Multiple sequence alignment - TraesCS5A01G096800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G096800 chr5A 100.000 5099 0 0 1 5099 136408009 136402911 0.000000e+00 9417.0
1 TraesCS5A01G096800 chr5A 84.000 75 11 1 368 441 521009927 521010001 2.550000e-08 71.3
2 TraesCS5A01G096800 chr5D 96.206 3585 87 15 566 4148 123500011 123496474 0.000000e+00 5821.0
3 TraesCS5A01G096800 chr5D 88.081 495 37 9 1 475 123500536 123500044 7.410000e-158 568.0
4 TraesCS5A01G096800 chr5D 83.784 333 25 3 4795 5099 123495675 123495344 6.460000e-74 289.0
5 TraesCS5A01G096800 chr5D 98.639 147 2 0 4539 4685 123496482 123496336 1.410000e-65 261.0
6 TraesCS5A01G096800 chr5D 94.681 94 4 1 4711 4803 123496216 123496123 1.480000e-30 145.0
7 TraesCS5A01G096800 chr5B 94.785 3739 125 23 439 4147 136434733 136431035 0.000000e+00 5760.0
8 TraesCS5A01G096800 chr5B 90.323 372 29 5 1 371 136435224 136434859 9.930000e-132 481.0
9 TraesCS5A01G096800 chr5B 78.661 239 40 7 2568 2803 508590613 508590383 1.140000e-31 148.0
10 TraesCS5A01G096800 chr5B 87.671 73 8 1 368 439 136434842 136434770 3.270000e-12 84.2
11 TraesCS5A01G096800 chr1B 83.532 1093 124 24 2655 3735 441208321 441209369 0.000000e+00 970.0
12 TraesCS5A01G096800 chr7D 94.859 389 15 4 4152 4537 151784754 151784368 2.030000e-168 603.0
13 TraesCS5A01G096800 chr7D 87.879 396 33 12 4149 4537 373052468 373052081 7.790000e-123 451.0
14 TraesCS5A01G096800 chr7D 87.701 374 36 5 3325 3690 626385956 626385585 1.310000e-115 427.0
15 TraesCS5A01G096800 chr7D 84.120 466 42 17 2829 3291 626386393 626385957 6.100000e-114 422.0
16 TraesCS5A01G096800 chr7D 88.980 245 23 3 2429 2669 626387147 626386903 2.980000e-77 300.0
17 TraesCS5A01G096800 chr7D 83.957 187 14 5 2658 2844 626386883 626386713 1.140000e-36 165.0
18 TraesCS5A01G096800 chr2A 93.671 395 19 5 4150 4541 535095194 535095585 2.050000e-163 586.0
19 TraesCS5A01G096800 chr4D 90.026 391 33 4 4149 4537 410410633 410410247 7.620000e-138 501.0
20 TraesCS5A01G096800 chr7A 89.003 391 39 3 4150 4537 10224768 10225157 9.930000e-132 481.0
21 TraesCS5A01G096800 chr3A 88.608 395 41 3 4146 4537 487478398 487478791 1.280000e-130 477.0
22 TraesCS5A01G096800 chr2B 88.773 383 39 3 4152 4532 385767447 385767067 2.780000e-127 466.0
23 TraesCS5A01G096800 chr2B 90.805 87 8 0 2429 2515 52916233 52916319 3.230000e-22 117.0
24 TraesCS5A01G096800 chr1A 87.980 391 39 7 4150 4537 15721395 15721780 6.020000e-124 455.0
25 TraesCS5A01G096800 chr6B 87.595 395 37 7 4146 4537 372583739 372583354 1.010000e-121 448.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G096800 chr5A 136402911 136408009 5098 True 9417.0 9417 100.000000 1 5099 1 chr5A.!!$R1 5098
1 TraesCS5A01G096800 chr5D 123495344 123500536 5192 True 1416.8 5821 92.278200 1 5099 5 chr5D.!!$R1 5098
2 TraesCS5A01G096800 chr5B 136431035 136435224 4189 True 2108.4 5760 90.926333 1 4147 3 chr5B.!!$R2 4146
3 TraesCS5A01G096800 chr1B 441208321 441209369 1048 False 970.0 970 83.532000 2655 3735 1 chr1B.!!$F1 1080
4 TraesCS5A01G096800 chr7D 626385585 626387147 1562 True 328.5 427 86.189500 2429 3690 4 chr7D.!!$R3 1261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 991 0.394080 AGAACCCGTCTACCTCTCCG 60.394 60.000 0.00 0.0 33.56 4.63 F
1375 1451 0.164647 CAAGGCGAAGAGAAAGCGTG 59.835 55.000 0.00 0.0 0.00 5.34 F
1682 1761 0.759346 AGCTCAACAAGGAGGAACGT 59.241 50.000 0.00 0.0 35.41 3.99 F
1688 1767 2.206036 AAGGAGGAACGTCCCCCA 59.794 61.111 9.49 0.0 37.19 4.96 F
2215 2296 4.101741 CCCCCAAACCAGTTTAATTGAACA 59.898 41.667 14.74 0.0 31.94 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2490 0.250553 AGGAACAAATCGTCCCGCAA 60.251 50.000 0.00 0.0 0.00 4.85 R
2410 2491 0.250553 AAGGAACAAATCGTCCCGCA 60.251 50.000 0.00 0.0 0.00 5.69 R
2487 2568 1.001378 GATTTTGTGAGCCGTGCAACT 60.001 47.619 0.00 0.0 31.75 3.16 R
2711 2829 2.443255 ACACCTGATCCCTTGTGAAAGT 59.557 45.455 7.68 0.0 33.08 2.66 R
4148 4626 0.031857 TGTGCCAAAGTGCATTTCCG 59.968 50.000 0.00 0.0 44.30 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.594038 GTGTAATTAATGTATTAATCTGGTGCG 57.406 33.333 9.58 0.00 40.90 5.34
40 41 8.138712 TGTATTAATCTGGTGCGTTTTCTTTTT 58.861 29.630 0.00 0.00 0.00 1.94
79 81 4.222810 TGCTCTTCTCTACAACTATGCCAA 59.777 41.667 0.00 0.00 0.00 4.52
116 118 9.365906 TGCATATGTGATCCATAAACCTTATTT 57.634 29.630 4.29 0.00 39.43 1.40
118 120 9.630098 CATATGTGATCCATAAACCTTATTTGC 57.370 33.333 7.65 0.00 39.43 3.68
175 177 4.222114 GCAGCATCACTTAGAAACAACAC 58.778 43.478 0.00 0.00 0.00 3.32
180 182 6.770785 AGCATCACTTAGAAACAACACCTAAA 59.229 34.615 0.00 0.00 0.00 1.85
186 188 8.122952 CACTTAGAAACAACACCTAAAAGACAG 58.877 37.037 0.00 0.00 0.00 3.51
293 295 4.006319 GCTCACTTGAAGTTAATGCTCCT 58.994 43.478 0.00 0.00 0.00 3.69
408 431 1.990060 AAGGAGCGAGCTAGCCCAA 60.990 57.895 21.88 0.00 38.01 4.12
424 447 1.032114 CCAACCGGGCTTGAATCCTC 61.032 60.000 6.32 0.00 0.00 3.71
457 517 2.111384 TGCTAGTCCTGAATGGTCTCC 58.889 52.381 0.00 0.00 35.81 3.71
535 595 6.567687 TCATTTCCTTCGTTGATTTGCTAA 57.432 33.333 0.00 0.00 0.00 3.09
537 597 4.419522 TTCCTTCGTTGATTTGCTAAGC 57.580 40.909 0.00 0.00 0.00 3.09
541 601 4.870426 CCTTCGTTGATTTGCTAAGCTAGA 59.130 41.667 0.00 0.00 0.00 2.43
548 608 7.465173 GTTGATTTGCTAAGCTAGAACCTAAC 58.535 38.462 0.00 0.00 0.00 2.34
549 609 6.707290 TGATTTGCTAAGCTAGAACCTAACA 58.293 36.000 0.00 0.00 0.00 2.41
556 617 8.920174 TGCTAAGCTAGAACCTAACATATGTTA 58.080 33.333 23.51 23.51 39.31 2.41
596 657 8.857098 AGAACCTAGCGTATGTTTAGATTATCA 58.143 33.333 0.00 0.00 0.00 2.15
731 801 1.723608 TTTGGTGTTGTGCTGAGCCG 61.724 55.000 0.23 0.00 0.00 5.52
791 861 0.968393 TTCGCAGGCAATAAACCCCC 60.968 55.000 0.00 0.00 0.00 5.40
876 946 1.862201 TCACCGATAATAAAAGCCGCG 59.138 47.619 0.00 0.00 0.00 6.46
910 980 2.580601 CCGGTCTCCAAGAACCCGT 61.581 63.158 0.00 0.00 33.52 5.28
912 982 1.533469 CGGTCTCCAAGAACCCGTCT 61.533 60.000 0.00 0.00 38.69 4.18
921 991 0.394080 AGAACCCGTCTACCTCTCCG 60.394 60.000 0.00 0.00 33.56 4.63
964 1034 1.805539 TCTGCGATTTCGTGGAGCG 60.806 57.895 1.55 0.00 42.22 5.03
1043 1119 5.617252 ACGATCTCTTTCCCTGTTGTTTAA 58.383 37.500 0.00 0.00 0.00 1.52
1045 1121 5.106673 CGATCTCTTTCCCTGTTGTTTAACC 60.107 44.000 0.00 0.00 35.92 2.85
1068 1144 5.120208 CCTCGTGTTAATCGTTGATTCTTGT 59.880 40.000 0.00 0.00 33.95 3.16
1112 1188 3.440522 GTGAAATTAAGAGGTCCTGCCAC 59.559 47.826 0.00 0.00 40.61 5.01
1153 1229 1.341209 GCCAACTTTGAGTTCTTGGGG 59.659 52.381 0.00 0.00 36.03 4.96
1308 1384 8.593492 AGATGTTTATTTTTGGAAAGTTCAGC 57.407 30.769 0.00 0.00 0.00 4.26
1321 1397 6.777580 TGGAAAGTTCAGCCTTTAGATCTTTT 59.222 34.615 0.00 0.00 35.22 2.27
1371 1447 5.157067 GGAAATTTCAAGGCGAAGAGAAAG 58.843 41.667 19.49 0.00 34.32 2.62
1375 1451 0.164647 CAAGGCGAAGAGAAAGCGTG 59.835 55.000 0.00 0.00 0.00 5.34
1451 1527 8.925161 TTCAAGACAACATAAGTTTCCAAAAG 57.075 30.769 0.00 0.00 35.28 2.27
1507 1584 2.271944 ACCTTCAGTTTCTTTCCCCG 57.728 50.000 0.00 0.00 0.00 5.73
1539 1616 6.829229 TTCCAGATAGTTCGTTCTTCAGTA 57.171 37.500 0.00 0.00 0.00 2.74
1591 1670 9.281371 GTGAGTTTTGGTAAAAGGTACTATCTT 57.719 33.333 0.00 0.00 38.49 2.40
1595 1674 7.457024 TTTGGTAAAAGGTACTATCTTTGCC 57.543 36.000 0.00 2.83 38.49 4.52
1682 1761 0.759346 AGCTCAACAAGGAGGAACGT 59.241 50.000 0.00 0.00 35.41 3.99
1688 1767 2.206036 AAGGAGGAACGTCCCCCA 59.794 61.111 9.49 0.00 37.19 4.96
1900 1979 4.361783 TGACATTCAGGTCAGGGAGATTA 58.638 43.478 0.00 0.00 42.56 1.75
2175 2256 9.768662 AACAAGAATGCAAATAAGTTGATCTTT 57.231 25.926 0.00 0.00 39.87 2.52
2215 2296 4.101741 CCCCCAAACCAGTTTAATTGAACA 59.898 41.667 14.74 0.00 31.94 3.18
2391 2472 4.522789 TCCCTTTCTCCAATTTCTTTTCCG 59.477 41.667 0.00 0.00 0.00 4.30
2402 2483 6.705825 CCAATTTCTTTTCCGATTTGTTCCTT 59.294 34.615 0.00 0.00 0.00 3.36
2403 2484 7.226523 CCAATTTCTTTTCCGATTTGTTCCTTT 59.773 33.333 0.00 0.00 0.00 3.11
2404 2485 8.611757 CAATTTCTTTTCCGATTTGTTCCTTTT 58.388 29.630 0.00 0.00 0.00 2.27
2405 2486 8.731275 ATTTCTTTTCCGATTTGTTCCTTTTT 57.269 26.923 0.00 0.00 0.00 1.94
2487 2568 8.463930 AGAAGGATGTTAATGAAGTGACAAAA 57.536 30.769 0.00 0.00 0.00 2.44
2611 2696 8.135382 ACGCATAGTAATCCAATAGTATTCCT 57.865 34.615 0.00 0.00 0.00 3.36
2711 2829 0.951558 GCAAACAGAGAAAAGCCGGA 59.048 50.000 5.05 0.00 0.00 5.14
3356 3814 8.031864 CGTGCTGATGAAGAGGTATAAATATCT 58.968 37.037 0.00 0.00 0.00 1.98
3395 3861 3.325870 TCAAGTCACAATCACTAAGCGG 58.674 45.455 0.00 0.00 0.00 5.52
3924 4393 6.119240 TCCTGACTTTTTCTGATCATGTCT 57.881 37.500 0.00 0.00 0.00 3.41
3925 4394 6.169094 TCCTGACTTTTTCTGATCATGTCTC 58.831 40.000 0.00 0.00 0.00 3.36
4115 4593 5.707764 AGAAGTAGGGAAAAAGAAGCATCAC 59.292 40.000 0.00 0.00 0.00 3.06
4142 4620 9.400638 GCTATGCTAGGACAATATACGATATTC 57.599 37.037 0.00 0.00 0.00 1.75
4143 4621 9.900710 CTATGCTAGGACAATATACGATATTCC 57.099 37.037 0.00 0.00 0.00 3.01
4144 4622 7.712204 TGCTAGGACAATATACGATATTCCA 57.288 36.000 0.00 0.00 0.00 3.53
4145 4623 8.306313 TGCTAGGACAATATACGATATTCCAT 57.694 34.615 0.00 0.00 0.00 3.41
4146 4624 9.416284 TGCTAGGACAATATACGATATTCCATA 57.584 33.333 0.00 0.00 0.00 2.74
4162 4640 4.898829 TCCATATCGGAAATGCACTTTG 57.101 40.909 0.00 0.00 42.52 2.77
4163 4641 3.631686 TCCATATCGGAAATGCACTTTGG 59.368 43.478 0.00 0.00 42.52 3.28
4164 4642 3.374745 CATATCGGAAATGCACTTTGGC 58.625 45.455 0.00 0.00 0.00 4.52
4165 4643 6.231412 CCATATCGGAAATGCACTTTGGCA 62.231 45.833 0.00 0.00 42.94 4.92
4171 4649 3.457484 TGCACTTTGGCACATGGG 58.543 55.556 0.00 0.00 39.25 4.00
4172 4650 1.152589 TGCACTTTGGCACATGGGA 60.153 52.632 0.00 0.00 39.25 4.37
4173 4651 1.180456 TGCACTTTGGCACATGGGAG 61.180 55.000 0.00 0.00 39.25 4.30
4174 4652 1.588082 CACTTTGGCACATGGGAGC 59.412 57.895 0.00 0.00 39.30 4.70
4175 4653 1.153524 ACTTTGGCACATGGGAGCA 59.846 52.632 0.00 0.00 39.30 4.26
4176 4654 0.251922 ACTTTGGCACATGGGAGCAT 60.252 50.000 0.00 0.00 39.30 3.79
4177 4655 0.174845 CTTTGGCACATGGGAGCATG 59.825 55.000 0.00 0.00 39.30 4.06
4178 4656 1.890625 TTTGGCACATGGGAGCATGC 61.891 55.000 10.51 10.51 39.30 4.06
4179 4657 2.441532 GGCACATGGGAGCATGCT 60.442 61.111 22.92 22.92 38.18 3.79
4180 4658 2.487532 GGCACATGGGAGCATGCTC 61.488 63.158 34.99 34.99 42.04 4.26
4191 4669 3.409201 GCATGCTCCTGCTATTGGA 57.591 52.632 11.37 0.00 39.12 3.53
4192 4670 1.683943 GCATGCTCCTGCTATTGGAA 58.316 50.000 11.37 0.00 39.12 3.53
4193 4671 2.026641 GCATGCTCCTGCTATTGGAAA 58.973 47.619 11.37 0.00 39.12 3.13
4194 4672 2.428171 GCATGCTCCTGCTATTGGAAAA 59.572 45.455 11.37 0.00 39.12 2.29
4195 4673 3.119029 GCATGCTCCTGCTATTGGAAAAA 60.119 43.478 11.37 0.00 39.12 1.94
4196 4674 4.442472 GCATGCTCCTGCTATTGGAAAAAT 60.442 41.667 11.37 0.00 39.12 1.82
4197 4675 5.221303 GCATGCTCCTGCTATTGGAAAAATA 60.221 40.000 11.37 0.00 39.12 1.40
4198 4676 6.517864 GCATGCTCCTGCTATTGGAAAAATAT 60.518 38.462 11.37 0.00 39.12 1.28
4199 4677 7.439381 CATGCTCCTGCTATTGGAAAAATATT 58.561 34.615 0.00 0.00 40.48 1.28
4200 4678 7.422465 TGCTCCTGCTATTGGAAAAATATTT 57.578 32.000 0.00 0.00 40.48 1.40
4201 4679 7.491682 TGCTCCTGCTATTGGAAAAATATTTC 58.508 34.615 0.10 0.00 40.98 2.17
4202 4680 7.123997 TGCTCCTGCTATTGGAAAAATATTTCA 59.876 33.333 0.10 0.00 42.16 2.69
4203 4681 7.981225 GCTCCTGCTATTGGAAAAATATTTCAA 59.019 33.333 0.10 2.42 40.35 2.69
4204 4682 9.874205 CTCCTGCTATTGGAAAAATATTTCAAA 57.126 29.630 0.10 0.00 45.53 2.69
4244 4722 9.790389 TCAAACAAAAATTTAACGTGTACATCT 57.210 25.926 0.00 0.00 0.00 2.90
4247 4725 9.790389 AACAAAAATTTAACGTGTACATCTTCA 57.210 25.926 0.00 0.00 0.00 3.02
4248 4726 9.959749 ACAAAAATTTAACGTGTACATCTTCAT 57.040 25.926 0.00 0.00 0.00 2.57
4257 4735 7.875316 ACGTGTACATCTTCATATTCTATGC 57.125 36.000 0.00 0.00 0.00 3.14
4258 4736 7.433680 ACGTGTACATCTTCATATTCTATGCA 58.566 34.615 0.00 0.00 0.00 3.96
4259 4737 7.596621 ACGTGTACATCTTCATATTCTATGCAG 59.403 37.037 0.00 0.00 0.00 4.41
4260 4738 7.062722 CGTGTACATCTTCATATTCTATGCAGG 59.937 40.741 0.00 0.00 0.00 4.85
4261 4739 6.875726 TGTACATCTTCATATTCTATGCAGGC 59.124 38.462 0.00 0.00 0.00 4.85
4262 4740 5.872963 ACATCTTCATATTCTATGCAGGCA 58.127 37.500 0.00 0.00 0.00 4.75
4263 4741 5.704515 ACATCTTCATATTCTATGCAGGCAC 59.295 40.000 0.00 0.00 0.00 5.01
4264 4742 4.309933 TCTTCATATTCTATGCAGGCACG 58.690 43.478 0.00 0.00 0.00 5.34
4265 4743 2.416747 TCATATTCTATGCAGGCACGC 58.583 47.619 0.00 0.00 0.00 5.34
4266 4744 1.466167 CATATTCTATGCAGGCACGCC 59.534 52.381 0.00 0.00 0.00 5.68
4267 4745 0.467804 TATTCTATGCAGGCACGCCA 59.532 50.000 11.35 0.00 38.92 5.69
4268 4746 0.394216 ATTCTATGCAGGCACGCCAA 60.394 50.000 11.35 0.00 38.92 4.52
4269 4747 1.026182 TTCTATGCAGGCACGCCAAG 61.026 55.000 11.35 3.43 38.92 3.61
4270 4748 1.746615 CTATGCAGGCACGCCAAGT 60.747 57.895 11.35 0.00 38.92 3.16
4271 4749 1.303236 TATGCAGGCACGCCAAGTT 60.303 52.632 11.35 0.00 38.92 2.66
4272 4750 0.893270 TATGCAGGCACGCCAAGTTT 60.893 50.000 11.35 0.00 38.92 2.66
4273 4751 2.050077 GCAGGCACGCCAAGTTTC 60.050 61.111 11.35 0.00 38.92 2.78
4274 4752 2.844451 GCAGGCACGCCAAGTTTCA 61.844 57.895 11.35 0.00 38.92 2.69
4275 4753 1.008538 CAGGCACGCCAAGTTTCAC 60.009 57.895 11.35 0.00 38.92 3.18
4276 4754 1.453015 AGGCACGCCAAGTTTCACA 60.453 52.632 11.35 0.00 38.92 3.58
4277 4755 0.823356 AGGCACGCCAAGTTTCACAT 60.823 50.000 11.35 0.00 38.92 3.21
4278 4756 0.878416 GGCACGCCAAGTTTCACATA 59.122 50.000 2.36 0.00 35.81 2.29
4279 4757 1.268352 GGCACGCCAAGTTTCACATAA 59.732 47.619 2.36 0.00 35.81 1.90
4280 4758 2.287909 GGCACGCCAAGTTTCACATAAA 60.288 45.455 2.36 0.00 35.81 1.40
4281 4759 3.376540 GCACGCCAAGTTTCACATAAAA 58.623 40.909 0.00 0.00 0.00 1.52
4282 4760 3.181575 GCACGCCAAGTTTCACATAAAAC 59.818 43.478 0.00 0.00 39.03 2.43
4283 4761 3.733727 CACGCCAAGTTTCACATAAAACC 59.266 43.478 0.00 0.00 39.46 3.27
4284 4762 3.381908 ACGCCAAGTTTCACATAAAACCA 59.618 39.130 0.00 0.00 39.46 3.67
4285 4763 3.980775 CGCCAAGTTTCACATAAAACCAG 59.019 43.478 0.00 0.00 39.46 4.00
4286 4764 3.740832 GCCAAGTTTCACATAAAACCAGC 59.259 43.478 0.00 0.00 39.46 4.85
4287 4765 4.739137 GCCAAGTTTCACATAAAACCAGCA 60.739 41.667 0.00 0.00 39.46 4.41
4288 4766 5.540911 CCAAGTTTCACATAAAACCAGCAT 58.459 37.500 0.00 0.00 39.46 3.79
4289 4767 5.990996 CCAAGTTTCACATAAAACCAGCATT 59.009 36.000 0.00 0.00 39.46 3.56
4290 4768 6.482973 CCAAGTTTCACATAAAACCAGCATTT 59.517 34.615 0.00 0.00 39.46 2.32
4291 4769 7.012232 CCAAGTTTCACATAAAACCAGCATTTT 59.988 33.333 0.00 0.00 39.46 1.82
4292 4770 8.397148 CAAGTTTCACATAAAACCAGCATTTTT 58.603 29.630 0.00 0.00 39.46 1.94
4339 4817 6.731292 AAAAATGTCTAGTGAAAAGCCCTT 57.269 33.333 0.00 0.00 0.00 3.95
4340 4818 6.731292 AAAATGTCTAGTGAAAAGCCCTTT 57.269 33.333 0.00 0.00 0.00 3.11
4341 4819 5.712152 AATGTCTAGTGAAAAGCCCTTTG 57.288 39.130 0.00 0.00 32.36 2.77
4342 4820 2.884639 TGTCTAGTGAAAAGCCCTTTGC 59.115 45.455 0.00 0.00 41.71 3.68
4343 4821 2.884639 GTCTAGTGAAAAGCCCTTTGCA 59.115 45.455 0.00 0.00 44.83 4.08
4344 4822 3.317993 GTCTAGTGAAAAGCCCTTTGCAA 59.682 43.478 3.07 0.00 39.62 4.08
4345 4823 2.602257 AGTGAAAAGCCCTTTGCAAC 57.398 45.000 0.00 0.00 39.62 4.17
4346 4824 1.830477 AGTGAAAAGCCCTTTGCAACA 59.170 42.857 0.00 0.00 39.62 3.33
4347 4825 1.933181 GTGAAAAGCCCTTTGCAACAC 59.067 47.619 0.00 0.00 39.62 3.32
4348 4826 1.134551 TGAAAAGCCCTTTGCAACACC 60.135 47.619 0.00 0.00 44.83 4.16
4349 4827 0.908198 AAAAGCCCTTTGCAACACCA 59.092 45.000 0.00 0.00 44.83 4.17
4350 4828 0.908198 AAAGCCCTTTGCAACACCAA 59.092 45.000 0.00 0.00 44.83 3.67
4351 4829 0.908198 AAGCCCTTTGCAACACCAAA 59.092 45.000 0.00 0.00 44.83 3.28
4352 4830 1.130777 AGCCCTTTGCAACACCAAAT 58.869 45.000 0.00 0.00 44.83 2.32
4353 4831 1.490069 AGCCCTTTGCAACACCAAATT 59.510 42.857 0.00 0.00 44.83 1.82
4354 4832 2.092484 AGCCCTTTGCAACACCAAATTT 60.092 40.909 0.00 0.00 44.83 1.82
4355 4833 2.687425 GCCCTTTGCAACACCAAATTTT 59.313 40.909 0.00 0.00 40.77 1.82
4356 4834 3.879892 GCCCTTTGCAACACCAAATTTTA 59.120 39.130 0.00 0.00 40.77 1.52
4357 4835 4.518590 GCCCTTTGCAACACCAAATTTTAT 59.481 37.500 0.00 0.00 40.77 1.40
4358 4836 5.334802 GCCCTTTGCAACACCAAATTTTATC 60.335 40.000 0.00 0.00 40.77 1.75
4359 4837 5.997129 CCCTTTGCAACACCAAATTTTATCT 59.003 36.000 0.00 0.00 34.50 1.98
4360 4838 6.486320 CCCTTTGCAACACCAAATTTTATCTT 59.514 34.615 0.00 0.00 34.50 2.40
4361 4839 7.013178 CCCTTTGCAACACCAAATTTTATCTTT 59.987 33.333 0.00 0.00 34.50 2.52
4362 4840 8.404765 CCTTTGCAACACCAAATTTTATCTTTT 58.595 29.630 0.00 0.00 34.50 2.27
4363 4841 9.786105 CTTTGCAACACCAAATTTTATCTTTTT 57.214 25.926 0.00 0.00 34.50 1.94
4364 4842 9.780413 TTTGCAACACCAAATTTTATCTTTTTC 57.220 25.926 0.00 0.00 30.28 2.29
4365 4843 8.498054 TGCAACACCAAATTTTATCTTTTTCA 57.502 26.923 0.00 0.00 0.00 2.69
4366 4844 8.394121 TGCAACACCAAATTTTATCTTTTTCAC 58.606 29.630 0.00 0.00 0.00 3.18
4367 4845 8.394121 GCAACACCAAATTTTATCTTTTTCACA 58.606 29.630 0.00 0.00 0.00 3.58
4368 4846 9.701355 CAACACCAAATTTTATCTTTTTCACAC 57.299 29.630 0.00 0.00 0.00 3.82
4369 4847 8.125728 ACACCAAATTTTATCTTTTTCACACG 57.874 30.769 0.00 0.00 0.00 4.49
4370 4848 7.062848 CACCAAATTTTATCTTTTTCACACGC 58.937 34.615 0.00 0.00 0.00 5.34
4371 4849 6.758886 ACCAAATTTTATCTTTTTCACACGCA 59.241 30.769 0.00 0.00 0.00 5.24
4372 4850 7.278868 ACCAAATTTTATCTTTTTCACACGCAA 59.721 29.630 0.00 0.00 0.00 4.85
4373 4851 7.582319 CCAAATTTTATCTTTTTCACACGCAAC 59.418 33.333 0.00 0.00 0.00 4.17
4374 4852 7.763172 AATTTTATCTTTTTCACACGCAACA 57.237 28.000 0.00 0.00 0.00 3.33
4375 4853 6.561945 TTTTATCTTTTTCACACGCAACAC 57.438 33.333 0.00 0.00 0.00 3.32
4376 4854 3.773860 ATCTTTTTCACACGCAACACA 57.226 38.095 0.00 0.00 0.00 3.72
4377 4855 3.560902 TCTTTTTCACACGCAACACAA 57.439 38.095 0.00 0.00 0.00 3.33
4378 4856 3.902150 TCTTTTTCACACGCAACACAAA 58.098 36.364 0.00 0.00 0.00 2.83
4379 4857 4.299155 TCTTTTTCACACGCAACACAAAA 58.701 34.783 0.00 0.00 0.00 2.44
4380 4858 4.745125 TCTTTTTCACACGCAACACAAAAA 59.255 33.333 0.00 0.00 0.00 1.94
4381 4859 5.406780 TCTTTTTCACACGCAACACAAAAAT 59.593 32.000 0.00 0.00 0.00 1.82
4382 4860 5.597813 TTTTCACACGCAACACAAAAATT 57.402 30.435 0.00 0.00 0.00 1.82
4383 4861 6.706055 TTTTCACACGCAACACAAAAATTA 57.294 29.167 0.00 0.00 0.00 1.40
4384 4862 6.893958 TTTCACACGCAACACAAAAATTAT 57.106 29.167 0.00 0.00 0.00 1.28
4385 4863 6.503616 TTCACACGCAACACAAAAATTATC 57.496 33.333 0.00 0.00 0.00 1.75
4386 4864 5.826586 TCACACGCAACACAAAAATTATCT 58.173 33.333 0.00 0.00 0.00 1.98
4387 4865 5.685068 TCACACGCAACACAAAAATTATCTG 59.315 36.000 0.00 0.00 0.00 2.90
4388 4866 5.458452 CACACGCAACACAAAAATTATCTGT 59.542 36.000 0.00 0.00 0.00 3.41
4389 4867 6.019961 CACACGCAACACAAAAATTATCTGTT 60.020 34.615 0.00 0.00 0.00 3.16
4390 4868 6.533367 ACACGCAACACAAAAATTATCTGTTT 59.467 30.769 0.00 0.00 0.00 2.83
4391 4869 7.064016 ACACGCAACACAAAAATTATCTGTTTT 59.936 29.630 0.00 0.00 0.00 2.43
4392 4870 7.902403 CACGCAACACAAAAATTATCTGTTTTT 59.098 29.630 0.00 0.00 38.82 1.94
4393 4871 8.113675 ACGCAACACAAAAATTATCTGTTTTTC 58.886 29.630 0.00 0.00 36.82 2.29
4394 4872 7.582319 CGCAACACAAAAATTATCTGTTTTTCC 59.418 33.333 0.00 0.00 36.82 3.13
4395 4873 8.394121 GCAACACAAAAATTATCTGTTTTTCCA 58.606 29.630 0.00 0.00 36.82 3.53
4396 4874 9.701355 CAACACAAAAATTATCTGTTTTTCCAC 57.299 29.630 0.00 0.00 36.82 4.02
4397 4875 8.125728 ACACAAAAATTATCTGTTTTTCCACG 57.874 30.769 0.00 0.00 36.82 4.94
4398 4876 7.976734 ACACAAAAATTATCTGTTTTTCCACGA 59.023 29.630 0.00 0.00 36.82 4.35
4399 4877 8.812329 CACAAAAATTATCTGTTTTTCCACGAA 58.188 29.630 0.00 0.00 36.82 3.85
4400 4878 9.372369 ACAAAAATTATCTGTTTTTCCACGAAA 57.628 25.926 0.00 0.00 36.82 3.46
4401 4879 9.631639 CAAAAATTATCTGTTTTTCCACGAAAC 57.368 29.630 0.00 0.00 36.82 2.78
4402 4880 8.934507 AAAATTATCTGTTTTTCCACGAAACA 57.065 26.923 0.00 0.00 42.78 2.83
4403 4881 8.934507 AAATTATCTGTTTTTCCACGAAACAA 57.065 26.923 4.29 0.00 43.89 2.83
4404 4882 7.924103 ATTATCTGTTTTTCCACGAAACAAC 57.076 32.000 4.29 3.58 43.89 3.32
4405 4883 5.576447 ATCTGTTTTTCCACGAAACAACT 57.424 34.783 4.29 0.00 43.89 3.16
4406 4884 5.379732 TCTGTTTTTCCACGAAACAACTT 57.620 34.783 4.29 0.00 43.89 2.66
4407 4885 5.774630 TCTGTTTTTCCACGAAACAACTTT 58.225 33.333 4.29 0.00 43.89 2.66
4408 4886 5.631512 TCTGTTTTTCCACGAAACAACTTTG 59.368 36.000 4.29 0.00 43.89 2.77
4409 4887 5.290386 TGTTTTTCCACGAAACAACTTTGT 58.710 33.333 0.00 0.00 42.25 2.83
4410 4888 5.175856 TGTTTTTCCACGAAACAACTTTGTG 59.824 36.000 0.00 0.00 45.69 3.33
4421 4899 9.701098 ACGAAACAACTTTGTGAGTATATAGAA 57.299 29.630 0.00 0.00 41.31 2.10
4426 4904 9.302345 ACAACTTTGTGAGTATATAGAATGTCG 57.698 33.333 0.00 0.00 40.49 4.35
4427 4905 9.516314 CAACTTTGTGAGTATATAGAATGTCGA 57.484 33.333 0.00 0.00 37.72 4.20
4428 4906 9.737427 AACTTTGTGAGTATATAGAATGTCGAG 57.263 33.333 0.00 0.00 37.72 4.04
4429 4907 9.121658 ACTTTGTGAGTATATAGAATGTCGAGA 57.878 33.333 0.00 0.00 36.65 4.04
4431 4909 9.899226 TTTGTGAGTATATAGAATGTCGAGATG 57.101 33.333 0.00 0.00 0.00 2.90
4432 4910 8.622948 TGTGAGTATATAGAATGTCGAGATGT 57.377 34.615 0.00 0.00 0.00 3.06
4433 4911 9.720769 TGTGAGTATATAGAATGTCGAGATGTA 57.279 33.333 0.00 0.00 0.00 2.29
4434 4912 9.976255 GTGAGTATATAGAATGTCGAGATGTAC 57.024 37.037 0.00 0.00 0.00 2.90
4435 4913 8.870879 TGAGTATATAGAATGTCGAGATGTACG 58.129 37.037 0.00 0.00 0.00 3.67
4436 4914 7.686519 AGTATATAGAATGTCGAGATGTACGC 58.313 38.462 0.00 0.00 0.00 4.42
4437 4915 2.493713 AGAATGTCGAGATGTACGCC 57.506 50.000 0.00 0.00 0.00 5.68
4438 4916 1.067212 AGAATGTCGAGATGTACGCCC 59.933 52.381 0.00 0.00 0.00 6.13
4439 4917 0.821517 AATGTCGAGATGTACGCCCA 59.178 50.000 0.00 0.00 0.00 5.36
4440 4918 0.821517 ATGTCGAGATGTACGCCCAA 59.178 50.000 0.00 0.00 0.00 4.12
4441 4919 0.604073 TGTCGAGATGTACGCCCAAA 59.396 50.000 0.00 0.00 0.00 3.28
4442 4920 1.001068 TGTCGAGATGTACGCCCAAAA 59.999 47.619 0.00 0.00 0.00 2.44
4443 4921 1.392510 GTCGAGATGTACGCCCAAAAC 59.607 52.381 0.00 0.00 0.00 2.43
4444 4922 1.001068 TCGAGATGTACGCCCAAAACA 59.999 47.619 0.00 0.00 0.00 2.83
4445 4923 2.006888 CGAGATGTACGCCCAAAACAT 58.993 47.619 0.00 0.00 36.57 2.71
4446 4924 2.418628 CGAGATGTACGCCCAAAACATT 59.581 45.455 0.00 0.00 34.09 2.71
4447 4925 3.119990 CGAGATGTACGCCCAAAACATTT 60.120 43.478 0.00 0.00 34.09 2.32
4448 4926 4.614993 CGAGATGTACGCCCAAAACATTTT 60.615 41.667 0.00 0.00 34.09 1.82
4449 4927 4.555262 AGATGTACGCCCAAAACATTTTG 58.445 39.130 9.66 9.66 45.34 2.44
4450 4928 2.474816 TGTACGCCCAAAACATTTTGC 58.525 42.857 10.93 1.33 44.62 3.68
4451 4929 1.795872 GTACGCCCAAAACATTTTGCC 59.204 47.619 10.93 4.38 44.62 4.52
4452 4930 0.179000 ACGCCCAAAACATTTTGCCA 59.821 45.000 10.93 0.00 44.62 4.92
4453 4931 1.303309 CGCCCAAAACATTTTGCCAA 58.697 45.000 10.93 0.00 44.62 4.52
4454 4932 1.672881 CGCCCAAAACATTTTGCCAAA 59.327 42.857 10.93 0.00 44.62 3.28
4455 4933 2.098117 CGCCCAAAACATTTTGCCAAAA 59.902 40.909 4.87 4.87 44.62 2.44
4456 4934 3.243334 CGCCCAAAACATTTTGCCAAAAT 60.243 39.130 9.57 9.57 44.62 1.82
4457 4935 4.691175 GCCCAAAACATTTTGCCAAAATT 58.309 34.783 12.58 0.00 44.62 1.82
4458 4936 5.114780 GCCCAAAACATTTTGCCAAAATTT 58.885 33.333 12.58 4.22 44.62 1.82
4459 4937 5.583854 GCCCAAAACATTTTGCCAAAATTTT 59.416 32.000 12.58 10.19 44.62 1.82
4460 4938 6.456584 GCCCAAAACATTTTGCCAAAATTTTG 60.457 34.615 22.80 22.80 44.62 2.44
4461 4939 6.592994 CCCAAAACATTTTGCCAAAATTTTGT 59.407 30.769 25.19 16.33 44.62 2.83
4462 4940 7.412672 CCCAAAACATTTTGCCAAAATTTTGTG 60.413 33.333 25.19 22.25 44.62 3.33
4463 4941 7.330208 CCAAAACATTTTGCCAAAATTTTGTGA 59.670 29.630 23.93 11.51 44.62 3.58
4464 4942 7.809226 AAACATTTTGCCAAAATTTTGTGAC 57.191 28.000 25.25 16.27 38.97 3.67
4465 4943 6.506500 ACATTTTGCCAAAATTTTGTGACA 57.493 29.167 25.25 18.25 38.97 3.58
4466 4944 7.098074 ACATTTTGCCAAAATTTTGTGACAT 57.902 28.000 25.25 10.75 38.97 3.06
4467 4945 7.545489 ACATTTTGCCAAAATTTTGTGACATT 58.455 26.923 25.25 7.30 38.97 2.71
4468 4946 8.033626 ACATTTTGCCAAAATTTTGTGACATTT 58.966 25.926 25.25 6.03 38.97 2.32
4469 4947 8.870879 CATTTTGCCAAAATTTTGTGACATTTT 58.129 25.926 25.25 8.67 38.97 1.82
4471 4949 9.912634 TTTTGCCAAAATTTTGTGACATTTTAA 57.087 22.222 25.25 11.33 36.45 1.52
4472 4950 9.912634 TTTGCCAAAATTTTGTGACATTTTAAA 57.087 22.222 25.25 11.05 36.45 1.52
4473 4951 9.912634 TTGCCAAAATTTTGTGACATTTTAAAA 57.087 22.222 25.25 2.51 36.45 1.52
4522 5000 3.239861 GCATATGCTCCTAGGTGCC 57.760 57.895 28.34 12.25 38.21 5.01
4523 5001 0.397941 GCATATGCTCCTAGGTGCCA 59.602 55.000 28.34 18.51 38.21 4.92
4524 5002 1.202806 GCATATGCTCCTAGGTGCCAA 60.203 52.381 28.34 18.47 38.21 4.52
4525 5003 2.749466 GCATATGCTCCTAGGTGCCAAA 60.749 50.000 28.34 16.27 38.21 3.28
4526 5004 3.554934 CATATGCTCCTAGGTGCCAAAA 58.445 45.455 28.34 13.58 34.16 2.44
4527 5005 1.839424 ATGCTCCTAGGTGCCAAAAC 58.161 50.000 28.34 5.33 34.16 2.43
4528 5006 0.605319 TGCTCCTAGGTGCCAAAACG 60.605 55.000 28.34 1.54 34.16 3.60
4529 5007 1.923227 GCTCCTAGGTGCCAAAACGC 61.923 60.000 22.72 3.46 0.00 4.84
4530 5008 1.302993 TCCTAGGTGCCAAAACGCC 60.303 57.895 9.08 0.00 40.71 5.68
4531 5009 2.686816 CCTAGGTGCCAAAACGCCG 61.687 63.158 0.00 0.00 45.23 6.46
4532 5010 3.322706 CTAGGTGCCAAAACGCCGC 62.323 63.158 0.00 0.00 45.23 6.53
4533 5011 3.835790 TAGGTGCCAAAACGCCGCT 62.836 57.895 0.00 0.00 45.23 5.52
4534 5012 4.700365 GGTGCCAAAACGCCGCTC 62.700 66.667 0.00 0.00 0.00 5.03
4535 5013 3.660111 GTGCCAAAACGCCGCTCT 61.660 61.111 0.00 0.00 0.00 4.09
4536 5014 3.353836 TGCCAAAACGCCGCTCTC 61.354 61.111 0.00 0.00 0.00 3.20
4537 5015 4.103103 GCCAAAACGCCGCTCTCC 62.103 66.667 0.00 0.00 0.00 3.71
4538 5016 2.668212 CCAAAACGCCGCTCTCCA 60.668 61.111 0.00 0.00 0.00 3.86
4539 5017 2.040544 CCAAAACGCCGCTCTCCAT 61.041 57.895 0.00 0.00 0.00 3.41
4540 5018 1.586154 CCAAAACGCCGCTCTCCATT 61.586 55.000 0.00 0.00 0.00 3.16
4550 5028 4.507710 GCCGCTCTCCATTTCATATGATA 58.492 43.478 6.17 1.78 0.00 2.15
4685 5163 6.861055 TGGTTCGAATAACAAAATTCAGCTTC 59.139 34.615 0.00 0.00 35.93 3.86
4686 5164 7.084486 GGTTCGAATAACAAAATTCAGCTTCT 58.916 34.615 0.00 0.00 35.93 2.85
4687 5165 7.061094 GGTTCGAATAACAAAATTCAGCTTCTG 59.939 37.037 0.00 0.00 35.93 3.02
4688 5166 6.086222 TCGAATAACAAAATTCAGCTTCTGC 58.914 36.000 0.00 0.00 35.93 4.26
4691 5169 7.062605 CGAATAACAAAATTCAGCTTCTGCATT 59.937 33.333 0.00 0.00 35.93 3.56
4736 5309 2.423538 GTGTCATTCTAAGCCGCCAAAT 59.576 45.455 0.00 0.00 0.00 2.32
4852 5881 7.123397 TCTCCATATAGAGATATCAAAGCGCTT 59.877 37.037 18.98 18.98 37.98 4.68
4854 5883 8.097038 TCCATATAGAGATATCAAAGCGCTTTT 58.903 33.333 31.88 21.12 0.00 2.27
4927 5962 1.000955 CGCTACAACCCTCAACTCAGT 59.999 52.381 0.00 0.00 0.00 3.41
4958 6015 9.908152 CTCGACCAAATCACATATAGTTATGTA 57.092 33.333 0.00 0.00 45.27 2.29
4967 6024 8.637281 TCACATATAGTTATGTACACCAAACG 57.363 34.615 0.00 0.00 45.27 3.60
4983 6040 2.095978 AACGCGCTACAACCCTCACT 62.096 55.000 5.73 0.00 0.00 3.41
4985 6042 1.805945 GCGCTACAACCCTCACTCG 60.806 63.158 0.00 0.00 0.00 4.18
4990 6047 0.834687 TACAACCCTCACTCGGCCTT 60.835 55.000 0.00 0.00 0.00 4.35
5008 6065 0.317160 TTGCTCGACCAGATCAACGT 59.683 50.000 0.00 0.00 30.85 3.99
5028 6085 0.036732 AGAAGCAGGCAATGGACGAA 59.963 50.000 0.00 0.00 0.00 3.85
5051 6108 1.388547 TGGCGTGAAAAGTTTGAGCT 58.611 45.000 0.00 0.00 0.00 4.09
5053 6110 3.146066 TGGCGTGAAAAGTTTGAGCTAT 58.854 40.909 0.00 0.00 0.00 2.97
5062 6119 6.658816 TGAAAAGTTTGAGCTATGATGCCTTA 59.341 34.615 0.00 0.00 0.00 2.69
5081 6138 5.679638 GCCTTATGACATTGTAAGCTTTGGG 60.680 44.000 3.20 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.433680 AGAAAAAGAAAACGCACCAGATTAAT 58.566 30.769 0.00 0.00 0.00 1.40
20 21 5.262588 AGAAAAAGAAAACGCACCAGATT 57.737 34.783 0.00 0.00 0.00 2.40
24 25 5.508200 ACATAGAAAAAGAAAACGCACCA 57.492 34.783 0.00 0.00 0.00 4.17
40 41 6.715280 AGAAGAGCAAATGAGGAAACATAGA 58.285 36.000 0.00 0.00 0.00 1.98
139 141 5.870978 AGTGATGCTGCATTTAATTGGTTTC 59.129 36.000 17.36 0.47 0.00 2.78
175 177 2.493278 CCCCAATGCACTGTCTTTTAGG 59.507 50.000 0.00 0.00 0.00 2.69
180 182 0.478072 TCACCCCAATGCACTGTCTT 59.522 50.000 0.00 0.00 0.00 3.01
186 188 1.474077 GAGACAATCACCCCAATGCAC 59.526 52.381 0.00 0.00 0.00 4.57
261 263 6.765915 AACTTCAAGTGAGCTTCTTCTTTT 57.234 33.333 0.00 0.00 31.49 2.27
360 362 6.070424 GCCTAGCCAACTGGGTACATTATATA 60.070 42.308 3.51 0.00 46.11 0.86
374 397 1.078848 CTTGCGAGCCTAGCCAACT 60.079 57.895 0.00 0.00 0.00 3.16
408 431 1.201429 ACTGAGGATTCAAGCCCGGT 61.201 55.000 0.00 0.00 31.69 5.28
416 439 0.247460 CACGAGCCACTGAGGATTCA 59.753 55.000 0.00 0.00 41.22 2.57
419 442 1.610673 ACCACGAGCCACTGAGGAT 60.611 57.895 0.00 0.00 41.22 3.24
424 447 1.446792 CTAGCACCACGAGCCACTG 60.447 63.158 0.00 0.00 0.00 3.66
521 581 4.630069 GGTTCTAGCTTAGCAAATCAACGA 59.370 41.667 7.07 0.00 0.00 3.85
522 582 4.631813 AGGTTCTAGCTTAGCAAATCAACG 59.368 41.667 7.07 0.00 0.00 4.10
535 595 9.160412 AGGATTAACATATGTTAGGTTCTAGCT 57.840 33.333 23.65 13.54 41.03 3.32
566 627 8.788325 ATCTAAACATACGCTAGGTTCTTTTT 57.212 30.769 0.00 0.00 30.57 1.94
624 686 5.152623 CTGTTGACAGAGATGGGTCTAAA 57.847 43.478 5.19 0.00 46.59 1.85
654 716 9.869757 CAAGGGTTTCTTCTTCTTTTTCTTTTA 57.130 29.630 0.00 0.00 32.41 1.52
659 721 5.520288 GTGCAAGGGTTTCTTCTTCTTTTTC 59.480 40.000 0.00 0.00 32.41 2.29
713 783 2.186160 CGGCTCAGCACAACACCAA 61.186 57.895 0.00 0.00 0.00 3.67
791 861 4.623167 ACAATCAAATGAGAGAACTCGTCG 59.377 41.667 0.00 0.00 45.25 5.12
921 991 1.885163 TTCGCGGGGAAAGAGAGACC 61.885 60.000 6.13 0.00 0.00 3.85
964 1034 3.631127 GCGAGAAGCCGCGGAATC 61.631 66.667 33.48 25.15 45.86 2.52
1043 1119 4.817517 AGAATCAACGATTAACACGAGGT 58.182 39.130 10.17 0.00 31.89 3.85
1045 1121 6.009474 CACAAGAATCAACGATTAACACGAG 58.991 40.000 10.17 0.00 31.89 4.18
1068 1144 2.294170 TTACGCCCCCAAAACCACCA 62.294 55.000 0.00 0.00 0.00 4.17
1112 1188 3.304458 GCTAACAGAAAACAAGAACCCCG 60.304 47.826 0.00 0.00 0.00 5.73
1153 1229 6.325919 TGACACAACAATTCAGTAAATCCC 57.674 37.500 0.00 0.00 0.00 3.85
1308 1384 7.031975 GCTCAATTCCACAAAAGATCTAAAGG 58.968 38.462 0.00 0.00 0.00 3.11
1321 1397 4.022935 GTCAACAAGATGCTCAATTCCACA 60.023 41.667 0.00 0.00 0.00 4.17
1371 1447 2.050477 AAATTTAGCAGTGCACACGC 57.950 45.000 21.04 20.57 36.20 5.34
1375 1451 4.209080 GGTGAACAAAATTTAGCAGTGCAC 59.791 41.667 19.20 9.40 37.89 4.57
1451 1527 3.619038 CCTCCACGCAGAAAATAAGAGAC 59.381 47.826 0.00 0.00 0.00 3.36
1507 1584 3.557595 CGAACTATCTGGAATCAAGGCAC 59.442 47.826 0.00 0.00 0.00 5.01
1688 1767 4.221703 CCTAGCTCAATATCGACATTCCCT 59.778 45.833 0.00 0.00 0.00 4.20
1828 1907 5.999205 AGAAAACCATGCCACATGAATTA 57.001 34.783 9.10 0.00 0.00 1.40
1900 1979 4.814234 TGTCAACGTCTCAAGCAACTTATT 59.186 37.500 0.00 0.00 0.00 1.40
2175 2256 5.954153 TGGGGGACAGATAACGTTATTTA 57.046 39.130 21.18 0.00 0.00 1.40
2188 2269 2.668144 TAAACTGGTTTGGGGGACAG 57.332 50.000 8.73 0.00 37.01 3.51
2279 2360 2.632996 AGTGACAACCTTCGATTCCTCA 59.367 45.455 0.00 0.00 0.00 3.86
2350 2431 2.167075 GGGAAATCATGTTTGCCCTCTG 59.833 50.000 21.53 0.00 34.33 3.35
2406 2487 2.544069 GGAACAAATCGTCCCGCAAAAA 60.544 45.455 0.00 0.00 0.00 1.94
2407 2488 1.001158 GGAACAAATCGTCCCGCAAAA 60.001 47.619 0.00 0.00 0.00 2.44
2408 2489 0.594110 GGAACAAATCGTCCCGCAAA 59.406 50.000 0.00 0.00 0.00 3.68
2409 2490 0.250553 AGGAACAAATCGTCCCGCAA 60.251 50.000 0.00 0.00 0.00 4.85
2410 2491 0.250553 AAGGAACAAATCGTCCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
2411 2492 0.879090 AAAGGAACAAATCGTCCCGC 59.121 50.000 0.00 0.00 0.00 6.13
2412 2493 3.636282 AAAAAGGAACAAATCGTCCCG 57.364 42.857 0.00 0.00 0.00 5.14
2413 2494 6.262193 TCATAAAAAGGAACAAATCGTCCC 57.738 37.500 0.00 0.00 0.00 4.46
2414 2495 8.647226 CAATTCATAAAAAGGAACAAATCGTCC 58.353 33.333 0.00 0.00 0.00 4.79
2415 2496 8.162245 GCAATTCATAAAAAGGAACAAATCGTC 58.838 33.333 0.00 0.00 0.00 4.20
2416 2497 7.655328 TGCAATTCATAAAAAGGAACAAATCGT 59.345 29.630 0.00 0.00 0.00 3.73
2417 2498 8.016497 TGCAATTCATAAAAAGGAACAAATCG 57.984 30.769 0.00 0.00 0.00 3.34
2418 2499 9.206870 TCTGCAATTCATAAAAAGGAACAAATC 57.793 29.630 0.00 0.00 0.00 2.17
2419 2500 9.729281 ATCTGCAATTCATAAAAAGGAACAAAT 57.271 25.926 0.00 0.00 0.00 2.32
2487 2568 1.001378 GATTTTGTGAGCCGTGCAACT 60.001 47.619 0.00 0.00 31.75 3.16
2711 2829 2.443255 ACACCTGATCCCTTGTGAAAGT 59.557 45.455 7.68 0.00 33.08 2.66
3368 3834 7.513968 GCTTAGTGATTGTGACTTGAAGTAAG 58.486 38.462 0.00 0.00 42.30 2.34
3379 3845 2.481276 CGGATCCGCTTAGTGATTGTGA 60.481 50.000 23.37 0.00 0.00 3.58
3395 3861 3.393800 AGCAACATACAGTATGCGGATC 58.606 45.455 18.99 5.83 42.53 3.36
3599 4066 2.564504 CTGGATCTCTTGGAGTGTGTCA 59.435 50.000 0.00 0.00 0.00 3.58
3924 4393 0.610174 CTGTAACCTGAGGCAGCAGA 59.390 55.000 0.00 0.00 38.14 4.26
3925 4394 0.392193 CCTGTAACCTGAGGCAGCAG 60.392 60.000 0.00 4.07 35.66 4.24
4115 4593 5.231265 TCGTATATTGTCCTAGCATAGCG 57.769 43.478 0.00 0.00 37.37 4.26
4142 4620 3.796504 GCCAAAGTGCATTTCCGATATGG 60.797 47.826 0.00 0.00 40.09 2.74
4143 4621 3.181488 TGCCAAAGTGCATTTCCGATATG 60.181 43.478 0.00 0.00 36.04 1.78
4144 4622 3.023119 TGCCAAAGTGCATTTCCGATAT 58.977 40.909 0.00 0.00 36.04 1.63
4145 4623 2.163412 GTGCCAAAGTGCATTTCCGATA 59.837 45.455 0.00 0.00 44.30 2.92
4146 4624 1.067635 GTGCCAAAGTGCATTTCCGAT 60.068 47.619 0.00 0.00 44.30 4.18
4147 4625 0.313672 GTGCCAAAGTGCATTTCCGA 59.686 50.000 0.00 0.00 44.30 4.55
4148 4626 0.031857 TGTGCCAAAGTGCATTTCCG 59.968 50.000 0.00 0.00 44.30 4.30
4149 4627 2.070783 CATGTGCCAAAGTGCATTTCC 58.929 47.619 0.00 0.00 44.30 3.13
4150 4628 2.070783 CCATGTGCCAAAGTGCATTTC 58.929 47.619 0.00 0.00 44.30 2.17
4151 4629 1.270947 CCCATGTGCCAAAGTGCATTT 60.271 47.619 0.00 0.00 44.30 2.32
4152 4630 0.322322 CCCATGTGCCAAAGTGCATT 59.678 50.000 0.00 0.00 44.30 3.56
4153 4631 0.542467 TCCCATGTGCCAAAGTGCAT 60.542 50.000 0.00 0.00 44.30 3.96
4154 4632 1.152589 TCCCATGTGCCAAAGTGCA 60.153 52.632 0.00 0.00 39.37 4.57
4155 4633 1.588082 CTCCCATGTGCCAAAGTGC 59.412 57.895 0.00 0.00 0.00 4.40
4156 4634 1.180456 TGCTCCCATGTGCCAAAGTG 61.180 55.000 0.00 0.00 0.00 3.16
4157 4635 0.251922 ATGCTCCCATGTGCCAAAGT 60.252 50.000 0.00 0.00 0.00 2.66
4158 4636 0.174845 CATGCTCCCATGTGCCAAAG 59.825 55.000 0.00 0.00 43.07 2.77
4159 4637 2.278849 CATGCTCCCATGTGCCAAA 58.721 52.632 0.00 0.00 43.07 3.28
4160 4638 4.021559 CATGCTCCCATGTGCCAA 57.978 55.556 0.00 0.00 43.07 4.52
4173 4651 1.683943 TTCCAATAGCAGGAGCATGC 58.316 50.000 10.51 10.51 46.88 4.06
4174 4652 4.724074 TTTTTCCAATAGCAGGAGCATG 57.276 40.909 0.00 0.00 45.49 4.06
4175 4653 7.607615 AATATTTTTCCAATAGCAGGAGCAT 57.392 32.000 0.00 0.00 45.49 3.79
4176 4654 7.123997 TGAAATATTTTTCCAATAGCAGGAGCA 59.876 33.333 1.43 0.00 41.01 4.26
4177 4655 7.491682 TGAAATATTTTTCCAATAGCAGGAGC 58.508 34.615 1.43 0.00 40.49 4.70
4178 4656 9.874205 TTTGAAATATTTTTCCAATAGCAGGAG 57.126 29.630 1.43 0.00 40.49 3.69
4218 4696 9.790389 AGATGTACACGTTAAATTTTTGTTTGA 57.210 25.926 0.00 0.00 0.00 2.69
4221 4699 9.790389 TGAAGATGTACACGTTAAATTTTTGTT 57.210 25.926 0.00 0.00 0.00 2.83
4222 4700 9.959749 ATGAAGATGTACACGTTAAATTTTTGT 57.040 25.926 0.00 0.00 0.00 2.83
4231 4709 9.406828 GCATAGAATATGAAGATGTACACGTTA 57.593 33.333 0.00 0.00 0.00 3.18
4232 4710 7.926018 TGCATAGAATATGAAGATGTACACGTT 59.074 33.333 0.00 0.00 0.00 3.99
4233 4711 7.433680 TGCATAGAATATGAAGATGTACACGT 58.566 34.615 0.00 0.00 0.00 4.49
4234 4712 7.062722 CCTGCATAGAATATGAAGATGTACACG 59.937 40.741 0.00 0.00 0.00 4.49
4235 4713 7.148507 GCCTGCATAGAATATGAAGATGTACAC 60.149 40.741 0.00 0.00 0.00 2.90
4236 4714 6.875726 GCCTGCATAGAATATGAAGATGTACA 59.124 38.462 0.00 0.00 0.00 2.90
4237 4715 6.875726 TGCCTGCATAGAATATGAAGATGTAC 59.124 38.462 6.38 0.00 0.00 2.90
4238 4716 6.875726 GTGCCTGCATAGAATATGAAGATGTA 59.124 38.462 6.38 0.00 0.00 2.29
4239 4717 5.704515 GTGCCTGCATAGAATATGAAGATGT 59.295 40.000 6.38 0.00 0.00 3.06
4240 4718 5.163884 CGTGCCTGCATAGAATATGAAGATG 60.164 44.000 6.38 0.00 0.00 2.90
4241 4719 4.934001 CGTGCCTGCATAGAATATGAAGAT 59.066 41.667 6.38 0.00 0.00 2.40
4242 4720 4.309933 CGTGCCTGCATAGAATATGAAGA 58.690 43.478 6.38 0.00 0.00 2.87
4243 4721 3.120408 GCGTGCCTGCATAGAATATGAAG 60.120 47.826 0.00 0.00 34.15 3.02
4244 4722 2.807967 GCGTGCCTGCATAGAATATGAA 59.192 45.455 0.00 0.00 34.15 2.57
4245 4723 2.416747 GCGTGCCTGCATAGAATATGA 58.583 47.619 0.00 0.00 34.15 2.15
4246 4724 1.466167 GGCGTGCCTGCATAGAATATG 59.534 52.381 2.98 0.00 36.28 1.78
4247 4725 1.072173 TGGCGTGCCTGCATAGAATAT 59.928 47.619 12.84 0.00 36.94 1.28
4248 4726 0.467804 TGGCGTGCCTGCATAGAATA 59.532 50.000 12.84 0.00 36.94 1.75
4249 4727 0.394216 TTGGCGTGCCTGCATAGAAT 60.394 50.000 12.84 0.00 36.94 2.40
4250 4728 1.002746 TTGGCGTGCCTGCATAGAA 60.003 52.632 12.84 0.00 36.94 2.10
4251 4729 1.450134 CTTGGCGTGCCTGCATAGA 60.450 57.895 12.84 0.00 36.94 1.98
4252 4730 1.308069 AACTTGGCGTGCCTGCATAG 61.308 55.000 12.84 4.56 36.94 2.23
4253 4731 0.893270 AAACTTGGCGTGCCTGCATA 60.893 50.000 12.84 0.00 36.94 3.14
4254 4732 2.146073 GAAACTTGGCGTGCCTGCAT 62.146 55.000 12.84 0.00 36.94 3.96
4255 4733 2.832661 AAACTTGGCGTGCCTGCA 60.833 55.556 12.84 0.00 36.94 4.41
4256 4734 2.050077 GAAACTTGGCGTGCCTGC 60.050 61.111 12.84 0.00 36.94 4.85
4257 4735 1.008538 GTGAAACTTGGCGTGCCTG 60.009 57.895 12.84 7.60 36.94 4.85
4258 4736 0.823356 ATGTGAAACTTGGCGTGCCT 60.823 50.000 12.84 0.00 38.04 4.75
4259 4737 0.878416 TATGTGAAACTTGGCGTGCC 59.122 50.000 3.30 3.30 38.04 5.01
4260 4738 2.697431 TTATGTGAAACTTGGCGTGC 57.303 45.000 0.00 0.00 38.04 5.34
4261 4739 3.733727 GGTTTTATGTGAAACTTGGCGTG 59.266 43.478 1.29 0.00 39.05 5.34
4262 4740 3.381908 TGGTTTTATGTGAAACTTGGCGT 59.618 39.130 1.29 0.00 39.05 5.68
4263 4741 3.971150 TGGTTTTATGTGAAACTTGGCG 58.029 40.909 1.29 0.00 39.05 5.69
4264 4742 3.740832 GCTGGTTTTATGTGAAACTTGGC 59.259 43.478 1.29 0.93 39.05 4.52
4265 4743 4.942852 TGCTGGTTTTATGTGAAACTTGG 58.057 39.130 1.29 0.00 39.05 3.61
4266 4744 7.481275 AAATGCTGGTTTTATGTGAAACTTG 57.519 32.000 1.29 0.00 39.05 3.16
4267 4745 8.504812 AAAAATGCTGGTTTTATGTGAAACTT 57.495 26.923 1.29 0.00 39.05 2.66
4316 4794 6.731292 AAGGGCTTTTCACTAGACATTTTT 57.269 33.333 0.00 0.00 0.00 1.94
4317 4795 6.515832 CAAAGGGCTTTTCACTAGACATTTT 58.484 36.000 0.00 0.00 32.72 1.82
4318 4796 5.509670 GCAAAGGGCTTTTCACTAGACATTT 60.510 40.000 0.00 0.00 35.18 2.32
4319 4797 4.021981 GCAAAGGGCTTTTCACTAGACATT 60.022 41.667 0.00 0.00 40.25 2.71
4320 4798 3.507622 GCAAAGGGCTTTTCACTAGACAT 59.492 43.478 0.00 0.00 40.25 3.06
4321 4799 2.884639 GCAAAGGGCTTTTCACTAGACA 59.115 45.455 0.00 0.00 40.25 3.41
4322 4800 2.884639 TGCAAAGGGCTTTTCACTAGAC 59.115 45.455 0.00 0.00 45.15 2.59
4323 4801 3.222173 TGCAAAGGGCTTTTCACTAGA 57.778 42.857 0.00 0.00 45.15 2.43
4324 4802 3.068024 TGTTGCAAAGGGCTTTTCACTAG 59.932 43.478 0.00 0.00 45.15 2.57
4325 4803 3.027412 TGTTGCAAAGGGCTTTTCACTA 58.973 40.909 0.00 0.00 45.15 2.74
4326 4804 1.830477 TGTTGCAAAGGGCTTTTCACT 59.170 42.857 0.00 0.00 45.15 3.41
4327 4805 1.933181 GTGTTGCAAAGGGCTTTTCAC 59.067 47.619 0.00 0.00 45.15 3.18
4328 4806 1.134551 GGTGTTGCAAAGGGCTTTTCA 60.135 47.619 0.00 0.00 45.15 2.69
4329 4807 1.134551 TGGTGTTGCAAAGGGCTTTTC 60.135 47.619 0.00 0.00 45.15 2.29
4330 4808 0.908198 TGGTGTTGCAAAGGGCTTTT 59.092 45.000 0.00 0.00 45.15 2.27
4331 4809 0.908198 TTGGTGTTGCAAAGGGCTTT 59.092 45.000 0.00 0.00 45.15 3.51
4332 4810 0.908198 TTTGGTGTTGCAAAGGGCTT 59.092 45.000 0.00 0.00 45.15 4.35
4333 4811 1.130777 ATTTGGTGTTGCAAAGGGCT 58.869 45.000 0.00 0.00 45.15 5.19
4334 4812 1.965935 AATTTGGTGTTGCAAAGGGC 58.034 45.000 0.00 0.00 45.13 5.19
4335 4813 5.997129 AGATAAAATTTGGTGTTGCAAAGGG 59.003 36.000 0.00 0.00 0.00 3.95
4336 4814 7.495135 AAGATAAAATTTGGTGTTGCAAAGG 57.505 32.000 0.00 0.00 0.00 3.11
4337 4815 9.786105 AAAAAGATAAAATTTGGTGTTGCAAAG 57.214 25.926 0.00 0.00 0.00 2.77
4338 4816 9.780413 GAAAAAGATAAAATTTGGTGTTGCAAA 57.220 25.926 0.00 0.00 0.00 3.68
4339 4817 8.950210 TGAAAAAGATAAAATTTGGTGTTGCAA 58.050 25.926 0.00 0.00 0.00 4.08
4340 4818 8.394121 GTGAAAAAGATAAAATTTGGTGTTGCA 58.606 29.630 0.00 0.00 0.00 4.08
4341 4819 8.394121 TGTGAAAAAGATAAAATTTGGTGTTGC 58.606 29.630 0.00 0.00 0.00 4.17
4342 4820 9.701355 GTGTGAAAAAGATAAAATTTGGTGTTG 57.299 29.630 0.00 0.00 0.00 3.33
4343 4821 8.599774 CGTGTGAAAAAGATAAAATTTGGTGTT 58.400 29.630 0.00 0.00 0.00 3.32
4344 4822 7.254286 GCGTGTGAAAAAGATAAAATTTGGTGT 60.254 33.333 0.00 0.00 0.00 4.16
4345 4823 7.062848 GCGTGTGAAAAAGATAAAATTTGGTG 58.937 34.615 0.00 0.00 0.00 4.17
4346 4824 6.758886 TGCGTGTGAAAAAGATAAAATTTGGT 59.241 30.769 0.00 0.00 0.00 3.67
4347 4825 7.171447 TGCGTGTGAAAAAGATAAAATTTGG 57.829 32.000 0.00 0.00 0.00 3.28
4348 4826 8.113062 TGTTGCGTGTGAAAAAGATAAAATTTG 58.887 29.630 0.00 0.00 0.00 2.32
4349 4827 8.113675 GTGTTGCGTGTGAAAAAGATAAAATTT 58.886 29.630 0.00 0.00 0.00 1.82
4350 4828 7.276658 TGTGTTGCGTGTGAAAAAGATAAAATT 59.723 29.630 0.00 0.00 0.00 1.82
4351 4829 6.754209 TGTGTTGCGTGTGAAAAAGATAAAAT 59.246 30.769 0.00 0.00 0.00 1.82
4352 4830 6.093404 TGTGTTGCGTGTGAAAAAGATAAAA 58.907 32.000 0.00 0.00 0.00 1.52
4353 4831 5.641709 TGTGTTGCGTGTGAAAAAGATAAA 58.358 33.333 0.00 0.00 0.00 1.40
4354 4832 5.236655 TGTGTTGCGTGTGAAAAAGATAA 57.763 34.783 0.00 0.00 0.00 1.75
4355 4833 4.884458 TGTGTTGCGTGTGAAAAAGATA 57.116 36.364 0.00 0.00 0.00 1.98
4356 4834 3.773860 TGTGTTGCGTGTGAAAAAGAT 57.226 38.095 0.00 0.00 0.00 2.40
4357 4835 3.560902 TTGTGTTGCGTGTGAAAAAGA 57.439 38.095 0.00 0.00 0.00 2.52
4358 4836 4.637574 TTTTGTGTTGCGTGTGAAAAAG 57.362 36.364 0.00 0.00 0.00 2.27
4359 4837 5.597813 ATTTTTGTGTTGCGTGTGAAAAA 57.402 30.435 0.00 0.00 0.00 1.94
4360 4838 5.597813 AATTTTTGTGTTGCGTGTGAAAA 57.402 30.435 0.00 0.00 0.00 2.29
4361 4839 6.754209 AGATAATTTTTGTGTTGCGTGTGAAA 59.246 30.769 0.00 0.00 0.00 2.69
4362 4840 6.198029 CAGATAATTTTTGTGTTGCGTGTGAA 59.802 34.615 0.00 0.00 0.00 3.18
4363 4841 5.685068 CAGATAATTTTTGTGTTGCGTGTGA 59.315 36.000 0.00 0.00 0.00 3.58
4364 4842 5.458452 ACAGATAATTTTTGTGTTGCGTGTG 59.542 36.000 0.00 0.00 0.00 3.82
4365 4843 5.587289 ACAGATAATTTTTGTGTTGCGTGT 58.413 33.333 0.00 0.00 0.00 4.49
4366 4844 6.509317 AACAGATAATTTTTGTGTTGCGTG 57.491 33.333 2.38 0.00 30.25 5.34
4367 4845 7.532682 AAAACAGATAATTTTTGTGTTGCGT 57.467 28.000 3.74 0.00 31.80 5.24
4368 4846 7.582319 GGAAAAACAGATAATTTTTGTGTTGCG 59.418 33.333 3.74 0.00 38.92 4.85
4369 4847 8.394121 TGGAAAAACAGATAATTTTTGTGTTGC 58.606 29.630 3.74 0.00 38.92 4.17
4370 4848 9.701355 GTGGAAAAACAGATAATTTTTGTGTTG 57.299 29.630 3.74 0.00 38.92 3.33
4371 4849 8.599774 CGTGGAAAAACAGATAATTTTTGTGTT 58.400 29.630 0.46 0.00 38.92 3.32
4372 4850 7.976734 TCGTGGAAAAACAGATAATTTTTGTGT 59.023 29.630 0.46 0.00 38.92 3.72
4373 4851 8.346476 TCGTGGAAAAACAGATAATTTTTGTG 57.654 30.769 0.46 0.00 38.92 3.33
4374 4852 8.934507 TTCGTGGAAAAACAGATAATTTTTGT 57.065 26.923 0.46 0.00 38.92 2.83
4375 4853 9.631639 GTTTCGTGGAAAAACAGATAATTTTTG 57.368 29.630 0.46 0.00 38.92 2.44
4376 4854 9.372369 TGTTTCGTGGAAAAACAGATAATTTTT 57.628 25.926 0.00 0.00 40.64 1.94
4377 4855 8.934507 TGTTTCGTGGAAAAACAGATAATTTT 57.065 26.923 0.00 0.00 40.64 1.82
4378 4856 8.813282 GTTGTTTCGTGGAAAAACAGATAATTT 58.187 29.630 2.19 0.00 44.75 1.82
4379 4857 8.194769 AGTTGTTTCGTGGAAAAACAGATAATT 58.805 29.630 13.38 0.00 44.75 1.40
4380 4858 7.712797 AGTTGTTTCGTGGAAAAACAGATAAT 58.287 30.769 13.38 0.00 44.75 1.28
4381 4859 7.090953 AGTTGTTTCGTGGAAAAACAGATAA 57.909 32.000 13.38 0.00 44.75 1.75
4382 4860 6.687081 AGTTGTTTCGTGGAAAAACAGATA 57.313 33.333 13.38 0.00 44.75 1.98
4383 4861 5.576447 AGTTGTTTCGTGGAAAAACAGAT 57.424 34.783 13.38 0.00 44.75 2.90
4384 4862 5.379732 AAGTTGTTTCGTGGAAAAACAGA 57.620 34.783 13.38 0.00 44.75 3.41
4385 4863 5.404066 ACAAAGTTGTTTCGTGGAAAAACAG 59.596 36.000 13.38 0.00 44.75 3.16
4386 4864 5.175856 CACAAAGTTGTTTCGTGGAAAAACA 59.824 36.000 0.00 0.00 43.03 2.83
4387 4865 5.402867 TCACAAAGTTGTTTCGTGGAAAAAC 59.597 36.000 0.00 0.00 39.91 2.43
4388 4866 5.529791 TCACAAAGTTGTTTCGTGGAAAAA 58.470 33.333 0.00 0.00 39.91 1.94
4389 4867 5.122512 TCACAAAGTTGTTTCGTGGAAAA 57.877 34.783 0.00 0.00 39.91 2.29
4390 4868 4.216687 ACTCACAAAGTTGTTTCGTGGAAA 59.783 37.500 0.00 0.00 39.91 3.13
4391 4869 3.754323 ACTCACAAAGTTGTTTCGTGGAA 59.246 39.130 0.00 0.00 39.91 3.53
4392 4870 3.340034 ACTCACAAAGTTGTTTCGTGGA 58.660 40.909 0.00 0.00 39.91 4.02
4393 4871 3.757745 ACTCACAAAGTTGTTTCGTGG 57.242 42.857 0.00 0.00 39.91 4.94
4394 4872 9.135843 TCTATATACTCACAAAGTTGTTTCGTG 57.864 33.333 0.00 0.00 39.91 4.35
4395 4873 9.701098 TTCTATATACTCACAAAGTTGTTTCGT 57.299 29.630 0.00 0.00 39.91 3.85
4400 4878 9.302345 CGACATTCTATATACTCACAAAGTTGT 57.698 33.333 0.00 0.00 43.36 3.32
4401 4879 9.516314 TCGACATTCTATATACTCACAAAGTTG 57.484 33.333 0.00 0.00 39.55 3.16
4402 4880 9.737427 CTCGACATTCTATATACTCACAAAGTT 57.263 33.333 0.00 0.00 39.55 2.66
4403 4881 9.121658 TCTCGACATTCTATATACTCACAAAGT 57.878 33.333 0.00 0.00 42.33 2.66
4405 4883 9.899226 CATCTCGACATTCTATATACTCACAAA 57.101 33.333 0.00 0.00 0.00 2.83
4406 4884 9.067986 ACATCTCGACATTCTATATACTCACAA 57.932 33.333 0.00 0.00 0.00 3.33
4407 4885 8.622948 ACATCTCGACATTCTATATACTCACA 57.377 34.615 0.00 0.00 0.00 3.58
4408 4886 9.976255 GTACATCTCGACATTCTATATACTCAC 57.024 37.037 0.00 0.00 0.00 3.51
4409 4887 8.870879 CGTACATCTCGACATTCTATATACTCA 58.129 37.037 0.00 0.00 0.00 3.41
4410 4888 7.847078 GCGTACATCTCGACATTCTATATACTC 59.153 40.741 0.00 0.00 0.00 2.59
4411 4889 7.201626 GGCGTACATCTCGACATTCTATATACT 60.202 40.741 0.00 0.00 36.24 2.12
4412 4890 6.906143 GGCGTACATCTCGACATTCTATATAC 59.094 42.308 0.00 0.00 36.24 1.47
4413 4891 6.037940 GGGCGTACATCTCGACATTCTATATA 59.962 42.308 0.00 0.00 38.15 0.86
4414 4892 5.163642 GGGCGTACATCTCGACATTCTATAT 60.164 44.000 0.00 0.00 38.15 0.86
4415 4893 4.155462 GGGCGTACATCTCGACATTCTATA 59.845 45.833 0.00 0.00 38.15 1.31
4416 4894 3.057456 GGGCGTACATCTCGACATTCTAT 60.057 47.826 0.00 0.00 38.15 1.98
4417 4895 2.292569 GGGCGTACATCTCGACATTCTA 59.707 50.000 0.00 0.00 38.15 2.10
4418 4896 1.067212 GGGCGTACATCTCGACATTCT 59.933 52.381 0.00 0.00 38.15 2.40
4419 4897 1.202371 TGGGCGTACATCTCGACATTC 60.202 52.381 0.00 0.00 38.15 2.67
4420 4898 0.821517 TGGGCGTACATCTCGACATT 59.178 50.000 0.00 0.00 38.15 2.71
4421 4899 0.821517 TTGGGCGTACATCTCGACAT 59.178 50.000 0.00 0.00 38.15 3.06
4422 4900 0.604073 TTTGGGCGTACATCTCGACA 59.396 50.000 0.00 0.00 38.15 4.35
4423 4901 1.392510 GTTTTGGGCGTACATCTCGAC 59.607 52.381 0.00 0.00 35.38 4.20
4424 4902 1.001068 TGTTTTGGGCGTACATCTCGA 59.999 47.619 0.00 0.00 0.00 4.04
4425 4903 1.434555 TGTTTTGGGCGTACATCTCG 58.565 50.000 0.00 0.00 0.00 4.04
4426 4904 4.434713 AAATGTTTTGGGCGTACATCTC 57.565 40.909 0.00 0.00 31.63 2.75
4427 4905 4.555262 CAAAATGTTTTGGGCGTACATCT 58.445 39.130 9.75 0.00 42.81 2.90
4428 4906 3.122780 GCAAAATGTTTTGGGCGTACATC 59.877 43.478 17.16 0.00 45.73 3.06
4429 4907 3.063485 GCAAAATGTTTTGGGCGTACAT 58.937 40.909 17.16 0.00 45.73 2.29
4430 4908 2.474816 GCAAAATGTTTTGGGCGTACA 58.525 42.857 17.16 0.00 45.73 2.90
4431 4909 1.795872 GGCAAAATGTTTTGGGCGTAC 59.204 47.619 17.16 2.68 45.73 3.67
4432 4910 1.412710 TGGCAAAATGTTTTGGGCGTA 59.587 42.857 17.16 0.00 45.73 4.42
4433 4911 0.179000 TGGCAAAATGTTTTGGGCGT 59.821 45.000 17.16 0.00 45.73 5.68
4434 4912 1.303309 TTGGCAAAATGTTTTGGGCG 58.697 45.000 17.16 0.00 45.73 6.13
4435 4913 3.790152 TTTTGGCAAAATGTTTTGGGC 57.210 38.095 20.81 11.59 45.73 5.36
4436 4914 6.592994 ACAAAATTTTGGCAAAATGTTTTGGG 59.407 30.769 36.82 27.86 42.63 4.12
4437 4915 7.330208 TCACAAAATTTTGGCAAAATGTTTTGG 59.670 29.630 36.82 30.56 42.63 3.28
4438 4916 8.160976 GTCACAAAATTTTGGCAAAATGTTTTG 58.839 29.630 35.00 35.00 43.71 2.44
4439 4917 7.869429 TGTCACAAAATTTTGGCAAAATGTTTT 59.131 25.926 32.24 26.61 40.05 2.43
4440 4918 7.373493 TGTCACAAAATTTTGGCAAAATGTTT 58.627 26.923 32.24 27.38 40.05 2.83
4441 4919 6.917533 TGTCACAAAATTTTGGCAAAATGTT 58.082 28.000 32.24 29.80 40.05 2.71
4442 4920 6.506500 TGTCACAAAATTTTGGCAAAATGT 57.493 29.167 32.24 26.42 40.05 2.71
4443 4921 7.988904 AATGTCACAAAATTTTGGCAAAATG 57.011 28.000 32.24 24.94 40.05 2.32
4444 4922 8.999220 AAAATGTCACAAAATTTTGGCAAAAT 57.001 23.077 27.84 27.84 42.62 1.82
4445 4923 9.912634 TTAAAATGTCACAAAATTTTGGCAAAA 57.087 22.222 29.37 25.94 42.34 2.44
4446 4924 9.912634 TTTAAAATGTCACAAAATTTTGGCAAA 57.087 22.222 29.37 8.93 42.34 3.68
4447 4925 9.912634 TTTTAAAATGTCACAAAATTTTGGCAA 57.087 22.222 29.37 15.36 42.34 4.52
4504 4982 0.397941 TGGCACCTAGGAGCATATGC 59.602 55.000 29.09 20.36 42.49 3.14
4505 4983 2.936919 TTGGCACCTAGGAGCATATG 57.063 50.000 29.09 11.53 33.44 1.78
4506 4984 3.555966 GTTTTGGCACCTAGGAGCATAT 58.444 45.455 29.09 0.00 33.44 1.78
4507 4985 2.679639 CGTTTTGGCACCTAGGAGCATA 60.680 50.000 29.09 16.54 33.44 3.14
4508 4986 1.839424 GTTTTGGCACCTAGGAGCAT 58.161 50.000 29.09 0.00 33.44 3.79
4509 4987 0.605319 CGTTTTGGCACCTAGGAGCA 60.605 55.000 29.09 14.71 33.44 4.26
4510 4988 1.923227 GCGTTTTGGCACCTAGGAGC 61.923 60.000 21.78 21.78 0.00 4.70
4511 4989 1.305930 GGCGTTTTGGCACCTAGGAG 61.306 60.000 17.98 9.24 44.08 3.69
4512 4990 1.302993 GGCGTTTTGGCACCTAGGA 60.303 57.895 17.98 0.00 44.08 2.94
4513 4991 2.686816 CGGCGTTTTGGCACCTAGG 61.687 63.158 7.41 7.41 45.16 3.02
4514 4992 2.867472 CGGCGTTTTGGCACCTAG 59.133 61.111 0.00 0.00 45.16 3.02
4515 4993 3.358707 GCGGCGTTTTGGCACCTA 61.359 61.111 9.37 0.00 45.16 3.08
4517 4995 4.700365 GAGCGGCGTTTTGGCACC 62.700 66.667 9.37 0.00 45.16 5.01
4518 4996 3.595108 GAGAGCGGCGTTTTGGCAC 62.595 63.158 9.37 0.00 45.16 5.01
4519 4997 3.353836 GAGAGCGGCGTTTTGGCA 61.354 61.111 9.37 0.00 45.16 4.92
4520 4998 4.103103 GGAGAGCGGCGTTTTGGC 62.103 66.667 9.37 0.00 40.44 4.52
4521 4999 1.586154 AATGGAGAGCGGCGTTTTGG 61.586 55.000 9.37 0.00 0.00 3.28
4522 5000 0.240945 AAATGGAGAGCGGCGTTTTG 59.759 50.000 9.37 0.00 0.00 2.44
4523 5001 0.521735 GAAATGGAGAGCGGCGTTTT 59.478 50.000 9.37 0.00 0.00 2.43
4524 5002 0.605319 TGAAATGGAGAGCGGCGTTT 60.605 50.000 9.37 0.00 0.00 3.60
4525 5003 0.392998 ATGAAATGGAGAGCGGCGTT 60.393 50.000 9.37 0.48 0.00 4.84
4526 5004 0.464036 TATGAAATGGAGAGCGGCGT 59.536 50.000 9.37 0.00 0.00 5.68
4527 5005 1.462283 CATATGAAATGGAGAGCGGCG 59.538 52.381 0.51 0.51 0.00 6.46
4528 5006 2.771089 TCATATGAAATGGAGAGCGGC 58.229 47.619 1.98 0.00 0.00 6.53
4529 5007 7.621428 AAATATCATATGAAATGGAGAGCGG 57.379 36.000 9.99 0.00 0.00 5.52
4685 5163 2.409975 CCACAAAAGGCAGAAATGCAG 58.590 47.619 2.29 0.00 36.33 4.41
4686 5164 2.529780 CCACAAAAGGCAGAAATGCA 57.470 45.000 2.29 0.00 36.33 3.96
4709 5212 3.766151 CGGCTTAGAATGACACTCGTTA 58.234 45.455 0.00 0.00 0.00 3.18
4712 5215 0.924090 GCGGCTTAGAATGACACTCG 59.076 55.000 0.00 0.00 0.00 4.18
4736 5309 4.207955 ACTACTCTATCGCAAGGTCATCA 58.792 43.478 0.00 0.00 38.47 3.07
4826 5855 6.605194 AGCGCTTTGATATCTCTATATGGAGA 59.395 38.462 19.75 19.75 44.96 3.71
4858 5887 7.642669 TGGAGTAATCTCTATTTAACCGTACG 58.357 38.462 8.69 8.69 40.29 3.67
4903 5938 1.070105 TTGAGGGTTGTAGCGCGTT 59.930 52.632 8.43 3.54 0.00 4.84
4958 6015 1.644913 GTTGTAGCGCGTTTGGTGT 59.355 52.632 8.43 0.00 0.00 4.16
4961 6018 1.908066 GAGGGTTGTAGCGCGTTTGG 61.908 60.000 8.43 0.00 0.00 3.28
4967 6024 1.805945 CGAGTGAGGGTTGTAGCGC 60.806 63.158 0.00 0.00 0.00 5.92
4983 6040 4.069232 CTGGTCGAGCAAGGCCGA 62.069 66.667 19.16 0.00 39.14 5.54
4985 6042 1.522580 GATCTGGTCGAGCAAGGCC 60.523 63.158 19.16 0.00 36.18 5.19
4990 6047 1.132453 CTACGTTGATCTGGTCGAGCA 59.868 52.381 17.59 17.59 35.99 4.26
5008 6065 0.901827 TCGTCCATTGCCTGCTTCTA 59.098 50.000 0.00 0.00 0.00 2.10
5028 6085 2.096248 TCAAACTTTTCACGCCAACCT 58.904 42.857 0.00 0.00 0.00 3.50
5051 6108 7.226441 AGCTTACAATGTCATAAGGCATCATA 58.774 34.615 0.00 0.00 0.00 2.15
5053 6110 5.439721 AGCTTACAATGTCATAAGGCATCA 58.560 37.500 0.00 0.00 0.00 3.07
5062 6119 4.022068 CACACCCAAAGCTTACAATGTCAT 60.022 41.667 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.