Multiple sequence alignment - TraesCS5A01G096500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G096500 chr5A 100.000 6070 0 0 1 6070 136387693 136393762 0.000000e+00 11210.0
1 TraesCS5A01G096500 chr5A 90.850 153 11 2 659 808 26117495 26117343 1.030000e-47 202.0
2 TraesCS5A01G096500 chr5D 97.233 4373 81 16 891 5243 123445890 123450242 0.000000e+00 7369.0
3 TraesCS5A01G096500 chr5D 89.147 645 57 5 1 633 123444300 123444943 0.000000e+00 791.0
4 TraesCS5A01G096500 chr5D 91.403 221 13 5 5855 6070 123451738 123451957 1.280000e-76 298.0
5 TraesCS5A01G096500 chr5D 95.238 168 7 1 5311 5477 42949560 42949727 1.300000e-66 265.0
6 TraesCS5A01G096500 chr5D 94.186 172 8 2 5305 5474 445106659 445106488 1.680000e-65 261.0
7 TraesCS5A01G096500 chr5D 95.588 68 2 1 5241 5308 123450489 123450555 2.310000e-19 108.0
8 TraesCS5A01G096500 chr5D 94.828 58 3 0 1 58 436552128 436552071 2.330000e-14 91.6
9 TraesCS5A01G096500 chr5B 97.448 1842 45 2 1884 3724 136405297 136407137 0.000000e+00 3140.0
10 TraesCS5A01G096500 chr5B 93.460 1422 76 11 3761 5171 136407134 136408549 0.000000e+00 2095.0
11 TraesCS5A01G096500 chr5B 91.037 569 26 8 879 1428 136403785 136404347 0.000000e+00 745.0
12 TraesCS5A01G096500 chr5B 92.573 377 21 4 1502 1871 136404808 136405184 8.960000e-148 534.0
13 TraesCS5A01G096500 chr5B 95.683 139 5 1 5932 6070 136410449 136410586 7.920000e-54 222.0
14 TraesCS5A01G096500 chr7D 87.032 401 44 8 5475 5875 418627544 418627152 4.320000e-121 446.0
15 TraesCS5A01G096500 chr7D 89.447 199 13 7 5281 5478 401145164 401145355 1.690000e-60 244.0
16 TraesCS5A01G096500 chr7D 90.260 154 11 3 659 808 464086609 464086456 1.330000e-46 198.0
17 TraesCS5A01G096500 chr7D 93.694 111 3 3 5920 6030 583594805 583594911 4.870000e-36 163.0
18 TraesCS5A01G096500 chr7D 95.098 102 3 2 5920 6021 634667227 634667326 6.300000e-35 159.0
19 TraesCS5A01G096500 chr7D 91.935 62 4 1 1 61 194475051 194474990 1.080000e-12 86.1
20 TraesCS5A01G096500 chr7D 91.525 59 4 1 1 58 425114111 425114169 5.040000e-11 80.5
21 TraesCS5A01G096500 chr4B 85.821 402 48 8 5475 5876 20300719 20300327 9.410000e-113 418.0
22 TraesCS5A01G096500 chr7A 85.572 402 49 7 5475 5876 731748152 731748544 4.380000e-111 412.0
23 TraesCS5A01G096500 chr7A 94.444 108 4 2 5919 6026 731240762 731240867 1.350000e-36 165.0
24 TraesCS5A01G096500 chr2D 84.826 402 50 6 5473 5874 617096762 617097152 1.590000e-105 394.0
25 TraesCS5A01G096500 chr2D 94.706 170 8 1 5309 5477 420278155 420278324 4.670000e-66 263.0
26 TraesCS5A01G096500 chr2D 91.848 184 10 4 5294 5475 180883370 180883190 1.010000e-62 252.0
27 TraesCS5A01G096500 chr2A 85.994 357 41 6 5473 5826 747258639 747258989 2.070000e-99 374.0
28 TraesCS5A01G096500 chr2A 86.607 336 38 7 5474 5807 208582187 208581857 1.240000e-96 364.0
29 TraesCS5A01G096500 chr2A 96.407 167 5 1 5310 5475 389221006 389221172 2.160000e-69 274.0
30 TraesCS5A01G096500 chr2A 92.254 142 10 1 663 803 768200697 768200838 3.710000e-47 200.0
31 TraesCS5A01G096500 chr1D 82.250 400 48 10 5475 5874 21910279 21909903 2.110000e-84 324.0
32 TraesCS5A01G096500 chr4A 86.505 289 33 6 5475 5763 101515936 101515654 4.570000e-81 313.0
33 TraesCS5A01G096500 chr4A 90.968 155 13 1 663 816 682754625 682754779 2.220000e-49 207.0
34 TraesCS5A01G096500 chr1A 84.127 315 44 6 5479 5791 582296775 582296465 3.560000e-77 300.0
35 TraesCS5A01G096500 chr1A 95.238 105 3 2 5924 6026 119739115 119739011 1.350000e-36 165.0
36 TraesCS5A01G096500 chr1A 91.525 59 4 1 1 58 112357263 112357321 5.040000e-11 80.5
37 TraesCS5A01G096500 chr7B 94.706 170 8 1 5310 5478 708478450 708478619 4.670000e-66 263.0
38 TraesCS5A01G096500 chr6A 94.675 169 8 1 5308 5475 458217877 458217709 1.680000e-65 261.0
39 TraesCS5A01G096500 chr6A 93.220 177 11 1 5300 5475 613889950 613890126 6.040000e-65 259.0
40 TraesCS5A01G096500 chr6A 94.444 108 4 2 5919 6026 146548616 146548511 1.350000e-36 165.0
41 TraesCS5A01G096500 chrUn 90.385 156 12 2 662 814 52139051 52138896 1.030000e-47 202.0
42 TraesCS5A01G096500 chr3B 91.275 149 10 2 663 808 807942664 807942516 3.710000e-47 200.0
43 TraesCS5A01G096500 chr3B 92.982 57 3 1 1 56 625196294 625196238 1.400000e-11 82.4
44 TraesCS5A01G096500 chr4D 90.728 151 10 3 662 808 447293813 447293663 1.330000e-46 198.0
45 TraesCS5A01G096500 chr3D 91.096 146 13 0 663 808 79666603 79666748 1.330000e-46 198.0
46 TraesCS5A01G096500 chr3D 91.096 146 11 2 660 803 529127157 529127302 4.800000e-46 196.0
47 TraesCS5A01G096500 chr1B 95.192 104 1 4 5926 6027 172256319 172256218 1.750000e-35 161.0
48 TraesCS5A01G096500 chr6D 96.774 93 1 2 5939 6030 470603308 470603217 2.930000e-33 154.0
49 TraesCS5A01G096500 chr3A 93.220 59 3 1 1 58 612978166 612978108 1.080000e-12 86.1
50 TraesCS5A01G096500 chr2B 92.982 57 4 0 1 57 118653331 118653275 3.900000e-12 84.2
51 TraesCS5A01G096500 chr2B 91.667 60 4 1 1 59 195085420 195085479 1.400000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G096500 chr5A 136387693 136393762 6069 False 11210.0 11210 100.00000 1 6070 1 chr5A.!!$F1 6069
1 TraesCS5A01G096500 chr5D 123444300 123451957 7657 False 2141.5 7369 93.34275 1 6070 4 chr5D.!!$F2 6069
2 TraesCS5A01G096500 chr5B 136403785 136410586 6801 False 1347.2 3140 94.04020 879 6070 5 chr5B.!!$F1 5191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.180642 TGGTCCGAGCGTCTAGATCT 59.819 55.000 0.00 0.00 32.02 2.75 F
345 349 0.331616 GCCACCCCTCACCTTACAAT 59.668 55.000 0.00 0.00 0.00 2.71 F
705 1636 0.609131 CTGGGCAGTTGGGGTTACTG 60.609 60.000 0.00 0.00 44.55 2.74 F
1048 1991 1.071385 GAACGAGGCATCCATCATCCT 59.929 52.381 0.00 0.00 0.00 3.24 F
1687 3036 1.977594 GCGATGATGAACCGCGGTTT 61.978 55.000 41.25 28.69 39.54 3.27 F
2698 4159 2.208431 GACTCCATGCTCCATTTCTCG 58.792 52.381 0.00 0.00 0.00 4.04 F
3713 5175 2.091610 TGCTCTAGACCCTGTGCTATCT 60.092 50.000 0.00 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 3209 0.242286 GGCACACACACACACACAAA 59.758 50.000 0.00 0.00 0.00 2.83 R
1914 3366 1.128692 GGTTCATCTTAGTGCACGTGC 59.871 52.381 33.11 33.11 42.50 5.34 R
2664 4125 2.687370 TGGAGTCATGAACATGTCACG 58.313 47.619 13.35 0.00 39.72 4.35 R
2816 4277 0.252012 ATCCACCGAATTTGGGGCAA 60.252 50.000 16.44 3.32 34.56 4.52 R
3339 4800 3.146066 CCAATGTCCTGAAGAAAACGGA 58.854 45.455 0.00 0.00 0.00 4.69 R
4186 5651 0.323178 CCCACATTCTGCAGCTTCCT 60.323 55.000 9.47 0.00 0.00 3.36 R
5305 8482 0.108281 GGAACCGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.267084 GTCATTAATTACCAAAACCAAACATGT 57.733 29.630 0.00 0.00 0.00 3.21
42 43 9.265901 CATTAATTACCAAAACCAAACATGTGA 57.734 29.630 0.00 0.00 0.00 3.58
58 59 2.497138 TGTGACACCATGCTCTTTCAG 58.503 47.619 2.45 0.00 0.00 3.02
68 69 1.962822 CTCTTTCAGCTGCACCGCA 60.963 57.895 9.47 0.00 36.92 5.69
69 70 1.302752 TCTTTCAGCTGCACCGCAT 60.303 52.632 9.47 0.00 38.13 4.73
136 137 0.180642 TGGTCCGAGCGTCTAGATCT 59.819 55.000 0.00 0.00 32.02 2.75
147 148 1.514003 TCTAGATCTAGACCGCGCAG 58.486 55.000 25.54 0.00 37.28 5.18
165 166 4.883354 CCATCGGCTCCCCAAGGC 62.883 72.222 0.00 0.00 46.88 4.35
187 188 1.228793 CCCTTCCACAACCACACCA 59.771 57.895 0.00 0.00 0.00 4.17
195 196 0.465460 ACAACCACACCAGCGTCAAT 60.465 50.000 0.00 0.00 0.00 2.57
252 253 4.690719 CGGCCACCGCAACACCTA 62.691 66.667 2.24 0.00 41.17 3.08
274 275 0.674581 TGAGATCCGCTGCAACCAAG 60.675 55.000 0.00 0.00 0.00 3.61
276 277 3.056313 GATCCGCTGCAACCAAGGC 62.056 63.158 0.00 0.00 0.00 4.35
280 281 3.741476 GCTGCAACCAAGGCCTCG 61.741 66.667 5.23 0.95 0.00 4.63
281 282 3.741476 CTGCAACCAAGGCCTCGC 61.741 66.667 5.23 4.81 0.00 5.03
345 349 0.331616 GCCACCCCTCACCTTACAAT 59.668 55.000 0.00 0.00 0.00 2.71
355 359 1.732259 CACCTTACAATCGTGCTCCAC 59.268 52.381 0.00 0.00 0.00 4.02
383 387 4.206958 GCTCCACGACATGCATCA 57.793 55.556 0.00 0.00 0.00 3.07
395 399 1.552799 ATGCATCACCACACCGGAGA 61.553 55.000 9.46 0.00 38.88 3.71
482 486 4.360643 GCCCATGGCCTTTGATGA 57.639 55.556 6.09 0.00 44.06 2.92
484 488 1.125633 GCCCATGGCCTTTGATGATT 58.874 50.000 6.09 0.00 44.06 2.57
490 494 1.227060 GCCTTTGATGATTGGGCGC 60.227 57.895 0.00 0.00 33.30 6.53
519 523 4.113815 CCGGCAGCCAGGGAATCA 62.114 66.667 13.30 0.00 0.00 2.57
532 536 2.046447 AGGGAATCAAGGAGAGAAGGGA 59.954 50.000 0.00 0.00 0.00 4.20
559 572 2.101233 GTTTCTTCTCCGGAGCCGC 61.101 63.158 27.39 9.27 38.24 6.53
636 1567 7.974482 ACTAACTCGCCTAACTTGTTAAAAT 57.026 32.000 0.00 0.00 0.00 1.82
647 1578 7.651704 CCTAACTTGTTAAAATTTGAGTGGTGG 59.348 37.037 0.00 0.00 0.00 4.61
664 1595 4.394300 GTGGTGGAGTTTTGATCAGATGAG 59.606 45.833 0.00 0.00 0.00 2.90
665 1596 3.944015 GGTGGAGTTTTGATCAGATGAGG 59.056 47.826 0.00 0.00 0.00 3.86
666 1597 4.323792 GGTGGAGTTTTGATCAGATGAGGA 60.324 45.833 0.00 0.00 0.00 3.71
667 1598 4.633565 GTGGAGTTTTGATCAGATGAGGAC 59.366 45.833 0.00 0.00 0.00 3.85
668 1599 3.868077 GGAGTTTTGATCAGATGAGGACG 59.132 47.826 0.00 0.00 0.00 4.79
669 1600 3.866651 AGTTTTGATCAGATGAGGACGG 58.133 45.455 0.00 0.00 0.00 4.79
670 1601 2.939103 GTTTTGATCAGATGAGGACGGG 59.061 50.000 0.00 0.00 0.00 5.28
671 1602 1.123077 TTGATCAGATGAGGACGGGG 58.877 55.000 0.00 0.00 0.00 5.73
672 1603 1.369321 GATCAGATGAGGACGGGGC 59.631 63.158 0.00 0.00 0.00 5.80
673 1604 2.427540 GATCAGATGAGGACGGGGCG 62.428 65.000 0.00 0.00 0.00 6.13
674 1605 3.461773 CAGATGAGGACGGGGCGT 61.462 66.667 0.00 0.00 45.10 5.68
695 1626 4.974721 CCCGTTGGCTGGGCAGTT 62.975 66.667 0.00 0.00 40.47 3.16
696 1627 3.673484 CCGTTGGCTGGGCAGTTG 61.673 66.667 0.00 0.00 0.00 3.16
697 1628 3.673484 CGTTGGCTGGGCAGTTGG 61.673 66.667 0.00 0.00 0.00 3.77
698 1629 3.305516 GTTGGCTGGGCAGTTGGG 61.306 66.667 0.00 0.00 0.00 4.12
699 1630 4.619320 TTGGCTGGGCAGTTGGGG 62.619 66.667 0.00 0.00 0.00 4.96
701 1632 4.621087 GGCTGGGCAGTTGGGGTT 62.621 66.667 0.00 0.00 0.00 4.11
702 1633 2.438795 GCTGGGCAGTTGGGGTTA 59.561 61.111 0.00 0.00 0.00 2.85
703 1634 1.977009 GCTGGGCAGTTGGGGTTAC 60.977 63.158 0.00 0.00 0.00 2.50
704 1635 1.767692 CTGGGCAGTTGGGGTTACT 59.232 57.895 0.00 0.00 0.00 2.24
705 1636 0.609131 CTGGGCAGTTGGGGTTACTG 60.609 60.000 0.00 0.00 44.55 2.74
709 1640 2.946947 CAGTTGGGGTTACTGCCAG 58.053 57.895 0.00 0.00 36.88 4.85
710 1641 1.074951 AGTTGGGGTTACTGCCAGC 59.925 57.895 0.00 0.00 0.00 4.85
711 1642 1.977009 GTTGGGGTTACTGCCAGCC 60.977 63.158 0.00 0.00 0.00 4.85
714 1645 2.361230 GGGTTACTGCCAGCCCAC 60.361 66.667 1.35 0.00 38.76 4.61
715 1646 2.361230 GGTTACTGCCAGCCCACC 60.361 66.667 0.00 0.00 0.00 4.61
716 1647 2.361230 GTTACTGCCAGCCCACCC 60.361 66.667 0.00 0.00 0.00 4.61
717 1648 4.028490 TTACTGCCAGCCCACCCG 62.028 66.667 0.00 0.00 0.00 5.28
723 1654 4.760047 CCAGCCCACCCGAGTTCG 62.760 72.222 0.00 0.00 39.44 3.95
724 1655 3.691342 CAGCCCACCCGAGTTCGA 61.691 66.667 2.59 0.00 43.02 3.71
725 1656 3.382832 AGCCCACCCGAGTTCGAG 61.383 66.667 2.59 0.00 43.02 4.04
726 1657 3.692406 GCCCACCCGAGTTCGAGT 61.692 66.667 2.59 0.00 43.02 4.18
727 1658 2.572284 CCCACCCGAGTTCGAGTC 59.428 66.667 2.59 0.00 43.02 3.36
728 1659 2.572284 CCACCCGAGTTCGAGTCC 59.428 66.667 2.59 0.00 43.02 3.85
729 1660 2.572284 CACCCGAGTTCGAGTCCC 59.428 66.667 2.59 0.00 43.02 4.46
730 1661 3.060615 ACCCGAGTTCGAGTCCCG 61.061 66.667 2.59 0.00 43.02 5.14
731 1662 3.823330 CCCGAGTTCGAGTCCCGG 61.823 72.222 2.59 0.00 43.02 5.73
732 1663 4.493747 CCGAGTTCGAGTCCCGGC 62.494 72.222 0.00 0.00 43.02 6.13
733 1664 3.441290 CGAGTTCGAGTCCCGGCT 61.441 66.667 0.00 0.00 43.02 5.52
734 1665 2.490685 GAGTTCGAGTCCCGGCTC 59.509 66.667 0.00 0.00 39.14 4.70
749 1680 3.103911 CTCGGACGCGTGGTGTTC 61.104 66.667 20.70 0.00 0.00 3.18
750 1681 3.834447 CTCGGACGCGTGGTGTTCA 62.834 63.158 20.70 0.00 0.00 3.18
751 1682 3.698463 CGGACGCGTGGTGTTCAC 61.698 66.667 20.70 0.00 42.74 3.18
788 1719 4.499037 AAAAATGTCAACGAGGGTTAGC 57.501 40.909 0.00 0.00 33.72 3.09
789 1720 2.109425 AATGTCAACGAGGGTTAGCC 57.891 50.000 0.00 0.00 33.72 3.93
801 1732 1.763968 GGTTAGCCCTTGGATTGGTC 58.236 55.000 0.00 0.00 0.00 4.02
802 1733 1.285078 GGTTAGCCCTTGGATTGGTCT 59.715 52.381 0.00 0.00 0.00 3.85
803 1734 2.291605 GGTTAGCCCTTGGATTGGTCTT 60.292 50.000 0.00 0.00 0.00 3.01
804 1735 3.431415 GTTAGCCCTTGGATTGGTCTTT 58.569 45.455 0.00 0.00 0.00 2.52
805 1736 2.702270 AGCCCTTGGATTGGTCTTTT 57.298 45.000 0.00 0.00 0.00 2.27
806 1737 2.976440 AGCCCTTGGATTGGTCTTTTT 58.024 42.857 0.00 0.00 0.00 1.94
846 1777 3.918294 TCAGATGATCAGTTGCCATGA 57.082 42.857 0.09 0.00 0.00 3.07
847 1778 3.805207 TCAGATGATCAGTTGCCATGAG 58.195 45.455 0.09 0.00 0.00 2.90
848 1779 2.290916 CAGATGATCAGTTGCCATGAGC 59.709 50.000 0.09 0.00 44.14 4.26
849 1780 2.172930 AGATGATCAGTTGCCATGAGCT 59.827 45.455 0.09 0.00 44.23 4.09
850 1781 2.034104 TGATCAGTTGCCATGAGCTC 57.966 50.000 6.82 6.82 44.23 4.09
851 1782 1.279846 TGATCAGTTGCCATGAGCTCA 59.720 47.619 20.79 20.79 44.23 4.26
852 1783 2.092592 TGATCAGTTGCCATGAGCTCAT 60.093 45.455 23.75 23.75 44.23 2.90
853 1784 2.502142 TCAGTTGCCATGAGCTCATT 57.498 45.000 26.70 8.54 44.23 2.57
854 1785 2.362736 TCAGTTGCCATGAGCTCATTC 58.637 47.619 26.70 20.13 44.23 2.67
855 1786 2.026542 TCAGTTGCCATGAGCTCATTCT 60.027 45.455 26.70 15.63 44.23 2.40
856 1787 3.198417 TCAGTTGCCATGAGCTCATTCTA 59.802 43.478 26.70 14.72 44.23 2.10
857 1788 4.135306 CAGTTGCCATGAGCTCATTCTAT 58.865 43.478 26.70 3.33 44.23 1.98
858 1789 4.213694 CAGTTGCCATGAGCTCATTCTATC 59.786 45.833 26.70 16.08 44.23 2.08
859 1790 3.036075 TGCCATGAGCTCATTCTATCG 57.964 47.619 26.70 13.85 44.23 2.92
860 1791 2.366590 TGCCATGAGCTCATTCTATCGT 59.633 45.455 26.70 0.80 44.23 3.73
861 1792 3.573967 TGCCATGAGCTCATTCTATCGTA 59.426 43.478 26.70 6.87 44.23 3.43
862 1793 4.039124 TGCCATGAGCTCATTCTATCGTAA 59.961 41.667 26.70 2.34 44.23 3.18
863 1794 4.387256 GCCATGAGCTCATTCTATCGTAAC 59.613 45.833 26.70 3.10 38.99 2.50
864 1795 4.926238 CCATGAGCTCATTCTATCGTAACC 59.074 45.833 26.70 0.00 33.61 2.85
865 1796 5.279206 CCATGAGCTCATTCTATCGTAACCT 60.279 44.000 26.70 0.00 33.61 3.50
866 1797 6.071896 CCATGAGCTCATTCTATCGTAACCTA 60.072 42.308 26.70 0.00 33.61 3.08
867 1798 6.954487 TGAGCTCATTCTATCGTAACCTAA 57.046 37.500 13.74 0.00 0.00 2.69
868 1799 7.342769 TGAGCTCATTCTATCGTAACCTAAA 57.657 36.000 13.74 0.00 0.00 1.85
869 1800 7.778083 TGAGCTCATTCTATCGTAACCTAAAA 58.222 34.615 13.74 0.00 0.00 1.52
870 1801 8.255206 TGAGCTCATTCTATCGTAACCTAAAAA 58.745 33.333 13.74 0.00 0.00 1.94
900 1831 7.587037 AACTCATTCTATCCTGAAGAGAGAG 57.413 40.000 12.87 0.00 43.53 3.20
902 1833 7.353525 ACTCATTCTATCCTGAAGAGAGAGAA 58.646 38.462 12.87 0.85 43.53 2.87
1048 1991 1.071385 GAACGAGGCATCCATCATCCT 59.929 52.381 0.00 0.00 0.00 3.24
1091 2034 2.203280 CTCACCAACCACCGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
1093 2036 2.203280 CACCAACCACCGCCAAGA 60.203 61.111 0.00 0.00 0.00 3.02
1544 2889 7.028962 TGTATCATCATAAGCAAAACAACAGC 58.971 34.615 0.00 0.00 0.00 4.40
1687 3036 1.977594 GCGATGATGAACCGCGGTTT 61.978 55.000 41.25 28.69 39.54 3.27
1857 3209 5.941788 AGAAGAATTAATATTCCACCGGCT 58.058 37.500 0.00 0.00 40.91 5.52
2397 3849 3.624777 ACCTCATTTAGCCCAACATCTG 58.375 45.455 0.00 0.00 0.00 2.90
2398 3850 2.360165 CCTCATTTAGCCCAACATCTGC 59.640 50.000 0.00 0.00 0.00 4.26
2399 3851 3.285484 CTCATTTAGCCCAACATCTGCT 58.715 45.455 0.00 0.00 39.10 4.24
2400 3852 3.018856 TCATTTAGCCCAACATCTGCTG 58.981 45.455 0.00 0.00 36.57 4.41
2401 3853 2.877097 TTTAGCCCAACATCTGCTGA 57.123 45.000 0.00 0.00 36.57 4.26
2402 3854 3.370840 TTTAGCCCAACATCTGCTGAT 57.629 42.857 0.00 0.00 36.57 2.90
2664 4125 7.997162 TCGCACTTGAGTGAGATATTATGCTAC 60.997 40.741 14.98 0.00 46.99 3.58
2698 4159 2.208431 GACTCCATGCTCCATTTCTCG 58.792 52.381 0.00 0.00 0.00 4.04
2816 4277 6.766467 ACAGAGGTTTTATTTCTCGTGTTCTT 59.234 34.615 0.00 0.00 33.16 2.52
3173 4634 7.944554 TCAACCAGAAGTTAATTCTTTCCATCT 59.055 33.333 0.00 0.00 46.49 2.90
3327 4788 5.646360 ACCATTTAAGACACCCAGATTAACG 59.354 40.000 0.00 0.00 0.00 3.18
3713 5175 2.091610 TGCTCTAGACCCTGTGCTATCT 60.092 50.000 0.00 0.00 0.00 1.98
3760 5222 7.471721 GCACATGCTACATATTAAAAGACACA 58.528 34.615 0.00 0.00 38.21 3.72
3820 5282 3.981071 AGGCAGCTATACAGTTTGTCA 57.019 42.857 0.00 0.00 0.00 3.58
3854 5316 9.725019 TGAATTATTCTGAGTGTGTTGTATCTT 57.275 29.630 6.50 0.00 0.00 2.40
3859 5321 8.902540 ATTCTGAGTGTGTTGTATCTTAAACA 57.097 30.769 0.00 0.00 34.01 2.83
3862 5324 9.639601 TCTGAGTGTGTTGTATCTTAAACATAG 57.360 33.333 0.00 0.00 38.47 2.23
4175 5640 2.557490 GGTCTACACACCGAAAGAGACT 59.443 50.000 0.00 0.00 34.92 3.24
4186 5651 6.489361 ACACCGAAAGAGACTAGACTTCTTAA 59.511 38.462 0.00 0.00 0.00 1.85
4205 5670 0.323178 AGGAAGCTGCAGAATGTGGG 60.323 55.000 20.43 0.00 39.31 4.61
4220 5685 0.179001 GTGGGGCCACAGTTGTTAGT 60.179 55.000 8.77 0.00 45.53 2.24
4445 5910 4.886579 AGGTTTGTTCAAAATGCATCCTC 58.113 39.130 0.00 0.00 0.00 3.71
4472 5937 3.907474 TCCATAGGACTGTCAGGAAAACA 59.093 43.478 10.38 0.00 0.00 2.83
4542 6007 6.023435 CACATTTGTTCATGGTAGAATCACG 58.977 40.000 0.00 0.00 0.00 4.35
4561 6027 6.693315 TCACGATGTTTCTTTTTCCTTCTT 57.307 33.333 0.00 0.00 0.00 2.52
4704 6171 6.239289 CGGATGCCTAATGGATGGTAAATTTT 60.239 38.462 0.00 0.00 34.57 1.82
4800 6268 1.638529 CTGTGAAGGGAGACAGGAGT 58.361 55.000 0.00 0.00 36.69 3.85
4860 6328 3.001939 GTCTGTGGGTTTTCGTACAAGTG 59.998 47.826 0.00 0.00 0.00 3.16
4954 6425 5.673514 AGCCCAAATATATTTGTTTGCCAG 58.326 37.500 28.10 15.55 44.21 4.85
5116 6590 2.509336 CCGTTCGCGATTGGAGCT 60.509 61.111 19.32 0.00 44.71 4.09
5135 6610 2.545946 GCTCCTTTATCAGATGTTCGGC 59.454 50.000 0.00 0.00 0.00 5.54
5309 8486 8.579682 AAACAAAGAGATAAGTTCATTGCAAC 57.420 30.769 0.00 0.00 0.00 4.17
5314 8491 8.485976 AAGAGATAAGTTCATTGCAACTACTC 57.514 34.615 0.00 5.74 35.45 2.59
5315 8492 7.044798 AGAGATAAGTTCATTGCAACTACTCC 58.955 38.462 0.00 0.00 35.45 3.85
5316 8493 6.116126 AGATAAGTTCATTGCAACTACTCCC 58.884 40.000 0.00 0.00 35.45 4.30
5317 8494 4.373156 AAGTTCATTGCAACTACTCCCT 57.627 40.909 0.00 0.00 35.45 4.20
5318 8495 3.944087 AGTTCATTGCAACTACTCCCTC 58.056 45.455 0.00 0.00 34.70 4.30
5319 8496 2.672961 TCATTGCAACTACTCCCTCG 57.327 50.000 0.00 0.00 0.00 4.63
5320 8497 1.207089 TCATTGCAACTACTCCCTCGG 59.793 52.381 0.00 0.00 0.00 4.63
5322 8499 1.053424 TTGCAACTACTCCCTCGGTT 58.947 50.000 0.00 0.00 0.00 4.44
5323 8500 0.606604 TGCAACTACTCCCTCGGTTC 59.393 55.000 0.00 0.00 0.00 3.62
5324 8501 0.108281 GCAACTACTCCCTCGGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
5325 8502 1.558233 CAACTACTCCCTCGGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
5329 8506 3.991683 ACTACTCCCTCGGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5330 8507 5.134725 ACTACTCCCTCGGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5331 8508 5.713807 ACTACTCCCTCGGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5332 8509 6.856757 ACTACTCCCTCGGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
5333 8510 7.300658 ACTACTCCCTCGGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
5334 8511 6.667558 ACTCCCTCGGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5336 8513 6.267242 ACTCCCTCGGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5337 8514 6.379579 TCCCTCGGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5338 8515 6.842807 TCCCTCGGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5339 8516 7.346436 TCCCTCGGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5340 8517 7.991460 CCCTCGGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5341 8518 9.392259 CCTCGGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5369 8546 8.909708 ACATTTCAAATGGAATACAACATACG 57.090 30.769 14.70 0.00 34.91 3.06
5370 8547 7.973388 ACATTTCAAATGGAATACAACATACGG 59.027 33.333 14.70 0.00 34.91 4.02
5371 8548 7.689446 TTTCAAATGGAATACAACATACGGA 57.311 32.000 0.00 0.00 34.91 4.69
5372 8549 7.873719 TTCAAATGGAATACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
5373 8550 7.258022 TCAAATGGAATACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
5375 8552 7.988028 TCAAATGGAATACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
5376 8553 8.783093 CAAATGGAATACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
5416 8593 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
5417 8594 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
5418 8595 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
5419 8596 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
5420 8597 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
5421 8598 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
5422 8599 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
5423 8600 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
5424 8601 9.624697 GATTCACTCATTTTGCTTTGTATGTAA 57.375 29.630 0.00 0.00 0.00 2.41
5426 8603 9.624697 TTCACTCATTTTGCTTTGTATGTAATC 57.375 29.630 0.00 0.00 0.00 1.75
5427 8604 8.791675 TCACTCATTTTGCTTTGTATGTAATCA 58.208 29.630 0.00 0.00 0.00 2.57
5428 8605 8.853345 CACTCATTTTGCTTTGTATGTAATCAC 58.147 33.333 0.00 0.00 0.00 3.06
5429 8606 8.796475 ACTCATTTTGCTTTGTATGTAATCACT 58.204 29.630 0.00 0.00 0.00 3.41
5430 8607 9.630098 CTCATTTTGCTTTGTATGTAATCACTT 57.370 29.630 0.00 0.00 0.00 3.16
5431 8608 9.409312 TCATTTTGCTTTGTATGTAATCACTTG 57.591 29.630 0.00 0.00 0.00 3.16
5432 8609 9.195411 CATTTTGCTTTGTATGTAATCACTTGT 57.805 29.630 0.00 0.00 0.00 3.16
5433 8610 9.762933 ATTTTGCTTTGTATGTAATCACTTGTT 57.237 25.926 0.00 0.00 0.00 2.83
5434 8611 8.572828 TTTGCTTTGTATGTAATCACTTGTTG 57.427 30.769 0.00 0.00 0.00 3.33
5435 8612 6.676950 TGCTTTGTATGTAATCACTTGTTGG 58.323 36.000 0.00 0.00 0.00 3.77
5436 8613 6.488344 TGCTTTGTATGTAATCACTTGTTGGA 59.512 34.615 0.00 0.00 0.00 3.53
5437 8614 7.013750 TGCTTTGTATGTAATCACTTGTTGGAA 59.986 33.333 0.00 0.00 0.00 3.53
5438 8615 8.028938 GCTTTGTATGTAATCACTTGTTGGAAT 58.971 33.333 0.00 0.00 0.00 3.01
5439 8616 9.559958 CTTTGTATGTAATCACTTGTTGGAATC 57.440 33.333 0.00 0.00 0.00 2.52
5440 8617 8.862325 TTGTATGTAATCACTTGTTGGAATCT 57.138 30.769 0.00 0.00 0.00 2.40
5441 8618 8.492673 TGTATGTAATCACTTGTTGGAATCTC 57.507 34.615 0.00 0.00 0.00 2.75
5442 8619 8.321353 TGTATGTAATCACTTGTTGGAATCTCT 58.679 33.333 0.00 0.00 0.00 3.10
5443 8620 9.817809 GTATGTAATCACTTGTTGGAATCTCTA 57.182 33.333 0.00 0.00 0.00 2.43
5445 8622 9.739276 ATGTAATCACTTGTTGGAATCTCTAAA 57.261 29.630 0.00 0.00 0.00 1.85
5446 8623 9.567776 TGTAATCACTTGTTGGAATCTCTAAAA 57.432 29.630 0.00 0.00 0.00 1.52
5449 8626 8.924511 ATCACTTGTTGGAATCTCTAAAAAGA 57.075 30.769 9.03 0.00 35.06 2.52
5450 8627 8.154649 TCACTTGTTGGAATCTCTAAAAAGAC 57.845 34.615 9.03 0.00 35.06 3.01
5452 8629 9.273016 CACTTGTTGGAATCTCTAAAAAGACTA 57.727 33.333 9.03 0.00 35.06 2.59
5469 8646 7.909485 AAAGACTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
5505 8682 6.889301 AAGATTGATCTTTGCTTTGACTCA 57.111 33.333 0.44 0.00 44.28 3.41
5515 8692 0.443869 CTTTGACTCATTCACGGCGG 59.556 55.000 13.24 0.00 32.26 6.13
5537 8714 0.823356 GCAGTTGCAGGGAGGTTTGA 60.823 55.000 0.00 0.00 41.59 2.69
5552 8729 4.647424 GGTTTGAAATGAACCTGACACA 57.353 40.909 0.00 0.00 42.58 3.72
5559 8736 6.061441 TGAAATGAACCTGACACATACAGTT 58.939 36.000 0.00 0.00 34.04 3.16
5565 8742 2.426522 CTGACACATACAGTTGGGTGG 58.573 52.381 0.00 0.00 32.06 4.61
5573 8750 5.533154 CACATACAGTTGGGTGGAGTAAAAA 59.467 40.000 0.00 0.00 0.00 1.94
5574 8751 6.208599 CACATACAGTTGGGTGGAGTAAAAAT 59.791 38.462 0.00 0.00 0.00 1.82
5576 8753 3.895041 ACAGTTGGGTGGAGTAAAAATGG 59.105 43.478 0.00 0.00 0.00 3.16
5577 8754 4.148838 CAGTTGGGTGGAGTAAAAATGGA 58.851 43.478 0.00 0.00 0.00 3.41
5579 8756 4.105697 AGTTGGGTGGAGTAAAAATGGAGA 59.894 41.667 0.00 0.00 0.00 3.71
5580 8757 4.946160 TGGGTGGAGTAAAAATGGAGAT 57.054 40.909 0.00 0.00 0.00 2.75
5581 8758 4.855340 TGGGTGGAGTAAAAATGGAGATC 58.145 43.478 0.00 0.00 0.00 2.75
5583 8760 5.222233 TGGGTGGAGTAAAAATGGAGATCAA 60.222 40.000 0.00 0.00 0.00 2.57
5584 8761 5.893824 GGGTGGAGTAAAAATGGAGATCAAT 59.106 40.000 0.00 0.00 0.00 2.57
5613 8790 1.529244 GTGGAGGTTGTTGCTGCCT 60.529 57.895 0.00 0.00 34.93 4.75
5620 8797 1.810151 GGTTGTTGCTGCCTTAATCGA 59.190 47.619 0.00 0.00 0.00 3.59
5627 8804 3.202906 TGCTGCCTTAATCGATGGTTAC 58.797 45.455 0.00 0.00 0.00 2.50
5629 8806 3.495001 GCTGCCTTAATCGATGGTTACTC 59.505 47.826 0.00 0.00 0.00 2.59
5637 8814 7.764443 CCTTAATCGATGGTTACTCTTCTTCAA 59.236 37.037 0.00 0.00 0.00 2.69
5666 8843 9.265901 GCTTCTGCTATCTTTGATGACTATTAA 57.734 33.333 0.00 0.00 36.03 1.40
5693 8870 8.942338 TTAATATCGCTTGACTTTACTCATGT 57.058 30.769 0.00 0.00 0.00 3.21
5700 8877 6.699204 CGCTTGACTTTACTCATGTCATCTAT 59.301 38.462 0.00 0.00 38.88 1.98
5748 8963 3.636679 AGTAGCTCATGAACTGGCTAGA 58.363 45.455 13.12 0.00 35.59 2.43
5792 9007 5.380043 CAAATATATGGAAGGACACTGCCT 58.620 41.667 0.00 0.00 43.63 4.75
5793 9008 4.899352 ATATATGGAAGGACACTGCCTC 57.101 45.455 0.00 0.00 43.63 4.70
5794 9009 1.951209 TATGGAAGGACACTGCCTCA 58.049 50.000 0.00 0.00 43.63 3.86
5795 9010 0.617413 ATGGAAGGACACTGCCTCAG 59.383 55.000 0.00 0.00 43.63 3.35
5801 9016 0.322975 GGACACTGCCTCAGATGTGT 59.677 55.000 0.29 0.00 44.92 3.72
5816 9031 8.834465 CCTCAGATGTGTTTATTCCTCTTATTG 58.166 37.037 0.00 0.00 0.00 1.90
5826 9041 5.931441 ATTCCTCTTATTGTAAGCGATGC 57.069 39.130 0.00 0.00 0.00 3.91
5838 9053 2.708386 AGCGATGCTACGATCCTTAC 57.292 50.000 7.23 0.00 36.99 2.34
5839 9054 1.954382 AGCGATGCTACGATCCTTACA 59.046 47.619 7.23 0.00 36.99 2.41
6032 10014 4.178540 CAAATGCCCTTTGTTGATGCTAG 58.821 43.478 1.68 0.00 39.55 3.42
6039 10021 4.159135 CCCTTTGTTGATGCTAGCAGAAAT 59.841 41.667 23.89 5.82 0.00 2.17
6054 10036 7.440556 GCTAGCAGAAATGAATCTTCTACATCA 59.559 37.037 10.63 0.00 31.84 3.07
6058 10040 9.875675 GCAGAAATGAATCTTCTACATCATTAC 57.124 33.333 0.00 0.00 40.58 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.195165 TGGTTTTGGTAATTAATGACAATCCA 57.805 30.769 5.29 10.81 0.00 3.41
9 10 9.495572 TTTGGTTTTGGTAATTAATGACAATCC 57.504 29.630 5.29 8.95 0.00 3.01
82 83 2.045926 GCGATGTGGTGGGAGCTT 60.046 61.111 0.00 0.00 0.00 3.74
86 87 2.668632 GGAAGCGATGTGGTGGGA 59.331 61.111 0.00 0.00 0.00 4.37
136 137 4.569023 CGATGGCTGCGCGGTCTA 62.569 66.667 23.28 10.69 0.00 2.59
165 166 1.599797 GTGGTTGTGGAAGGGGACG 60.600 63.158 0.00 0.00 0.00 4.79
187 188 0.108138 GTGTGCCTCCTATTGACGCT 60.108 55.000 0.00 0.00 0.00 5.07
195 196 2.656646 CGTGCAGTGTGCCTCCTA 59.343 61.111 0.00 0.00 44.23 2.94
241 242 0.176680 ATCTCAGCTAGGTGTTGCGG 59.823 55.000 20.76 8.14 0.00 5.69
283 284 2.970324 TGTTGGAGGTCGCAACGC 60.970 61.111 0.00 0.00 33.03 4.84
284 285 2.604174 GGTGTTGGAGGTCGCAACG 61.604 63.158 0.00 0.00 33.03 4.10
285 286 2.258726 GGGTGTTGGAGGTCGCAAC 61.259 63.158 0.00 0.00 0.00 4.17
286 287 2.112297 GGGTGTTGGAGGTCGCAA 59.888 61.111 0.00 0.00 0.00 4.85
287 288 3.164977 TGGGTGTTGGAGGTCGCA 61.165 61.111 0.00 0.00 0.00 5.10
289 290 1.597027 GTGTGGGTGTTGGAGGTCG 60.597 63.158 0.00 0.00 0.00 4.79
338 342 1.369625 GGGTGGAGCACGATTGTAAG 58.630 55.000 0.00 0.00 34.83 2.34
340 344 0.907704 AGGGGTGGAGCACGATTGTA 60.908 55.000 0.00 0.00 34.83 2.41
374 378 1.675310 CCGGTGTGGTGATGCATGT 60.675 57.895 2.46 0.00 0.00 3.21
376 380 1.078214 CTCCGGTGTGGTGATGCAT 60.078 57.895 0.00 0.00 39.52 3.96
380 384 0.034896 GTTGTCTCCGGTGTGGTGAT 59.965 55.000 0.00 0.00 41.99 3.06
381 385 1.444250 GTTGTCTCCGGTGTGGTGA 59.556 57.895 0.00 0.00 37.91 4.02
383 387 2.067605 TGGTTGTCTCCGGTGTGGT 61.068 57.895 0.00 0.00 39.52 4.16
470 474 1.321805 CGCCCAATCATCAAAGGCCA 61.322 55.000 5.01 0.00 40.65 5.36
503 507 2.045045 TTGATTCCCTGGCTGCCG 60.045 61.111 14.98 8.81 0.00 5.69
507 511 1.211456 CTCTCCTTGATTCCCTGGCT 58.789 55.000 0.00 0.00 0.00 4.75
508 512 1.207791 TCTCTCCTTGATTCCCTGGC 58.792 55.000 0.00 0.00 0.00 4.85
519 523 0.335361 TAGCCGTCCCTTCTCTCCTT 59.665 55.000 0.00 0.00 0.00 3.36
532 536 0.903236 GGAGAAGAAACCCTAGCCGT 59.097 55.000 0.00 0.00 0.00 5.68
575 588 0.912486 ACTTTTCCCATCTCCCTCCG 59.088 55.000 0.00 0.00 0.00 4.63
576 589 3.458044 AAACTTTTCCCATCTCCCTCC 57.542 47.619 0.00 0.00 0.00 4.30
591 604 4.962362 AGTTTCCCCTCACATCAAAAACTT 59.038 37.500 0.00 0.00 33.07 2.66
636 1567 4.531854 TGATCAAAACTCCACCACTCAAA 58.468 39.130 0.00 0.00 0.00 2.69
647 1578 3.868077 CCGTCCTCATCTGATCAAAACTC 59.132 47.826 0.00 0.00 0.00 3.01
679 1610 3.673484 CAACTGCCCAGCCAACGG 61.673 66.667 0.00 0.00 0.00 4.44
680 1611 3.673484 CCAACTGCCCAGCCAACG 61.673 66.667 0.00 0.00 0.00 4.10
681 1612 3.305516 CCCAACTGCCCAGCCAAC 61.306 66.667 0.00 0.00 0.00 3.77
682 1613 4.619320 CCCCAACTGCCCAGCCAA 62.619 66.667 0.00 0.00 0.00 4.52
684 1615 3.218386 TAACCCCAACTGCCCAGCC 62.218 63.158 0.00 0.00 0.00 4.85
685 1616 1.977009 GTAACCCCAACTGCCCAGC 60.977 63.158 0.00 0.00 0.00 4.85
686 1617 0.609131 CAGTAACCCCAACTGCCCAG 60.609 60.000 0.00 0.00 38.08 4.45
687 1618 1.458486 CAGTAACCCCAACTGCCCA 59.542 57.895 0.00 0.00 38.08 5.36
688 1619 4.415783 CAGTAACCCCAACTGCCC 57.584 61.111 0.00 0.00 38.08 5.36
691 1622 1.244019 GCTGGCAGTAACCCCAACTG 61.244 60.000 17.16 0.00 45.80 3.16
692 1623 1.074951 GCTGGCAGTAACCCCAACT 59.925 57.895 17.16 0.00 0.00 3.16
693 1624 1.977009 GGCTGGCAGTAACCCCAAC 60.977 63.158 17.16 0.00 0.00 3.77
694 1625 2.438795 GGCTGGCAGTAACCCCAA 59.561 61.111 17.16 0.00 0.00 4.12
695 1626 3.657350 GGGCTGGCAGTAACCCCA 61.657 66.667 19.48 0.00 36.24 4.96
696 1627 3.657350 TGGGCTGGCAGTAACCCC 61.657 66.667 21.53 19.84 42.07 4.95
697 1628 2.361230 GTGGGCTGGCAGTAACCC 60.361 66.667 18.69 18.69 43.14 4.11
698 1629 2.361230 GGTGGGCTGGCAGTAACC 60.361 66.667 17.16 16.52 0.00 2.85
699 1630 2.361230 GGGTGGGCTGGCAGTAAC 60.361 66.667 17.16 11.55 0.00 2.50
700 1631 4.028490 CGGGTGGGCTGGCAGTAA 62.028 66.667 17.16 0.00 0.00 2.24
706 1637 4.760047 CGAACTCGGGTGGGCTGG 62.760 72.222 0.00 0.00 35.37 4.85
707 1638 3.649277 CTCGAACTCGGGTGGGCTG 62.649 68.421 0.00 0.00 40.29 4.85
708 1639 3.382832 CTCGAACTCGGGTGGGCT 61.383 66.667 0.00 0.00 40.29 5.19
714 1645 3.823330 CCGGGACTCGAACTCGGG 61.823 72.222 18.93 0.00 46.21 5.14
716 1647 3.398353 GAGCCGGGACTCGAACTCG 62.398 68.421 2.18 4.83 42.43 4.18
717 1648 2.490685 GAGCCGGGACTCGAACTC 59.509 66.667 2.18 0.00 42.43 3.01
732 1663 3.103911 GAACACCACGCGTCCGAG 61.104 66.667 9.86 3.46 38.29 4.63
733 1664 3.902086 TGAACACCACGCGTCCGA 61.902 61.111 9.86 0.00 38.29 4.55
734 1665 3.698463 GTGAACACCACGCGTCCG 61.698 66.667 9.86 4.75 35.86 4.79
767 1698 3.254903 GGCTAACCCTCGTTGACATTTTT 59.745 43.478 0.00 0.00 33.17 1.94
768 1699 2.817844 GGCTAACCCTCGTTGACATTTT 59.182 45.455 0.00 0.00 33.17 1.82
769 1700 2.433436 GGCTAACCCTCGTTGACATTT 58.567 47.619 0.00 0.00 33.17 2.32
770 1701 2.109425 GGCTAACCCTCGTTGACATT 57.891 50.000 0.00 0.00 33.17 2.71
771 1702 3.855159 GGCTAACCCTCGTTGACAT 57.145 52.632 0.00 0.00 33.17 3.06
782 1713 1.285078 AGACCAATCCAAGGGCTAACC 59.715 52.381 0.00 0.00 44.68 2.85
783 1714 2.808906 AGACCAATCCAAGGGCTAAC 57.191 50.000 0.00 0.00 44.68 2.34
784 1715 3.825908 AAAGACCAATCCAAGGGCTAA 57.174 42.857 0.00 0.00 46.21 3.09
785 1716 3.825908 AAAAGACCAATCCAAGGGCTA 57.174 42.857 0.00 0.00 46.21 3.93
824 1755 7.044025 GCTCATGGCAACTGATCATCTGATC 62.044 48.000 12.30 12.30 44.38 2.92
825 1756 4.390264 CTCATGGCAACTGATCATCTGAT 58.610 43.478 0.00 0.00 35.59 2.90
826 1757 3.805207 CTCATGGCAACTGATCATCTGA 58.195 45.455 0.00 0.00 37.61 3.27
827 1758 2.290916 GCTCATGGCAACTGATCATCTG 59.709 50.000 0.00 0.00 41.35 2.90
828 1759 2.172930 AGCTCATGGCAACTGATCATCT 59.827 45.455 0.00 0.00 44.79 2.90
829 1760 2.548904 GAGCTCATGGCAACTGATCATC 59.451 50.000 9.40 0.00 44.79 2.92
830 1761 2.092592 TGAGCTCATGGCAACTGATCAT 60.093 45.455 13.74 0.00 44.79 2.45
831 1762 1.279846 TGAGCTCATGGCAACTGATCA 59.720 47.619 13.74 0.00 44.79 2.92
832 1763 2.034104 TGAGCTCATGGCAACTGATC 57.966 50.000 13.74 0.00 44.79 2.92
833 1764 2.730934 ATGAGCTCATGGCAACTGAT 57.269 45.000 28.21 0.28 44.79 2.90
834 1765 2.026542 AGAATGAGCTCATGGCAACTGA 60.027 45.455 29.34 0.00 44.79 3.41
835 1766 2.366533 AGAATGAGCTCATGGCAACTG 58.633 47.619 29.34 0.00 44.79 3.16
836 1767 2.803030 AGAATGAGCTCATGGCAACT 57.197 45.000 29.34 18.80 44.79 3.16
837 1768 3.186001 CGATAGAATGAGCTCATGGCAAC 59.814 47.826 29.34 18.45 41.00 4.17
838 1769 3.181462 ACGATAGAATGAGCTCATGGCAA 60.181 43.478 29.34 15.48 41.49 4.52
839 1770 2.366590 ACGATAGAATGAGCTCATGGCA 59.633 45.455 29.34 16.89 41.49 4.92
840 1771 3.037431 ACGATAGAATGAGCTCATGGC 57.963 47.619 29.34 22.68 36.59 4.40
841 1772 4.926238 GGTTACGATAGAATGAGCTCATGG 59.074 45.833 29.34 12.04 36.59 3.66
842 1773 5.777802 AGGTTACGATAGAATGAGCTCATG 58.222 41.667 29.34 17.56 36.59 3.07
843 1774 7.526142 TTAGGTTACGATAGAATGAGCTCAT 57.474 36.000 23.75 23.75 37.67 2.90
844 1775 6.954487 TTAGGTTACGATAGAATGAGCTCA 57.046 37.500 20.79 20.79 41.38 4.26
845 1776 8.644318 TTTTTAGGTTACGATAGAATGAGCTC 57.356 34.615 6.82 6.82 41.38 4.09
873 1804 8.820831 TCTCTCTTCAGGATAGAATGAGTTTTT 58.179 33.333 0.00 0.00 33.56 1.94
874 1805 8.372877 TCTCTCTTCAGGATAGAATGAGTTTT 57.627 34.615 0.00 0.00 33.56 2.43
875 1806 7.838696 TCTCTCTCTTCAGGATAGAATGAGTTT 59.161 37.037 0.00 0.00 33.56 2.66
876 1807 7.353525 TCTCTCTCTTCAGGATAGAATGAGTT 58.646 38.462 0.00 0.00 33.56 3.01
877 1808 6.910191 TCTCTCTCTTCAGGATAGAATGAGT 58.090 40.000 0.00 0.00 33.56 3.41
944 1876 2.740055 CTGGTCTGACTGCCGTGC 60.740 66.667 7.85 0.00 0.00 5.34
1068 2011 1.603739 GGTGGTTGGTGAGAAGGGC 60.604 63.158 0.00 0.00 0.00 5.19
1375 2324 1.545706 GGAGGGAGGTGGTGTGACTC 61.546 65.000 0.00 0.00 0.00 3.36
1376 2325 1.536662 GGAGGGAGGTGGTGTGACT 60.537 63.158 0.00 0.00 0.00 3.41
1378 2327 2.603473 CGGAGGGAGGTGGTGTGA 60.603 66.667 0.00 0.00 0.00 3.58
1440 2391 7.093814 CCAAACCAATCCAGATAAGAATCAACA 60.094 37.037 0.00 0.00 34.28 3.33
1507 2852 7.065085 GCTTATGATGATACATGGCGAAGTTAT 59.935 37.037 0.00 0.00 0.00 1.89
1544 2889 4.376210 CGCAATTAACCAAACAAGTGCATG 60.376 41.667 7.40 0.00 43.81 4.06
1687 3036 1.702182 TTGCCAATTGAAGTGCCTCA 58.298 45.000 7.12 0.00 0.00 3.86
1754 3103 8.495949 CGCAGAAGAGAAAGAAATGTTTTACTA 58.504 33.333 0.00 0.00 0.00 1.82
1845 3197 1.202830 ACACACAAAGCCGGTGGAATA 60.203 47.619 1.90 0.00 40.54 1.75
1857 3209 0.242286 GGCACACACACACACACAAA 59.758 50.000 0.00 0.00 0.00 2.83
1914 3366 1.128692 GGTTCATCTTAGTGCACGTGC 59.871 52.381 33.11 33.11 42.50 5.34
2339 3791 7.333423 GTCTTGCAGACCAATACTATAAACACA 59.667 37.037 5.33 0.00 39.28 3.72
2397 3849 6.073331 GCTTAAGGTATCATCACTTCATCAGC 60.073 42.308 4.29 0.00 0.00 4.26
2398 3850 7.215789 AGCTTAAGGTATCATCACTTCATCAG 58.784 38.462 5.12 0.00 0.00 2.90
2399 3851 7.129457 AGCTTAAGGTATCATCACTTCATCA 57.871 36.000 5.12 0.00 0.00 3.07
2400 3852 9.202273 CTTAGCTTAAGGTATCATCACTTCATC 57.798 37.037 14.81 0.00 32.17 2.92
2401 3853 8.928448 TCTTAGCTTAAGGTATCATCACTTCAT 58.072 33.333 14.81 0.00 36.45 2.57
2402 3854 8.306313 TCTTAGCTTAAGGTATCATCACTTCA 57.694 34.615 14.81 0.00 36.45 3.02
2403 3855 9.418045 GATCTTAGCTTAAGGTATCATCACTTC 57.582 37.037 14.81 2.03 36.45 3.01
2404 3856 8.085296 CGATCTTAGCTTAAGGTATCATCACTT 58.915 37.037 21.63 0.00 36.45 3.16
2405 3857 7.448777 TCGATCTTAGCTTAAGGTATCATCACT 59.551 37.037 21.63 6.50 36.45 3.41
2664 4125 2.687370 TGGAGTCATGAACATGTCACG 58.313 47.619 13.35 0.00 39.72 4.35
2698 4159 3.087370 AGGAATCCTGCTAAAACACCC 57.913 47.619 0.00 0.00 29.57 4.61
2816 4277 0.252012 ATCCACCGAATTTGGGGCAA 60.252 50.000 16.44 3.32 34.56 4.52
3327 4788 5.239963 TGAAGAAAACGGAATACTCCCAAAC 59.760 40.000 0.00 0.00 38.71 2.93
3339 4800 3.146066 CCAATGTCCTGAAGAAAACGGA 58.854 45.455 0.00 0.00 0.00 4.69
3787 5249 7.223584 TGTATAGCTGCCTAAAATATGAAGCA 58.776 34.615 0.00 0.00 0.00 3.91
3854 5316 7.175816 TGCAAAGTACAATGAAGGCTATGTTTA 59.824 33.333 0.00 0.00 0.00 2.01
3859 5321 4.096984 GCTGCAAAGTACAATGAAGGCTAT 59.903 41.667 7.73 0.00 0.00 2.97
3862 5324 2.030007 TGCTGCAAAGTACAATGAAGGC 60.030 45.455 0.00 5.94 0.00 4.35
4099 5561 7.410087 GCGCTTGCTGCAAAATTATATCATTAG 60.410 37.037 16.74 0.25 43.06 1.73
4104 5569 4.619931 GCGCTTGCTGCAAAATTATATC 57.380 40.909 16.74 0.00 43.06 1.63
4186 5651 0.323178 CCCACATTCTGCAGCTTCCT 60.323 55.000 9.47 0.00 0.00 3.36
4220 5685 4.016444 GCCTTATGAACATCTCCAAACCA 58.984 43.478 0.00 0.00 0.00 3.67
4445 5910 1.765314 CTGACAGTCCTATGGAAGGGG 59.235 57.143 0.00 0.00 46.55 4.79
4472 5937 3.068165 GCAAAGAAAGTGGCACCTAAGTT 59.932 43.478 15.27 0.00 0.00 2.66
4569 6035 9.515020 CAACACATTTTAGTAATTCACACAACT 57.485 29.630 0.00 0.00 0.00 3.16
4704 6171 8.721478 GCTGAAAACAAAGACAGAGTTATATCA 58.279 33.333 0.00 0.00 32.90 2.15
4800 6268 1.186200 AGCGAGGCTTGAGTGATGTA 58.814 50.000 5.76 0.00 33.89 2.29
4860 6328 5.481105 TGATTGCTGATTCCAAATCCAAAC 58.519 37.500 0.00 0.00 0.00 2.93
4954 6425 4.293415 CTGTTTTCTGATGCACCAACTTC 58.707 43.478 0.00 0.00 0.00 3.01
5033 6507 9.706691 ATTCCACAGGTGTATATTACTTTATCG 57.293 33.333 0.00 0.00 0.00 2.92
5116 6590 4.487714 AAGCCGAACATCTGATAAAGGA 57.512 40.909 0.00 0.00 0.00 3.36
5262 8303 6.798427 TTAATAATATTGCACCAGCCCAAA 57.202 33.333 0.00 0.00 41.13 3.28
5297 8474 3.617531 CGAGGGAGTAGTTGCAATGAACT 60.618 47.826 0.59 6.71 39.54 3.01
5301 8478 1.066143 ACCGAGGGAGTAGTTGCAATG 60.066 52.381 0.59 0.00 0.00 2.82
5304 8481 0.606604 GAACCGAGGGAGTAGTTGCA 59.393 55.000 0.00 0.00 0.00 4.08
5305 8482 0.108281 GGAACCGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17
5306 8483 1.558233 AGGAACCGAGGGAGTAGTTG 58.442 55.000 0.00 0.00 0.00 3.16
5308 8485 3.463048 TTTAGGAACCGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
5309 8486 7.450944 ACTTATATTTAGGAACCGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
5314 8491 6.667558 AGACTTATATTTAGGAACCGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5315 8492 8.959705 AAAAGACTTATATTTAGGAACCGAGG 57.040 34.615 0.00 0.00 0.00 4.63
5343 8520 9.009327 CGTATGTTGTATTCCATTTGAAATGTC 57.991 33.333 15.93 3.21 36.33 3.06
5344 8521 7.973388 CCGTATGTTGTATTCCATTTGAAATGT 59.027 33.333 15.93 1.43 36.33 2.71
5345 8522 8.187480 TCCGTATGTTGTATTCCATTTGAAATG 58.813 33.333 10.84 10.84 36.33 2.32
5346 8523 8.287439 TCCGTATGTTGTATTCCATTTGAAAT 57.713 30.769 0.00 0.00 36.33 2.17
5347 8524 7.689446 TCCGTATGTTGTATTCCATTTGAAA 57.311 32.000 0.00 0.00 36.33 2.69
5348 8525 7.338196 ACATCCGTATGTTGTATTCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
5349 8526 6.826231 ACATCCGTATGTTGTATTCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
5350 8527 7.026631 ACATCCGTATGTTGTATTCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
5351 8528 8.783093 CATACATCCGTATGTTGTATTCCATTT 58.217 33.333 0.00 0.00 46.70 2.32
5352 8529 8.322906 CATACATCCGTATGTTGTATTCCATT 57.677 34.615 0.00 0.00 46.70 3.16
5353 8530 7.905604 CATACATCCGTATGTTGTATTCCAT 57.094 36.000 0.00 0.00 46.70 3.41
5393 8570 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
5394 8571 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
5395 8572 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
5396 8573 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
5397 8574 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
5398 8575 9.624697 TTACATACAAAGCAAAATGAGTGAATC 57.375 29.630 0.00 0.00 0.00 2.52
5400 8577 9.624697 GATTACATACAAAGCAAAATGAGTGAA 57.375 29.630 0.00 0.00 0.00 3.18
5401 8578 8.791675 TGATTACATACAAAGCAAAATGAGTGA 58.208 29.630 0.00 0.00 0.00 3.41
5402 8579 8.853345 GTGATTACATACAAAGCAAAATGAGTG 58.147 33.333 0.00 0.00 0.00 3.51
5403 8580 8.796475 AGTGATTACATACAAAGCAAAATGAGT 58.204 29.630 0.00 0.00 0.00 3.41
5404 8581 9.630098 AAGTGATTACATACAAAGCAAAATGAG 57.370 29.630 0.00 0.00 0.00 2.90
5405 8582 9.409312 CAAGTGATTACATACAAAGCAAAATGA 57.591 29.630 0.00 0.00 0.00 2.57
5406 8583 9.195411 ACAAGTGATTACATACAAAGCAAAATG 57.805 29.630 0.00 0.00 0.00 2.32
5407 8584 9.762933 AACAAGTGATTACATACAAAGCAAAAT 57.237 25.926 0.00 0.00 0.00 1.82
5408 8585 9.029243 CAACAAGTGATTACATACAAAGCAAAA 57.971 29.630 0.00 0.00 0.00 2.44
5409 8586 7.651304 CCAACAAGTGATTACATACAAAGCAAA 59.349 33.333 0.00 0.00 0.00 3.68
5410 8587 7.013750 TCCAACAAGTGATTACATACAAAGCAA 59.986 33.333 0.00 0.00 0.00 3.91
5411 8588 6.488344 TCCAACAAGTGATTACATACAAAGCA 59.512 34.615 0.00 0.00 0.00 3.91
5412 8589 6.908825 TCCAACAAGTGATTACATACAAAGC 58.091 36.000 0.00 0.00 0.00 3.51
5413 8590 9.559958 GATTCCAACAAGTGATTACATACAAAG 57.440 33.333 0.00 0.00 0.00 2.77
5414 8591 9.295825 AGATTCCAACAAGTGATTACATACAAA 57.704 29.630 0.00 0.00 0.00 2.83
5415 8592 8.862325 AGATTCCAACAAGTGATTACATACAA 57.138 30.769 0.00 0.00 0.00 2.41
5416 8593 8.321353 AGAGATTCCAACAAGTGATTACATACA 58.679 33.333 0.00 0.00 0.00 2.29
5417 8594 8.723942 AGAGATTCCAACAAGTGATTACATAC 57.276 34.615 0.00 0.00 0.00 2.39
5419 8596 9.739276 TTTAGAGATTCCAACAAGTGATTACAT 57.261 29.630 0.00 0.00 0.00 2.29
5420 8597 9.567776 TTTTAGAGATTCCAACAAGTGATTACA 57.432 29.630 0.00 0.00 0.00 2.41
5423 8600 9.354673 TCTTTTTAGAGATTCCAACAAGTGATT 57.645 29.630 0.00 0.00 0.00 2.57
5424 8601 8.787852 GTCTTTTTAGAGATTCCAACAAGTGAT 58.212 33.333 0.00 0.00 0.00 3.06
5425 8602 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
5426 8603 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
5443 8620 8.765517 TCCTCCGTTCCTAAATATAGTCTTTTT 58.234 33.333 0.00 0.00 0.00 1.94
5444 8621 8.315220 TCCTCCGTTCCTAAATATAGTCTTTT 57.685 34.615 0.00 0.00 0.00 2.27
5445 8622 7.909485 TCCTCCGTTCCTAAATATAGTCTTT 57.091 36.000 0.00 0.00 0.00 2.52
5446 8623 7.564292 ACTTCCTCCGTTCCTAAATATAGTCTT 59.436 37.037 0.00 0.00 0.00 3.01
5447 8624 7.068061 ACTTCCTCCGTTCCTAAATATAGTCT 58.932 38.462 0.00 0.00 0.00 3.24
5448 8625 7.287512 ACTTCCTCCGTTCCTAAATATAGTC 57.712 40.000 0.00 0.00 0.00 2.59
5449 8626 7.781693 TGTACTTCCTCCGTTCCTAAATATAGT 59.218 37.037 0.00 0.00 0.00 2.12
5450 8627 8.174733 TGTACTTCCTCCGTTCCTAAATATAG 57.825 38.462 0.00 0.00 0.00 1.31
5452 8629 7.427989 TTGTACTTCCTCCGTTCCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
5458 8635 3.581332 TCATTTGTACTTCCTCCGTTCCT 59.419 43.478 0.00 0.00 0.00 3.36
5461 8638 6.059484 TCTTTTCATTTGTACTTCCTCCGTT 58.941 36.000 0.00 0.00 0.00 4.44
5500 8677 1.519455 CCTCCGCCGTGAATGAGTC 60.519 63.158 0.00 0.00 0.00 3.36
5505 8682 3.254024 AACTGCCTCCGCCGTGAAT 62.254 57.895 0.00 0.00 32.16 2.57
5515 8692 2.045536 CCTCCCTGCAACTGCCTC 60.046 66.667 0.00 0.00 41.18 4.70
5537 8714 5.241506 CCAACTGTATGTGTCAGGTTCATTT 59.758 40.000 0.00 0.00 37.25 2.32
5549 8726 2.859165 ACTCCACCCAACTGTATGTG 57.141 50.000 0.00 0.00 0.00 3.21
5550 8727 4.986054 TTTACTCCACCCAACTGTATGT 57.014 40.909 0.00 0.00 0.00 2.29
5551 8728 6.350110 CCATTTTTACTCCACCCAACTGTATG 60.350 42.308 0.00 0.00 0.00 2.39
5552 8729 5.714806 CCATTTTTACTCCACCCAACTGTAT 59.285 40.000 0.00 0.00 0.00 2.29
5559 8736 4.290985 TGATCTCCATTTTTACTCCACCCA 59.709 41.667 0.00 0.00 0.00 4.51
5580 8757 6.549364 ACAACCTCCACACTATCAAAAATTGA 59.451 34.615 0.00 0.00 45.01 2.57
5581 8758 6.748132 ACAACCTCCACACTATCAAAAATTG 58.252 36.000 0.00 0.00 0.00 2.32
5583 8760 6.738453 GCAACAACCTCCACACTATCAAAAAT 60.738 38.462 0.00 0.00 0.00 1.82
5584 8761 5.451242 GCAACAACCTCCACACTATCAAAAA 60.451 40.000 0.00 0.00 0.00 1.94
5595 8772 1.109323 AAGGCAGCAACAACCTCCAC 61.109 55.000 0.00 0.00 31.86 4.02
5620 8797 7.768120 CAGAAGCTATTGAAGAAGAGTAACCAT 59.232 37.037 0.00 0.00 0.00 3.55
5671 8848 6.573434 TGACATGAGTAAAGTCAAGCGATAT 58.427 36.000 0.00 0.00 39.15 1.63
5672 8849 5.961272 TGACATGAGTAAAGTCAAGCGATA 58.039 37.500 0.00 0.00 39.15 2.92
5673 8850 4.820897 TGACATGAGTAAAGTCAAGCGAT 58.179 39.130 0.00 0.00 39.15 4.58
5675 8852 4.867047 AGATGACATGAGTAAAGTCAAGCG 59.133 41.667 0.00 0.00 44.47 4.68
5720 8935 5.105997 GCCAGTTCATGAGCTACTTGATTTT 60.106 40.000 12.11 0.00 33.71 1.82
5776 8991 0.617413 CTGAGGCAGTGTCCTTCCAT 59.383 55.000 7.43 0.00 36.38 3.41
5788 9003 4.225942 AGAGGAATAAACACATCTGAGGCA 59.774 41.667 0.00 0.00 0.00 4.75
5795 9010 9.937175 GCTTACAATAAGAGGAATAAACACATC 57.063 33.333 0.00 0.00 0.00 3.06
5801 9016 7.715249 AGCATCGCTTACAATAAGAGGAATAAA 59.285 33.333 0.00 0.00 33.89 1.40
5816 9031 2.708386 AGGATCGTAGCATCGCTTAC 57.292 50.000 0.00 0.00 40.44 2.34
5826 9041 9.542462 TCCTTTATTCATTTGTAAGGATCGTAG 57.458 33.333 0.00 0.00 39.43 3.51
6032 10014 9.875675 GTAATGATGTAGAAGATTCATTTCTGC 57.124 33.333 2.71 0.00 39.07 4.26
6039 10021 7.981789 GTCTGTGGTAATGATGTAGAAGATTCA 59.018 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.