Multiple sequence alignment - TraesCS5A01G094300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G094300 chr5A 100.000 9166 0 0 1 9166 130528188 130537353 0.000000e+00 16927.0
1 TraesCS5A01G094300 chr5A 93.243 74 5 0 5021 5094 340131778 340131705 9.730000e-20 110.0
2 TraesCS5A01G094300 chr5A 93.151 73 5 0 5021 5093 404227727 404227799 3.500000e-19 108.0
3 TraesCS5A01G094300 chr5A 82.677 127 17 5 4970 5093 602332270 602332146 3.500000e-19 108.0
4 TraesCS5A01G094300 chr5A 94.595 37 2 0 1818 1854 130528818 130528854 3.570000e-04 58.4
5 TraesCS5A01G094300 chr5A 94.595 37 2 0 631 667 130530005 130530041 3.570000e-04 58.4
6 TraesCS5A01G094300 chr5D 96.978 4335 80 16 631 4940 120332231 120336539 0.000000e+00 7232.0
7 TraesCS5A01G094300 chr5D 99.083 1854 11 3 5094 6943 120336531 120338382 0.000000e+00 3325.0
8 TraesCS5A01G094300 chr5D 96.617 1212 37 1 7183 8390 120339640 120340851 0.000000e+00 2008.0
9 TraesCS5A01G094300 chr5D 90.235 809 37 15 8389 9164 120340886 120341685 0.000000e+00 1018.0
10 TraesCS5A01G094300 chr5D 83.578 408 30 20 68 449 437459022 437458626 1.890000e-91 348.0
11 TraesCS5A01G094300 chr5D 100.000 128 0 0 6936 7063 120339405 120339532 4.280000e-58 237.0
12 TraesCS5A01G094300 chr5D 88.356 146 5 5 4939 5073 557197320 557197464 2.050000e-36 165.0
13 TraesCS5A01G094300 chr5D 94.595 37 2 0 631 667 120333405 120333441 3.570000e-04 58.4
14 TraesCS5A01G094300 chr5B 95.845 3971 119 15 690 4629 133585986 133589941 0.000000e+00 6377.0
15 TraesCS5A01G094300 chr5B 95.550 2000 61 13 5094 7067 133591027 133593024 0.000000e+00 3175.0
16 TraesCS5A01G094300 chr5B 94.019 1070 43 7 7327 8390 133593026 133594080 0.000000e+00 1602.0
17 TraesCS5A01G094300 chr5B 88.358 816 46 12 8389 9164 133594116 133594922 0.000000e+00 935.0
18 TraesCS5A01G094300 chr5B 97.799 318 7 0 4623 4940 133590718 133591035 4.840000e-152 549.0
19 TraesCS5A01G094300 chr5B 82.677 127 15 6 4938 5060 235766778 235766655 1.260000e-18 106.0
20 TraesCS5A01G094300 chr5B 95.122 41 1 1 8981 9020 406172775 406172735 7.680000e-06 63.9
21 TraesCS5A01G094300 chr5B 93.023 43 0 3 8980 9020 704452702 704452661 9.940000e-05 60.2
22 TraesCS5A01G094300 chr5B 94.595 37 2 0 631 667 133587120 133587156 3.570000e-04 58.4
23 TraesCS5A01G094300 chr6B 90.625 480 23 7 171 628 583508879 583509358 1.310000e-172 617.0
24 TraesCS5A01G094300 chr6B 92.032 251 17 3 7069 7317 715838669 715838420 5.270000e-92 350.0
25 TraesCS5A01G094300 chr6B 87.313 268 32 2 7069 7334 262375807 262375540 1.160000e-78 305.0
26 TraesCS5A01G094300 chr6B 79.303 459 49 26 14 436 658405743 658406191 7.010000e-71 279.0
27 TraesCS5A01G094300 chr6B 86.979 192 3 7 4931 5100 438924944 438924753 7.260000e-46 196.0
28 TraesCS5A01G094300 chr6B 87.640 178 1 1 4938 5094 438927449 438927626 4.370000e-43 187.0
29 TraesCS5A01G094300 chr6B 87.571 177 1 1 4939 5094 289693810 289693986 1.570000e-42 185.0
30 TraesCS5A01G094300 chr6B 87.429 175 1 1 4940 5093 239363452 239363626 2.030000e-41 182.0
31 TraesCS5A01G094300 chr6B 96.053 76 3 0 1 76 583508346 583508421 3.480000e-24 124.0
32 TraesCS5A01G094300 chr6B 92.857 42 1 2 8980 9020 416897314 416897354 9.940000e-05 60.2
33 TraesCS5A01G094300 chr3B 88.958 480 31 1 171 628 1021753 1022232 2.870000e-159 573.0
34 TraesCS5A01G094300 chr3B 97.368 76 2 0 4 79 1021550 1021625 7.470000e-26 130.0
35 TraesCS5A01G094300 chr3B 88.636 88 9 1 1 88 597425686 597425600 1.260000e-18 106.0
36 TraesCS5A01G094300 chr3B 100.000 54 0 0 79 132 1021695 1021748 5.860000e-17 100.0
37 TraesCS5A01G094300 chr3B 92.683 41 1 2 8979 9017 520448052 520448012 3.570000e-04 58.4
38 TraesCS5A01G094300 chr2B 82.448 678 48 28 1 627 424521601 424522258 2.270000e-145 527.0
39 TraesCS5A01G094300 chr2B 92.982 171 1 2 4938 5098 291612707 291612876 1.190000e-58 239.0
40 TraesCS5A01G094300 chr7B 82.047 557 53 25 108 630 657610466 657611009 1.830000e-116 431.0
41 TraesCS5A01G094300 chr7B 88.390 267 24 5 7069 7334 383859402 383859142 1.920000e-81 315.0
42 TraesCS5A01G094300 chr7B 85.567 194 19 4 1 186 551485819 551486011 2.610000e-45 195.0
43 TraesCS5A01G094300 chr7B 86.364 176 3 4 4940 5094 355727483 355727308 1.220000e-38 172.0
44 TraesCS5A01G094300 chr7B 92.308 78 5 1 5021 5098 516468064 516467988 9.730000e-20 110.0
45 TraesCS5A01G094300 chr7D 90.262 267 24 2 7069 7334 388720264 388719999 1.890000e-91 348.0
46 TraesCS5A01G094300 chr7D 89.205 176 19 0 456 631 69946859 69946684 4.310000e-53 220.0
47 TraesCS5A01G094300 chr7D 87.755 147 7 5 4936 5072 59938598 59938453 2.650000e-35 161.0
48 TraesCS5A01G094300 chr7D 90.625 64 5 1 4937 5000 116693747 116693809 5.900000e-12 84.2
49 TraesCS5A01G094300 chr7D 93.182 44 2 1 8978 9020 167359302 167359345 7.680000e-06 63.9
50 TraesCS5A01G094300 chr1B 90.458 262 24 1 7068 7328 597080081 597079820 2.450000e-90 344.0
51 TraesCS5A01G094300 chr1B 84.211 190 19 5 5 186 470719977 470719791 3.400000e-39 174.0
52 TraesCS5A01G094300 chr1B 92.308 78 5 1 5021 5098 288394559 288394635 9.730000e-20 110.0
53 TraesCS5A01G094300 chr3D 87.500 264 30 3 7069 7330 168354890 168354628 1.500000e-77 302.0
54 TraesCS5A01G094300 chr3D 83.099 71 8 4 8952 9020 25199307 25199375 2.760000e-05 62.1
55 TraesCS5A01G094300 chr3D 92.857 42 2 1 8979 9019 379684661 379684620 9.940000e-05 60.2
56 TraesCS5A01G094300 chr1A 87.405 262 32 1 7069 7329 31856420 31856681 5.380000e-77 300.0
57 TraesCS5A01G094300 chr1A 86.447 273 34 3 7061 7332 397004784 397005054 6.960000e-76 296.0
58 TraesCS5A01G094300 chr1A 78.197 477 51 27 1 438 35565105 35565567 1.180000e-63 255.0
59 TraesCS5A01G094300 chr1A 95.833 72 1 2 4991 5060 372237703 372237774 2.090000e-21 115.0
60 TraesCS5A01G094300 chr1A 93.333 75 5 0 5021 5095 97954984 97954910 2.710000e-20 111.0
61 TraesCS5A01G094300 chr1A 91.892 74 6 0 5021 5094 333878796 333878723 4.530000e-18 104.0
62 TraesCS5A01G094300 chr1A 87.952 83 9 1 5021 5103 554528505 554528424 7.580000e-16 97.1
63 TraesCS5A01G094300 chr1A 87.654 81 4 4 4934 5011 99155049 99154972 1.270000e-13 89.8
64 TraesCS5A01G094300 chr1A 100.000 36 0 0 4940 4975 372237464 372237499 5.940000e-07 67.6
65 TraesCS5A01G094300 chr1A 91.667 48 4 0 5021 5068 398457041 398456994 5.940000e-07 67.6
66 TraesCS5A01G094300 chr4D 78.947 475 46 33 1 436 459190241 459189782 3.260000e-69 274.0
67 TraesCS5A01G094300 chr4D 88.764 178 20 0 456 633 486302348 486302525 1.550000e-52 219.0
68 TraesCS5A01G094300 chr4D 84.571 175 27 0 456 630 486304247 486304421 3.400000e-39 174.0
69 TraesCS5A01G094300 chr7A 94.512 164 6 1 467 627 7965842 7966005 5.500000e-62 250.0
70 TraesCS5A01G094300 chr7A 93.902 164 7 1 467 627 8105060 8105223 2.560000e-60 244.0
71 TraesCS5A01G094300 chr7A 97.101 138 2 2 4936 5072 467427155 467427019 1.990000e-56 231.0
72 TraesCS5A01G094300 chr4B 100.000 122 0 0 4939 5060 465734869 465734990 9.260000e-55 226.0
73 TraesCS5A01G094300 chr4B 86.441 177 2 2 4940 5094 422776375 422776551 3.400000e-39 174.0
74 TraesCS5A01G094300 chr4B 89.362 47 2 3 8975 9020 492210782 492210826 1.000000e-03 56.5
75 TraesCS5A01G094300 chr4B 85.714 56 2 5 8964 9017 582368269 582368320 5.000000e-03 54.7
76 TraesCS5A01G094300 chr2D 88.000 175 19 2 456 628 469109563 469109737 1.210000e-48 206.0
77 TraesCS5A01G094300 chr2D 88.028 142 15 2 295 436 617447675 617447814 5.690000e-37 167.0
78 TraesCS5A01G094300 chrUn 87.429 175 22 0 456 630 96551526 96551352 1.560000e-47 202.0
79 TraesCS5A01G094300 chrUn 84.536 194 18 6 1 186 96551973 96551784 2.030000e-41 182.0
80 TraesCS5A01G094300 chr3A 87.500 176 1 1 4939 5093 217823792 217823617 5.650000e-42 183.0
81 TraesCS5A01G094300 chr3A 94.845 97 3 2 4925 5020 734007022 734007117 5.730000e-32 150.0
82 TraesCS5A01G094300 chr6A 87.429 175 1 1 4940 5093 111742719 111742545 2.030000e-41 182.0
83 TraesCS5A01G094300 chr6A 90.840 131 2 1 4940 5060 609256051 609256181 5.690000e-37 167.0
84 TraesCS5A01G094300 chr6A 93.243 74 5 0 5021 5094 272125379 272125306 9.730000e-20 110.0
85 TraesCS5A01G094300 chr6A 91.781 73 6 0 5021 5093 392939459 392939387 1.630000e-17 102.0
86 TraesCS5A01G094300 chr6A 80.882 136 19 6 4963 5095 201548992 201549123 5.860000e-17 100.0
87 TraesCS5A01G094300 chr4A 87.429 175 1 1 4940 5093 29159037 29158863 2.030000e-41 182.0
88 TraesCS5A01G094300 chr4A 96.203 79 3 0 4942 5020 92743682 92743760 7.470000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G094300 chr5A 130528188 130537353 9165 False 16927.000000 16927 100.000000 1 9166 1 chr5A.!!$F1 9165
1 TraesCS5A01G094300 chr5D 120332231 120341685 9454 False 2313.066667 7232 96.251333 631 9164 6 chr5D.!!$F2 8533
2 TraesCS5A01G094300 chr5B 133585986 133594922 8936 False 2116.066667 6377 94.361000 631 9164 6 chr5B.!!$F1 8533
3 TraesCS5A01G094300 chr6B 583508346 583509358 1012 False 370.500000 617 93.339000 1 628 2 chr6B.!!$F6 627
4 TraesCS5A01G094300 chr3B 1021550 1022232 682 False 267.666667 573 95.442000 4 628 3 chr3B.!!$F1 624
5 TraesCS5A01G094300 chr2B 424521601 424522258 657 False 527.000000 527 82.448000 1 627 1 chr2B.!!$F2 626
6 TraesCS5A01G094300 chr7B 657610466 657611009 543 False 431.000000 431 82.047000 108 630 1 chr7B.!!$F2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 1119 1.001406 AGAAACCCTTGTGAGCGAGAG 59.999 52.381 0.00 0.0 0.00 3.20 F
892 1356 1.430992 TCTTTCTCGGTTCCCAGGTT 58.569 50.000 0.00 0.0 0.00 3.50 F
1005 1469 2.279451 CGCTCGCGATCCATGGAA 60.279 61.111 20.67 0.0 42.83 3.53 F
3514 3992 1.494960 TCTGTTTGGCCCAAAAAGCT 58.505 45.000 19.86 0.0 38.26 3.74 F
4969 6235 1.134694 GGCGACGCCTTGCTTTAAG 59.865 57.895 31.30 0.0 46.69 1.85 F
5083 6349 0.743345 GTCGCCTTATGGACGCCTTT 60.743 55.000 0.00 0.0 34.50 3.11 F
5084 6350 0.825410 TCGCCTTATGGACGCCTTTA 59.175 50.000 0.00 0.0 34.50 1.85 F
7712 10076 0.897621 GGGTCCAAATTGAAGCCCTG 59.102 55.000 10.59 0.0 33.58 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1968 2.614057 ACTCGCTAAAAGTGGCATATGC 59.386 45.455 19.79 19.79 41.14 3.14 R
2310 2776 3.261897 TGTGCTTCTTTAGAGGAAGAGGG 59.738 47.826 7.52 0.00 41.71 4.30 R
3723 4202 6.662755 AGCCCATATGATGAAACTTACTTCA 58.337 36.000 3.65 0.00 39.56 3.02 R
5064 6330 0.743345 AAAGGCGTCCATAAGGCGAC 60.743 55.000 5.25 2.38 41.05 5.19 R
7073 9403 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30 R
7712 10076 0.687354 TGCCCTCCAGTTCTTGTCTC 59.313 55.000 0.00 0.00 0.00 3.36 R
7731 10095 1.141881 CCTCTATTCGCCGTGCTGT 59.858 57.895 0.00 0.00 0.00 4.40 R
8791 11202 1.004044 AGGTGTTCCATCTGAAGCAGG 59.996 52.381 0.00 0.00 32.37 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.545265 GCAGCACATATTGAAGTAAAAATTGGA 59.455 33.333 0.00 0.00 0.00 3.53
66 67 4.263068 GGATAACCATGGATCTGGGTAGTG 60.263 50.000 21.47 0.00 41.69 2.74
168 567 6.549433 AGATATACAAACGGGTAGTGGAAA 57.451 37.500 0.00 0.00 0.00 3.13
169 568 6.343703 AGATATACAAACGGGTAGTGGAAAC 58.656 40.000 0.00 0.00 0.00 2.78
201 610 2.892425 GCCGATCCAGACCTTGCG 60.892 66.667 0.00 0.00 0.00 4.85
233 642 3.137459 CGCTCCCTGCTCTCTCGT 61.137 66.667 0.00 0.00 40.11 4.18
350 777 1.664306 GACGGGAGGAACGTGAAGT 59.336 57.895 0.00 0.00 45.68 3.01
411 838 3.399181 GATGTGGGAGGGTGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
522 971 3.390967 TGAGCGAATATTCCATTCCCTGA 59.609 43.478 9.87 0.00 0.00 3.86
527 976 4.262036 CGAATATTCCATTCCCTGAGACGA 60.262 45.833 9.87 0.00 0.00 4.20
541 990 2.632996 TGAGACGAGTGGGTTCTGATTT 59.367 45.455 0.00 0.00 0.00 2.17
648 1097 1.376553 GAGCTTGTGAGAGGTGCCC 60.377 63.158 0.00 0.00 0.00 5.36
669 1118 1.048601 AGAAACCCTTGTGAGCGAGA 58.951 50.000 0.00 0.00 0.00 4.04
670 1119 1.001406 AGAAACCCTTGTGAGCGAGAG 59.999 52.381 0.00 0.00 0.00 3.20
819 1277 2.671963 GGTTGCTTCCCCGTCCAC 60.672 66.667 0.00 0.00 0.00 4.02
892 1356 1.430992 TCTTTCTCGGTTCCCAGGTT 58.569 50.000 0.00 0.00 0.00 3.50
896 1360 2.314071 TCTCGGTTCCCAGGTTAGAA 57.686 50.000 0.00 0.00 0.00 2.10
968 1432 3.119919 CCTATACGATCCGGCTAACTGTC 60.120 52.174 0.00 0.00 0.00 3.51
1005 1469 2.279451 CGCTCGCGATCCATGGAA 60.279 61.111 20.67 0.00 42.83 3.53
1212 1676 9.656323 TCTAGTCTCATAGGGTGTTATGTATTT 57.344 33.333 0.00 0.00 33.66 1.40
1304 1768 4.911514 TGATGCCATGATTTCATCACAG 57.088 40.909 12.56 0.00 43.01 3.66
1502 1968 5.389859 TGAAAAACATAGCACCTGATTGG 57.610 39.130 0.00 0.00 42.93 3.16
1684 2150 6.558775 AGATGTCTTTTGGAGCTATGGGTATA 59.441 38.462 0.00 0.00 0.00 1.47
2310 2776 3.005472 GGTTTAGCACCAACCTCTTTTCC 59.995 47.826 4.82 0.00 46.42 3.13
2614 3082 1.967066 TCCTCTATCTTAGGCTGCAGC 59.033 52.381 30.88 30.88 41.14 5.25
3077 3553 5.715439 TGTTCAGGTGATTATCCAGGAAT 57.285 39.130 0.00 0.00 0.00 3.01
3514 3992 1.494960 TCTGTTTGGCCCAAAAAGCT 58.505 45.000 19.86 0.00 38.26 3.74
3828 4307 1.541368 TGGGCCCCTGTAGCTCTTT 60.541 57.895 22.27 0.00 0.00 2.52
3969 4448 2.762535 TGGCAGCTTGGTACTAAGAC 57.237 50.000 21.90 12.91 0.00 3.01
4070 4549 3.235200 AGCTATAATCCTGCGAACCTCT 58.765 45.455 0.00 0.00 0.00 3.69
4296 4779 4.690748 GCTAAATTTTTGGTCTCCTTTGGC 59.309 41.667 0.00 0.00 0.00 4.52
4302 4785 4.314522 TTTGGTCTCCTTTGGCATATCA 57.685 40.909 0.00 0.00 0.00 2.15
4782 6048 2.248280 ACGCACTATTCAACACACCA 57.752 45.000 0.00 0.00 0.00 4.17
4787 6053 4.268644 CGCACTATTCAACACACCAGATAG 59.731 45.833 0.00 0.00 0.00 2.08
4933 6199 6.154021 CCACCATTCTCCTCTTCAAATTTGAT 59.846 38.462 21.10 0.61 37.00 2.57
4934 6200 7.340232 CCACCATTCTCCTCTTCAAATTTGATA 59.660 37.037 21.10 11.74 37.00 2.15
4935 6201 8.910944 CACCATTCTCCTCTTCAAATTTGATAT 58.089 33.333 21.10 3.55 37.00 1.63
4940 6206 9.857656 TTCTCCTCTTCAAATTTGATATATGCT 57.142 29.630 21.10 0.00 37.00 3.79
4954 6220 9.891828 TTTGATATATGCTATGTTTTTAAGGCG 57.108 29.630 0.00 0.00 0.00 5.52
4955 6221 8.840833 TGATATATGCTATGTTTTTAAGGCGA 57.159 30.769 0.00 0.00 0.00 5.54
4956 6222 8.717821 TGATATATGCTATGTTTTTAAGGCGAC 58.282 33.333 0.00 0.00 0.00 5.19
4957 6223 3.733024 TGCTATGTTTTTAAGGCGACG 57.267 42.857 0.00 0.00 0.00 5.12
4958 6224 2.159626 TGCTATGTTTTTAAGGCGACGC 60.160 45.455 12.43 12.43 0.00 5.19
4968 6234 3.259930 GGCGACGCCTTGCTTTAA 58.740 55.556 31.30 0.00 46.69 1.52
4969 6235 1.134694 GGCGACGCCTTGCTTTAAG 59.865 57.895 31.30 0.00 46.69 1.85
4977 6243 1.508088 CTTGCTTTAAGGCGCTGGG 59.492 57.895 7.64 0.00 32.56 4.45
4978 6244 1.937546 CTTGCTTTAAGGCGCTGGGG 61.938 60.000 7.64 0.00 32.56 4.96
4979 6245 3.140814 GCTTTAAGGCGCTGGGGG 61.141 66.667 7.64 0.00 0.00 5.40
5081 6347 2.499685 GTCGCCTTATGGACGCCT 59.500 61.111 0.00 0.00 34.50 5.52
5082 6348 1.153429 GTCGCCTTATGGACGCCTT 60.153 57.895 0.00 0.00 34.50 4.35
5083 6349 0.743345 GTCGCCTTATGGACGCCTTT 60.743 55.000 0.00 0.00 34.50 3.11
5084 6350 0.825410 TCGCCTTATGGACGCCTTTA 59.175 50.000 0.00 0.00 34.50 1.85
5085 6351 1.207570 TCGCCTTATGGACGCCTTTAA 59.792 47.619 0.00 0.00 34.50 1.52
5086 6352 2.011222 CGCCTTATGGACGCCTTTAAA 58.989 47.619 0.00 0.00 34.57 1.52
5087 6353 2.420722 CGCCTTATGGACGCCTTTAAAA 59.579 45.455 0.00 0.00 34.57 1.52
5088 6354 3.729762 CGCCTTATGGACGCCTTTAAAAC 60.730 47.826 0.00 0.00 34.57 2.43
5089 6355 3.191791 GCCTTATGGACGCCTTTAAAACA 59.808 43.478 0.00 0.00 34.57 2.83
5090 6356 4.142249 GCCTTATGGACGCCTTTAAAACAT 60.142 41.667 0.00 0.00 34.57 2.71
5091 6357 5.066764 GCCTTATGGACGCCTTTAAAACATA 59.933 40.000 0.00 0.00 34.57 2.29
5092 6358 6.725246 CCTTATGGACGCCTTTAAAACATAG 58.275 40.000 0.00 0.00 34.57 2.23
5093 6359 6.238648 CCTTATGGACGCCTTTAAAACATAGG 60.239 42.308 0.00 0.00 34.57 2.57
5094 6360 4.289238 TGGACGCCTTTAAAACATAGGA 57.711 40.909 0.00 0.00 0.00 2.94
6320 7592 4.956085 TGGATCTCTTCAGTCGAACAAAA 58.044 39.130 0.00 0.00 0.00 2.44
6794 8067 3.947868 TGCTCAAGCTTAGCTGAAAGAT 58.052 40.909 20.93 0.00 39.62 2.40
7067 9397 7.308770 CCTGCAAAACTCAATATCACTGAGAAA 60.309 37.037 9.41 0.00 42.51 2.52
7069 9399 9.230122 TGCAAAACTCAATATCACTGAGAAATA 57.770 29.630 9.41 0.00 42.51 1.40
7070 9400 9.495754 GCAAAACTCAATATCACTGAGAAATAC 57.504 33.333 9.41 0.00 42.51 1.89
7073 9403 9.606631 AAACTCAATATCACTGAGAAATACTCC 57.393 33.333 9.41 0.00 42.51 3.85
7074 9404 7.731054 ACTCAATATCACTGAGAAATACTCCC 58.269 38.462 9.41 0.00 42.51 4.30
7076 9406 7.957002 TCAATATCACTGAGAAATACTCCCTC 58.043 38.462 0.00 0.00 44.34 4.30
7077 9407 6.926630 ATATCACTGAGAAATACTCCCTCC 57.073 41.667 0.00 0.00 44.34 4.30
7078 9408 3.024547 TCACTGAGAAATACTCCCTCCG 58.975 50.000 0.00 0.00 44.34 4.63
7079 9409 2.761208 CACTGAGAAATACTCCCTCCGT 59.239 50.000 0.00 0.00 44.34 4.69
7080 9410 3.195825 CACTGAGAAATACTCCCTCCGTT 59.804 47.826 0.00 0.00 44.34 4.44
7081 9411 3.838903 ACTGAGAAATACTCCCTCCGTTT 59.161 43.478 0.00 0.00 44.34 3.60
7082 9412 4.081586 ACTGAGAAATACTCCCTCCGTTTC 60.082 45.833 0.00 0.00 44.34 2.78
7083 9413 4.094476 TGAGAAATACTCCCTCCGTTTCT 58.906 43.478 0.00 0.00 44.34 2.52
7084 9414 4.530946 TGAGAAATACTCCCTCCGTTTCTT 59.469 41.667 0.00 0.00 44.34 2.52
7085 9415 5.012768 TGAGAAATACTCCCTCCGTTTCTTT 59.987 40.000 0.00 0.00 44.34 2.52
7086 9416 5.877491 AGAAATACTCCCTCCGTTTCTTTT 58.123 37.500 0.00 0.00 36.11 2.27
7087 9417 6.304624 AGAAATACTCCCTCCGTTTCTTTTT 58.695 36.000 0.00 0.00 36.11 1.94
7088 9418 7.455891 AGAAATACTCCCTCCGTTTCTTTTTA 58.544 34.615 0.00 0.00 36.11 1.52
7089 9419 7.389884 AGAAATACTCCCTCCGTTTCTTTTTAC 59.610 37.037 0.00 0.00 36.11 2.01
7090 9420 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
7091 9421 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
7092 9422 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
7093 9423 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
7094 9424 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
7095 9425 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
7096 9426 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
7097 9427 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
7098 9428 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
7099 9429 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
7100 9430 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
7101 9431 7.010738 TCCGTTTCTTTTTACTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
7102 9432 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
7103 9433 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
7107 9437 9.391006 TCTTTTTACTCCGCATATAAGATTTGT 57.609 29.630 0.00 0.00 0.00 2.83
7110 9440 9.781834 TTTTACTCCGCATATAAGATTTGTTTG 57.218 29.630 0.00 0.00 0.00 2.93
7111 9441 8.725405 TTACTCCGCATATAAGATTTGTTTGA 57.275 30.769 0.00 0.00 0.00 2.69
7112 9442 7.624360 ACTCCGCATATAAGATTTGTTTGAA 57.376 32.000 0.00 0.00 0.00 2.69
7113 9443 7.697691 ACTCCGCATATAAGATTTGTTTGAAG 58.302 34.615 0.00 0.00 0.00 3.02
7114 9444 7.336931 ACTCCGCATATAAGATTTGTTTGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
7115 9445 7.693952 TCCGCATATAAGATTTGTTTGAAGTC 58.306 34.615 0.00 0.00 0.00 3.01
7116 9446 7.335673 TCCGCATATAAGATTTGTTTGAAGTCA 59.664 33.333 0.00 0.00 0.00 3.41
7117 9447 7.967854 CCGCATATAAGATTTGTTTGAAGTCAA 59.032 33.333 0.00 0.00 0.00 3.18
7118 9448 9.340695 CGCATATAAGATTTGTTTGAAGTCAAA 57.659 29.630 2.32 2.32 42.90 2.69
7340 9704 2.708325 GAGGGAGTATGAATGCTTCCCT 59.292 50.000 10.03 10.03 38.82 4.20
7524 9888 2.076863 CAGGTTGTGGTTGCTAGTAGC 58.923 52.381 15.56 15.56 42.82 3.58
7712 10076 0.897621 GGGTCCAAATTGAAGCCCTG 59.102 55.000 10.59 0.00 33.58 4.45
7731 10095 0.687354 GAGACAAGAACTGGAGGGCA 59.313 55.000 0.00 0.00 0.00 5.36
7756 10120 0.596083 CGGCGAATAGAGGTGCTCAG 60.596 60.000 0.00 0.00 32.06 3.35
7886 10250 0.392998 CCAACTACCGCCTTGATGCT 60.393 55.000 0.00 0.00 0.00 3.79
7925 10289 3.978164 GGAGGCAGTGCTCCCTAT 58.022 61.111 16.11 0.00 33.81 2.57
7932 10296 1.043116 CAGTGCTCCCTATCCGGACA 61.043 60.000 6.12 0.00 33.16 4.02
8049 10413 2.627515 AGTTGAGAAGCTGAGTGCAA 57.372 45.000 0.00 0.00 45.94 4.08
8126 10490 0.463295 CTGCCTTGCCAGATGACGAT 60.463 55.000 0.00 0.00 34.77 3.73
8144 10508 3.057946 ACGATGATGATGATGACGACGAT 60.058 43.478 0.00 0.00 0.00 3.73
8147 10511 4.305989 TGATGATGATGACGACGATGAA 57.694 40.909 0.00 0.00 0.00 2.57
8329 10697 3.873910 TGGATGCTAAGACTAAACTGCC 58.126 45.455 0.00 0.00 0.00 4.85
8333 10701 2.561419 TGCTAAGACTAAACTGCCGACT 59.439 45.455 0.00 0.00 0.00 4.18
8406 10817 8.232913 AGTAACTTGTAGCCTTTTCAAATGAA 57.767 30.769 0.00 0.00 0.00 2.57
8408 10819 6.959639 ACTTGTAGCCTTTTCAAATGAAGA 57.040 33.333 0.00 0.00 35.21 2.87
8409 10820 6.739112 ACTTGTAGCCTTTTCAAATGAAGAC 58.261 36.000 0.00 0.00 35.21 3.01
8411 10822 5.385198 TGTAGCCTTTTCAAATGAAGACCT 58.615 37.500 0.00 0.00 35.21 3.85
8419 10830 6.624352 TTTCAAATGAAGACCTGACTTGAG 57.376 37.500 0.00 0.00 35.21 3.02
8458 10869 7.482169 AATAAGTCATCTACACAGACAAGGA 57.518 36.000 0.00 0.00 34.80 3.36
8590 11001 9.132521 CAGTAAATCTTTCAAACATCAATCCAC 57.867 33.333 0.00 0.00 0.00 4.02
8619 11030 4.276678 ACAATGATTCACACACAGAACCTG 59.723 41.667 0.00 0.00 37.52 4.00
8725 11136 2.358737 AACTCGCCCCGCTTCTTG 60.359 61.111 0.00 0.00 0.00 3.02
8731 11142 1.791103 CGCCCCGCTTCTTGTTTTGA 61.791 55.000 0.00 0.00 0.00 2.69
8732 11143 0.387565 GCCCCGCTTCTTGTTTTGAA 59.612 50.000 0.00 0.00 0.00 2.69
8763 11174 0.618458 ATGAGGCTTCCTTGGCGTTA 59.382 50.000 0.00 0.00 31.76 3.18
8765 11176 1.359459 GAGGCTTCCTTGGCGTTACG 61.359 60.000 0.00 0.00 31.76 3.18
8824 11235 2.093447 GGAACACCTCGACCTGATCAAT 60.093 50.000 0.00 0.00 0.00 2.57
8825 11236 2.969628 ACACCTCGACCTGATCAATC 57.030 50.000 0.00 0.00 0.00 2.67
8826 11237 2.179427 ACACCTCGACCTGATCAATCA 58.821 47.619 0.00 0.00 35.16 2.57
8890 11322 8.669946 TTTATGTCAAAGTGTATGAAGTGTCA 57.330 30.769 0.00 0.00 38.41 3.58
8915 11347 4.514066 ACGATTTTGGGAGACTTTACACAC 59.486 41.667 0.00 0.00 0.00 3.82
8943 11375 5.268118 TGACGAATAAGAGTCTGATGCAT 57.732 39.130 0.00 0.00 38.16 3.96
8977 11409 2.824489 GGCCTAAGAAGCACCGGC 60.824 66.667 0.00 0.00 39.98 6.13
8997 11429 5.471257 CGGCATTCTATTCTAAGTACTCCC 58.529 45.833 0.00 0.00 0.00 4.30
9020 11452 5.392811 CCTCCGTCCCATAATATAAGACGTC 60.393 48.000 7.70 7.70 46.62 4.34
9021 11453 4.460382 TCCGTCCCATAATATAAGACGTCC 59.540 45.833 13.01 0.00 46.62 4.79
9022 11454 4.409570 CGTCCCATAATATAAGACGTCCG 58.590 47.826 13.01 0.00 43.89 4.79
9164 11618 1.108776 AGCCAAAATCATCATGCGCT 58.891 45.000 9.73 0.00 0.00 5.92
9165 11619 2.033675 CAGCCAAAATCATCATGCGCTA 59.966 45.455 9.73 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.073062 GCACTACCCAGATCCATGGTTAT 59.927 47.826 12.58 0.00 38.81 1.89
66 67 9.979270 GTTTCATATATATATGTGCTTCTGTGC 57.021 33.333 25.23 7.81 40.69 4.57
365 792 2.364970 CTCTCGATCTGCCTTCTCCATT 59.635 50.000 0.00 0.00 0.00 3.16
388 815 0.916358 CACCCTCCCACATCTCCCTT 60.916 60.000 0.00 0.00 0.00 3.95
411 838 3.217242 CAACTCCTTGCACTAGCGT 57.783 52.632 0.00 0.00 46.23 5.07
522 971 2.368875 ACAAATCAGAACCCACTCGTCT 59.631 45.455 0.00 0.00 0.00 4.18
527 976 3.139077 GTCGAACAAATCAGAACCCACT 58.861 45.455 0.00 0.00 0.00 4.00
541 990 1.467883 CCGCGTATGGTTAGTCGAACA 60.468 52.381 4.92 0.00 40.09 3.18
648 1097 2.231478 TCTCGCTCACAAGGGTTTCTAG 59.769 50.000 0.00 0.00 36.82 2.43
674 1123 2.759607 AGCAACCGTGGAAATGCTTCC 61.760 52.381 11.04 0.00 46.36 3.46
675 1124 0.598065 AGCAACCGTGGAAATGCTTC 59.402 50.000 11.04 0.00 46.36 3.86
676 1125 2.732289 AGCAACCGTGGAAATGCTT 58.268 47.368 11.04 0.31 46.36 3.91
801 1259 3.172106 TGGACGGGGAAGCAACCA 61.172 61.111 1.88 0.00 0.00 3.67
892 1356 1.688187 GGGAGGGAAGGCGGTTCTA 60.688 63.158 0.00 0.00 35.25 2.10
896 1360 3.330720 CTTGGGAGGGAAGGCGGT 61.331 66.667 0.00 0.00 0.00 5.68
968 1432 1.513158 CTGTGTGGAGTAGCGAGGG 59.487 63.158 0.00 0.00 0.00 4.30
1005 1469 0.464452 GAAGGTTGATCGACCGGGAT 59.536 55.000 23.85 13.10 44.62 3.85
1268 1732 0.108520 CATCACATTGGCCCAACTGC 60.109 55.000 0.00 0.00 0.00 4.40
1304 1768 1.398692 TCAAACTTGCTCCACCAACC 58.601 50.000 0.00 0.00 0.00 3.77
1502 1968 2.614057 ACTCGCTAAAAGTGGCATATGC 59.386 45.455 19.79 19.79 41.14 3.14
1684 2150 3.181418 ACCAAGGACCCAAGTGAAATGAT 60.181 43.478 0.00 0.00 0.00 2.45
2310 2776 3.261897 TGTGCTTCTTTAGAGGAAGAGGG 59.738 47.826 7.52 0.00 41.71 4.30
3723 4202 6.662755 AGCCCATATGATGAAACTTACTTCA 58.337 36.000 3.65 0.00 39.56 3.02
3828 4307 0.830444 AAGGGACTCACCGTACAGCA 60.830 55.000 0.00 0.00 38.49 4.41
3969 4448 6.511444 GCAAGAGAATCGAGATTTTGAGGATG 60.511 42.308 10.97 3.01 42.67 3.51
4070 4549 3.004629 CAGCAACAAATTCCTGTGCTACA 59.995 43.478 5.79 0.00 34.25 2.74
4328 4811 7.730364 TGTCTGTTCCATAAAGAGAAAACTC 57.270 36.000 0.00 0.00 38.85 3.01
4341 4824 3.770933 CCATTGGGATTTGTCTGTTCCAT 59.229 43.478 0.00 0.00 35.59 3.41
4933 6199 6.347079 GCGTCGCCTTAAAAACATAGCATATA 60.347 38.462 5.75 0.00 0.00 0.86
4934 6200 5.560183 GCGTCGCCTTAAAAACATAGCATAT 60.560 40.000 5.75 0.00 0.00 1.78
4935 6201 4.260456 GCGTCGCCTTAAAAACATAGCATA 60.260 41.667 5.75 0.00 0.00 3.14
4936 6202 3.486875 GCGTCGCCTTAAAAACATAGCAT 60.487 43.478 5.75 0.00 0.00 3.79
4937 6203 2.159626 GCGTCGCCTTAAAAACATAGCA 60.160 45.455 5.75 0.00 0.00 3.49
4938 6204 2.437626 GCGTCGCCTTAAAAACATAGC 58.562 47.619 5.75 0.00 0.00 2.97
4939 6205 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
4952 6218 4.745549 CTTAAAGCAAGGCGTCGC 57.254 55.556 9.22 9.22 0.00 5.19
4959 6225 1.508088 CCCAGCGCCTTAAAGCAAG 59.492 57.895 2.29 0.00 35.48 4.01
4960 6226 1.976474 CCCCAGCGCCTTAAAGCAA 60.976 57.895 2.29 0.00 35.48 3.91
4961 6227 2.361104 CCCCAGCGCCTTAAAGCA 60.361 61.111 2.29 0.00 35.48 3.91
4962 6228 3.140814 CCCCCAGCGCCTTAAAGC 61.141 66.667 2.29 0.00 0.00 3.51
5064 6330 0.743345 AAAGGCGTCCATAAGGCGAC 60.743 55.000 5.25 2.38 41.05 5.19
5065 6331 0.825410 TAAAGGCGTCCATAAGGCGA 59.175 50.000 5.25 0.00 39.71 5.54
5066 6332 1.658994 TTAAAGGCGTCCATAAGGCG 58.341 50.000 0.00 0.00 39.71 5.52
5067 6333 3.191791 TGTTTTAAAGGCGTCCATAAGGC 59.808 43.478 0.00 0.00 38.05 4.35
5068 6334 5.576447 ATGTTTTAAAGGCGTCCATAAGG 57.424 39.130 0.00 0.00 0.00 2.69
5069 6335 6.540914 TCCTATGTTTTAAAGGCGTCCATAAG 59.459 38.462 0.00 0.00 0.00 1.73
5070 6336 6.416415 TCCTATGTTTTAAAGGCGTCCATAA 58.584 36.000 0.00 0.00 0.00 1.90
5071 6337 5.991861 TCCTATGTTTTAAAGGCGTCCATA 58.008 37.500 0.00 0.00 0.00 2.74
5072 6338 4.850680 TCCTATGTTTTAAAGGCGTCCAT 58.149 39.130 0.00 0.00 0.00 3.41
5073 6339 4.289238 TCCTATGTTTTAAAGGCGTCCA 57.711 40.909 0.00 0.00 0.00 4.02
5074 6340 8.665685 CATATATCCTATGTTTTAAAGGCGTCC 58.334 37.037 0.00 0.00 0.00 4.79
5075 6341 8.175716 GCATATATCCTATGTTTTAAAGGCGTC 58.824 37.037 0.00 0.00 0.00 5.19
5076 6342 7.120726 GGCATATATCCTATGTTTTAAAGGCGT 59.879 37.037 0.00 0.00 0.00 5.68
5077 6343 7.336931 AGGCATATATCCTATGTTTTAAAGGCG 59.663 37.037 2.84 0.00 30.79 5.52
5078 6344 8.581253 AGGCATATATCCTATGTTTTAAAGGC 57.419 34.615 2.84 0.00 30.79 4.35
5079 6345 9.965902 AGAGGCATATATCCTATGTTTTAAAGG 57.034 33.333 4.33 0.00 33.24 3.11
5084 6350 8.664079 ACTGAAGAGGCATATATCCTATGTTTT 58.336 33.333 4.33 0.00 33.24 2.43
5085 6351 8.212259 ACTGAAGAGGCATATATCCTATGTTT 57.788 34.615 4.33 0.00 33.24 2.83
5086 6352 7.805083 ACTGAAGAGGCATATATCCTATGTT 57.195 36.000 4.33 0.78 33.24 2.71
5087 6353 7.805083 AACTGAAGAGGCATATATCCTATGT 57.195 36.000 4.33 0.00 33.24 2.29
5255 6521 5.536554 ACATGACATCTCGAACAATCAAC 57.463 39.130 0.00 0.00 0.00 3.18
6646 7919 7.666623 TCACCACATCATAATATAGAAGCGAA 58.333 34.615 0.00 0.00 0.00 4.70
6678 7951 4.823989 CCAATCAGGCCTCTATGGTTTAAG 59.176 45.833 0.00 0.00 38.35 1.85
6794 8067 3.449377 TGGCCATTCGTCATAGAGTAACA 59.551 43.478 0.00 0.00 0.00 2.41
7067 9397 6.370186 AGTAAAAAGAAACGGAGGGAGTAT 57.630 37.500 0.00 0.00 0.00 2.12
7069 9399 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
7070 9400 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
7071 9401 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
7072 9402 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
7073 9403 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
7074 9404 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
7076 9406 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
7077 9407 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
7081 9411 9.391006 ACAAATCTTATATGCGGAGTAAAAAGA 57.609 29.630 0.00 0.00 0.00 2.52
7084 9414 9.781834 CAAACAAATCTTATATGCGGAGTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
7085 9415 9.168451 TCAAACAAATCTTATATGCGGAGTAAA 57.832 29.630 0.00 0.00 0.00 2.01
7086 9416 8.725405 TCAAACAAATCTTATATGCGGAGTAA 57.275 30.769 0.00 0.00 0.00 2.24
7087 9417 8.725405 TTCAAACAAATCTTATATGCGGAGTA 57.275 30.769 0.00 0.00 0.00 2.59
7088 9418 7.336931 ACTTCAAACAAATCTTATATGCGGAGT 59.663 33.333 0.00 0.00 0.00 3.85
7089 9419 7.697691 ACTTCAAACAAATCTTATATGCGGAG 58.302 34.615 0.00 0.00 0.00 4.63
7090 9420 7.335673 TGACTTCAAACAAATCTTATATGCGGA 59.664 33.333 0.00 0.00 0.00 5.54
7091 9421 7.471721 TGACTTCAAACAAATCTTATATGCGG 58.528 34.615 0.00 0.00 0.00 5.69
7092 9422 8.894409 TTGACTTCAAACAAATCTTATATGCG 57.106 30.769 0.00 0.00 32.11 4.73
7306 9670 6.771573 TCATACTCCCTCCGTTTCTTTTTAA 58.228 36.000 0.00 0.00 0.00 1.52
7524 9888 3.119566 GGTAGAGTACGGTGTCCTTGAAG 60.120 52.174 0.00 0.00 0.00 3.02
7712 10076 0.687354 TGCCCTCCAGTTCTTGTCTC 59.313 55.000 0.00 0.00 0.00 3.36
7731 10095 1.141881 CCTCTATTCGCCGTGCTGT 59.858 57.895 0.00 0.00 0.00 4.40
7756 10120 5.597813 TTCGATCTGAGCTTTTTCAGTTC 57.402 39.130 3.26 4.06 43.96 3.01
7925 10289 4.574828 GCTTTTATTGCTTCTATGTCCGGA 59.425 41.667 0.00 0.00 0.00 5.14
7932 10296 4.354587 GCTTGCGCTTTTATTGCTTCTAT 58.645 39.130 9.73 0.00 0.00 1.98
8030 10394 2.492012 CTTGCACTCAGCTTCTCAACT 58.508 47.619 0.00 0.00 45.94 3.16
8126 10490 3.988379 TCATCGTCGTCATCATCATCA 57.012 42.857 0.00 0.00 0.00 3.07
8144 10508 5.924254 ACATTACTTTTCATCGTCGTCTTCA 59.076 36.000 0.00 0.00 0.00 3.02
8147 10511 5.227908 ACACATTACTTTTCATCGTCGTCT 58.772 37.500 0.00 0.00 0.00 4.18
8215 10579 2.062971 AGCCCACATCACCATGATTC 57.937 50.000 0.00 0.00 34.28 2.52
8315 10683 3.057033 GGTGAGTCGGCAGTTTAGTCTTA 60.057 47.826 0.00 0.00 0.00 2.10
8329 10697 6.649557 ACCAAATTAAACTAGAAGGTGAGTCG 59.350 38.462 0.00 0.00 0.00 4.18
8406 10817 9.793259 TTAATTTGATTAACTCAAGTCAGGTCT 57.207 29.630 0.00 0.00 44.48 3.85
8447 10858 5.009410 AGCTGATTTTCTTTCCTTGTCTGTG 59.991 40.000 0.00 0.00 0.00 3.66
8539 10950 2.715737 AGTCGACTGAGAGCAACTTC 57.284 50.000 19.30 0.00 0.00 3.01
8540 10951 4.013728 AGATAGTCGACTGAGAGCAACTT 58.986 43.478 28.12 0.00 0.00 2.66
8580 10991 3.127376 TCATTGTGCTTCGTGGATTGATG 59.873 43.478 0.00 0.00 0.00 3.07
8590 11001 3.228749 GTGTGTGAATCATTGTGCTTCG 58.771 45.455 0.00 0.00 0.00 3.79
8725 11136 9.343539 AGCCTCATAATCCTTAGTATTCAAAAC 57.656 33.333 0.00 0.00 0.00 2.43
8731 11142 7.880265 AGGAAGCCTCATAATCCTTAGTATT 57.120 36.000 0.00 0.00 39.23 1.89
8765 11176 1.227292 GACGGCGGAAGGAAGATCC 60.227 63.158 13.24 0.00 36.58 3.36
8791 11202 1.004044 AGGTGTTCCATCTGAAGCAGG 59.996 52.381 0.00 0.00 32.37 4.85
8824 11235 6.997655 ACACTCATGATCTTACTGTTTCTGA 58.002 36.000 0.00 0.00 0.00 3.27
8825 11236 7.386025 TGAACACTCATGATCTTACTGTTTCTG 59.614 37.037 0.00 0.00 0.00 3.02
8826 11237 7.445121 TGAACACTCATGATCTTACTGTTTCT 58.555 34.615 0.00 0.00 0.00 2.52
8827 11238 7.148507 CCTGAACACTCATGATCTTACTGTTTC 60.149 40.741 0.00 0.00 0.00 2.78
8834 11245 6.211384 TCTGTTCCTGAACACTCATGATCTTA 59.789 38.462 8.58 0.00 45.42 2.10
8890 11322 4.995487 GTGTAAAGTCTCCCAAAATCGTCT 59.005 41.667 0.00 0.00 0.00 4.18
8915 11347 9.071221 GCATCAGACTCTTATTCGTCATAATAG 57.929 37.037 0.00 0.00 32.68 1.73
8943 11375 1.340991 GGCCAGCATAGGTTTTCAGGA 60.341 52.381 0.00 0.00 0.00 3.86
8977 11409 6.490721 ACGGAGGGAGTACTTAGAATAGAATG 59.509 42.308 0.00 0.00 0.00 2.67
9020 11452 3.684788 CAGGTATTTGAGACCTTGAACGG 59.315 47.826 0.00 0.00 45.40 4.44
9021 11453 4.315803 ACAGGTATTTGAGACCTTGAACG 58.684 43.478 0.00 0.00 45.40 3.95
9022 11454 5.351740 GCTACAGGTATTTGAGACCTTGAAC 59.648 44.000 0.00 0.00 45.40 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.