375672 6.690000e-151 544
36 TraesCS5A01G096900 chr4D 86.400 375 39 5 2380 2748 332635586 332635218 1.530000e-107 399
37 TraesCS5A01G096900 chr2D 93.029 373 22 3 238 606 145928942 145928570 2.410000e-150 542
38 TraesCS5A01G096900 chr3D 93.011 372 21 3 237 603 391653284 391653655 3.110000e-149 538
39 TraesCS5A01G096900 chr4B 86.944 360 29 12 2401 2748 410974059 410973706 3.320000e-104 388
40 TraesCS5A01G096900 chr1A 86.957 322 29 9 1086 1406 562923347 562923038 1.570000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G096900 chr5A 136567400 136570147 2747 False 5075 5075 100.000 1 2748 1 chr5A.!!$F2 2747
1 TraesCS5A01G096900 chr5A 69535795 69537660 1865 False 2841 2841 94.302 645 2496 1 chr5A.!!$F1 1851
2 TraesCS5A01G096900 chr4A 566587843 566590024 2181 True 3408 3408 95.053 592 2748 1 chr4A.!!$R3 2156
3 TraesCS5A01G096900 chr4A 566608937 566610726 1789 True 2719 2719 94.305 592 2357 1 chr4A.!!$R4 1765
4 TraesCS5A01G096900 chr3A 128657666 128659599 1933 True 2959 2959 94.476 588 2499 1 chr3A.!!$R1 1911
5 TraesCS5A01G096900 chr3A 381751772 381752591 819 True 1116 1116 91.341 588 1401 1 chr3A.!!$R3 813
6 TraesCS5A01G096900 chr3B 379653319 379655491 2172 False 2902 2902 91.017 603 2748 1 chr3B.!!$F1 2145
7 TraesCS5A01G096900 chr3B 367030916 367032886 1970 True 2643 2643 91.130 603 2544 1 chr3B.!!$R1 1941
8 TraesCS5A01G096900 chr2A 276858462 276860381 1919 False 2891 2891 93.957 585 2496 1 chr2A.!!$F1 1911
9 TraesCS5A01G096900 chr6A 509825071 509827191 2120 True 2826 2826 90.875 640 2748 1 chr6A.!!$R2 2108
10 TraesCS5A01G096900 chr6A 214075892 214076433 541 True 643 643 88.376 588 1120 1 chr6A.!!$R1 532
11 TraesCS5A01G096900 chr7B 722093944 722096102 2158 False 2806 2806 90.317 592 2737 1 chr7B.!!$F1 2145
12 TraesCS5A01G096900 chr5B 328273367 328275534 2167 False 2795 2795 90.132 589 2748 1 chr5B.!!$F1 2159
13 TraesCS5A01G096900 chr6B 129700716 129702654 1938 False 2590 2590 90.993 629 2544 1 chr6B.!!$F1 1915
14 TraesCS5A01G096900 chr6D 17041243 17043132 1889 True 2466 2466 90.380 859 2748 1 chr6D.!!$R1 1889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.032130 CAGACGTATGATCCGTGGGG 59.968 60.000 3.55 0.0 38.92 4.96 F
554 555 0.107017 GGCCTGGCTAGCAATCTCAA 60.107 55.000 19.68 0.0 0.00 3.02 F
556 557 1.403323 GCCTGGCTAGCAATCTCAAAC 59.597 52.381 18.24 0.0 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1715 4.261741 CCATGTATTTACAAGCATGAGGGC 60.262 45.833 0.0 0.0 40.61 5.19 R
1673 1716 5.132502 TCCATGTATTTACAAGCATGAGGG 58.867 41.667 0.0 0.0 40.61 4.30 R
1810 1856 6.017934 AGTGCCATTTCGTGATAACATCATAC 60.018 38.462 0.0 0.0 42.04 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.639099 TCGGAAGACGTAGGAGTGT 57.361 52.632 0.00 0.00 44.69 3.55
21 22 1.446907 TCGGAAGACGTAGGAGTGTC 58.553 55.000 0.00 0.00 44.69 3.67
22 23 0.096628 CGGAAGACGTAGGAGTGTCG 59.903 60.000 0.00 0.00 40.05 4.35
23 24 0.450983 GGAAGACGTAGGAGTGTCGG 59.549 60.000 0.00 0.00 40.05 4.79
24 25 1.446907 GAAGACGTAGGAGTGTCGGA 58.553 55.000 0.00 0.00 40.05 4.55
25 26 1.808945 GAAGACGTAGGAGTGTCGGAA 59.191 52.381 0.00 0.00 40.05 4.30
26 27 2.125773 AGACGTAGGAGTGTCGGAAT 57.874 50.000 0.00 0.00 40.05 3.01
27 28 1.743958 AGACGTAGGAGTGTCGGAATG 59.256 52.381 0.00 0.00 40.05 2.67
28 29 0.172803 ACGTAGGAGTGTCGGAATGC 59.827 55.000 0.00 0.00 0.00 3.56
29 30 0.172578 CGTAGGAGTGTCGGAATGCA 59.827 55.000 0.00 0.00 0.00 3.96
30 31 1.403647 CGTAGGAGTGTCGGAATGCAA 60.404 52.381 0.00 0.00 0.00 4.08
31 32 2.695359 GTAGGAGTGTCGGAATGCAAA 58.305 47.619 0.00 0.00 0.00 3.68
32 33 2.270352 AGGAGTGTCGGAATGCAAAA 57.730 45.000 0.00 0.00 0.00 2.44
33 34 1.880027 AGGAGTGTCGGAATGCAAAAC 59.120 47.619 0.00 0.00 0.00 2.43
34 35 1.399727 GGAGTGTCGGAATGCAAAACG 60.400 52.381 0.00 0.00 0.00 3.60
35 36 0.591170 AGTGTCGGAATGCAAAACGG 59.409 50.000 0.00 0.00 0.00 4.44
36 37 0.589223 GTGTCGGAATGCAAAACGGA 59.411 50.000 0.00 0.00 0.00 4.69
37 38 0.589223 TGTCGGAATGCAAAACGGAC 59.411 50.000 15.98 15.98 35.49 4.79
38 39 0.589223 GTCGGAATGCAAAACGGACA 59.411 50.000 17.10 0.00 35.20 4.02
39 40 1.002251 GTCGGAATGCAAAACGGACAA 60.002 47.619 17.10 0.00 35.20 3.18
40 41 1.002251 TCGGAATGCAAAACGGACAAC 60.002 47.619 0.00 0.00 0.00 3.32
51 52 1.211709 CGGACAACGGGGAAAATGC 59.788 57.895 0.00 0.00 39.42 3.56
52 53 1.241315 CGGACAACGGGGAAAATGCT 61.241 55.000 0.00 0.00 39.42 3.79
53 54 0.526211 GGACAACGGGGAAAATGCTC 59.474 55.000 0.00 0.00 0.00 4.26
54 55 0.168128 GACAACGGGGAAAATGCTCG 59.832 55.000 0.00 0.00 0.00 5.03
55 56 1.241315 ACAACGGGGAAAATGCTCGG 61.241 55.000 0.00 0.00 0.00 4.63
56 57 0.958382 CAACGGGGAAAATGCTCGGA 60.958 55.000 0.00 0.00 0.00 4.55
57 58 0.034477 AACGGGGAAAATGCTCGGAT 60.034 50.000 0.00 0.00 0.00 4.18
58 59 0.748005 ACGGGGAAAATGCTCGGATG 60.748 55.000 0.00 0.00 0.00 3.51
59 60 1.735973 GGGGAAAATGCTCGGATGC 59.264 57.895 0.00 0.00 0.00 3.91
67 68 3.300711 TGCTCGGATGCATGAGATG 57.699 52.632 16.17 5.91 38.12 2.90
68 69 0.754472 TGCTCGGATGCATGAGATGA 59.246 50.000 16.17 1.46 38.12 2.92
69 70 1.139455 TGCTCGGATGCATGAGATGAA 59.861 47.619 16.17 0.00 38.12 2.57
70 71 1.530293 GCTCGGATGCATGAGATGAAC 59.470 52.381 16.17 0.00 34.04 3.18
71 72 2.830104 CTCGGATGCATGAGATGAACA 58.170 47.619 2.46 0.00 34.04 3.18
72 73 2.543012 CTCGGATGCATGAGATGAACAC 59.457 50.000 2.46 0.00 34.04 3.32
73 74 1.259770 CGGATGCATGAGATGAACACG 59.740 52.381 2.46 0.00 0.00 4.49
74 75 2.283298 GGATGCATGAGATGAACACGT 58.717 47.619 2.46 0.00 0.00 4.49
75 76 3.457234 GGATGCATGAGATGAACACGTA 58.543 45.455 2.46 0.00 0.00 3.57
76 77 4.060900 GGATGCATGAGATGAACACGTAT 58.939 43.478 2.46 0.00 0.00 3.06
77 78 4.084171 GGATGCATGAGATGAACACGTATG 60.084 45.833 2.46 0.00 0.00 2.39
78 79 2.609002 TGCATGAGATGAACACGTATGC 59.391 45.455 0.00 7.10 39.72 3.14
79 80 2.609002 GCATGAGATGAACACGTATGCA 59.391 45.455 8.79 0.00 39.25 3.96
80 81 3.063861 GCATGAGATGAACACGTATGCAA 59.936 43.478 8.79 0.00 39.25 4.08
81 82 4.437255 GCATGAGATGAACACGTATGCAAA 60.437 41.667 8.79 0.00 39.25 3.68
82 83 5.731406 GCATGAGATGAACACGTATGCAAAT 60.731 40.000 8.79 0.00 39.25 2.32
83 84 5.220557 TGAGATGAACACGTATGCAAATG 57.779 39.130 0.00 0.00 0.00 2.32
84 85 4.934602 TGAGATGAACACGTATGCAAATGA 59.065 37.500 0.00 0.00 0.00 2.57
85 86 5.063817 TGAGATGAACACGTATGCAAATGAG 59.936 40.000 0.00 0.00 0.00 2.90
86 87 5.178061 AGATGAACACGTATGCAAATGAGA 58.822 37.500 0.00 0.00 0.00 3.27
87 88 5.819379 AGATGAACACGTATGCAAATGAGAT 59.181 36.000 0.00 0.00 0.00 2.75
88 89 5.220557 TGAACACGTATGCAAATGAGATG 57.779 39.130 0.00 0.00 0.00 2.90
89 90 3.680642 ACACGTATGCAAATGAGATGC 57.319 42.857 0.00 0.00 44.08 3.91
98 99 4.301637 GCAAATGAGATGCACATGATGA 57.698 40.909 0.00 0.00 43.29 2.92
99 100 4.042398 GCAAATGAGATGCACATGATGAC 58.958 43.478 0.00 0.00 43.29 3.06
100 101 4.439563 GCAAATGAGATGCACATGATGACA 60.440 41.667 0.00 0.00 43.29 3.58
101 102 5.736207 GCAAATGAGATGCACATGATGACAT 60.736 40.000 0.00 2.24 43.29 3.06
102 103 7.707169 GCAAATGAGATGCACATGATGACATG 61.707 42.308 0.00 8.38 44.71 3.21
103 104 9.747457 GCAAATGAGATGCACATGATGACATGA 62.747 40.741 15.53 0.00 46.99 3.07
117 118 7.753309 TGATGACATGATATGAAATGCATGA 57.247 32.000 0.00 0.00 40.58 3.07
118 119 7.590279 TGATGACATGATATGAAATGCATGAC 58.410 34.615 0.00 0.00 40.58 3.06
119 120 5.992729 TGACATGATATGAAATGCATGACG 58.007 37.500 0.00 0.00 40.58 4.35
120 121 5.528320 TGACATGATATGAAATGCATGACGT 59.472 36.000 0.00 1.50 40.58 4.34
121 122 5.754778 ACATGATATGAAATGCATGACGTG 58.245 37.500 0.00 1.89 40.58 4.49
122 123 5.528320 ACATGATATGAAATGCATGACGTGA 59.472 36.000 0.00 0.00 40.58 4.35
123 124 6.038492 ACATGATATGAAATGCATGACGTGAA 59.962 34.615 0.00 0.00 40.58 3.18
124 125 5.809464 TGATATGAAATGCATGACGTGAAC 58.191 37.500 0.00 0.00 37.87 3.18
125 126 5.353678 TGATATGAAATGCATGACGTGAACA 59.646 36.000 0.00 0.00 37.87 3.18
126 127 3.978718 TGAAATGCATGACGTGAACAA 57.021 38.095 0.00 0.00 0.00 2.83
127 128 4.298744 TGAAATGCATGACGTGAACAAA 57.701 36.364 0.00 0.00 0.00 2.83
128 129 4.676546 TGAAATGCATGACGTGAACAAAA 58.323 34.783 0.00 0.00 0.00 2.44
129 130 5.288015 TGAAATGCATGACGTGAACAAAAT 58.712 33.333 0.00 0.00 0.00 1.82
130 131 5.175308 TGAAATGCATGACGTGAACAAAATG 59.825 36.000 0.00 0.00 0.00 2.32
131 132 2.392821 TGCATGACGTGAACAAAATGC 58.607 42.857 0.00 0.00 40.57 3.56
132 133 2.223665 TGCATGACGTGAACAAAATGCA 60.224 40.909 0.00 4.14 45.83 3.96
133 134 2.793790 GCATGACGTGAACAAAATGCAA 59.206 40.909 0.00 0.00 40.05 4.08
134 135 3.244814 GCATGACGTGAACAAAATGCAAA 59.755 39.130 0.00 0.00 40.05 3.68
135 136 4.260132 GCATGACGTGAACAAAATGCAAAA 60.260 37.500 0.00 0.00 40.05 2.44
136 137 4.831741 TGACGTGAACAAAATGCAAAAC 57.168 36.364 0.00 0.00 0.00 2.43
137 138 4.237724 TGACGTGAACAAAATGCAAAACA 58.762 34.783 0.00 0.00 0.00 2.83
138 139 4.686091 TGACGTGAACAAAATGCAAAACAA 59.314 33.333 0.00 0.00 0.00 2.83
139 140 5.177511 TGACGTGAACAAAATGCAAAACAAA 59.822 32.000 0.00 0.00 0.00 2.83
140 141 5.616658 ACGTGAACAAAATGCAAAACAAAG 58.383 33.333 0.00 0.00 0.00 2.77
141 142 5.406780 ACGTGAACAAAATGCAAAACAAAGA 59.593 32.000 0.00 0.00 0.00 2.52
142 143 5.727592 CGTGAACAAAATGCAAAACAAAGAC 59.272 36.000 0.00 0.00 0.00 3.01
143 144 6.597614 GTGAACAAAATGCAAAACAAAGACA 58.402 32.000 0.00 0.00 0.00 3.41
144 145 7.074502 GTGAACAAAATGCAAAACAAAGACAA 58.925 30.769 0.00 0.00 0.00 3.18
145 146 7.589221 GTGAACAAAATGCAAAACAAAGACAAA 59.411 29.630 0.00 0.00 0.00 2.83
146 147 8.131100 TGAACAAAATGCAAAACAAAGACAAAA 58.869 25.926 0.00 0.00 0.00 2.44
147 148 7.850268 ACAAAATGCAAAACAAAGACAAAAC 57.150 28.000 0.00 0.00 0.00 2.43
148 149 6.860539 ACAAAATGCAAAACAAAGACAAAACC 59.139 30.769 0.00 0.00 0.00 3.27
149 150 5.559427 AATGCAAAACAAAGACAAAACCC 57.441 34.783 0.00 0.00 0.00 4.11
150 151 4.008074 TGCAAAACAAAGACAAAACCCA 57.992 36.364 0.00 0.00 0.00 4.51
151 152 4.389374 TGCAAAACAAAGACAAAACCCAA 58.611 34.783 0.00 0.00 0.00 4.12
152 153 4.214332 TGCAAAACAAAGACAAAACCCAAC 59.786 37.500 0.00 0.00 0.00 3.77
153 154 4.378978 GCAAAACAAAGACAAAACCCAACC 60.379 41.667 0.00 0.00 0.00 3.77
154 155 4.625607 AAACAAAGACAAAACCCAACCA 57.374 36.364 0.00 0.00 0.00 3.67
155 156 3.603158 ACAAAGACAAAACCCAACCAC 57.397 42.857 0.00 0.00 0.00 4.16
156 157 2.094442 ACAAAGACAAAACCCAACCACG 60.094 45.455 0.00 0.00 0.00 4.94
157 158 2.131776 AAGACAAAACCCAACCACGA 57.868 45.000 0.00 0.00 0.00 4.35
158 159 1.675552 AGACAAAACCCAACCACGAG 58.324 50.000 0.00 0.00 0.00 4.18
159 160 0.666374 GACAAAACCCAACCACGAGG 59.334 55.000 0.00 0.00 42.21 4.63
166 167 3.460648 CCAACCACGAGGGAATCTC 57.539 57.895 3.29 0.00 41.15 2.75
167 168 0.613260 CCAACCACGAGGGAATCTCA 59.387 55.000 3.29 0.00 42.55 3.27
168 169 1.210478 CCAACCACGAGGGAATCTCAT 59.790 52.381 3.29 0.00 42.55 2.90
169 170 2.434336 CCAACCACGAGGGAATCTCATA 59.566 50.000 3.29 0.00 42.55 2.15
170 171 3.118408 CCAACCACGAGGGAATCTCATAA 60.118 47.826 3.29 0.00 42.55 1.90
171 172 3.821421 ACCACGAGGGAATCTCATAAC 57.179 47.619 3.29 0.00 42.55 1.89
172 173 3.375699 ACCACGAGGGAATCTCATAACT 58.624 45.455 3.29 0.00 42.55 2.24
173 174 3.775316 ACCACGAGGGAATCTCATAACTT 59.225 43.478 3.29 0.00 42.55 2.66
174 175 4.960469 ACCACGAGGGAATCTCATAACTTA 59.040 41.667 3.29 0.00 42.55 2.24
175 176 5.069251 ACCACGAGGGAATCTCATAACTTAG 59.931 44.000 3.29 0.00 42.55 2.18
176 177 5.302059 CCACGAGGGAATCTCATAACTTAGA 59.698 44.000 0.00 0.00 42.55 2.10
177 178 6.442952 CACGAGGGAATCTCATAACTTAGAG 58.557 44.000 0.00 0.00 42.55 2.43
178 179 5.010213 ACGAGGGAATCTCATAACTTAGAGC 59.990 44.000 0.00 0.00 42.55 4.09
179 180 5.565834 CGAGGGAATCTCATAACTTAGAGCC 60.566 48.000 0.00 0.00 42.55 4.70
180 181 4.282195 AGGGAATCTCATAACTTAGAGCCG 59.718 45.833 0.00 0.00 0.00 5.52
181 182 4.281182 GGGAATCTCATAACTTAGAGCCGA 59.719 45.833 0.00 0.00 0.00 5.54
182 183 5.221461 GGGAATCTCATAACTTAGAGCCGAA 60.221 44.000 0.00 0.00 0.00 4.30
183 184 6.281405 GGAATCTCATAACTTAGAGCCGAAA 58.719 40.000 0.00 0.00 0.00 3.46
184 185 6.761714 GGAATCTCATAACTTAGAGCCGAAAA 59.238 38.462 0.00 0.00 0.00 2.29
185 186 7.442666 GGAATCTCATAACTTAGAGCCGAAAAT 59.557 37.037 0.00 0.00 0.00 1.82
186 187 7.721286 ATCTCATAACTTAGAGCCGAAAATG 57.279 36.000 0.00 0.00 0.00 2.32
187 188 6.049149 TCTCATAACTTAGAGCCGAAAATGG 58.951 40.000 0.00 0.00 0.00 3.16
209 210 4.826500 GCAAGAGTGCGAGTACAAATATG 58.173 43.478 0.00 0.00 41.93 1.78
210 211 4.260375 GCAAGAGTGCGAGTACAAATATGG 60.260 45.833 0.00 0.00 41.93 2.74
211 212 4.737855 AGAGTGCGAGTACAAATATGGT 57.262 40.909 0.00 0.00 0.00 3.55
212 213 5.847111 AGAGTGCGAGTACAAATATGGTA 57.153 39.130 0.00 0.00 0.00 3.25
213 214 6.216801 AGAGTGCGAGTACAAATATGGTAA 57.783 37.500 0.00 0.00 0.00 2.85
214 215 6.273825 AGAGTGCGAGTACAAATATGGTAAG 58.726 40.000 0.00 0.00 0.00 2.34
215 216 5.974108 AGTGCGAGTACAAATATGGTAAGT 58.026 37.500 0.00 0.00 0.00 2.24
216 217 6.403878 AGTGCGAGTACAAATATGGTAAGTT 58.596 36.000 0.00 0.00 0.00 2.66
217 218 7.549839 AGTGCGAGTACAAATATGGTAAGTTA 58.450 34.615 0.00 0.00 0.00 2.24
218 219 7.490402 AGTGCGAGTACAAATATGGTAAGTTAC 59.510 37.037 4.32 4.32 0.00 2.50
219 220 7.276218 GTGCGAGTACAAATATGGTAAGTTACA 59.724 37.037 14.81 2.00 0.00 2.41
220 221 7.982919 TGCGAGTACAAATATGGTAAGTTACAT 59.017 33.333 14.81 8.75 0.00 2.29
221 222 9.467258 GCGAGTACAAATATGGTAAGTTACATA 57.533 33.333 14.81 10.40 34.40 2.29
224 225 9.754382 AGTACAAATATGGTAAGTTACATACGG 57.246 33.333 14.81 6.77 32.87 4.02
225 226 8.981647 GTACAAATATGGTAAGTTACATACGGG 58.018 37.037 14.81 1.68 32.87 5.28
226 227 6.993902 ACAAATATGGTAAGTTACATACGGGG 59.006 38.462 14.81 2.38 32.87 5.73
227 228 6.752285 AATATGGTAAGTTACATACGGGGT 57.248 37.500 14.81 0.00 32.87 4.95
228 229 3.891422 TGGTAAGTTACATACGGGGTG 57.109 47.619 14.81 0.00 0.00 4.61
229 230 3.172339 TGGTAAGTTACATACGGGGTGT 58.828 45.455 14.81 0.00 0.00 4.16
230 231 3.582208 TGGTAAGTTACATACGGGGTGTT 59.418 43.478 14.81 0.00 0.00 3.32
231 232 4.774726 TGGTAAGTTACATACGGGGTGTTA 59.225 41.667 14.81 0.00 0.00 2.41
232 233 5.109210 GGTAAGTTACATACGGGGTGTTAC 58.891 45.833 14.81 0.00 31.30 2.50
233 234 4.888326 AAGTTACATACGGGGTGTTACA 57.112 40.909 8.28 0.00 33.02 2.41
234 235 5.425196 AAGTTACATACGGGGTGTTACAT 57.575 39.130 8.28 0.00 33.02 2.29
235 236 6.543430 AAGTTACATACGGGGTGTTACATA 57.457 37.500 8.28 0.00 33.02 2.29
236 237 5.906073 AGTTACATACGGGGTGTTACATAC 58.094 41.667 8.28 0.00 33.02 2.39
237 238 3.825143 ACATACGGGGTGTTACATACC 57.175 47.619 0.00 0.00 37.48 2.73
240 241 3.838795 CGGGGTGTTACATACCGTT 57.161 52.632 18.07 0.00 39.14 4.44
241 242 1.643880 CGGGGTGTTACATACCGTTC 58.356 55.000 18.07 0.12 39.14 3.95
242 243 1.643880 GGGGTGTTACATACCGTTCG 58.356 55.000 0.00 0.00 39.14 3.95
243 244 1.204467 GGGGTGTTACATACCGTTCGA 59.796 52.381 0.00 0.00 39.14 3.71
244 245 2.159057 GGGGTGTTACATACCGTTCGAT 60.159 50.000 0.00 0.00 39.14 3.59
245 246 3.118542 GGGTGTTACATACCGTTCGATC 58.881 50.000 0.00 0.00 39.14 3.69
246 247 3.429272 GGGTGTTACATACCGTTCGATCA 60.429 47.826 0.00 0.00 39.14 2.92
247 248 4.175516 GGTGTTACATACCGTTCGATCAA 58.824 43.478 0.00 0.00 0.00 2.57
248 249 4.266976 GGTGTTACATACCGTTCGATCAAG 59.733 45.833 0.00 0.00 0.00 3.02
249 250 4.266976 GTGTTACATACCGTTCGATCAAGG 59.733 45.833 0.00 0.00 0.00 3.61
250 251 4.158209 TGTTACATACCGTTCGATCAAGGA 59.842 41.667 0.00 0.00 0.00 3.36
251 252 3.438297 ACATACCGTTCGATCAAGGAG 57.562 47.619 0.00 0.00 0.00 3.69
252 253 3.021695 ACATACCGTTCGATCAAGGAGA 58.978 45.455 0.00 0.00 0.00 3.71
253 254 3.066900 ACATACCGTTCGATCAAGGAGAG 59.933 47.826 0.00 0.00 0.00 3.20
254 255 1.546961 ACCGTTCGATCAAGGAGAGT 58.453 50.000 0.00 0.00 0.00 3.24
255 256 1.473278 ACCGTTCGATCAAGGAGAGTC 59.527 52.381 0.00 0.00 0.00 3.36
256 257 1.202313 CCGTTCGATCAAGGAGAGTCC 60.202 57.143 0.00 0.00 36.58 3.85
257 258 1.472878 CGTTCGATCAAGGAGAGTCCA 59.527 52.381 0.00 0.00 39.61 4.02
258 259 2.094700 CGTTCGATCAAGGAGAGTCCAA 60.095 50.000 0.00 0.00 39.61 3.53
259 260 3.254892 GTTCGATCAAGGAGAGTCCAAC 58.745 50.000 0.00 0.00 39.61 3.77
260 261 1.472878 TCGATCAAGGAGAGTCCAACG 59.527 52.381 0.00 0.00 39.61 4.10
261 262 1.469940 CGATCAAGGAGAGTCCAACGG 60.470 57.143 0.00 0.00 39.61 4.44
262 263 1.550976 GATCAAGGAGAGTCCAACGGT 59.449 52.381 0.00 0.00 39.61 4.83
263 264 0.679505 TCAAGGAGAGTCCAACGGTG 59.320 55.000 0.00 0.00 39.61 4.94
264 265 0.951040 CAAGGAGAGTCCAACGGTGC 60.951 60.000 0.00 0.00 39.61 5.01
265 266 1.407656 AAGGAGAGTCCAACGGTGCA 61.408 55.000 0.00 0.00 39.61 4.57
266 267 1.374758 GGAGAGTCCAACGGTGCAG 60.375 63.158 0.00 0.00 36.28 4.41
267 268 1.666011 GAGAGTCCAACGGTGCAGA 59.334 57.895 0.00 0.00 0.00 4.26
268 269 0.667792 GAGAGTCCAACGGTGCAGAC 60.668 60.000 0.00 0.00 0.00 3.51
269 270 2.022129 GAGTCCAACGGTGCAGACG 61.022 63.158 9.00 9.00 34.41 4.18
271 272 1.007038 GTCCAACGGTGCAGACGTA 60.007 57.895 15.68 0.00 44.83 3.57
272 273 0.389426 GTCCAACGGTGCAGACGTAT 60.389 55.000 15.68 5.13 44.83 3.06
273 274 0.389296 TCCAACGGTGCAGACGTATG 60.389 55.000 15.68 5.65 44.83 2.39
274 275 0.389296 CCAACGGTGCAGACGTATGA 60.389 55.000 15.63 0.00 44.83 2.15
275 276 1.640428 CAACGGTGCAGACGTATGAT 58.360 50.000 15.63 0.00 44.83 2.45
276 277 1.588404 CAACGGTGCAGACGTATGATC 59.412 52.381 15.63 5.45 44.83 2.92
277 278 0.102481 ACGGTGCAGACGTATGATCC 59.898 55.000 15.63 13.43 43.60 3.36
278 279 0.934901 CGGTGCAGACGTATGATCCG 60.935 60.000 23.64 23.64 33.94 4.18
279 280 0.102481 GGTGCAGACGTATGATCCGT 59.898 55.000 15.63 0.00 42.06 4.69
280 281 1.200483 GTGCAGACGTATGATCCGTG 58.800 55.000 15.63 0.00 38.92 4.94
281 282 0.102300 TGCAGACGTATGATCCGTGG 59.898 55.000 15.63 0.00 38.92 4.94
282 283 0.597637 GCAGACGTATGATCCGTGGG 60.598 60.000 15.63 0.00 38.92 4.61
283 284 0.032130 CAGACGTATGATCCGTGGGG 59.968 60.000 3.55 0.00 38.92 4.96
284 285 0.396695 AGACGTATGATCCGTGGGGT 60.397 55.000 0.02 0.00 38.92 4.95
285 286 0.462789 GACGTATGATCCGTGGGGTT 59.537 55.000 0.02 0.00 38.92 4.11
286 287 0.906775 ACGTATGATCCGTGGGGTTT 59.093 50.000 0.00 0.00 37.12 3.27
287 288 1.295792 CGTATGATCCGTGGGGTTTG 58.704 55.000 0.00 0.00 33.83 2.93
288 289 1.675552 GTATGATCCGTGGGGTTTGG 58.324 55.000 0.00 0.00 33.83 3.28
289 290 0.548989 TATGATCCGTGGGGTTTGGG 59.451 55.000 0.00 0.00 33.83 4.12
290 291 1.506028 ATGATCCGTGGGGTTTGGGT 61.506 55.000 0.00 0.00 33.83 4.51
291 292 1.076014 GATCCGTGGGGTTTGGGTT 59.924 57.895 0.00 0.00 33.83 4.11
292 293 0.963856 GATCCGTGGGGTTTGGGTTC 60.964 60.000 0.00 0.00 33.83 3.62
293 294 1.432023 ATCCGTGGGGTTTGGGTTCT 61.432 55.000 0.00 0.00 33.83 3.01
294 295 1.901464 CCGTGGGGTTTGGGTTCTG 60.901 63.158 0.00 0.00 0.00 3.02
295 296 1.901464 CGTGGGGTTTGGGTTCTGG 60.901 63.158 0.00 0.00 0.00 3.86
296 297 2.200092 TGGGGTTTGGGTTCTGGC 59.800 61.111 0.00 0.00 0.00 4.85
297 298 2.603473 GGGGTTTGGGTTCTGGCC 60.603 66.667 0.00 0.00 0.00 5.36
298 299 2.200092 GGGTTTGGGTTCTGGCCA 59.800 61.111 4.71 4.71 0.00 5.36
299 300 1.458588 GGGTTTGGGTTCTGGCCAA 60.459 57.895 7.01 0.00 0.00 4.52
300 301 0.835971 GGGTTTGGGTTCTGGCCAAT 60.836 55.000 7.01 0.00 0.00 3.16
301 302 0.608130 GGTTTGGGTTCTGGCCAATC 59.392 55.000 7.01 0.00 0.00 2.67
302 303 1.337118 GTTTGGGTTCTGGCCAATCA 58.663 50.000 7.01 0.00 0.00 2.57
303 304 1.273327 GTTTGGGTTCTGGCCAATCAG 59.727 52.381 7.01 0.00 36.17 2.90
304 305 0.776810 TTGGGTTCTGGCCAATCAGA 59.223 50.000 7.01 0.00 41.51 3.27
309 310 2.219080 TTCTGGCCAATCAGAATGCA 57.781 45.000 7.01 0.00 45.53 3.96
310 311 2.447408 TCTGGCCAATCAGAATGCAT 57.553 45.000 7.01 0.00 40.43 3.96
311 312 2.028876 TCTGGCCAATCAGAATGCATG 58.971 47.619 7.01 0.00 40.43 4.06
312 313 2.028876 CTGGCCAATCAGAATGCATGA 58.971 47.619 7.01 0.00 36.93 3.07
313 314 1.752498 TGGCCAATCAGAATGCATGAC 59.248 47.619 0.61 0.00 34.76 3.06
314 315 2.029623 GGCCAATCAGAATGCATGACT 58.970 47.619 0.00 0.00 34.76 3.41
315 316 2.034305 GGCCAATCAGAATGCATGACTC 59.966 50.000 0.00 0.00 34.76 3.36
316 317 2.686405 GCCAATCAGAATGCATGACTCA 59.314 45.455 0.00 0.00 34.76 3.41
317 318 3.243101 GCCAATCAGAATGCATGACTCAG 60.243 47.826 0.00 0.00 34.76 3.35
318 319 4.196971 CCAATCAGAATGCATGACTCAGA 58.803 43.478 0.00 0.00 34.76 3.27
319 320 4.822350 CCAATCAGAATGCATGACTCAGAT 59.178 41.667 0.00 0.00 34.76 2.90
320 321 5.049336 CCAATCAGAATGCATGACTCAGATC 60.049 44.000 0.00 0.00 34.76 2.75
321 322 4.748277 TCAGAATGCATGACTCAGATCA 57.252 40.909 0.00 0.00 34.76 2.92
322 323 4.439968 TCAGAATGCATGACTCAGATCAC 58.560 43.478 0.00 0.00 34.76 3.06
323 324 3.245519 CAGAATGCATGACTCAGATCACG 59.754 47.826 0.00 0.00 0.00 4.35
324 325 1.579698 ATGCATGACTCAGATCACGC 58.420 50.000 0.00 0.00 38.28 5.34
325 326 0.803380 TGCATGACTCAGATCACGCG 60.803 55.000 3.53 3.53 40.64 6.01
326 327 1.922903 CATGACTCAGATCACGCGC 59.077 57.895 5.73 0.00 0.00 6.86
327 328 1.587350 ATGACTCAGATCACGCGCG 60.587 57.895 30.96 30.96 0.00 6.86
328 329 2.202492 GACTCAGATCACGCGCGT 60.202 61.111 32.73 32.73 0.00 6.01
356 357 2.854522 GCATCAGCCACGGTTTAGT 58.145 52.632 0.00 0.00 33.58 2.24
357 358 0.447801 GCATCAGCCACGGTTTAGTG 59.552 55.000 0.00 0.00 41.53 2.74
372 373 4.134623 GTGGACACACGGCTTTCA 57.865 55.556 0.00 0.00 37.94 2.69
373 374 2.629002 GTGGACACACGGCTTTCAT 58.371 52.632 0.00 0.00 37.94 2.57
374 375 0.238289 GTGGACACACGGCTTTCATG 59.762 55.000 0.00 0.00 37.94 3.07
375 376 0.107643 TGGACACACGGCTTTCATGA 59.892 50.000 0.00 0.00 0.00 3.07
376 377 0.798776 GGACACACGGCTTTCATGAG 59.201 55.000 0.00 0.00 0.00 2.90
377 378 1.512926 GACACACGGCTTTCATGAGT 58.487 50.000 0.00 0.00 0.00 3.41
378 379 1.195448 GACACACGGCTTTCATGAGTG 59.805 52.381 9.75 9.75 38.63 3.51
379 380 1.202639 ACACACGGCTTTCATGAGTGA 60.203 47.619 16.42 0.00 36.71 3.41
380 381 1.872952 CACACGGCTTTCATGAGTGAA 59.127 47.619 16.42 0.00 42.41 3.18
381 382 1.873591 ACACGGCTTTCATGAGTGAAC 59.126 47.619 16.42 0.00 43.72 3.18
382 383 1.197721 CACGGCTTTCATGAGTGAACC 59.802 52.381 6.24 0.30 43.72 3.62
383 384 0.443869 CGGCTTTCATGAGTGAACCG 59.556 55.000 9.36 9.36 43.72 4.44
384 385 1.523758 GGCTTTCATGAGTGAACCGT 58.476 50.000 0.00 0.00 43.72 4.83
385 386 1.197721 GGCTTTCATGAGTGAACCGTG 59.802 52.381 0.00 0.00 43.72 4.94
386 387 1.873591 GCTTTCATGAGTGAACCGTGT 59.126 47.619 0.00 0.00 43.72 4.49
387 388 2.349817 GCTTTCATGAGTGAACCGTGTG 60.350 50.000 0.00 0.00 43.72 3.82
388 389 2.613026 TTCATGAGTGAACCGTGTGT 57.387 45.000 0.00 0.00 39.36 3.72
389 390 2.613026 TCATGAGTGAACCGTGTGTT 57.387 45.000 0.00 0.00 40.81 3.32
390 391 3.737032 TCATGAGTGAACCGTGTGTTA 57.263 42.857 0.00 0.00 37.29 2.41
391 392 4.265904 TCATGAGTGAACCGTGTGTTAT 57.734 40.909 0.00 0.00 37.29 1.89
392 393 4.637276 TCATGAGTGAACCGTGTGTTATT 58.363 39.130 0.00 0.00 37.29 1.40
393 394 5.060506 TCATGAGTGAACCGTGTGTTATTT 58.939 37.500 0.00 0.00 37.29 1.40
394 395 4.804608 TGAGTGAACCGTGTGTTATTTG 57.195 40.909 0.00 0.00 37.29 2.32
395 396 4.443621 TGAGTGAACCGTGTGTTATTTGA 58.556 39.130 0.00 0.00 37.29 2.69
396 397 4.876679 TGAGTGAACCGTGTGTTATTTGAA 59.123 37.500 0.00 0.00 37.29 2.69
397 398 5.354513 TGAGTGAACCGTGTGTTATTTGAAA 59.645 36.000 0.00 0.00 37.29 2.69
398 399 6.127980 TGAGTGAACCGTGTGTTATTTGAAAA 60.128 34.615 0.00 0.00 37.29 2.29
399 400 6.031471 AGTGAACCGTGTGTTATTTGAAAAC 58.969 36.000 0.00 0.00 37.29 2.43
400 401 5.800941 GTGAACCGTGTGTTATTTGAAAACA 59.199 36.000 0.00 0.00 37.29 2.83
401 402 6.474102 GTGAACCGTGTGTTATTTGAAAACAT 59.526 34.615 0.00 0.00 38.95 2.71
402 403 7.009723 GTGAACCGTGTGTTATTTGAAAACATT 59.990 33.333 0.00 0.00 38.95 2.71
403 404 7.545965 TGAACCGTGTGTTATTTGAAAACATTT 59.454 29.630 0.00 0.00 38.95 2.32
404 405 8.928270 AACCGTGTGTTATTTGAAAACATTTA 57.072 26.923 0.00 0.00 38.95 1.40
405 406 8.342725 ACCGTGTGTTATTTGAAAACATTTAC 57.657 30.769 0.00 0.00 38.95 2.01
406 407 7.974501 ACCGTGTGTTATTTGAAAACATTTACA 59.025 29.630 0.00 0.00 38.95 2.41
407 408 8.973378 CCGTGTGTTATTTGAAAACATTTACAT 58.027 29.630 0.00 0.00 38.95 2.29
449 450 8.768957 TTTGTTTGAATGAAAACATGAGTTCA 57.231 26.923 15.02 15.02 46.44 3.18
450 451 8.945481 TTGTTTGAATGAAAACATGAGTTCAT 57.055 26.923 17.39 17.39 46.44 2.57
451 452 8.578308 TGTTTGAATGAAAACATGAGTTCATC 57.422 30.769 21.00 16.34 43.34 2.92
452 453 7.379262 TGTTTGAATGAAAACATGAGTTCATCG 59.621 33.333 21.00 0.00 43.34 3.84
453 454 6.558771 TGAATGAAAACATGAGTTCATCGT 57.441 33.333 21.00 11.82 42.30 3.73
454 455 6.969366 TGAATGAAAACATGAGTTCATCGTT 58.031 32.000 21.00 11.84 42.30 3.85
455 456 7.424803 TGAATGAAAACATGAGTTCATCGTTT 58.575 30.769 21.00 11.58 42.30 3.60
456 457 7.591057 TGAATGAAAACATGAGTTCATCGTTTC 59.409 33.333 21.00 17.16 42.30 2.78
457 458 5.439828 TGAAAACATGAGTTCATCGTTTCG 58.560 37.500 0.00 0.00 38.13 3.46
458 459 3.455619 AACATGAGTTCATCGTTTCGC 57.544 42.857 0.00 0.00 33.61 4.70
459 460 1.732259 ACATGAGTTCATCGTTTCGCC 59.268 47.619 0.00 0.00 33.61 5.54
460 461 2.002586 CATGAGTTCATCGTTTCGCCT 58.997 47.619 0.00 0.00 33.61 5.52
461 462 1.710013 TGAGTTCATCGTTTCGCCTC 58.290 50.000 0.00 0.00 0.00 4.70
462 463 1.000145 GAGTTCATCGTTTCGCCTCC 59.000 55.000 0.00 0.00 0.00 4.30
463 464 0.320374 AGTTCATCGTTTCGCCTCCA 59.680 50.000 0.00 0.00 0.00 3.86
464 465 1.153353 GTTCATCGTTTCGCCTCCAA 58.847 50.000 0.00 0.00 0.00 3.53
465 466 1.737793 GTTCATCGTTTCGCCTCCAAT 59.262 47.619 0.00 0.00 0.00 3.16
466 467 2.107950 TCATCGTTTCGCCTCCAATT 57.892 45.000 0.00 0.00 0.00 2.32
467 468 2.432444 TCATCGTTTCGCCTCCAATTT 58.568 42.857 0.00 0.00 0.00 1.82
468 469 2.817258 TCATCGTTTCGCCTCCAATTTT 59.183 40.909 0.00 0.00 0.00 1.82
469 470 3.254657 TCATCGTTTCGCCTCCAATTTTT 59.745 39.130 0.00 0.00 0.00 1.94
492 493 9.656040 TTTTTCCATGGTAAGAAATCATGATTG 57.344 29.630 21.39 6.49 40.28 2.67
493 494 7.959658 TTCCATGGTAAGAAATCATGATTGT 57.040 32.000 21.39 12.20 40.28 2.71
494 495 9.473007 TTTCCATGGTAAGAAATCATGATTGTA 57.527 29.630 21.39 11.28 40.28 2.41
495 496 8.450578 TCCATGGTAAGAAATCATGATTGTAC 57.549 34.615 21.39 20.20 40.28 2.90
496 497 7.502226 TCCATGGTAAGAAATCATGATTGTACC 59.498 37.037 28.95 28.95 40.28 3.34
497 498 7.255590 CCATGGTAAGAAATCATGATTGTACCC 60.256 40.741 30.51 22.92 40.28 3.69
498 499 6.969043 TGGTAAGAAATCATGATTGTACCCT 58.031 36.000 30.51 18.85 35.16 4.34
499 500 8.096621 TGGTAAGAAATCATGATTGTACCCTA 57.903 34.615 30.51 20.73 35.16 3.53
500 501 8.723365 TGGTAAGAAATCATGATTGTACCCTAT 58.277 33.333 30.51 15.16 35.16 2.57
501 502 9.003658 GGTAAGAAATCATGATTGTACCCTATG 57.996 37.037 27.27 0.00 32.70 2.23
502 503 9.003658 GTAAGAAATCATGATTGTACCCTATGG 57.996 37.037 21.39 0.00 37.80 2.74
504 505 7.586349 AGAAATCATGATTGTACCCTATGGTT 58.414 34.615 21.39 0.97 44.75 3.67
505 506 7.721399 AGAAATCATGATTGTACCCTATGGTTC 59.279 37.037 21.39 10.15 44.75 3.62
506 507 5.966853 TCATGATTGTACCCTATGGTTCA 57.033 39.130 0.00 0.00 44.75 3.18
533 534 1.813786 TGGTACATTTTACCAAGCGGC 59.186 47.619 0.00 0.00 43.93 6.53
534 535 1.813786 GGTACATTTTACCAAGCGGCA 59.186 47.619 1.45 0.00 37.53 5.69
535 536 2.159435 GGTACATTTTACCAAGCGGCAG 60.159 50.000 1.45 0.00 37.53 4.85
536 537 0.887933 ACATTTTACCAAGCGGCAGG 59.112 50.000 1.45 6.33 34.57 4.85
537 538 0.458370 CATTTTACCAAGCGGCAGGC 60.458 55.000 10.87 0.00 44.05 4.85
538 539 1.604147 ATTTTACCAAGCGGCAGGCC 61.604 55.000 10.87 0.00 45.17 5.19
539 540 2.706952 TTTTACCAAGCGGCAGGCCT 62.707 55.000 0.00 0.00 45.17 5.19
540 541 3.918253 TTACCAAGCGGCAGGCCTG 62.918 63.158 29.34 29.34 45.17 4.85
549 550 2.123982 GCAGGCCTGGCTAGCAAT 60.124 61.111 33.46 0.00 0.00 3.56
550 551 2.192187 GCAGGCCTGGCTAGCAATC 61.192 63.158 33.46 10.16 0.00 2.67
551 552 1.530771 CAGGCCTGGCTAGCAATCT 59.469 57.895 26.14 1.73 0.00 2.40
552 553 0.534652 CAGGCCTGGCTAGCAATCTC 60.535 60.000 26.14 2.79 0.00 2.75
553 554 0.984961 AGGCCTGGCTAGCAATCTCA 60.985 55.000 19.68 3.62 0.00 3.27
554 555 0.107017 GGCCTGGCTAGCAATCTCAA 60.107 55.000 19.68 0.00 0.00 3.02
555 556 1.683011 GGCCTGGCTAGCAATCTCAAA 60.683 52.381 19.68 0.00 0.00 2.69
556 557 1.403323 GCCTGGCTAGCAATCTCAAAC 59.597 52.381 18.24 0.00 0.00 2.93
557 558 2.943199 GCCTGGCTAGCAATCTCAAACT 60.943 50.000 18.24 0.00 0.00 2.66
558 559 3.350833 CCTGGCTAGCAATCTCAAACTT 58.649 45.455 18.24 0.00 0.00 2.66
559 560 3.760684 CCTGGCTAGCAATCTCAAACTTT 59.239 43.478 18.24 0.00 0.00 2.66
560 561 4.380233 CCTGGCTAGCAATCTCAAACTTTG 60.380 45.833 18.24 0.00 0.00 2.77
561 562 4.397420 TGGCTAGCAATCTCAAACTTTGA 58.603 39.130 18.24 4.16 38.17 2.69
562 563 4.826733 TGGCTAGCAATCTCAAACTTTGAA 59.173 37.500 18.24 0.00 39.58 2.69
563 564 5.477984 TGGCTAGCAATCTCAAACTTTGAAT 59.522 36.000 18.24 0.88 39.58 2.57
564 565 6.658816 TGGCTAGCAATCTCAAACTTTGAATA 59.341 34.615 18.24 0.00 39.58 1.75
565 566 7.340232 TGGCTAGCAATCTCAAACTTTGAATAT 59.660 33.333 18.24 0.53 39.58 1.28
566 567 7.646922 GGCTAGCAATCTCAAACTTTGAATATG 59.353 37.037 18.24 5.90 39.58 1.78
567 568 7.167136 GCTAGCAATCTCAAACTTTGAATATGC 59.833 37.037 10.63 18.46 39.58 3.14
568 569 6.927416 AGCAATCTCAAACTTTGAATATGCA 58.073 32.000 23.42 0.00 39.58 3.96
569 570 7.380536 AGCAATCTCAAACTTTGAATATGCAA 58.619 30.769 23.42 0.00 39.58 4.08
570 571 7.874016 AGCAATCTCAAACTTTGAATATGCAAA 59.126 29.630 23.42 8.62 39.58 3.68
571 572 8.497554 GCAATCTCAAACTTTGAATATGCAAAA 58.502 29.630 19.91 0.00 39.58 2.44
670 671 5.222130 ACCCTACTTGAACTGATGGTTTCAT 60.222 40.000 0.00 0.00 38.41 2.57
835 858 3.923864 AAGTCCACACGCAGGCGA 61.924 61.111 21.62 0.00 42.83 5.54
866 889 2.603776 AGAGAACGCGGGGGAAGT 60.604 61.111 12.47 0.00 0.00 3.01
893 919 2.125552 CGCGTCCATGGCAGAAGA 60.126 61.111 6.96 0.00 0.00 2.87
1557 1599 5.414765 TGAGTTACTACTGCTCGATCTTCAA 59.585 40.000 0.00 0.00 33.84 2.69
1672 1715 3.853671 GTGCCATCTCGTGCTTATTTTTG 59.146 43.478 0.00 0.00 0.00 2.44
1673 1716 2.854185 GCCATCTCGTGCTTATTTTTGC 59.146 45.455 0.00 0.00 0.00 3.68
1676 1720 2.790433 TCTCGTGCTTATTTTTGCCCT 58.210 42.857 0.00 0.00 0.00 5.19
1810 1856 2.003301 GAAGGTTTCTTCTAGCAGGCG 58.997 52.381 0.00 0.00 44.43 5.52
1881 1927 0.459489 GGGTGCTTGTTTGTTGCAGA 59.541 50.000 0.00 0.00 37.39 4.26
1883 1929 2.295909 GGGTGCTTGTTTGTTGCAGATA 59.704 45.455 0.00 0.00 37.39 1.98
2248 2300 4.760047 GCGTCCCGAGCATGGTGT 62.760 66.667 0.00 0.00 34.19 4.16
2330 2399 0.240145 CTTGGACTAGCACACGACGA 59.760 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.130186 GACACTCCTACGTCTTCCGAC 59.870 57.143 0.00 0.00 40.70 4.79
3 4 0.096628 CGACACTCCTACGTCTTCCG 59.903 60.000 0.00 0.00 44.03 4.30
4 5 0.450983 CCGACACTCCTACGTCTTCC 59.549 60.000 0.00 0.00 0.00 3.46
5 6 1.446907 TCCGACACTCCTACGTCTTC 58.553 55.000 0.00 0.00 0.00 2.87
6 7 1.901591 TTCCGACACTCCTACGTCTT 58.098 50.000 0.00 0.00 0.00 3.01
7 8 1.743958 CATTCCGACACTCCTACGTCT 59.256 52.381 0.00 0.00 0.00 4.18
8 9 1.798079 GCATTCCGACACTCCTACGTC 60.798 57.143 0.00 0.00 0.00 4.34
9 10 0.172803 GCATTCCGACACTCCTACGT 59.827 55.000 0.00 0.00 0.00 3.57
10 11 0.172578 TGCATTCCGACACTCCTACG 59.827 55.000 0.00 0.00 0.00 3.51
11 12 2.380084 TTGCATTCCGACACTCCTAC 57.620 50.000 0.00 0.00 0.00 3.18
12 13 3.071479 GTTTTGCATTCCGACACTCCTA 58.929 45.455 0.00 0.00 0.00 2.94
13 14 1.880027 GTTTTGCATTCCGACACTCCT 59.120 47.619 0.00 0.00 0.00 3.69
14 15 1.399727 CGTTTTGCATTCCGACACTCC 60.400 52.381 0.00 0.00 0.00 3.85
15 16 1.399727 CCGTTTTGCATTCCGACACTC 60.400 52.381 0.00 0.00 0.00 3.51
16 17 0.591170 CCGTTTTGCATTCCGACACT 59.409 50.000 0.00 0.00 0.00 3.55
17 18 0.589223 TCCGTTTTGCATTCCGACAC 59.411 50.000 0.00 0.00 0.00 3.67
18 19 0.589223 GTCCGTTTTGCATTCCGACA 59.411 50.000 0.00 0.00 0.00 4.35
19 20 0.589223 TGTCCGTTTTGCATTCCGAC 59.411 50.000 0.00 0.00 0.00 4.79
20 21 1.002251 GTTGTCCGTTTTGCATTCCGA 60.002 47.619 0.00 0.00 0.00 4.55
21 22 1.404477 GTTGTCCGTTTTGCATTCCG 58.596 50.000 0.00 0.00 0.00 4.30
22 23 1.404477 CGTTGTCCGTTTTGCATTCC 58.596 50.000 0.00 0.00 0.00 3.01
23 24 1.404477 CCGTTGTCCGTTTTGCATTC 58.596 50.000 0.00 0.00 33.66 2.67
24 25 0.031449 CCCGTTGTCCGTTTTGCATT 59.969 50.000 0.00 0.00 33.66 3.56
25 26 1.657556 CCCGTTGTCCGTTTTGCAT 59.342 52.632 0.00 0.00 33.66 3.96
26 27 2.482333 CCCCGTTGTCCGTTTTGCA 61.482 57.895 0.00 0.00 33.66 4.08
27 28 1.726533 TTCCCCGTTGTCCGTTTTGC 61.727 55.000 0.00 0.00 33.66 3.68
28 29 0.739561 TTTCCCCGTTGTCCGTTTTG 59.260 50.000 0.00 0.00 33.66 2.44
29 30 1.472188 TTTTCCCCGTTGTCCGTTTT 58.528 45.000 0.00 0.00 33.66 2.43
30 31 1.338655 CATTTTCCCCGTTGTCCGTTT 59.661 47.619 0.00 0.00 33.66 3.60
31 32 0.955905 CATTTTCCCCGTTGTCCGTT 59.044 50.000 0.00 0.00 33.66 4.44
32 33 1.520600 GCATTTTCCCCGTTGTCCGT 61.521 55.000 0.00 0.00 33.66 4.69
33 34 1.211709 GCATTTTCCCCGTTGTCCG 59.788 57.895 0.00 0.00 0.00 4.79
34 35 0.526211 GAGCATTTTCCCCGTTGTCC 59.474 55.000 0.00 0.00 0.00 4.02
35 36 0.168128 CGAGCATTTTCCCCGTTGTC 59.832 55.000 0.00 0.00 0.00 3.18
36 37 1.241315 CCGAGCATTTTCCCCGTTGT 61.241 55.000 0.00 0.00 0.00 3.32
37 38 0.958382 TCCGAGCATTTTCCCCGTTG 60.958 55.000 0.00 0.00 0.00 4.10
38 39 0.034477 ATCCGAGCATTTTCCCCGTT 60.034 50.000 0.00 0.00 0.00 4.44
39 40 0.748005 CATCCGAGCATTTTCCCCGT 60.748 55.000 0.00 0.00 0.00 5.28
40 41 2.024918 CATCCGAGCATTTTCCCCG 58.975 57.895 0.00 0.00 0.00 5.73
41 42 1.037030 TGCATCCGAGCATTTTCCCC 61.037 55.000 0.00 0.00 40.11 4.81
42 43 2.492418 TGCATCCGAGCATTTTCCC 58.508 52.632 0.00 0.00 40.11 3.97
50 51 1.530293 GTTCATCTCATGCATCCGAGC 59.470 52.381 8.78 0.00 0.00 5.03
51 52 2.543012 GTGTTCATCTCATGCATCCGAG 59.457 50.000 7.55 7.55 0.00 4.63
52 53 2.554142 GTGTTCATCTCATGCATCCGA 58.446 47.619 0.00 0.00 0.00 4.55
53 54 1.259770 CGTGTTCATCTCATGCATCCG 59.740 52.381 0.00 0.00 0.00 4.18
54 55 2.283298 ACGTGTTCATCTCATGCATCC 58.717 47.619 0.00 0.00 0.00 3.51
55 56 4.610007 GCATACGTGTTCATCTCATGCATC 60.610 45.833 0.00 0.00 37.74 3.91
56 57 3.249320 GCATACGTGTTCATCTCATGCAT 59.751 43.478 8.79 0.00 37.74 3.96
57 58 2.609002 GCATACGTGTTCATCTCATGCA 59.391 45.455 8.79 0.00 37.74 3.96
58 59 2.609002 TGCATACGTGTTCATCTCATGC 59.391 45.455 0.00 2.40 38.19 4.06
59 60 4.863152 TTGCATACGTGTTCATCTCATG 57.137 40.909 0.00 0.00 0.00 3.07
60 61 5.585844 TCATTTGCATACGTGTTCATCTCAT 59.414 36.000 0.00 0.00 0.00 2.90
61 62 4.934602 TCATTTGCATACGTGTTCATCTCA 59.065 37.500 0.00 0.00 0.00 3.27
62 63 5.291858 TCTCATTTGCATACGTGTTCATCTC 59.708 40.000 0.00 0.00 0.00 2.75
63 64 5.178061 TCTCATTTGCATACGTGTTCATCT 58.822 37.500 0.00 0.00 0.00 2.90
64 65 5.469373 TCTCATTTGCATACGTGTTCATC 57.531 39.130 0.00 0.00 0.00 2.92
65 66 5.731406 GCATCTCATTTGCATACGTGTTCAT 60.731 40.000 0.00 0.00 39.90 2.57
66 67 4.437255 GCATCTCATTTGCATACGTGTTCA 60.437 41.667 0.00 0.00 39.90 3.18
67 68 4.031028 GCATCTCATTTGCATACGTGTTC 58.969 43.478 0.00 0.00 39.90 3.18
68 69 3.439825 TGCATCTCATTTGCATACGTGTT 59.560 39.130 0.00 0.00 44.73 3.32
69 70 3.009026 TGCATCTCATTTGCATACGTGT 58.991 40.909 0.00 0.00 44.73 4.49
70 71 3.678915 TGCATCTCATTTGCATACGTG 57.321 42.857 0.00 0.00 44.73 4.49
76 77 8.076351 ATGTCATCATGTGCATCTCATTTGCA 62.076 38.462 0.00 0.00 39.06 4.08
77 78 4.042398 GTCATCATGTGCATCTCATTTGC 58.958 43.478 0.00 0.00 40.55 3.68
78 79 5.243426 TGTCATCATGTGCATCTCATTTG 57.757 39.130 0.00 0.00 0.00 2.32
79 80 5.831997 CATGTCATCATGTGCATCTCATTT 58.168 37.500 0.00 0.00 44.37 2.32
80 81 5.438761 CATGTCATCATGTGCATCTCATT 57.561 39.130 0.00 0.00 44.37 2.57
89 90 8.028938 ATGCATTTCATATCATGTCATCATGTG 58.971 33.333 0.00 0.00 41.56 3.21
90 91 8.028938 CATGCATTTCATATCATGTCATCATGT 58.971 33.333 0.00 0.27 41.53 3.21
91 92 8.243426 TCATGCATTTCATATCATGTCATCATG 58.757 33.333 0.00 2.27 41.82 3.07
92 93 8.244113 GTCATGCATTTCATATCATGTCATCAT 58.756 33.333 0.00 0.00 37.95 2.45
93 94 7.572353 CGTCATGCATTTCATATCATGTCATCA 60.572 37.037 0.00 0.00 37.95 3.07
94 95 6.741358 CGTCATGCATTTCATATCATGTCATC 59.259 38.462 0.00 0.00 37.95 2.92
95 96 6.206048 ACGTCATGCATTTCATATCATGTCAT 59.794 34.615 0.00 0.00 37.95 3.06
96 97 5.528320 ACGTCATGCATTTCATATCATGTCA 59.472 36.000 0.00 0.00 37.95 3.58
97 98 5.849604 CACGTCATGCATTTCATATCATGTC 59.150 40.000 0.00 0.00 37.95 3.06
98 99 5.528320 TCACGTCATGCATTTCATATCATGT 59.472 36.000 0.00 0.00 37.95 3.21
99 100 5.992729 TCACGTCATGCATTTCATATCATG 58.007 37.500 0.00 0.00 38.05 3.07
100 101 6.038492 TGTTCACGTCATGCATTTCATATCAT 59.962 34.615 0.00 0.00 33.19 2.45
101 102 5.353678 TGTTCACGTCATGCATTTCATATCA 59.646 36.000 0.00 0.00 33.19 2.15
102 103 5.809464 TGTTCACGTCATGCATTTCATATC 58.191 37.500 0.00 0.00 33.19 1.63
103 104 5.816449 TGTTCACGTCATGCATTTCATAT 57.184 34.783 0.00 0.00 33.19 1.78
104 105 5.619625 TTGTTCACGTCATGCATTTCATA 57.380 34.783 0.00 0.00 33.19 2.15
105 106 4.502171 TTGTTCACGTCATGCATTTCAT 57.498 36.364 0.00 0.00 35.31 2.57
106 107 3.978718 TTGTTCACGTCATGCATTTCA 57.021 38.095 0.00 0.00 0.00 2.69
107 108 5.601582 CATTTTGTTCACGTCATGCATTTC 58.398 37.500 0.00 0.00 0.00 2.17
108 109 4.084433 GCATTTTGTTCACGTCATGCATTT 60.084 37.500 0.00 0.00 34.31 2.32
109 110 3.429543 GCATTTTGTTCACGTCATGCATT 59.570 39.130 0.00 0.00 34.31 3.56
110 111 2.988493 GCATTTTGTTCACGTCATGCAT 59.012 40.909 0.00 0.00 34.31 3.96
111 112 2.223665 TGCATTTTGTTCACGTCATGCA 60.224 40.909 0.55 0.55 40.84 3.96
112 113 2.392821 TGCATTTTGTTCACGTCATGC 58.607 42.857 0.00 0.00 0.00 4.06
113 114 5.189625 GTTTTGCATTTTGTTCACGTCATG 58.810 37.500 0.00 0.00 0.00 3.07
114 115 4.867047 TGTTTTGCATTTTGTTCACGTCAT 59.133 33.333 0.00 0.00 0.00 3.06
115 116 4.237724 TGTTTTGCATTTTGTTCACGTCA 58.762 34.783 0.00 0.00 0.00 4.35
116 117 4.831741 TGTTTTGCATTTTGTTCACGTC 57.168 36.364 0.00 0.00 0.00 4.34
117 118 5.406780 TCTTTGTTTTGCATTTTGTTCACGT 59.593 32.000 0.00 0.00 0.00 4.49
118 119 5.727592 GTCTTTGTTTTGCATTTTGTTCACG 59.272 36.000 0.00 0.00 0.00 4.35
119 120 6.597614 TGTCTTTGTTTTGCATTTTGTTCAC 58.402 32.000 0.00 0.00 0.00 3.18
120 121 6.791887 TGTCTTTGTTTTGCATTTTGTTCA 57.208 29.167 0.00 0.00 0.00 3.18
121 122 8.416424 GTTTTGTCTTTGTTTTGCATTTTGTTC 58.584 29.630 0.00 0.00 0.00 3.18
122 123 7.380870 GGTTTTGTCTTTGTTTTGCATTTTGTT 59.619 29.630 0.00 0.00 0.00 2.83
123 124 6.860539 GGTTTTGTCTTTGTTTTGCATTTTGT 59.139 30.769 0.00 0.00 0.00 2.83
124 125 6.307558 GGGTTTTGTCTTTGTTTTGCATTTTG 59.692 34.615 0.00 0.00 0.00 2.44
125 126 6.015940 TGGGTTTTGTCTTTGTTTTGCATTTT 60.016 30.769 0.00 0.00 0.00 1.82
126 127 5.474876 TGGGTTTTGTCTTTGTTTTGCATTT 59.525 32.000 0.00 0.00 0.00 2.32
127 128 5.006386 TGGGTTTTGTCTTTGTTTTGCATT 58.994 33.333 0.00 0.00 0.00 3.56
128 129 4.583871 TGGGTTTTGTCTTTGTTTTGCAT 58.416 34.783 0.00 0.00 0.00 3.96
129 130 4.008074 TGGGTTTTGTCTTTGTTTTGCA 57.992 36.364 0.00 0.00 0.00 4.08
130 131 4.378978 GGTTGGGTTTTGTCTTTGTTTTGC 60.379 41.667 0.00 0.00 0.00 3.68
131 132 4.757149 TGGTTGGGTTTTGTCTTTGTTTTG 59.243 37.500 0.00 0.00 0.00 2.44
132 133 4.757657 GTGGTTGGGTTTTGTCTTTGTTTT 59.242 37.500 0.00 0.00 0.00 2.43
133 134 4.320023 GTGGTTGGGTTTTGTCTTTGTTT 58.680 39.130 0.00 0.00 0.00 2.83
134 135 3.615351 CGTGGTTGGGTTTTGTCTTTGTT 60.615 43.478 0.00 0.00 0.00 2.83
135 136 2.094442 CGTGGTTGGGTTTTGTCTTTGT 60.094 45.455 0.00 0.00 0.00 2.83
136 137 2.164624 TCGTGGTTGGGTTTTGTCTTTG 59.835 45.455 0.00 0.00 0.00 2.77
137 138 2.425668 CTCGTGGTTGGGTTTTGTCTTT 59.574 45.455 0.00 0.00 0.00 2.52
138 139 2.021457 CTCGTGGTTGGGTTTTGTCTT 58.979 47.619 0.00 0.00 0.00 3.01
139 140 1.675552 CTCGTGGTTGGGTTTTGTCT 58.324 50.000 0.00 0.00 0.00 3.41
140 141 0.666374 CCTCGTGGTTGGGTTTTGTC 59.334 55.000 0.00 0.00 0.00 3.18
141 142 0.753848 CCCTCGTGGTTGGGTTTTGT 60.754 55.000 2.33 0.00 38.65 2.83
142 143 0.466555 TCCCTCGTGGTTGGGTTTTG 60.467 55.000 2.33 0.00 43.74 2.44
143 144 0.259356 TTCCCTCGTGGTTGGGTTTT 59.741 50.000 2.33 0.00 43.74 2.43
144 145 0.481128 ATTCCCTCGTGGTTGGGTTT 59.519 50.000 2.33 0.00 43.74 3.27
145 146 0.037734 GATTCCCTCGTGGTTGGGTT 59.962 55.000 2.33 0.00 43.74 4.11
146 147 0.840722 AGATTCCCTCGTGGTTGGGT 60.841 55.000 2.33 0.00 43.74 4.51
147 148 0.107654 GAGATTCCCTCGTGGTTGGG 60.108 60.000 2.33 0.00 44.66 4.12
148 149 0.613260 TGAGATTCCCTCGTGGTTGG 59.387 55.000 2.33 0.00 44.92 3.77
149 150 2.698855 ATGAGATTCCCTCGTGGTTG 57.301 50.000 2.33 0.00 44.92 3.77
150 151 3.775316 AGTTATGAGATTCCCTCGTGGTT 59.225 43.478 2.33 0.00 44.92 3.67
151 152 3.375699 AGTTATGAGATTCCCTCGTGGT 58.624 45.455 2.33 0.00 44.92 4.16
152 153 4.408182 AAGTTATGAGATTCCCTCGTGG 57.592 45.455 0.00 0.00 44.92 4.94
153 154 6.392625 TCTAAGTTATGAGATTCCCTCGTG 57.607 41.667 0.00 0.00 44.92 4.35
154 155 5.010213 GCTCTAAGTTATGAGATTCCCTCGT 59.990 44.000 11.35 0.00 44.92 4.18
155 156 5.465935 GCTCTAAGTTATGAGATTCCCTCG 58.534 45.833 11.35 0.00 44.92 4.63
156 157 5.565834 CGGCTCTAAGTTATGAGATTCCCTC 60.566 48.000 11.35 0.00 42.30 4.30
157 158 4.282195 CGGCTCTAAGTTATGAGATTCCCT 59.718 45.833 11.35 0.00 32.44 4.20
158 159 4.281182 TCGGCTCTAAGTTATGAGATTCCC 59.719 45.833 11.35 4.70 32.44 3.97
159 160 5.455056 TCGGCTCTAAGTTATGAGATTCC 57.545 43.478 11.35 4.94 32.44 3.01
160 161 7.772332 TTTTCGGCTCTAAGTTATGAGATTC 57.228 36.000 11.35 2.90 32.44 2.52
161 162 7.227512 CCATTTTCGGCTCTAAGTTATGAGATT 59.772 37.037 11.35 0.00 32.44 2.40
162 163 6.708054 CCATTTTCGGCTCTAAGTTATGAGAT 59.292 38.462 11.35 0.00 32.44 2.75
163 164 6.049149 CCATTTTCGGCTCTAAGTTATGAGA 58.951 40.000 11.35 0.00 32.44 3.27
164 165 6.292389 CCATTTTCGGCTCTAAGTTATGAG 57.708 41.667 5.48 5.48 0.00 2.90
178 179 3.406682 GCACTCTTGCCATTTTCGG 57.593 52.632 0.00 0.00 43.66 4.30
187 188 4.260375 CCATATTTGTACTCGCACTCTTGC 60.260 45.833 0.00 0.00 46.21 4.01
188 189 4.870426 ACCATATTTGTACTCGCACTCTTG 59.130 41.667 0.00 0.00 0.00 3.02
189 190 5.086104 ACCATATTTGTACTCGCACTCTT 57.914 39.130 0.00 0.00 0.00 2.85
190 191 4.737855 ACCATATTTGTACTCGCACTCT 57.262 40.909 0.00 0.00 0.00 3.24
191 192 6.040878 ACTTACCATATTTGTACTCGCACTC 58.959 40.000 0.00 0.00 0.00 3.51
192 193 5.974108 ACTTACCATATTTGTACTCGCACT 58.026 37.500 0.00 0.00 0.00 4.40
193 194 6.657836 AACTTACCATATTTGTACTCGCAC 57.342 37.500 0.00 0.00 0.00 5.34
194 195 7.321908 TGTAACTTACCATATTTGTACTCGCA 58.678 34.615 0.00 0.00 0.00 5.10
195 196 7.760131 TGTAACTTACCATATTTGTACTCGC 57.240 36.000 0.00 0.00 0.00 5.03
198 199 9.754382 CCGTATGTAACTTACCATATTTGTACT 57.246 33.333 0.00 0.00 0.00 2.73
199 200 8.981647 CCCGTATGTAACTTACCATATTTGTAC 58.018 37.037 0.00 0.00 0.00 2.90
200 201 8.149647 CCCCGTATGTAACTTACCATATTTGTA 58.850 37.037 0.00 0.00 0.00 2.41
201 202 6.993902 CCCCGTATGTAACTTACCATATTTGT 59.006 38.462 0.00 0.00 0.00 2.83
202 203 6.993902 ACCCCGTATGTAACTTACCATATTTG 59.006 38.462 0.00 0.00 0.00 2.32
203 204 6.993902 CACCCCGTATGTAACTTACCATATTT 59.006 38.462 0.00 0.00 0.00 1.40
204 205 6.100134 ACACCCCGTATGTAACTTACCATATT 59.900 38.462 0.00 0.00 0.00 1.28
205 206 5.603813 ACACCCCGTATGTAACTTACCATAT 59.396 40.000 0.00 0.00 0.00 1.78
206 207 4.961730 ACACCCCGTATGTAACTTACCATA 59.038 41.667 0.00 0.00 0.00 2.74
207 208 3.776417 ACACCCCGTATGTAACTTACCAT 59.224 43.478 0.00 0.00 0.00 3.55
208 209 3.172339 ACACCCCGTATGTAACTTACCA 58.828 45.455 0.00 0.00 0.00 3.25
209 210 3.893326 ACACCCCGTATGTAACTTACC 57.107 47.619 0.00 0.00 0.00 2.85
210 211 5.719173 TGTAACACCCCGTATGTAACTTAC 58.281 41.667 0.00 0.00 0.00 2.34
211 212 5.991933 TGTAACACCCCGTATGTAACTTA 57.008 39.130 0.00 0.00 0.00 2.24
212 213 4.888326 TGTAACACCCCGTATGTAACTT 57.112 40.909 0.00 0.00 0.00 2.66
213 214 5.163416 GGTATGTAACACCCCGTATGTAACT 60.163 44.000 0.00 0.00 0.00 2.24
214 215 5.049828 GGTATGTAACACCCCGTATGTAAC 58.950 45.833 0.00 0.00 0.00 2.50
215 216 4.202101 CGGTATGTAACACCCCGTATGTAA 60.202 45.833 0.00 0.00 34.10 2.41
216 217 3.317711 CGGTATGTAACACCCCGTATGTA 59.682 47.826 0.00 0.00 34.10 2.29
217 218 2.101249 CGGTATGTAACACCCCGTATGT 59.899 50.000 0.00 0.00 34.10 2.29
218 219 2.746269 CGGTATGTAACACCCCGTATG 58.254 52.381 0.00 0.00 34.10 2.39
221 222 2.669878 ACGGTATGTAACACCCCGT 58.330 52.632 7.56 7.56 46.31 5.28
222 223 1.643880 GAACGGTATGTAACACCCCG 58.356 55.000 6.38 6.38 44.06 5.73
223 224 1.204467 TCGAACGGTATGTAACACCCC 59.796 52.381 0.00 0.00 31.96 4.95
224 225 2.652941 TCGAACGGTATGTAACACCC 57.347 50.000 0.00 0.00 31.96 4.61
225 226 3.772932 TGATCGAACGGTATGTAACACC 58.227 45.455 0.00 0.00 0.00 4.16
226 227 4.266976 CCTTGATCGAACGGTATGTAACAC 59.733 45.833 0.00 0.00 0.00 3.32
227 228 4.158209 TCCTTGATCGAACGGTATGTAACA 59.842 41.667 0.00 0.00 0.00 2.41
228 229 4.675510 TCCTTGATCGAACGGTATGTAAC 58.324 43.478 0.00 0.00 0.00 2.50
229 230 4.641541 TCTCCTTGATCGAACGGTATGTAA 59.358 41.667 0.00 0.00 0.00 2.41
230 231 4.201657 TCTCCTTGATCGAACGGTATGTA 58.798 43.478 0.00 0.00 0.00 2.29
231 232 3.021695 TCTCCTTGATCGAACGGTATGT 58.978 45.455 0.00 0.00 0.00 2.29
232 233 3.066900 ACTCTCCTTGATCGAACGGTATG 59.933 47.826 0.00 0.00 0.00 2.39
233 234 3.288964 ACTCTCCTTGATCGAACGGTAT 58.711 45.455 0.00 0.00 0.00 2.73
234 235 2.681848 GACTCTCCTTGATCGAACGGTA 59.318 50.000 0.00 0.00 0.00 4.02
235 236 1.473278 GACTCTCCTTGATCGAACGGT 59.527 52.381 0.00 0.00 0.00 4.83
236 237 1.202313 GGACTCTCCTTGATCGAACGG 60.202 57.143 0.00 0.00 32.53 4.44
237 238 1.472878 TGGACTCTCCTTGATCGAACG 59.527 52.381 0.00 0.00 37.46 3.95
238 239 3.254892 GTTGGACTCTCCTTGATCGAAC 58.745 50.000 0.00 0.00 37.46 3.95
239 240 2.094700 CGTTGGACTCTCCTTGATCGAA 60.095 50.000 0.00 0.00 37.46 3.71
240 241 1.472878 CGTTGGACTCTCCTTGATCGA 59.527 52.381 0.00 0.00 37.46 3.59
241 242 1.469940 CCGTTGGACTCTCCTTGATCG 60.470 57.143 0.00 0.00 37.46 3.69
242 243 1.550976 ACCGTTGGACTCTCCTTGATC 59.449 52.381 0.00 0.00 37.46 2.92
243 244 1.276421 CACCGTTGGACTCTCCTTGAT 59.724 52.381 0.00 0.00 37.46 2.57
244 245 0.679505 CACCGTTGGACTCTCCTTGA 59.320 55.000 0.00 0.00 37.46 3.02
245 246 0.951040 GCACCGTTGGACTCTCCTTG 60.951 60.000 0.00 0.00 37.46 3.61
246 247 1.371558 GCACCGTTGGACTCTCCTT 59.628 57.895 0.00 0.00 37.46 3.36
247 248 1.821061 CTGCACCGTTGGACTCTCCT 61.821 60.000 0.00 0.00 37.46 3.69
248 249 1.374758 CTGCACCGTTGGACTCTCC 60.375 63.158 0.00 0.00 36.96 3.71
249 250 0.667792 GTCTGCACCGTTGGACTCTC 60.668 60.000 0.00 0.00 0.00 3.20
250 251 1.367840 GTCTGCACCGTTGGACTCT 59.632 57.895 0.00 0.00 0.00 3.24
251 252 2.022129 CGTCTGCACCGTTGGACTC 61.022 63.158 0.78 0.00 0.00 3.36
252 253 1.457823 TACGTCTGCACCGTTGGACT 61.458 55.000 11.46 0.00 39.60 3.85
253 254 0.389426 ATACGTCTGCACCGTTGGAC 60.389 55.000 11.46 2.00 39.60 4.02
254 255 0.389296 CATACGTCTGCACCGTTGGA 60.389 55.000 11.46 0.00 39.60 3.53
255 256 0.389296 TCATACGTCTGCACCGTTGG 60.389 55.000 11.46 5.50 39.60 3.77
256 257 1.588404 GATCATACGTCTGCACCGTTG 59.412 52.381 11.46 9.76 39.60 4.10
257 258 1.470979 GGATCATACGTCTGCACCGTT 60.471 52.381 11.46 0.00 39.60 4.44
258 259 0.102481 GGATCATACGTCTGCACCGT 59.898 55.000 11.04 11.04 42.06 4.83
259 260 0.934901 CGGATCATACGTCTGCACCG 60.935 60.000 17.90 17.90 0.00 4.94
260 261 0.102481 ACGGATCATACGTCTGCACC 59.898 55.000 0.00 0.00 41.25 5.01
261 262 1.200483 CACGGATCATACGTCTGCAC 58.800 55.000 0.00 0.00 43.58 4.57
262 263 0.102300 CCACGGATCATACGTCTGCA 59.898 55.000 0.00 0.00 43.58 4.41
263 264 0.597637 CCCACGGATCATACGTCTGC 60.598 60.000 0.00 0.00 43.58 4.26
264 265 0.032130 CCCCACGGATCATACGTCTG 59.968 60.000 0.00 0.00 43.58 3.51
265 266 0.396695 ACCCCACGGATCATACGTCT 60.397 55.000 0.00 0.00 43.58 4.18
266 267 0.462789 AACCCCACGGATCATACGTC 59.537 55.000 0.00 0.00 43.58 4.34
267 268 0.906775 AAACCCCACGGATCATACGT 59.093 50.000 0.00 0.00 46.82 3.57
268 269 1.295792 CAAACCCCACGGATCATACG 58.704 55.000 0.00 0.00 37.36 3.06
269 270 1.675552 CCAAACCCCACGGATCATAC 58.324 55.000 0.00 0.00 0.00 2.39
270 271 0.548989 CCCAAACCCCACGGATCATA 59.451 55.000 0.00 0.00 0.00 2.15
271 272 1.306296 CCCAAACCCCACGGATCAT 59.694 57.895 0.00 0.00 0.00 2.45
272 273 1.721093 AACCCAAACCCCACGGATCA 61.721 55.000 0.00 0.00 0.00 2.92
273 274 0.963856 GAACCCAAACCCCACGGATC 60.964 60.000 0.00 0.00 0.00 3.36
274 275 1.076014 GAACCCAAACCCCACGGAT 59.924 57.895 0.00 0.00 0.00 4.18
275 276 2.079911 AGAACCCAAACCCCACGGA 61.080 57.895 0.00 0.00 0.00 4.69
276 277 1.901464 CAGAACCCAAACCCCACGG 60.901 63.158 0.00 0.00 0.00 4.94
277 278 1.901464 CCAGAACCCAAACCCCACG 60.901 63.158 0.00 0.00 0.00 4.94
278 279 2.207229 GCCAGAACCCAAACCCCAC 61.207 63.158 0.00 0.00 0.00 4.61
279 280 2.200092 GCCAGAACCCAAACCCCA 59.800 61.111 0.00 0.00 0.00 4.96
280 281 2.603473 GGCCAGAACCCAAACCCC 60.603 66.667 0.00 0.00 0.00 4.95
281 282 0.835971 ATTGGCCAGAACCCAAACCC 60.836 55.000 5.11 0.00 44.80 4.11
282 283 0.608130 GATTGGCCAGAACCCAAACC 59.392 55.000 5.11 0.00 44.80 3.27
283 284 1.273327 CTGATTGGCCAGAACCCAAAC 59.727 52.381 5.11 0.00 44.80 2.93
284 285 1.146774 TCTGATTGGCCAGAACCCAAA 59.853 47.619 5.11 0.00 44.80 3.28
285 286 0.776810 TCTGATTGGCCAGAACCCAA 59.223 50.000 5.11 0.00 45.63 4.12
286 287 0.776810 TTCTGATTGGCCAGAACCCA 59.223 50.000 5.11 0.00 45.25 4.51
287 288 3.670105 TTCTGATTGGCCAGAACCC 57.330 52.632 5.11 0.00 45.25 4.11
291 292 2.028876 CATGCATTCTGATTGGCCAGA 58.971 47.619 5.11 0.00 41.06 3.86
292 293 2.028876 TCATGCATTCTGATTGGCCAG 58.971 47.619 5.11 0.00 35.55 4.85
293 294 1.752498 GTCATGCATTCTGATTGGCCA 59.248 47.619 0.00 0.00 0.00 5.36
294 295 2.029623 AGTCATGCATTCTGATTGGCC 58.970 47.619 0.00 0.00 0.00 5.36
295 296 2.686405 TGAGTCATGCATTCTGATTGGC 59.314 45.455 0.00 0.00 0.00 4.52
296 297 4.196971 TCTGAGTCATGCATTCTGATTGG 58.803 43.478 0.00 0.00 0.00 3.16
297 298 5.527582 TGATCTGAGTCATGCATTCTGATTG 59.472 40.000 16.02 0.00 32.08 2.67
298 299 5.527951 GTGATCTGAGTCATGCATTCTGATT 59.472 40.000 16.02 2.80 32.08 2.57
299 300 5.057819 GTGATCTGAGTCATGCATTCTGAT 58.942 41.667 15.25 15.25 33.82 2.90
300 301 4.439968 GTGATCTGAGTCATGCATTCTGA 58.560 43.478 0.00 2.51 0.00 3.27
301 302 3.245519 CGTGATCTGAGTCATGCATTCTG 59.754 47.826 0.00 0.00 0.00 3.02
302 303 3.455327 CGTGATCTGAGTCATGCATTCT 58.545 45.455 0.00 0.00 0.00 2.40
303 304 3.856104 CGTGATCTGAGTCATGCATTC 57.144 47.619 0.00 0.00 0.00 2.67
308 309 1.805261 CGCGCGTGATCTGAGTCATG 61.805 60.000 24.19 0.00 38.00 3.07
309 310 1.587350 CGCGCGTGATCTGAGTCAT 60.587 57.895 24.19 0.00 0.00 3.06
310 311 2.202479 CGCGCGTGATCTGAGTCA 60.202 61.111 24.19 0.00 0.00 3.41
311 312 2.202492 ACGCGCGTGATCTGAGTC 60.202 61.111 37.37 0.00 0.00 3.36
338 339 0.447801 CACTAAACCGTGGCTGATGC 59.552 55.000 0.00 0.00 38.76 3.91
339 340 1.086696 CCACTAAACCGTGGCTGATG 58.913 55.000 0.00 0.00 46.98 3.07
340 341 3.551259 CCACTAAACCGTGGCTGAT 57.449 52.632 0.00 0.00 46.98 2.90
346 347 0.856641 CGTGTGTCCACTAAACCGTG 59.143 55.000 0.00 0.00 39.55 4.94
347 348 0.249573 CCGTGTGTCCACTAAACCGT 60.250 55.000 0.00 0.00 39.55 4.83
348 349 1.562575 GCCGTGTGTCCACTAAACCG 61.563 60.000 0.00 0.00 39.55 4.44
349 350 0.250166 AGCCGTGTGTCCACTAAACC 60.250 55.000 0.00 0.00 39.55 3.27
350 351 1.589803 AAGCCGTGTGTCCACTAAAC 58.410 50.000 0.00 0.00 39.55 2.01
351 352 2.215196 GAAAGCCGTGTGTCCACTAAA 58.785 47.619 0.00 0.00 39.55 1.85
352 353 1.139256 TGAAAGCCGTGTGTCCACTAA 59.861 47.619 0.00 0.00 39.55 2.24
353 354 0.753867 TGAAAGCCGTGTGTCCACTA 59.246 50.000 0.00 0.00 39.55 2.74
354 355 0.108585 ATGAAAGCCGTGTGTCCACT 59.891 50.000 0.00 0.00 39.55 4.00
355 356 0.238289 CATGAAAGCCGTGTGTCCAC 59.762 55.000 0.00 0.00 38.27 4.02
356 357 0.107643 TCATGAAAGCCGTGTGTCCA 59.892 50.000 0.00 0.00 33.53 4.02
357 358 0.798776 CTCATGAAAGCCGTGTGTCC 59.201 55.000 0.00 0.00 33.53 4.02
358 359 1.195448 CACTCATGAAAGCCGTGTGTC 59.805 52.381 0.00 0.00 36.64 3.67
359 360 1.202639 TCACTCATGAAAGCCGTGTGT 60.203 47.619 10.72 0.00 38.59 3.72
360 361 1.511850 TCACTCATGAAAGCCGTGTG 58.488 50.000 10.72 7.16 33.53 3.82
361 362 1.873591 GTTCACTCATGAAAGCCGTGT 59.126 47.619 10.72 0.00 46.40 4.49
362 363 1.197721 GGTTCACTCATGAAAGCCGTG 59.802 52.381 5.84 5.84 46.40 4.94
363 364 1.523758 GGTTCACTCATGAAAGCCGT 58.476 50.000 0.00 0.00 46.40 5.68
364 365 0.443869 CGGTTCACTCATGAAAGCCG 59.556 55.000 11.44 11.44 46.40 5.52
365 366 1.197721 CACGGTTCACTCATGAAAGCC 59.802 52.381 0.00 0.00 46.40 4.35
366 367 1.873591 ACACGGTTCACTCATGAAAGC 59.126 47.619 0.00 0.00 46.40 3.51
367 368 2.872245 ACACACGGTTCACTCATGAAAG 59.128 45.455 0.00 0.00 46.40 2.62
368 369 2.912771 ACACACGGTTCACTCATGAAA 58.087 42.857 0.00 0.00 46.40 2.69
369 370 2.613026 ACACACGGTTCACTCATGAA 57.387 45.000 0.00 0.00 42.73 2.57
370 371 2.613026 AACACACGGTTCACTCATGA 57.387 45.000 0.00 0.00 33.35 3.07
371 372 5.049749 TCAAATAACACACGGTTCACTCATG 60.050 40.000 0.00 0.00 40.96 3.07
372 373 5.060506 TCAAATAACACACGGTTCACTCAT 58.939 37.500 0.00 0.00 40.96 2.90
373 374 4.443621 TCAAATAACACACGGTTCACTCA 58.556 39.130 0.00 0.00 40.96 3.41
374 375 5.412526 TTCAAATAACACACGGTTCACTC 57.587 39.130 0.00 0.00 40.96 3.51
375 376 5.821516 TTTCAAATAACACACGGTTCACT 57.178 34.783 0.00 0.00 40.96 3.41
376 377 5.800941 TGTTTTCAAATAACACACGGTTCAC 59.199 36.000 0.00 0.00 40.96 3.18
377 378 5.950883 TGTTTTCAAATAACACACGGTTCA 58.049 33.333 0.00 0.00 40.96 3.18
378 379 7.458038 AATGTTTTCAAATAACACACGGTTC 57.542 32.000 0.00 0.00 40.96 3.62
379 380 7.835634 AAATGTTTTCAAATAACACACGGTT 57.164 28.000 0.00 0.00 43.62 4.44
380 381 7.974501 TGTAAATGTTTTCAAATAACACACGGT 59.025 29.630 0.00 0.00 38.23 4.83
381 382 8.341477 TGTAAATGTTTTCAAATAACACACGG 57.659 30.769 0.00 0.00 38.23 4.94
423 424 9.212641 TGAACTCATGTTTTCATTCAAACAAAA 57.787 25.926 3.28 0.00 46.95 2.44
424 425 8.768957 TGAACTCATGTTTTCATTCAAACAAA 57.231 26.923 3.28 0.00 46.95 2.83
425 426 8.945481 ATGAACTCATGTTTTCATTCAAACAA 57.055 26.923 14.86 0.00 46.95 2.83
427 428 7.379529 ACGATGAACTCATGTTTTCATTCAAAC 59.620 33.333 19.11 9.84 41.52 2.93
428 429 7.424803 ACGATGAACTCATGTTTTCATTCAAA 58.575 30.769 19.11 0.00 41.52 2.69
429 430 6.969366 ACGATGAACTCATGTTTTCATTCAA 58.031 32.000 19.11 0.00 41.52 2.69
430 431 6.558771 ACGATGAACTCATGTTTTCATTCA 57.441 33.333 19.11 10.39 41.52 2.57
431 432 7.201182 CGAAACGATGAACTCATGTTTTCATTC 60.201 37.037 19.11 14.29 41.52 2.67
432 433 6.578545 CGAAACGATGAACTCATGTTTTCATT 59.421 34.615 19.11 9.29 41.52 2.57
433 434 6.079763 CGAAACGATGAACTCATGTTTTCAT 58.920 36.000 18.52 18.52 43.62 2.57
434 435 5.439828 CGAAACGATGAACTCATGTTTTCA 58.560 37.500 12.22 12.22 37.52 2.69
435 436 4.318332 GCGAAACGATGAACTCATGTTTTC 59.682 41.667 15.25 12.79 37.52 2.29
436 437 4.219033 GCGAAACGATGAACTCATGTTTT 58.781 39.130 15.25 7.69 37.52 2.43
437 438 3.364964 GGCGAAACGATGAACTCATGTTT 60.365 43.478 14.56 14.56 38.73 2.83
438 439 2.159627 GGCGAAACGATGAACTCATGTT 59.840 45.455 0.00 0.24 36.57 2.71
439 440 1.732259 GGCGAAACGATGAACTCATGT 59.268 47.619 0.00 0.00 36.57 3.21
440 441 2.002586 AGGCGAAACGATGAACTCATG 58.997 47.619 0.00 0.00 36.57 3.07
441 442 2.271800 GAGGCGAAACGATGAACTCAT 58.728 47.619 0.00 0.00 39.70 2.90
442 443 1.671850 GGAGGCGAAACGATGAACTCA 60.672 52.381 0.00 0.00 0.00 3.41
443 444 1.000145 GGAGGCGAAACGATGAACTC 59.000 55.000 0.00 0.00 0.00 3.01
444 445 0.320374 TGGAGGCGAAACGATGAACT 59.680 50.000 0.00 0.00 0.00 3.01
445 446 1.153353 TTGGAGGCGAAACGATGAAC 58.847 50.000 0.00 0.00 0.00 3.18
446 447 2.107950 ATTGGAGGCGAAACGATGAA 57.892 45.000 0.00 0.00 0.00 2.57
447 448 2.107950 AATTGGAGGCGAAACGATGA 57.892 45.000 0.00 0.00 0.00 2.92
448 449 2.919666 AAATTGGAGGCGAAACGATG 57.080 45.000 0.00 0.00 0.00 3.84
449 450 3.934457 AAAAATTGGAGGCGAAACGAT 57.066 38.095 0.00 0.00 0.00 3.73
466 467 9.656040 CAATCATGATTTCTTACCATGGAAAAA 57.344 29.630 21.47 12.67 38.47 1.94
467 468 8.814931 ACAATCATGATTTCTTACCATGGAAAA 58.185 29.630 21.47 13.02 38.47 2.29
468 469 8.365060 ACAATCATGATTTCTTACCATGGAAA 57.635 30.769 21.47 8.90 38.47 3.13
469 470 7.959658 ACAATCATGATTTCTTACCATGGAA 57.040 32.000 21.47 7.60 38.47 3.53
470 471 7.502226 GGTACAATCATGATTTCTTACCATGGA 59.498 37.037 27.54 10.73 38.47 3.41
471 472 7.255590 GGGTACAATCATGATTTCTTACCATGG 60.256 40.741 30.23 11.19 38.47 3.66
472 473 7.503566 AGGGTACAATCATGATTTCTTACCATG 59.496 37.037 30.23 18.20 39.08 3.66
473 474 7.586349 AGGGTACAATCATGATTTCTTACCAT 58.414 34.615 30.23 26.10 33.68 3.55
474 475 6.969043 AGGGTACAATCATGATTTCTTACCA 58.031 36.000 30.23 10.70 33.68 3.25
475 476 9.003658 CATAGGGTACAATCATGATTTCTTACC 57.996 37.037 26.07 26.07 32.49 2.85
476 477 9.003658 CCATAGGGTACAATCATGATTTCTTAC 57.996 37.037 18.41 17.27 0.00 2.34
513 514 1.813786 GCCGCTTGGTAAAATGTACCA 59.186 47.619 0.00 0.00 45.08 3.25
514 515 1.813786 TGCCGCTTGGTAAAATGTACC 59.186 47.619 0.00 0.00 38.07 3.34
515 516 2.159435 CCTGCCGCTTGGTAAAATGTAC 60.159 50.000 0.00 0.00 34.16 2.90
516 517 2.088423 CCTGCCGCTTGGTAAAATGTA 58.912 47.619 0.00 0.00 34.16 2.29
517 518 0.887933 CCTGCCGCTTGGTAAAATGT 59.112 50.000 0.00 0.00 34.16 2.71
518 519 0.458370 GCCTGCCGCTTGGTAAAATG 60.458 55.000 0.00 0.00 34.16 2.32
519 520 1.604147 GGCCTGCCGCTTGGTAAAAT 61.604 55.000 0.00 0.00 37.74 1.82
520 521 2.272447 GGCCTGCCGCTTGGTAAAA 61.272 57.895 0.00 0.00 37.74 1.52
521 522 2.675075 GGCCTGCCGCTTGGTAAA 60.675 61.111 0.00 0.00 37.74 2.01
522 523 3.646715 AGGCCTGCCGCTTGGTAA 61.647 61.111 3.11 0.00 41.95 2.85
523 524 4.408821 CAGGCCTGCCGCTTGGTA 62.409 66.667 22.33 0.00 40.79 3.25
531 532 3.728292 ATTGCTAGCCAGGCCTGCC 62.728 63.158 28.39 17.98 0.00 4.85
532 533 2.123982 ATTGCTAGCCAGGCCTGC 60.124 61.111 28.39 21.70 0.00 4.85
533 534 0.534652 GAGATTGCTAGCCAGGCCTG 60.535 60.000 26.87 26.87 0.00 4.85
534 535 0.984961 TGAGATTGCTAGCCAGGCCT 60.985 55.000 13.29 0.00 0.00 5.19
535 536 0.107017 TTGAGATTGCTAGCCAGGCC 60.107 55.000 13.29 0.00 0.00 5.19
536 537 1.403323 GTTTGAGATTGCTAGCCAGGC 59.597 52.381 13.29 1.84 0.00 4.85
537 538 2.996631 AGTTTGAGATTGCTAGCCAGG 58.003 47.619 13.29 0.00 0.00 4.45
538 539 4.456911 TCAAAGTTTGAGATTGCTAGCCAG 59.543 41.667 14.35 0.00 34.08 4.85
539 540 4.397420 TCAAAGTTTGAGATTGCTAGCCA 58.603 39.130 14.35 0.19 34.08 4.75
540 541 5.376854 TTCAAAGTTTGAGATTGCTAGCC 57.623 39.130 17.36 0.00 41.38 3.93
541 542 7.167136 GCATATTCAAAGTTTGAGATTGCTAGC 59.833 37.037 25.64 8.10 41.38 3.42
542 543 8.186163 TGCATATTCAAAGTTTGAGATTGCTAG 58.814 33.333 29.02 15.49 41.38 3.42
543 544 8.054152 TGCATATTCAAAGTTTGAGATTGCTA 57.946 30.769 29.02 20.40 41.38 3.49
544 545 6.927416 TGCATATTCAAAGTTTGAGATTGCT 58.073 32.000 29.02 14.02 41.38 3.91
545 546 7.585286 TTGCATATTCAAAGTTTGAGATTGC 57.415 32.000 25.91 25.91 41.38 3.56
706 713 5.746245 CACTCCTGTAGAGAAAAATAGCTCG 59.254 44.000 0.00 0.00 46.50 5.03
835 858 0.965866 TTCTCTCATGCTCCCGTCGT 60.966 55.000 0.00 0.00 0.00 4.34
866 889 0.179137 CATGGACGCGTGCTTCTCTA 60.179 55.000 30.67 10.61 0.00 2.43
890 913 0.183492 TTGCTGCACCAAGTCCTCTT 59.817 50.000 0.00 0.00 0.00 2.85
893 919 1.893808 CGTTGCTGCACCAAGTCCT 60.894 57.895 0.00 0.00 0.00 3.85
1215 1250 4.760047 GGCGACCTCGTGCATGGT 62.760 66.667 5.98 7.40 42.22 3.55
1672 1715 4.261741 CCATGTATTTACAAGCATGAGGGC 60.262 45.833 0.00 0.00 40.61 5.19
1673 1716 5.132502 TCCATGTATTTACAAGCATGAGGG 58.867 41.667 0.00 0.00 40.61 4.30
1676 1720 7.012610 CACTCATCCATGTATTTACAAGCATGA 59.987 37.037 0.00 1.07 40.61 3.07
1810 1856 6.017934 AGTGCCATTTCGTGATAACATCATAC 60.018 38.462 0.00 0.00 42.04 2.39
2018 2067 6.038492 ACGAGGAAAATCTTACGGAAAAACAA 59.962 34.615 0.00 0.00 0.00 2.83
2330 2399 6.256539 CAGAATGTTTATCGTGTGTGCTCTAT 59.743 38.462 0.00 0.00 0.00 1.98
2697 2777 3.997021 AGAAGTCCAAAACATCGTAGCAG 59.003 43.478 0.00 0.00 30.85 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.