Multiple sequence alignment - TraesCS5A01G094200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G094200 chr5A 100.000 3627 0 0 1 3627 130287969 130284343 0.000000e+00 6698.0
1 TraesCS5A01G094200 chr5A 87.814 279 32 2 79 357 25997179 25997455 3.490000e-85 326.0
2 TraesCS5A01G094200 chr5D 93.359 2108 83 21 792 2890 119915790 119913731 0.000000e+00 3064.0
3 TraesCS5A01G094200 chr5D 90.448 335 28 2 3295 3626 119911520 119911187 4.300000e-119 438.0
4 TraesCS5A01G094200 chr5D 82.831 431 49 13 384 794 119916517 119916092 2.660000e-96 363.0
5 TraesCS5A01G094200 chr5D 88.172 279 31 2 79 357 119929523 119929247 7.510000e-87 331.0
6 TraesCS5A01G094200 chr5D 87.455 279 31 4 79 357 213165949 213165675 5.840000e-83 318.0
7 TraesCS5A01G094200 chr5D 84.520 323 41 8 2881 3201 119911923 119911608 9.780000e-81 311.0
8 TraesCS5A01G094200 chr5D 89.655 58 5 1 3112 3168 15173480 15173537 5.020000e-09 73.1
9 TraesCS5A01G094200 chr5B 90.733 2223 105 34 957 3145 133419199 133417044 0.000000e+00 2870.0
10 TraesCS5A01G094200 chr5B 85.449 323 27 6 3308 3626 133417036 133416730 5.840000e-83 318.0
11 TraesCS5A01G094200 chr5B 97.333 75 2 0 853 927 133420257 133420183 1.060000e-25 128.0
12 TraesCS5A01G094200 chr2D 79.518 581 105 9 2058 2625 118552462 118553041 5.640000e-108 401.0
13 TraesCS5A01G094200 chr2D 87.857 280 30 4 79 357 241577774 241578050 3.490000e-85 326.0
14 TraesCS5A01G094200 chr2D 89.655 58 5 1 3112 3168 210461696 210461639 5.020000e-09 73.1
15 TraesCS5A01G094200 chr2D 87.931 58 6 1 3112 3168 257867994 257868051 2.340000e-07 67.6
16 TraesCS5A01G094200 chr2A 79.292 565 103 11 2058 2609 120462262 120462825 2.040000e-102 383.0
17 TraesCS5A01G094200 chr2A 88.172 279 31 2 79 357 617518145 617517869 7.510000e-87 331.0
18 TraesCS5A01G094200 chr2A 87.681 276 31 3 82 357 655591432 655591160 5.840000e-83 318.0
19 TraesCS5A01G094200 chr1D 88.214 280 31 2 79 358 106855206 106855483 2.090000e-87 333.0
20 TraesCS5A01G094200 chr6A 87.500 280 31 4 79 357 214152035 214151759 1.620000e-83 320.0
21 TraesCS5A01G094200 chr3D 87.455 279 32 3 79 357 446871010 446870735 5.840000e-83 318.0
22 TraesCS5A01G094200 chr3D 89.655 58 5 1 3112 3168 94911578 94911521 5.020000e-09 73.1
23 TraesCS5A01G094200 chr3D 87.931 58 6 1 3112 3168 423532807 423532750 2.340000e-07 67.6
24 TraesCS5A01G094200 chr4B 90.789 76 7 0 1531 1606 653720290 653720365 6.410000e-18 102.0
25 TraesCS5A01G094200 chr4B 89.655 58 5 1 3112 3168 415230365 415230308 5.020000e-09 73.1
26 TraesCS5A01G094200 chr4A 88.136 59 6 1 3111 3168 698165757 698165815 6.500000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G094200 chr5A 130284343 130287969 3626 True 6698.000000 6698 100.000000 1 3627 1 chr5A.!!$R1 3626
1 TraesCS5A01G094200 chr5D 119911187 119916517 5330 True 1044.000000 3064 87.789500 384 3626 4 chr5D.!!$R3 3242
2 TraesCS5A01G094200 chr5B 133416730 133420257 3527 True 1105.333333 2870 91.171667 853 3626 3 chr5B.!!$R1 2773
3 TraesCS5A01G094200 chr2D 118552462 118553041 579 False 401.000000 401 79.518000 2058 2625 1 chr2D.!!$F1 567
4 TraesCS5A01G094200 chr2A 120462262 120462825 563 False 383.000000 383 79.292000 2058 2609 1 chr2A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.105709 GAGGGGAGAGAGGAGGAAGG 60.106 65.0 0.0 0.0 0.00 3.46 F
48 49 0.105709 GGGGAGAGAGGAGGAAGGAG 60.106 65.0 0.0 0.0 0.00 3.69 F
49 50 0.105709 GGGAGAGAGGAGGAAGGAGG 60.106 65.0 0.0 0.0 0.00 4.30 F
381 382 0.106015 GCCCCAAGCCCTAATGTCAT 60.106 55.0 0.0 0.0 34.35 3.06 F
948 2237 0.249868 CCTTGCGTCCACTCAACTCA 60.250 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 2547 0.039618 GGAGTCTGGGCCCAAAATCA 59.960 55.0 26.02 5.45 0.00 2.57 R
1259 2548 0.039618 TGGAGTCTGGGCCCAAAATC 59.960 55.0 28.29 22.70 0.00 2.17 R
1261 2550 0.263172 TTTGGAGTCTGGGCCCAAAA 59.737 50.0 28.29 19.23 44.25 2.44 R
1504 2802 0.263468 TGTCCTCGTGGATATCCCCA 59.737 55.0 19.34 0.00 45.29 4.96 R
2745 4060 1.517242 TGCGATGCAACATACACACA 58.483 45.0 0.00 0.00 34.76 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.029809 AGCGAAAACGGGGAGGGG 62.030 66.667 0.00 0.00 0.00 4.79
19 20 3.324108 CGAAAACGGGGAGGGGGA 61.324 66.667 0.00 0.00 0.00 4.81
20 21 2.675371 GAAAACGGGGAGGGGGAG 59.325 66.667 0.00 0.00 0.00 4.30
21 22 2.939353 AAAACGGGGAGGGGGAGG 60.939 66.667 0.00 0.00 0.00 4.30
22 23 3.510432 AAAACGGGGAGGGGGAGGA 62.510 63.158 0.00 0.00 0.00 3.71
23 24 3.945064 AAACGGGGAGGGGGAGGAG 62.945 68.421 0.00 0.00 0.00 3.69
27 28 4.179599 GGGAGGGGGAGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
28 29 3.036959 GGAGGGGGAGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
29 30 2.612251 GAGGGGGAGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
30 31 3.039526 AGGGGGAGGAGGGAGAGG 61.040 72.222 0.00 0.00 0.00 3.69
31 32 4.179599 GGGGGAGGAGGGAGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
32 33 4.179599 GGGGAGGAGGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
33 34 3.036959 GGGAGGAGGGAGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
34 35 2.612251 GGAGGAGGGAGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
35 36 2.015726 GGAGGAGGGAGAGGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
36 37 1.541672 GAGGAGGGAGAGGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
37 38 0.996762 GAGGAGGGAGAGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
38 39 0.998945 AGGAGGGAGAGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
39 40 1.541672 GAGGGAGAGGGGAGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
40 41 0.996762 GAGGGAGAGGGGAGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
41 42 0.998945 AGGGAGAGGGGAGAGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
42 43 1.541672 GGAGAGGGGAGAGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
43 44 0.996762 GGAGAGGGGAGAGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
44 45 0.930726 GAGAGGGGAGAGAGGAGGAA 59.069 60.000 0.00 0.00 0.00 3.36
45 46 0.933700 AGAGGGGAGAGAGGAGGAAG 59.066 60.000 0.00 0.00 0.00 3.46
46 47 0.105709 GAGGGGAGAGAGGAGGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
47 48 0.556380 AGGGGAGAGAGGAGGAAGGA 60.556 60.000 0.00 0.00 0.00 3.36
48 49 0.105709 GGGGAGAGAGGAGGAAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
49 50 0.105709 GGGAGAGAGGAGGAAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
50 51 0.930726 GGAGAGAGGAGGAAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
51 52 1.133482 GGAGAGAGGAGGAAGGAGGAG 60.133 61.905 0.00 0.00 0.00 3.69
52 53 0.933700 AGAGAGGAGGAAGGAGGAGG 59.066 60.000 0.00 0.00 0.00 4.30
53 54 0.930726 GAGAGGAGGAAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
54 55 0.933700 AGAGGAGGAAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
55 56 0.759060 GAGGAGGAAGGAGGAGGAGC 60.759 65.000 0.00 0.00 0.00 4.70
56 57 1.764454 GGAGGAAGGAGGAGGAGCC 60.764 68.421 0.00 0.00 0.00 4.70
57 58 1.002274 GAGGAAGGAGGAGGAGCCA 59.998 63.158 0.00 0.00 40.02 4.75
58 59 0.399806 GAGGAAGGAGGAGGAGCCAT 60.400 60.000 0.00 0.00 40.02 4.40
59 60 0.399806 AGGAAGGAGGAGGAGCCATC 60.400 60.000 0.00 0.00 40.02 3.51
60 61 0.692419 GGAAGGAGGAGGAGCCATCA 60.692 60.000 0.00 0.00 40.02 3.07
61 62 1.433121 GAAGGAGGAGGAGCCATCAT 58.567 55.000 0.00 0.00 40.02 2.45
62 63 2.614259 GAAGGAGGAGGAGCCATCATA 58.386 52.381 0.00 0.00 40.02 2.15
63 64 2.803285 AGGAGGAGGAGCCATCATAA 57.197 50.000 0.00 0.00 40.02 1.90
64 65 3.066208 AGGAGGAGGAGCCATCATAAA 57.934 47.619 0.00 0.00 40.02 1.40
65 66 3.397527 AGGAGGAGGAGCCATCATAAAA 58.602 45.455 0.00 0.00 40.02 1.52
66 67 3.986134 AGGAGGAGGAGCCATCATAAAAT 59.014 43.478 0.00 0.00 40.02 1.82
67 68 4.418190 AGGAGGAGGAGCCATCATAAAATT 59.582 41.667 0.00 0.00 40.02 1.82
68 69 5.103344 AGGAGGAGGAGCCATCATAAAATTT 60.103 40.000 0.00 0.00 40.02 1.82
69 70 5.242615 GGAGGAGGAGCCATCATAAAATTTC 59.757 44.000 0.00 0.00 40.02 2.17
70 71 6.023334 AGGAGGAGCCATCATAAAATTTCT 57.977 37.500 0.00 0.00 40.02 2.52
71 72 6.067350 AGGAGGAGCCATCATAAAATTTCTC 58.933 40.000 0.00 0.00 40.02 2.87
72 73 5.049129 GGAGGAGCCATCATAAAATTTCTCG 60.049 44.000 0.00 0.00 36.34 4.04
73 74 5.440610 AGGAGCCATCATAAAATTTCTCGT 58.559 37.500 0.00 0.00 0.00 4.18
74 75 5.297776 AGGAGCCATCATAAAATTTCTCGTG 59.702 40.000 0.00 0.00 0.00 4.35
75 76 5.066505 GGAGCCATCATAAAATTTCTCGTGT 59.933 40.000 0.00 0.00 0.00 4.49
76 77 5.883661 AGCCATCATAAAATTTCTCGTGTG 58.116 37.500 0.00 0.00 0.00 3.82
77 78 5.647658 AGCCATCATAAAATTTCTCGTGTGA 59.352 36.000 0.00 0.00 0.00 3.58
78 79 6.150976 AGCCATCATAAAATTTCTCGTGTGAA 59.849 34.615 0.00 0.00 0.00 3.18
79 80 6.251376 GCCATCATAAAATTTCTCGTGTGAAC 59.749 38.462 0.00 0.00 0.00 3.18
80 81 7.530010 CCATCATAAAATTTCTCGTGTGAACT 58.470 34.615 0.00 0.00 0.00 3.01
81 82 7.693951 CCATCATAAAATTTCTCGTGTGAACTC 59.306 37.037 0.00 0.00 0.00 3.01
82 83 7.129109 TCATAAAATTTCTCGTGTGAACTCC 57.871 36.000 0.00 0.00 0.00 3.85
83 84 4.468095 AAAATTTCTCGTGTGAACTCCG 57.532 40.909 0.00 0.00 0.00 4.63
84 85 2.814280 ATTTCTCGTGTGAACTCCGT 57.186 45.000 0.00 0.00 0.00 4.69
85 86 2.589798 TTTCTCGTGTGAACTCCGTT 57.410 45.000 0.00 0.00 0.00 4.44
86 87 2.129823 TTCTCGTGTGAACTCCGTTC 57.870 50.000 0.00 0.00 42.26 3.95
87 88 1.315690 TCTCGTGTGAACTCCGTTCT 58.684 50.000 8.06 0.00 42.39 3.01
88 89 1.679680 TCTCGTGTGAACTCCGTTCTT 59.320 47.619 8.06 0.00 42.39 2.52
89 90 2.100252 TCTCGTGTGAACTCCGTTCTTT 59.900 45.455 8.06 0.00 42.39 2.52
90 91 3.316029 TCTCGTGTGAACTCCGTTCTTTA 59.684 43.478 8.06 0.00 42.39 1.85
91 92 4.022589 TCTCGTGTGAACTCCGTTCTTTAT 60.023 41.667 8.06 0.00 42.39 1.40
92 93 3.985279 TCGTGTGAACTCCGTTCTTTATG 59.015 43.478 8.06 1.56 42.39 1.90
93 94 3.985279 CGTGTGAACTCCGTTCTTTATGA 59.015 43.478 8.06 0.00 42.39 2.15
94 95 4.446385 CGTGTGAACTCCGTTCTTTATGAA 59.554 41.667 8.06 0.00 42.39 2.57
124 125 5.948588 ACTCTAGATGCATACTGAATAGCG 58.051 41.667 0.00 0.00 0.00 4.26
125 126 5.105957 ACTCTAGATGCATACTGAATAGCGG 60.106 44.000 0.00 0.00 0.00 5.52
126 127 4.767409 TCTAGATGCATACTGAATAGCGGT 59.233 41.667 0.00 0.00 39.97 5.68
127 128 3.919216 AGATGCATACTGAATAGCGGTC 58.081 45.455 0.00 0.00 37.31 4.79
128 129 2.134201 TGCATACTGAATAGCGGTCG 57.866 50.000 0.00 0.00 37.31 4.79
129 130 1.679153 TGCATACTGAATAGCGGTCGA 59.321 47.619 0.00 0.00 37.31 4.20
130 131 2.296190 TGCATACTGAATAGCGGTCGAT 59.704 45.455 0.00 0.00 37.31 3.59
131 132 2.663602 GCATACTGAATAGCGGTCGATG 59.336 50.000 0.00 0.00 37.31 3.84
132 133 3.857383 GCATACTGAATAGCGGTCGATGT 60.857 47.826 0.00 0.00 37.31 3.06
133 134 2.209838 ACTGAATAGCGGTCGATGTG 57.790 50.000 0.00 0.00 0.00 3.21
134 135 1.476891 ACTGAATAGCGGTCGATGTGT 59.523 47.619 0.00 0.00 0.00 3.72
135 136 1.854743 CTGAATAGCGGTCGATGTGTG 59.145 52.381 0.00 0.00 0.00 3.82
136 137 1.209128 GAATAGCGGTCGATGTGTGG 58.791 55.000 0.00 0.00 0.00 4.17
137 138 0.821517 AATAGCGGTCGATGTGTGGA 59.178 50.000 0.00 0.00 0.00 4.02
138 139 0.385751 ATAGCGGTCGATGTGTGGAG 59.614 55.000 0.00 0.00 0.00 3.86
139 140 0.963856 TAGCGGTCGATGTGTGGAGT 60.964 55.000 0.00 0.00 0.00 3.85
140 141 0.963856 AGCGGTCGATGTGTGGAGTA 60.964 55.000 0.00 0.00 0.00 2.59
141 142 0.108992 GCGGTCGATGTGTGGAGTAA 60.109 55.000 0.00 0.00 0.00 2.24
142 143 1.470979 GCGGTCGATGTGTGGAGTAAT 60.471 52.381 0.00 0.00 0.00 1.89
143 144 2.223641 GCGGTCGATGTGTGGAGTAATA 60.224 50.000 0.00 0.00 0.00 0.98
144 145 3.629058 CGGTCGATGTGTGGAGTAATAG 58.371 50.000 0.00 0.00 0.00 1.73
145 146 3.066342 CGGTCGATGTGTGGAGTAATAGT 59.934 47.826 0.00 0.00 0.00 2.12
146 147 4.274214 CGGTCGATGTGTGGAGTAATAGTA 59.726 45.833 0.00 0.00 0.00 1.82
147 148 5.560375 CGGTCGATGTGTGGAGTAATAGTAG 60.560 48.000 0.00 0.00 0.00 2.57
148 149 5.298777 GGTCGATGTGTGGAGTAATAGTAGT 59.701 44.000 0.00 0.00 0.00 2.73
149 150 6.484643 GGTCGATGTGTGGAGTAATAGTAGTA 59.515 42.308 0.00 0.00 0.00 1.82
150 151 7.307870 GGTCGATGTGTGGAGTAATAGTAGTAG 60.308 44.444 0.00 0.00 0.00 2.57
151 152 7.440556 GTCGATGTGTGGAGTAATAGTAGTAGA 59.559 40.741 0.00 0.00 0.00 2.59
152 153 8.155510 TCGATGTGTGGAGTAATAGTAGTAGAT 58.844 37.037 0.00 0.00 0.00 1.98
153 154 8.231161 CGATGTGTGGAGTAATAGTAGTAGATG 58.769 40.741 0.00 0.00 0.00 2.90
154 155 7.273320 TGTGTGGAGTAATAGTAGTAGATGC 57.727 40.000 0.00 0.00 0.00 3.91
155 156 6.831868 TGTGTGGAGTAATAGTAGTAGATGCA 59.168 38.462 0.00 0.00 0.00 3.96
156 157 7.013369 TGTGTGGAGTAATAGTAGTAGATGCAG 59.987 40.741 0.00 0.00 0.00 4.41
157 158 7.228906 GTGTGGAGTAATAGTAGTAGATGCAGA 59.771 40.741 0.00 0.00 0.00 4.26
158 159 7.228906 TGTGGAGTAATAGTAGTAGATGCAGAC 59.771 40.741 0.00 0.00 0.00 3.51
159 160 7.228906 GTGGAGTAATAGTAGTAGATGCAGACA 59.771 40.741 0.00 0.00 0.00 3.41
160 161 7.445707 TGGAGTAATAGTAGTAGATGCAGACAG 59.554 40.741 0.00 0.00 0.00 3.51
161 162 7.662258 GGAGTAATAGTAGTAGATGCAGACAGA 59.338 40.741 0.00 0.00 0.00 3.41
162 163 8.982091 AGTAATAGTAGTAGATGCAGACAGAA 57.018 34.615 0.00 0.00 0.00 3.02
163 164 9.062524 AGTAATAGTAGTAGATGCAGACAGAAG 57.937 37.037 0.00 0.00 0.00 2.85
164 165 7.889873 AATAGTAGTAGATGCAGACAGAAGT 57.110 36.000 0.00 0.00 0.00 3.01
165 166 5.828299 AGTAGTAGATGCAGACAGAAGTC 57.172 43.478 0.00 0.00 45.31 3.01
179 180 6.757026 GACAGAAGTCAGTCTACTTGTTTC 57.243 41.667 0.00 0.00 44.34 2.78
180 181 6.222038 ACAGAAGTCAGTCTACTTGTTTCA 57.778 37.500 0.00 0.00 39.78 2.69
181 182 6.276847 ACAGAAGTCAGTCTACTTGTTTCAG 58.723 40.000 0.00 0.00 39.78 3.02
182 183 6.096987 ACAGAAGTCAGTCTACTTGTTTCAGA 59.903 38.462 0.00 0.00 39.78 3.27
183 184 6.419413 CAGAAGTCAGTCTACTTGTTTCAGAC 59.581 42.308 0.00 0.00 39.78 3.51
184 185 4.861210 AGTCAGTCTACTTGTTTCAGACG 58.139 43.478 0.00 0.00 42.80 4.18
185 186 4.338682 AGTCAGTCTACTTGTTTCAGACGT 59.661 41.667 0.00 0.00 42.80 4.34
186 187 4.441415 GTCAGTCTACTTGTTTCAGACGTG 59.559 45.833 0.00 0.00 42.80 4.49
187 188 4.337274 TCAGTCTACTTGTTTCAGACGTGA 59.663 41.667 0.00 0.00 42.80 4.35
188 189 5.009710 TCAGTCTACTTGTTTCAGACGTGAT 59.990 40.000 0.00 0.00 42.80 3.06
189 190 5.117745 CAGTCTACTTGTTTCAGACGTGATG 59.882 44.000 0.00 0.00 42.80 3.07
190 191 3.987868 TCTACTTGTTTCAGACGTGATGC 59.012 43.478 0.00 0.00 30.85 3.91
191 192 1.873591 ACTTGTTTCAGACGTGATGCC 59.126 47.619 0.00 0.00 30.85 4.40
192 193 2.146342 CTTGTTTCAGACGTGATGCCT 58.854 47.619 0.00 0.00 30.85 4.75
193 194 3.244078 ACTTGTTTCAGACGTGATGCCTA 60.244 43.478 0.00 0.00 30.85 3.93
194 195 3.610040 TGTTTCAGACGTGATGCCTAT 57.390 42.857 0.00 0.00 30.85 2.57
195 196 4.729227 TGTTTCAGACGTGATGCCTATA 57.271 40.909 0.00 0.00 30.85 1.31
196 197 5.276461 TGTTTCAGACGTGATGCCTATAT 57.724 39.130 0.00 0.00 30.85 0.86
197 198 6.399639 TGTTTCAGACGTGATGCCTATATA 57.600 37.500 0.00 0.00 30.85 0.86
198 199 6.993079 TGTTTCAGACGTGATGCCTATATAT 58.007 36.000 0.00 0.00 30.85 0.86
199 200 8.117813 TGTTTCAGACGTGATGCCTATATATA 57.882 34.615 0.00 0.00 30.85 0.86
200 201 8.749354 TGTTTCAGACGTGATGCCTATATATAT 58.251 33.333 0.00 0.00 30.85 0.86
201 202 9.025020 GTTTCAGACGTGATGCCTATATATATG 57.975 37.037 5.44 0.00 30.85 1.78
202 203 8.519799 TTCAGACGTGATGCCTATATATATGA 57.480 34.615 5.44 0.00 30.85 2.15
203 204 8.697507 TCAGACGTGATGCCTATATATATGAT 57.302 34.615 5.44 0.00 0.00 2.45
204 205 8.787852 TCAGACGTGATGCCTATATATATGATC 58.212 37.037 5.44 3.10 0.00 2.92
205 206 8.571336 CAGACGTGATGCCTATATATATGATCA 58.429 37.037 5.44 0.00 0.00 2.92
206 207 9.306777 AGACGTGATGCCTATATATATGATCAT 57.693 33.333 13.81 13.81 0.00 2.45
207 208 9.920133 GACGTGATGCCTATATATATGATCATT 57.080 33.333 14.65 4.68 0.00 2.57
208 209 9.702494 ACGTGATGCCTATATATATGATCATTG 57.298 33.333 14.65 7.21 0.00 2.82
209 210 9.702494 CGTGATGCCTATATATATGATCATTGT 57.298 33.333 14.65 6.04 0.00 2.71
225 226 8.976986 TGATCATTGTCTTAGATATCGTCATG 57.023 34.615 0.00 0.00 0.00 3.07
226 227 8.796475 TGATCATTGTCTTAGATATCGTCATGA 58.204 33.333 0.00 0.00 0.00 3.07
227 228 9.800433 GATCATTGTCTTAGATATCGTCATGAT 57.200 33.333 0.00 3.77 41.30 2.45
241 242 9.888878 ATATCGTCATGATTATTTGCTTTTCTG 57.111 29.630 0.00 0.00 38.57 3.02
242 243 7.144722 TCGTCATGATTATTTGCTTTTCTGT 57.855 32.000 0.00 0.00 0.00 3.41
243 244 7.592938 TCGTCATGATTATTTGCTTTTCTGTT 58.407 30.769 0.00 0.00 0.00 3.16
244 245 8.726068 TCGTCATGATTATTTGCTTTTCTGTTA 58.274 29.630 0.00 0.00 0.00 2.41
245 246 9.340695 CGTCATGATTATTTGCTTTTCTGTTAA 57.659 29.630 0.00 0.00 0.00 2.01
255 256 8.994429 TTTGCTTTTCTGTTAATTTCTCAACA 57.006 26.923 0.00 0.00 33.76 3.33
256 257 9.598517 TTTGCTTTTCTGTTAATTTCTCAACAT 57.401 25.926 0.00 0.00 34.34 2.71
257 258 9.598517 TTGCTTTTCTGTTAATTTCTCAACATT 57.401 25.926 0.00 0.00 34.34 2.71
273 274 9.921637 TTCTCAACATTAATTTGTTTATCCACC 57.078 29.630 8.98 0.00 37.73 4.61
274 275 8.240682 TCTCAACATTAATTTGTTTATCCACCG 58.759 33.333 8.98 0.00 37.73 4.94
275 276 7.887381 TCAACATTAATTTGTTTATCCACCGT 58.113 30.769 8.98 0.00 37.73 4.83
276 277 9.011095 TCAACATTAATTTGTTTATCCACCGTA 57.989 29.630 8.98 0.00 37.73 4.02
277 278 9.627395 CAACATTAATTTGTTTATCCACCGTAA 57.373 29.630 0.00 0.00 37.73 3.18
278 279 9.849166 AACATTAATTTGTTTATCCACCGTAAG 57.151 29.630 0.00 0.00 36.43 2.34
279 280 7.971722 ACATTAATTTGTTTATCCACCGTAAGC 59.028 33.333 0.00 0.00 0.00 3.09
280 281 7.690952 TTAATTTGTTTATCCACCGTAAGCT 57.309 32.000 0.00 0.00 0.00 3.74
281 282 8.789825 TTAATTTGTTTATCCACCGTAAGCTA 57.210 30.769 0.00 0.00 0.00 3.32
282 283 7.875327 AATTTGTTTATCCACCGTAAGCTAT 57.125 32.000 0.00 0.00 0.00 2.97
283 284 6.671614 TTTGTTTATCCACCGTAAGCTATG 57.328 37.500 0.00 0.00 0.00 2.23
284 285 5.347620 TGTTTATCCACCGTAAGCTATGT 57.652 39.130 0.00 0.00 0.00 2.29
285 286 5.736813 TGTTTATCCACCGTAAGCTATGTT 58.263 37.500 0.00 0.00 0.00 2.71
286 287 5.813672 TGTTTATCCACCGTAAGCTATGTTC 59.186 40.000 0.00 0.00 0.00 3.18
287 288 5.601583 TTATCCACCGTAAGCTATGTTCA 57.398 39.130 0.00 0.00 0.00 3.18
288 289 3.965379 TCCACCGTAAGCTATGTTCAA 57.035 42.857 0.00 0.00 0.00 2.69
289 290 4.274602 TCCACCGTAAGCTATGTTCAAA 57.725 40.909 0.00 0.00 0.00 2.69
290 291 4.250464 TCCACCGTAAGCTATGTTCAAAG 58.750 43.478 0.00 0.00 0.00 2.77
291 292 4.020928 TCCACCGTAAGCTATGTTCAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
292 293 4.330074 CCACCGTAAGCTATGTTCAAAGAG 59.670 45.833 0.00 0.00 0.00 2.85
293 294 5.168569 CACCGTAAGCTATGTTCAAAGAGA 58.831 41.667 0.00 0.00 0.00 3.10
294 295 5.289675 CACCGTAAGCTATGTTCAAAGAGAG 59.710 44.000 0.00 0.00 0.00 3.20
295 296 5.185249 ACCGTAAGCTATGTTCAAAGAGAGA 59.815 40.000 0.00 0.00 0.00 3.10
296 297 6.100004 CCGTAAGCTATGTTCAAAGAGAGAA 58.900 40.000 0.00 0.00 0.00 2.87
297 298 6.254589 CCGTAAGCTATGTTCAAAGAGAGAAG 59.745 42.308 0.00 0.00 0.00 2.85
298 299 6.809196 CGTAAGCTATGTTCAAAGAGAGAAGT 59.191 38.462 0.00 0.00 0.00 3.01
299 300 7.008810 CGTAAGCTATGTTCAAAGAGAGAAGTC 59.991 40.741 0.00 0.00 0.00 3.01
300 301 6.603940 AGCTATGTTCAAAGAGAGAAGTCT 57.396 37.500 0.00 0.00 34.86 3.24
301 302 7.003402 AGCTATGTTCAAAGAGAGAAGTCTT 57.997 36.000 0.00 0.00 38.48 3.01
302 303 7.449247 AGCTATGTTCAAAGAGAGAAGTCTTT 58.551 34.615 0.00 0.00 45.75 2.52
303 304 8.589338 AGCTATGTTCAAAGAGAGAAGTCTTTA 58.411 33.333 0.00 0.00 43.52 1.85
304 305 8.868916 GCTATGTTCAAAGAGAGAAGTCTTTAG 58.131 37.037 0.00 0.00 43.52 1.85
305 306 9.921637 CTATGTTCAAAGAGAGAAGTCTTTAGT 57.078 33.333 0.00 0.00 43.52 2.24
319 320 9.887629 AGAAGTCTTTAGTAAAAACTATAGCCC 57.112 33.333 2.05 0.00 0.00 5.19
320 321 9.662947 GAAGTCTTTAGTAAAAACTATAGCCCA 57.337 33.333 2.05 0.00 0.00 5.36
329 330 9.445878 AGTAAAAACTATAGCCCAAAGTTCTAC 57.554 33.333 0.00 0.00 32.42 2.59
330 331 7.698506 AAAAACTATAGCCCAAAGTTCTACC 57.301 36.000 0.00 0.00 32.42 3.18
331 332 6.638021 AAACTATAGCCCAAAGTTCTACCT 57.362 37.500 0.00 0.00 32.42 3.08
332 333 6.638021 AACTATAGCCCAAAGTTCTACCTT 57.362 37.500 0.00 0.00 0.00 3.50
333 334 6.638021 ACTATAGCCCAAAGTTCTACCTTT 57.362 37.500 0.00 0.00 35.06 3.11
334 335 7.744678 ACTATAGCCCAAAGTTCTACCTTTA 57.255 36.000 0.00 0.00 33.00 1.85
335 336 8.333226 ACTATAGCCCAAAGTTCTACCTTTAT 57.667 34.615 0.00 0.00 33.00 1.40
336 337 8.430431 ACTATAGCCCAAAGTTCTACCTTTATC 58.570 37.037 0.00 0.00 33.00 1.75
337 338 5.514500 AGCCCAAAGTTCTACCTTTATCA 57.486 39.130 0.00 0.00 33.00 2.15
338 339 6.079712 AGCCCAAAGTTCTACCTTTATCAT 57.920 37.500 0.00 0.00 33.00 2.45
339 340 7.208064 AGCCCAAAGTTCTACCTTTATCATA 57.792 36.000 0.00 0.00 33.00 2.15
340 341 7.639378 AGCCCAAAGTTCTACCTTTATCATAA 58.361 34.615 0.00 0.00 33.00 1.90
341 342 8.113462 AGCCCAAAGTTCTACCTTTATCATAAA 58.887 33.333 0.00 0.00 33.00 1.40
342 343 8.745590 GCCCAAAGTTCTACCTTTATCATAAAA 58.254 33.333 0.00 0.00 33.00 1.52
365 366 7.737972 AATTAAAATACAAAAACTGTGGCCC 57.262 32.000 0.00 0.00 39.20 5.80
366 367 3.762407 AAATACAAAAACTGTGGCCCC 57.238 42.857 0.00 0.00 39.20 5.80
367 368 2.390225 ATACAAAAACTGTGGCCCCA 57.610 45.000 0.00 0.00 39.20 4.96
368 369 2.160721 TACAAAAACTGTGGCCCCAA 57.839 45.000 0.00 0.00 39.20 4.12
369 370 0.829990 ACAAAAACTGTGGCCCCAAG 59.170 50.000 0.00 0.00 36.69 3.61
370 371 0.532640 CAAAAACTGTGGCCCCAAGC 60.533 55.000 0.00 0.00 42.60 4.01
379 380 4.259952 GCCCCAAGCCCTAATGTC 57.740 61.111 0.00 0.00 34.35 3.06
380 381 1.306296 GCCCCAAGCCCTAATGTCA 59.694 57.895 0.00 0.00 34.35 3.58
381 382 0.106015 GCCCCAAGCCCTAATGTCAT 60.106 55.000 0.00 0.00 34.35 3.06
382 383 1.986882 CCCCAAGCCCTAATGTCATC 58.013 55.000 0.00 0.00 0.00 2.92
402 403 1.198637 CTTGCTACTTGCTGCTTCACC 59.801 52.381 0.00 0.00 43.37 4.02
406 407 2.508526 CTACTTGCTGCTTCACCCTTT 58.491 47.619 0.00 0.00 0.00 3.11
412 413 1.809547 GCTGCTTCACCCTTTCTCTTC 59.190 52.381 0.00 0.00 0.00 2.87
413 414 2.431454 CTGCTTCACCCTTTCTCTTCC 58.569 52.381 0.00 0.00 0.00 3.46
415 416 1.002087 GCTTCACCCTTTCTCTTCCGA 59.998 52.381 0.00 0.00 0.00 4.55
428 429 3.119814 TCTCTTCCGAGAATCACAACGAG 60.120 47.826 0.00 0.00 43.10 4.18
432 433 1.630148 CGAGAATCACAACGAGTCCC 58.370 55.000 0.00 0.00 39.62 4.46
496 497 2.359478 GCCCTACAACGGTGGTGG 60.359 66.667 4.97 6.18 0.00 4.61
503 504 1.821759 CAACGGTGGTGGTGCAAGA 60.822 57.895 0.00 0.00 0.00 3.02
504 505 1.525995 AACGGTGGTGGTGCAAGAG 60.526 57.895 0.00 0.00 0.00 2.85
505 506 2.669569 CGGTGGTGGTGCAAGAGG 60.670 66.667 0.00 0.00 0.00 3.69
536 543 2.029844 GTCCGAACCAGTCAGCTGC 61.030 63.158 9.47 4.26 41.26 5.25
538 545 1.739562 CCGAACCAGTCAGCTGCTC 60.740 63.158 9.47 4.66 41.26 4.26
541 548 0.250467 GAACCAGTCAGCTGCTCCAA 60.250 55.000 9.47 0.00 41.26 3.53
548 555 2.042259 CAGCTGCTCCAATCGGCAA 61.042 57.895 0.00 0.00 38.02 4.52
562 571 2.815211 GCAACGATCAGCGCAGGA 60.815 61.111 11.47 7.31 46.04 3.86
573 582 4.544689 CGCAGGAGGAGCTCGTCG 62.545 72.222 25.58 16.14 0.00 5.12
574 583 4.200283 GCAGGAGGAGCTCGTCGG 62.200 72.222 25.58 21.21 0.00 4.79
682 701 2.493278 GGACACCACCATGATTTTCCAG 59.507 50.000 0.00 0.00 0.00 3.86
694 713 1.448922 TTTTCCAGGCGAAACGGTGG 61.449 55.000 0.00 0.00 40.23 4.61
695 714 3.835790 TTCCAGGCGAAACGGTGGG 62.836 63.158 0.00 0.00 0.00 4.61
708 727 2.037367 GTGGGGGAAGGGGAAAGC 59.963 66.667 0.00 0.00 0.00 3.51
716 735 1.569072 GGAAGGGGAAAGCATAAGGGA 59.431 52.381 0.00 0.00 0.00 4.20
722 741 3.431415 GGGAAAGCATAAGGGAACAAGT 58.569 45.455 0.00 0.00 0.00 3.16
723 742 3.193479 GGGAAAGCATAAGGGAACAAGTG 59.807 47.826 0.00 0.00 0.00 3.16
724 743 3.193479 GGAAAGCATAAGGGAACAAGTGG 59.807 47.826 0.00 0.00 0.00 4.00
725 744 1.839424 AGCATAAGGGAACAAGTGGC 58.161 50.000 0.00 0.00 0.00 5.01
729 748 3.872240 GCATAAGGGAACAAGTGGCTACA 60.872 47.826 2.02 0.00 0.00 2.74
743 762 1.060698 GGCTACAAATCACTCGAACGC 59.939 52.381 0.00 0.00 0.00 4.84
747 766 2.019951 AAATCACTCGAACGCGCGT 61.020 52.632 32.73 32.73 35.57 6.01
770 791 1.881252 CGACCGGCCGAAATTCGAT 60.881 57.895 30.73 0.23 43.74 3.59
802 1127 7.989741 CCTATCACTGGCCTATAATAAATCAGG 59.010 40.741 3.32 0.00 0.00 3.86
847 1172 3.717400 TCCGTAGCTCTAGCAAATCTG 57.283 47.619 4.54 0.00 45.16 2.90
849 1174 2.546795 CCGTAGCTCTAGCAAATCTGGG 60.547 54.545 4.54 0.00 45.16 4.45
947 2236 0.249911 ACCTTGCGTCCACTCAACTC 60.250 55.000 0.00 0.00 0.00 3.01
948 2237 0.249868 CCTTGCGTCCACTCAACTCA 60.250 55.000 0.00 0.00 0.00 3.41
949 2238 1.581934 CTTGCGTCCACTCAACTCAA 58.418 50.000 0.00 0.00 0.00 3.02
950 2239 1.939934 CTTGCGTCCACTCAACTCAAA 59.060 47.619 0.00 0.00 0.00 2.69
951 2240 1.581934 TGCGTCCACTCAACTCAAAG 58.418 50.000 0.00 0.00 0.00 2.77
952 2241 1.138069 TGCGTCCACTCAACTCAAAGA 59.862 47.619 0.00 0.00 0.00 2.52
953 2242 1.795286 GCGTCCACTCAACTCAAAGAG 59.205 52.381 0.00 0.00 37.87 2.85
954 2243 2.803492 GCGTCCACTCAACTCAAAGAGT 60.803 50.000 0.00 0.00 45.64 3.24
963 2252 3.454447 TCAACTCAAAGAGTGGAGTGGAA 59.546 43.478 0.00 0.00 42.59 3.53
965 2254 5.306937 TCAACTCAAAGAGTGGAGTGGAATA 59.693 40.000 0.00 0.00 42.59 1.75
981 2270 2.419297 GGAATAGAGTGGAGTGGCACTG 60.419 54.545 27.45 0.00 0.00 3.66
1009 2298 0.684535 TCCTCCTTGCATGTCAACGA 59.315 50.000 0.00 0.00 0.00 3.85
1027 2316 2.686405 ACGAAAACAAAAGGTGTCCTCC 59.314 45.455 0.00 0.00 40.60 4.30
1044 2333 1.241327 CCCCTCCCATCCATCTCCT 59.759 63.158 0.00 0.00 0.00 3.69
1141 2430 1.194781 ACACACCCTACCTGAGCCAG 61.195 60.000 0.00 0.00 0.00 4.85
1199 2488 2.023771 CTCGCTTCGCTGCACTTCA 61.024 57.895 0.00 0.00 0.00 3.02
1268 2557 5.433526 TGGTAGTACTACATGATTTTGGGC 58.566 41.667 29.38 11.62 37.78 5.36
1312 2601 3.486383 TCCCATGTTTGTCTCTTGGAAC 58.514 45.455 0.00 0.00 33.67 3.62
1323 2612 4.236147 GTCTCTTGGAACTAAACCGTCTC 58.764 47.826 0.00 0.00 0.00 3.36
1403 2695 5.977489 ACCAAACTGCTAATTAACTTCCC 57.023 39.130 0.00 0.00 0.00 3.97
1408 2700 7.065923 CCAAACTGCTAATTAACTTCCCTCTAC 59.934 40.741 0.00 0.00 0.00 2.59
1447 2745 2.568935 GAATGGAACTGAGCGCGCAC 62.569 60.000 35.10 28.49 0.00 5.34
1681 2979 0.679960 TCCTCATGCTCTCCGAACGA 60.680 55.000 0.00 0.00 0.00 3.85
1949 3247 2.676822 TCTTCACGGGCGAGCTCT 60.677 61.111 12.85 0.00 0.00 4.09
2126 3424 1.061799 CAACATGAAACGCAGCTCGC 61.062 55.000 0.00 2.29 43.23 5.03
2137 3435 0.809241 GCAGCTCGCTGAAGCAGTAT 60.809 55.000 22.09 0.00 46.30 2.12
2430 3734 1.992170 CACGGGTTCTACGGAAAGAG 58.008 55.000 0.00 0.00 32.81 2.85
2671 3986 3.434319 CTTTGCACCAGCGCCGAT 61.434 61.111 2.29 0.00 46.23 4.18
2697 4012 6.371809 TTGTTTAGTTAAGGAGCACTGTTG 57.628 37.500 0.00 0.00 0.00 3.33
2709 4024 1.135141 GCACTGTTGTGTTTTGCTCCA 60.135 47.619 0.00 0.00 45.44 3.86
2712 4027 2.195922 CTGTTGTGTTTTGCTCCAAGC 58.804 47.619 0.00 0.00 42.82 4.01
2713 4028 6.922641 CACTGTTGTGTTTTGCTCCAAGCA 62.923 45.833 0.00 0.00 43.31 3.91
2767 4082 2.083002 TGTGTATGTTGCATCGCATGT 58.917 42.857 8.57 0.00 38.76 3.21
2772 4087 3.957671 ATGTTGCATCGCATGTTCTAG 57.042 42.857 0.00 0.00 38.76 2.43
2777 4092 4.071961 TGCATCGCATGTTCTAGGTTAT 57.928 40.909 0.00 0.00 31.71 1.89
2792 4107 9.350951 GTTCTAGGTTATATATTTGGGTGCTTT 57.649 33.333 0.00 0.00 0.00 3.51
2821 4136 4.181578 ACCAATTCGAGTCCTTGATTACG 58.818 43.478 0.00 0.00 0.00 3.18
2826 4141 6.570672 ATTCGAGTCCTTGATTACGCTATA 57.429 37.500 0.00 0.00 0.00 1.31
2827 4142 6.570672 TTCGAGTCCTTGATTACGCTATAT 57.429 37.500 0.00 0.00 0.00 0.86
2828 4143 7.677454 TTCGAGTCCTTGATTACGCTATATA 57.323 36.000 0.00 0.00 0.00 0.86
2829 4144 7.860918 TCGAGTCCTTGATTACGCTATATAT 57.139 36.000 0.00 0.00 0.00 0.86
2892 6036 8.177663 CACTTCTTAATTAATCAGTGCGTCAAT 58.822 33.333 17.57 0.00 0.00 2.57
2899 6043 8.437360 AATTAATCAGTGCGTCAATTCTATGA 57.563 30.769 0.00 0.00 0.00 2.15
2907 6051 4.562789 TGCGTCAATTCTATGAAGAAGTCG 59.437 41.667 0.00 0.00 44.79 4.18
2932 6076 0.676151 GCTGGCTTGAGGAGAAGTGG 60.676 60.000 0.00 0.00 0.00 4.00
2935 6079 0.687354 GGCTTGAGGAGAAGTGGTGA 59.313 55.000 0.00 0.00 0.00 4.02
2937 6081 2.501723 GGCTTGAGGAGAAGTGGTGATA 59.498 50.000 0.00 0.00 0.00 2.15
2939 6083 4.565652 GGCTTGAGGAGAAGTGGTGATAAA 60.566 45.833 0.00 0.00 0.00 1.40
2940 6084 5.003804 GCTTGAGGAGAAGTGGTGATAAAA 58.996 41.667 0.00 0.00 0.00 1.52
2963 6107 5.667466 AGACTTTGTAGAAAACCTTGACGA 58.333 37.500 0.00 0.00 0.00 4.20
2976 6120 2.481104 CCTTGACGATGCTCCTCTTCTC 60.481 54.545 0.00 0.00 0.00 2.87
2980 6124 1.068921 GATGCTCCTCTTCTCGGCC 59.931 63.158 0.00 0.00 0.00 6.13
2983 6127 2.055042 GCTCCTCTTCTCGGCCTGA 61.055 63.158 0.00 0.00 0.00 3.86
3091 6240 2.861147 AGCCCTAAGAACACAACTCC 57.139 50.000 0.00 0.00 0.00 3.85
3140 6291 3.757745 ACGTTCGGATTTTAAGCATGG 57.242 42.857 0.00 0.00 0.00 3.66
3167 6318 5.216648 CACGGACGTTTTTCATGGTAATTT 58.783 37.500 0.00 0.00 0.00 1.82
3168 6319 5.341196 CACGGACGTTTTTCATGGTAATTTC 59.659 40.000 0.00 0.00 0.00 2.17
3169 6320 4.551892 CGGACGTTTTTCATGGTAATTTCG 59.448 41.667 0.00 0.00 0.00 3.46
3201 6352 2.685897 AGTGGCAAGTTTAGTTCGCAAA 59.314 40.909 0.00 0.00 0.00 3.68
3202 6353 2.787129 GTGGCAAGTTTAGTTCGCAAAC 59.213 45.455 0.00 0.00 36.37 2.93
3203 6354 2.423892 TGGCAAGTTTAGTTCGCAAACA 59.576 40.909 0.00 0.00 38.16 2.83
3204 6355 3.119459 TGGCAAGTTTAGTTCGCAAACAA 60.119 39.130 0.00 0.00 38.16 2.83
3205 6356 3.860536 GGCAAGTTTAGTTCGCAAACAAA 59.139 39.130 0.00 0.00 38.16 2.83
3207 6358 5.006261 GGCAAGTTTAGTTCGCAAACAAATT 59.994 36.000 0.00 0.00 38.16 1.82
3208 6359 6.456315 GGCAAGTTTAGTTCGCAAACAAATTT 60.456 34.615 0.00 0.00 38.16 1.82
3209 6360 6.958752 GCAAGTTTAGTTCGCAAACAAATTTT 59.041 30.769 0.00 0.00 38.16 1.82
3210 6361 7.045676 GCAAGTTTAGTTCGCAAACAAATTTTG 60.046 33.333 7.59 7.59 38.16 2.44
3212 6363 7.671827 AGTTTAGTTCGCAAACAAATTTTGTC 58.328 30.769 14.80 2.77 44.59 3.18
3213 6364 7.544217 AGTTTAGTTCGCAAACAAATTTTGTCT 59.456 29.630 14.80 8.51 44.59 3.41
3214 6365 5.949233 AGTTCGCAAACAAATTTTGTCTC 57.051 34.783 14.80 6.74 44.59 3.36
3215 6366 4.499040 AGTTCGCAAACAAATTTTGTCTCG 59.501 37.500 14.80 16.29 44.59 4.04
3216 6367 3.367607 TCGCAAACAAATTTTGTCTCGG 58.632 40.909 14.80 6.64 44.59 4.63
3217 6368 3.112580 CGCAAACAAATTTTGTCTCGGT 58.887 40.909 14.80 0.00 44.59 4.69
3218 6369 3.549873 CGCAAACAAATTTTGTCTCGGTT 59.450 39.130 14.80 3.16 44.59 4.44
3219 6370 4.317069 CGCAAACAAATTTTGTCTCGGTTC 60.317 41.667 14.80 1.35 44.59 3.62
3220 6371 4.026062 GCAAACAAATTTTGTCTCGGTTCC 60.026 41.667 14.80 0.00 44.59 3.62
3221 6372 5.348164 CAAACAAATTTTGTCTCGGTTCCT 58.652 37.500 14.80 0.00 44.59 3.36
3222 6373 5.592104 AACAAATTTTGTCTCGGTTCCTT 57.408 34.783 14.80 0.00 44.59 3.36
3223 6374 5.592104 ACAAATTTTGTCTCGGTTCCTTT 57.408 34.783 8.97 0.00 40.56 3.11
3224 6375 5.972935 ACAAATTTTGTCTCGGTTCCTTTT 58.027 33.333 8.97 0.00 40.56 2.27
3225 6376 6.403049 ACAAATTTTGTCTCGGTTCCTTTTT 58.597 32.000 8.97 0.00 40.56 1.94
3244 6395 4.543590 TTTTTGCCAGAAAAGTGTCCAA 57.456 36.364 0.00 0.00 0.00 3.53
3245 6396 4.543590 TTTTGCCAGAAAAGTGTCCAAA 57.456 36.364 0.00 0.00 0.00 3.28
3246 6397 3.518634 TTGCCAGAAAAGTGTCCAAAC 57.481 42.857 0.00 0.00 0.00 2.93
3256 6407 4.649088 AAGTGTCCAAACTAAACTTGCC 57.351 40.909 0.00 0.00 30.17 4.52
3264 6415 0.949105 ACTAAACTTGCCACCTCGCG 60.949 55.000 0.00 0.00 0.00 5.87
3269 6420 2.954753 CTTGCCACCTCGCGTCAAC 61.955 63.158 5.77 0.00 0.00 3.18
3271 6422 3.414700 GCCACCTCGCGTCAACTG 61.415 66.667 5.77 0.00 0.00 3.16
3289 6440 3.705604 ACTGAAGTTGCCATGAAAAACG 58.294 40.909 0.00 0.00 0.00 3.60
3292 6443 4.109050 TGAAGTTGCCATGAAAAACGTTC 58.891 39.130 0.00 0.00 0.00 3.95
3293 6444 4.142271 TGAAGTTGCCATGAAAAACGTTCT 60.142 37.500 0.00 0.00 0.00 3.01
3302 6481 2.190161 GAAAAACGTTCTGGTTGCCAC 58.810 47.619 0.00 0.00 0.00 5.01
3312 6491 2.959707 TCTGGTTGCCACGGTTAAAATT 59.040 40.909 0.00 0.00 0.00 1.82
3315 6494 2.321263 GTTGCCACGGTTAAAATTCGG 58.679 47.619 0.00 0.00 0.00 4.30
3333 6515 3.616219 TCGGACATTCGGGATTCATTTT 58.384 40.909 0.00 0.00 0.00 1.82
3340 6522 6.092748 ACATTCGGGATTCATTTTCGAAAAG 58.907 36.000 25.87 17.96 41.93 2.27
3407 6589 9.342308 CATCTCAGGAAATAGTTTTAGCCATTA 57.658 33.333 0.00 0.00 0.00 1.90
3408 6590 9.920946 ATCTCAGGAAATAGTTTTAGCCATTAA 57.079 29.630 0.00 0.00 0.00 1.40
3427 6610 7.802720 GCCATTAAAACCACAAATTTTAAGCAG 59.197 33.333 8.22 2.51 42.03 4.24
3435 6618 5.526846 CCACAAATTTTAAGCAGCTTCCAAA 59.473 36.000 12.07 12.46 0.00 3.28
3441 6624 8.992835 AATTTTAAGCAGCTTCCAAATCTTAG 57.007 30.769 12.07 0.00 0.00 2.18
3482 6665 4.062293 AGTCACTATTTTGTACTGCGCAA 58.938 39.130 13.05 0.00 0.00 4.85
3504 6687 2.581354 CTGCTTCTCTGGTCGGGG 59.419 66.667 0.00 0.00 0.00 5.73
3544 6727 5.467035 TCTTTTTCTTTTAGGCCCACATG 57.533 39.130 0.00 0.00 0.00 3.21
3550 6733 4.105577 TCTTTTAGGCCCACATGGTAGTA 58.894 43.478 0.00 0.00 36.04 1.82
3626 6809 7.026697 AGGAAAAAGAGAGAGGAAAGCTAAT 57.973 36.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.029809 CCCCTCCCCGTTTTCGCT 62.030 66.667 0.00 0.00 42.58 4.93
2 3 3.324108 TCCCCCTCCCCGTTTTCG 61.324 66.667 0.00 0.00 43.67 3.46
4 5 2.939353 CCTCCCCCTCCCCGTTTT 60.939 66.667 0.00 0.00 0.00 2.43
5 6 3.945064 CTCCTCCCCCTCCCCGTTT 62.945 68.421 0.00 0.00 0.00 3.60
6 7 4.416601 CTCCTCCCCCTCCCCGTT 62.417 72.222 0.00 0.00 0.00 4.44
10 11 4.179599 CTCCCTCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
11 12 3.036959 TCTCCCTCCTCCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
12 13 2.612251 CTCTCCCTCCTCCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
13 14 3.039526 CCTCTCCCTCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
14 15 4.179599 CCCTCTCCCTCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
15 16 4.179599 CCCCTCTCCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
16 17 3.036959 TCCCCTCTCCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
17 18 2.015726 TCTCCCCTCTCCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
18 19 0.996762 TCTCTCCCCTCTCCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
19 20 0.998945 CTCTCTCCCCTCTCCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
20 21 1.541672 CTCTCTCCCCTCTCCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
21 22 0.996762 TCCTCTCTCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
22 23 0.998945 CTCCTCTCTCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
23 24 1.541672 CTCCTCTCTCCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
24 25 0.996762 TCCTCCTCTCTCCCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
25 26 0.930726 TTCCTCCTCTCTCCCCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
26 27 0.933700 CTTCCTCCTCTCTCCCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
27 28 0.105709 CCTTCCTCCTCTCTCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
28 29 0.556380 TCCTTCCTCCTCTCTCCCCT 60.556 60.000 0.00 0.00 0.00 4.79
29 30 0.105709 CTCCTTCCTCCTCTCTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
30 31 0.105709 CCTCCTTCCTCCTCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
31 32 0.930726 TCCTCCTTCCTCCTCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
32 33 1.133482 CCTCCTCCTTCCTCCTCTCTC 60.133 61.905 0.00 0.00 0.00 3.20
33 34 0.933700 CCTCCTCCTTCCTCCTCTCT 59.066 60.000 0.00 0.00 0.00 3.10
34 35 0.930726 TCCTCCTCCTTCCTCCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
35 36 0.933700 CTCCTCCTCCTTCCTCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
36 37 0.759060 GCTCCTCCTCCTTCCTCCTC 60.759 65.000 0.00 0.00 0.00 3.71
37 38 1.313129 GCTCCTCCTCCTTCCTCCT 59.687 63.158 0.00 0.00 0.00 3.69
38 39 1.764454 GGCTCCTCCTCCTTCCTCC 60.764 68.421 0.00 0.00 0.00 4.30
39 40 0.399806 ATGGCTCCTCCTCCTTCCTC 60.400 60.000 0.00 0.00 35.26 3.71
40 41 0.399806 GATGGCTCCTCCTCCTTCCT 60.400 60.000 0.00 0.00 35.26 3.36
41 42 0.692419 TGATGGCTCCTCCTCCTTCC 60.692 60.000 0.00 0.00 35.26 3.46
42 43 1.433121 ATGATGGCTCCTCCTCCTTC 58.567 55.000 0.00 0.00 35.26 3.46
43 44 2.803285 TATGATGGCTCCTCCTCCTT 57.197 50.000 0.00 0.00 35.26 3.36
44 45 2.803285 TTATGATGGCTCCTCCTCCT 57.197 50.000 0.00 0.00 35.26 3.69
45 46 3.864789 TTTTATGATGGCTCCTCCTCC 57.135 47.619 0.00 0.00 35.26 4.30
46 47 6.067350 AGAAATTTTATGATGGCTCCTCCTC 58.933 40.000 0.00 0.00 35.26 3.71
47 48 6.023334 AGAAATTTTATGATGGCTCCTCCT 57.977 37.500 0.00 0.00 35.26 3.69
48 49 5.049129 CGAGAAATTTTATGATGGCTCCTCC 60.049 44.000 0.00 0.00 0.00 4.30
49 50 5.529060 ACGAGAAATTTTATGATGGCTCCTC 59.471 40.000 0.00 0.00 0.00 3.71
50 51 5.297776 CACGAGAAATTTTATGATGGCTCCT 59.702 40.000 0.00 0.00 0.00 3.69
51 52 5.066505 ACACGAGAAATTTTATGATGGCTCC 59.933 40.000 0.00 0.00 0.00 4.70
52 53 5.967674 CACACGAGAAATTTTATGATGGCTC 59.032 40.000 0.00 0.00 0.00 4.70
53 54 5.647658 TCACACGAGAAATTTTATGATGGCT 59.352 36.000 0.00 0.00 0.00 4.75
54 55 5.879237 TCACACGAGAAATTTTATGATGGC 58.121 37.500 0.00 0.00 0.00 4.40
55 56 7.530010 AGTTCACACGAGAAATTTTATGATGG 58.470 34.615 0.00 0.00 0.00 3.51
56 57 7.693951 GGAGTTCACACGAGAAATTTTATGATG 59.306 37.037 0.00 0.00 0.00 3.07
57 58 7.413000 CGGAGTTCACACGAGAAATTTTATGAT 60.413 37.037 0.00 0.00 0.00 2.45
58 59 6.128661 CGGAGTTCACACGAGAAATTTTATGA 60.129 38.462 0.00 0.00 0.00 2.15
59 60 6.015504 CGGAGTTCACACGAGAAATTTTATG 58.984 40.000 0.00 0.00 0.00 1.90
60 61 5.699458 ACGGAGTTCACACGAGAAATTTTAT 59.301 36.000 0.00 0.00 37.78 1.40
61 62 5.051816 ACGGAGTTCACACGAGAAATTTTA 58.948 37.500 0.00 0.00 37.78 1.52
62 63 3.875134 ACGGAGTTCACACGAGAAATTTT 59.125 39.130 0.00 0.00 37.78 1.82
63 64 3.463944 ACGGAGTTCACACGAGAAATTT 58.536 40.909 0.00 0.00 37.78 1.82
64 65 3.107642 ACGGAGTTCACACGAGAAATT 57.892 42.857 0.00 0.00 37.78 1.82
65 66 2.814280 ACGGAGTTCACACGAGAAAT 57.186 45.000 0.00 0.00 37.78 2.17
98 99 8.187480 CGCTATTCAGTATGCATCTAGAGTATT 58.813 37.037 0.19 0.00 34.76 1.89
99 100 7.201776 CCGCTATTCAGTATGCATCTAGAGTAT 60.202 40.741 0.19 0.00 34.76 2.12
100 101 6.094186 CCGCTATTCAGTATGCATCTAGAGTA 59.906 42.308 0.19 0.10 34.76 2.59
101 102 5.105957 CCGCTATTCAGTATGCATCTAGAGT 60.106 44.000 0.19 0.00 34.76 3.24
102 103 5.105957 ACCGCTATTCAGTATGCATCTAGAG 60.106 44.000 0.19 0.00 34.76 2.43
103 104 4.767409 ACCGCTATTCAGTATGCATCTAGA 59.233 41.667 0.19 0.00 34.76 2.43
104 105 5.065704 ACCGCTATTCAGTATGCATCTAG 57.934 43.478 0.19 0.00 34.76 2.43
105 106 4.379499 CGACCGCTATTCAGTATGCATCTA 60.379 45.833 0.19 0.00 34.76 1.98
106 107 3.612717 CGACCGCTATTCAGTATGCATCT 60.613 47.826 0.19 0.00 34.76 2.90
107 108 2.663602 CGACCGCTATTCAGTATGCATC 59.336 50.000 0.19 0.00 34.76 3.91
108 109 2.296190 TCGACCGCTATTCAGTATGCAT 59.704 45.455 3.79 3.79 34.76 3.96
109 110 1.679153 TCGACCGCTATTCAGTATGCA 59.321 47.619 0.00 0.00 34.76 3.96
110 111 2.417339 TCGACCGCTATTCAGTATGC 57.583 50.000 0.00 0.00 34.76 3.14
111 112 3.670523 CACATCGACCGCTATTCAGTATG 59.329 47.826 0.00 0.00 37.54 2.39
112 113 3.318275 ACACATCGACCGCTATTCAGTAT 59.682 43.478 0.00 0.00 0.00 2.12
113 114 2.686405 ACACATCGACCGCTATTCAGTA 59.314 45.455 0.00 0.00 0.00 2.74
114 115 1.476891 ACACATCGACCGCTATTCAGT 59.523 47.619 0.00 0.00 0.00 3.41
115 116 1.854743 CACACATCGACCGCTATTCAG 59.145 52.381 0.00 0.00 0.00 3.02
116 117 1.470805 CCACACATCGACCGCTATTCA 60.471 52.381 0.00 0.00 0.00 2.57
117 118 1.202371 TCCACACATCGACCGCTATTC 60.202 52.381 0.00 0.00 0.00 1.75
118 119 0.821517 TCCACACATCGACCGCTATT 59.178 50.000 0.00 0.00 0.00 1.73
119 120 0.385751 CTCCACACATCGACCGCTAT 59.614 55.000 0.00 0.00 0.00 2.97
120 121 0.963856 ACTCCACACATCGACCGCTA 60.964 55.000 0.00 0.00 0.00 4.26
121 122 0.963856 TACTCCACACATCGACCGCT 60.964 55.000 0.00 0.00 0.00 5.52
122 123 0.108992 TTACTCCACACATCGACCGC 60.109 55.000 0.00 0.00 0.00 5.68
123 124 2.579207 ATTACTCCACACATCGACCG 57.421 50.000 0.00 0.00 0.00 4.79
124 125 4.650754 ACTATTACTCCACACATCGACC 57.349 45.455 0.00 0.00 0.00 4.79
125 126 6.374565 ACTACTATTACTCCACACATCGAC 57.625 41.667 0.00 0.00 0.00 4.20
126 127 7.503549 TCTACTACTATTACTCCACACATCGA 58.496 38.462 0.00 0.00 0.00 3.59
127 128 7.725818 TCTACTACTATTACTCCACACATCG 57.274 40.000 0.00 0.00 0.00 3.84
128 129 8.024285 GCATCTACTACTATTACTCCACACATC 58.976 40.741 0.00 0.00 0.00 3.06
129 130 7.505923 TGCATCTACTACTATTACTCCACACAT 59.494 37.037 0.00 0.00 0.00 3.21
130 131 6.831868 TGCATCTACTACTATTACTCCACACA 59.168 38.462 0.00 0.00 0.00 3.72
131 132 7.228906 TCTGCATCTACTACTATTACTCCACAC 59.771 40.741 0.00 0.00 0.00 3.82
132 133 7.228906 GTCTGCATCTACTACTATTACTCCACA 59.771 40.741 0.00 0.00 0.00 4.17
133 134 7.228906 TGTCTGCATCTACTACTATTACTCCAC 59.771 40.741 0.00 0.00 0.00 4.02
134 135 7.287810 TGTCTGCATCTACTACTATTACTCCA 58.712 38.462 0.00 0.00 0.00 3.86
135 136 7.662258 TCTGTCTGCATCTACTACTATTACTCC 59.338 40.741 0.00 0.00 0.00 3.85
136 137 8.610248 TCTGTCTGCATCTACTACTATTACTC 57.390 38.462 0.00 0.00 0.00 2.59
137 138 8.982091 TTCTGTCTGCATCTACTACTATTACT 57.018 34.615 0.00 0.00 0.00 2.24
138 139 8.842280 ACTTCTGTCTGCATCTACTACTATTAC 58.158 37.037 0.00 0.00 0.00 1.89
139 140 8.982091 ACTTCTGTCTGCATCTACTACTATTA 57.018 34.615 0.00 0.00 0.00 0.98
140 141 7.558081 TGACTTCTGTCTGCATCTACTACTATT 59.442 37.037 0.00 0.00 43.29 1.73
141 142 7.057264 TGACTTCTGTCTGCATCTACTACTAT 58.943 38.462 0.00 0.00 43.29 2.12
142 143 6.415573 TGACTTCTGTCTGCATCTACTACTA 58.584 40.000 0.00 0.00 43.29 1.82
143 144 5.257262 TGACTTCTGTCTGCATCTACTACT 58.743 41.667 0.00 0.00 43.29 2.57
144 145 5.124776 ACTGACTTCTGTCTGCATCTACTAC 59.875 44.000 0.00 0.00 43.21 2.73
145 146 5.257262 ACTGACTTCTGTCTGCATCTACTA 58.743 41.667 0.00 0.00 43.21 1.82
146 147 4.085733 ACTGACTTCTGTCTGCATCTACT 58.914 43.478 0.00 0.00 43.21 2.57
147 148 4.420168 GACTGACTTCTGTCTGCATCTAC 58.580 47.826 8.57 0.00 43.21 2.59
148 149 4.710423 GACTGACTTCTGTCTGCATCTA 57.290 45.455 8.57 0.00 43.21 1.98
149 150 3.591196 GACTGACTTCTGTCTGCATCT 57.409 47.619 8.57 0.00 43.21 2.90
156 157 6.273825 TGAAACAAGTAGACTGACTTCTGTC 58.726 40.000 7.91 7.91 42.75 3.51
157 158 6.096987 TCTGAAACAAGTAGACTGACTTCTGT 59.903 38.462 0.00 0.00 37.57 3.41
158 159 6.419413 GTCTGAAACAAGTAGACTGACTTCTG 59.581 42.308 0.00 0.00 37.57 3.02
159 160 6.508777 GTCTGAAACAAGTAGACTGACTTCT 58.491 40.000 0.00 0.00 37.57 2.85
160 161 5.399892 CGTCTGAAACAAGTAGACTGACTTC 59.600 44.000 0.00 0.00 37.57 3.01
161 162 5.163540 ACGTCTGAAACAAGTAGACTGACTT 60.164 40.000 0.00 0.00 40.35 3.01
162 163 4.338682 ACGTCTGAAACAAGTAGACTGACT 59.661 41.667 0.00 0.00 38.87 3.41
163 164 4.441415 CACGTCTGAAACAAGTAGACTGAC 59.559 45.833 0.00 0.00 38.87 3.51
164 165 4.337274 TCACGTCTGAAACAAGTAGACTGA 59.663 41.667 0.00 0.00 38.87 3.41
165 166 4.607955 TCACGTCTGAAACAAGTAGACTG 58.392 43.478 0.00 0.00 38.87 3.51
166 167 4.913335 TCACGTCTGAAACAAGTAGACT 57.087 40.909 0.00 0.00 38.87 3.24
167 168 4.143305 GCATCACGTCTGAAACAAGTAGAC 60.143 45.833 0.00 0.00 37.93 2.59
168 169 3.987868 GCATCACGTCTGAAACAAGTAGA 59.012 43.478 0.00 0.00 0.00 2.59
169 170 3.123621 GGCATCACGTCTGAAACAAGTAG 59.876 47.826 0.00 0.00 0.00 2.57
170 171 3.064207 GGCATCACGTCTGAAACAAGTA 58.936 45.455 0.00 0.00 0.00 2.24
171 172 1.873591 GGCATCACGTCTGAAACAAGT 59.126 47.619 0.00 0.00 0.00 3.16
172 173 2.146342 AGGCATCACGTCTGAAACAAG 58.854 47.619 0.00 0.00 0.00 3.16
173 174 2.254546 AGGCATCACGTCTGAAACAA 57.745 45.000 0.00 0.00 0.00 2.83
174 175 3.610040 ATAGGCATCACGTCTGAAACA 57.390 42.857 0.00 0.00 0.00 2.83
175 176 9.025020 CATATATATAGGCATCACGTCTGAAAC 57.975 37.037 0.00 0.00 0.00 2.78
176 177 8.966868 TCATATATATAGGCATCACGTCTGAAA 58.033 33.333 0.00 0.00 0.00 2.69
177 178 8.519799 TCATATATATAGGCATCACGTCTGAA 57.480 34.615 0.00 0.00 0.00 3.02
178 179 8.697507 ATCATATATATAGGCATCACGTCTGA 57.302 34.615 0.00 0.00 0.00 3.27
179 180 8.571336 TGATCATATATATAGGCATCACGTCTG 58.429 37.037 11.87 0.00 0.00 3.51
180 181 8.697507 TGATCATATATATAGGCATCACGTCT 57.302 34.615 11.87 0.00 0.00 4.18
181 182 9.920133 AATGATCATATATATAGGCATCACGTC 57.080 33.333 9.04 2.76 0.00 4.34
182 183 9.702494 CAATGATCATATATATAGGCATCACGT 57.298 33.333 9.04 8.72 0.00 4.49
183 184 9.702494 ACAATGATCATATATATAGGCATCACG 57.298 33.333 9.04 13.24 0.00 4.35
199 200 9.583765 CATGACGATATCTAAGACAATGATCAT 57.416 33.333 1.18 1.18 0.00 2.45
200 201 8.796475 TCATGACGATATCTAAGACAATGATCA 58.204 33.333 0.00 0.00 0.00 2.92
201 202 9.800433 ATCATGACGATATCTAAGACAATGATC 57.200 33.333 0.00 0.00 30.32 2.92
215 216 9.888878 CAGAAAAGCAAATAATCATGACGATAT 57.111 29.630 0.00 0.00 32.51 1.63
216 217 8.892723 ACAGAAAAGCAAATAATCATGACGATA 58.107 29.630 0.00 0.00 32.51 2.92
217 218 7.765307 ACAGAAAAGCAAATAATCATGACGAT 58.235 30.769 0.00 0.00 35.12 3.73
218 219 7.144722 ACAGAAAAGCAAATAATCATGACGA 57.855 32.000 0.00 0.00 0.00 4.20
219 220 7.801547 AACAGAAAAGCAAATAATCATGACG 57.198 32.000 0.00 0.00 0.00 4.35
229 230 9.598517 TGTTGAGAAATTAACAGAAAAGCAAAT 57.401 25.926 0.00 0.00 33.29 2.32
230 231 8.994429 TGTTGAGAAATTAACAGAAAAGCAAA 57.006 26.923 0.00 0.00 33.29 3.68
231 232 9.598517 AATGTTGAGAAATTAACAGAAAAGCAA 57.401 25.926 0.00 0.00 39.83 3.91
247 248 9.921637 GGTGGATAAACAAATTAATGTTGAGAA 57.078 29.630 13.71 3.48 42.49 2.87
248 249 8.240682 CGGTGGATAAACAAATTAATGTTGAGA 58.759 33.333 13.71 0.00 42.49 3.27
249 250 8.026607 ACGGTGGATAAACAAATTAATGTTGAG 58.973 33.333 13.71 0.00 42.49 3.02
250 251 7.887381 ACGGTGGATAAACAAATTAATGTTGA 58.113 30.769 13.71 0.80 42.49 3.18
251 252 9.627395 TTACGGTGGATAAACAAATTAATGTTG 57.373 29.630 0.00 2.92 42.49 3.33
252 253 9.849166 CTTACGGTGGATAAACAAATTAATGTT 57.151 29.630 0.00 0.00 45.12 2.71
253 254 7.971722 GCTTACGGTGGATAAACAAATTAATGT 59.028 33.333 0.00 0.00 34.24 2.71
254 255 8.188139 AGCTTACGGTGGATAAACAAATTAATG 58.812 33.333 0.00 0.00 0.00 1.90
255 256 8.288689 AGCTTACGGTGGATAAACAAATTAAT 57.711 30.769 0.00 0.00 0.00 1.40
256 257 7.690952 AGCTTACGGTGGATAAACAAATTAA 57.309 32.000 0.00 0.00 0.00 1.40
257 258 8.832521 CATAGCTTACGGTGGATAAACAAATTA 58.167 33.333 0.00 0.00 0.00 1.40
258 259 7.338449 ACATAGCTTACGGTGGATAAACAAATT 59.662 33.333 0.00 0.00 0.00 1.82
259 260 6.826741 ACATAGCTTACGGTGGATAAACAAAT 59.173 34.615 0.00 0.00 0.00 2.32
260 261 6.174760 ACATAGCTTACGGTGGATAAACAAA 58.825 36.000 0.00 0.00 0.00 2.83
261 262 5.736813 ACATAGCTTACGGTGGATAAACAA 58.263 37.500 0.00 0.00 0.00 2.83
262 263 5.347620 ACATAGCTTACGGTGGATAAACA 57.652 39.130 0.00 0.00 0.00 2.83
263 264 5.813672 TGAACATAGCTTACGGTGGATAAAC 59.186 40.000 0.00 0.00 0.00 2.01
264 265 5.979993 TGAACATAGCTTACGGTGGATAAA 58.020 37.500 0.00 0.00 0.00 1.40
265 266 5.601583 TGAACATAGCTTACGGTGGATAA 57.398 39.130 0.00 0.00 0.00 1.75
266 267 5.601583 TTGAACATAGCTTACGGTGGATA 57.398 39.130 0.00 0.00 0.00 2.59
267 268 4.481368 TTGAACATAGCTTACGGTGGAT 57.519 40.909 0.00 0.00 0.00 3.41
268 269 3.965379 TTGAACATAGCTTACGGTGGA 57.035 42.857 0.00 0.00 0.00 4.02
269 270 4.250464 TCTTTGAACATAGCTTACGGTGG 58.750 43.478 0.00 0.00 0.00 4.61
270 271 5.168569 TCTCTTTGAACATAGCTTACGGTG 58.831 41.667 0.00 0.00 0.00 4.94
271 272 5.185249 TCTCTCTTTGAACATAGCTTACGGT 59.815 40.000 0.00 0.00 0.00 4.83
272 273 5.651530 TCTCTCTTTGAACATAGCTTACGG 58.348 41.667 0.00 0.00 0.00 4.02
273 274 6.809196 ACTTCTCTCTTTGAACATAGCTTACG 59.191 38.462 0.00 0.00 0.00 3.18
274 275 8.032451 AGACTTCTCTCTTTGAACATAGCTTAC 58.968 37.037 0.00 0.00 0.00 2.34
275 276 8.128322 AGACTTCTCTCTTTGAACATAGCTTA 57.872 34.615 0.00 0.00 0.00 3.09
276 277 7.003402 AGACTTCTCTCTTTGAACATAGCTT 57.997 36.000 0.00 0.00 0.00 3.74
277 278 6.603940 AGACTTCTCTCTTTGAACATAGCT 57.396 37.500 0.00 0.00 0.00 3.32
278 279 7.665561 AAAGACTTCTCTCTTTGAACATAGC 57.334 36.000 0.00 0.00 38.75 2.97
279 280 9.921637 ACTAAAGACTTCTCTCTTTGAACATAG 57.078 33.333 4.74 0.00 40.13 2.23
293 294 9.887629 GGGCTATAGTTTTTACTAAAGACTTCT 57.112 33.333 9.39 2.68 0.00 2.85
294 295 9.662947 TGGGCTATAGTTTTTACTAAAGACTTC 57.337 33.333 9.39 0.25 0.00 3.01
303 304 9.445878 GTAGAACTTTGGGCTATAGTTTTTACT 57.554 33.333 8.00 3.95 32.58 2.24
304 305 8.671921 GGTAGAACTTTGGGCTATAGTTTTTAC 58.328 37.037 8.00 12.14 32.58 2.01
305 306 8.608598 AGGTAGAACTTTGGGCTATAGTTTTTA 58.391 33.333 8.00 2.81 32.58 1.52
306 307 7.467650 AGGTAGAACTTTGGGCTATAGTTTTT 58.532 34.615 8.00 3.61 32.58 1.94
307 308 7.029053 AGGTAGAACTTTGGGCTATAGTTTT 57.971 36.000 8.00 5.50 32.58 2.43
308 309 6.638021 AGGTAGAACTTTGGGCTATAGTTT 57.362 37.500 8.00 2.41 32.58 2.66
309 310 6.638021 AAGGTAGAACTTTGGGCTATAGTT 57.362 37.500 6.41 6.41 34.97 2.24
310 311 6.638021 AAAGGTAGAACTTTGGGCTATAGT 57.362 37.500 0.84 0.00 39.11 2.12
311 312 8.429641 TGATAAAGGTAGAACTTTGGGCTATAG 58.570 37.037 2.74 0.00 40.64 1.31
312 313 8.326765 TGATAAAGGTAGAACTTTGGGCTATA 57.673 34.615 2.74 0.00 40.64 1.31
313 314 7.208064 TGATAAAGGTAGAACTTTGGGCTAT 57.792 36.000 2.74 0.00 40.64 2.97
314 315 6.630203 TGATAAAGGTAGAACTTTGGGCTA 57.370 37.500 2.74 0.00 40.64 3.93
315 316 5.514500 TGATAAAGGTAGAACTTTGGGCT 57.486 39.130 2.74 0.00 40.64 5.19
316 317 7.875327 TTATGATAAAGGTAGAACTTTGGGC 57.125 36.000 2.74 0.00 40.64 5.36
339 340 8.625651 GGGCCACAGTTTTTGTATTTTAATTTT 58.374 29.630 4.39 0.00 38.16 1.82
340 341 7.229707 GGGGCCACAGTTTTTGTATTTTAATTT 59.770 33.333 4.39 0.00 38.16 1.82
341 342 6.712998 GGGGCCACAGTTTTTGTATTTTAATT 59.287 34.615 4.39 0.00 38.16 1.40
342 343 6.183361 TGGGGCCACAGTTTTTGTATTTTAAT 60.183 34.615 1.54 0.00 38.16 1.40
343 344 5.130477 TGGGGCCACAGTTTTTGTATTTTAA 59.870 36.000 1.54 0.00 38.16 1.52
344 345 4.654262 TGGGGCCACAGTTTTTGTATTTTA 59.346 37.500 1.54 0.00 38.16 1.52
345 346 3.456277 TGGGGCCACAGTTTTTGTATTTT 59.544 39.130 1.54 0.00 38.16 1.82
346 347 3.041946 TGGGGCCACAGTTTTTGTATTT 58.958 40.909 1.54 0.00 38.16 1.40
347 348 2.683768 TGGGGCCACAGTTTTTGTATT 58.316 42.857 1.54 0.00 38.16 1.89
348 349 2.390225 TGGGGCCACAGTTTTTGTAT 57.610 45.000 1.54 0.00 38.16 2.29
349 350 2.035632 CTTGGGGCCACAGTTTTTGTA 58.964 47.619 8.27 0.00 38.16 2.41
350 351 0.829990 CTTGGGGCCACAGTTTTTGT 59.170 50.000 8.27 0.00 41.94 2.83
351 352 0.532640 GCTTGGGGCCACAGTTTTTG 60.533 55.000 8.27 0.00 34.27 2.44
352 353 1.829456 GCTTGGGGCCACAGTTTTT 59.171 52.632 8.27 0.00 34.27 1.94
353 354 3.549730 GCTTGGGGCCACAGTTTT 58.450 55.556 8.27 0.00 34.27 2.43
362 363 0.106015 ATGACATTAGGGCTTGGGGC 60.106 55.000 0.00 0.00 40.90 5.80
363 364 1.496429 AGATGACATTAGGGCTTGGGG 59.504 52.381 0.00 0.00 0.00 4.96
364 365 2.954318 CAAGATGACATTAGGGCTTGGG 59.046 50.000 6.10 0.00 31.60 4.12
365 366 2.360165 GCAAGATGACATTAGGGCTTGG 59.640 50.000 12.98 0.37 34.78 3.61
366 367 3.285484 AGCAAGATGACATTAGGGCTTG 58.715 45.455 8.68 8.68 36.67 4.01
367 368 3.659183 AGCAAGATGACATTAGGGCTT 57.341 42.857 0.00 0.00 0.00 4.35
368 369 3.713764 AGTAGCAAGATGACATTAGGGCT 59.286 43.478 8.99 8.99 0.00 5.19
369 370 4.078639 AGTAGCAAGATGACATTAGGGC 57.921 45.455 0.00 0.00 0.00 5.19
370 371 4.274459 GCAAGTAGCAAGATGACATTAGGG 59.726 45.833 0.00 0.00 44.79 3.53
371 372 5.415415 GCAAGTAGCAAGATGACATTAGG 57.585 43.478 0.00 0.00 44.79 2.69
412 413 1.630148 GGACTCGTTGTGATTCTCGG 58.370 55.000 0.00 0.00 0.00 4.63
413 414 1.630148 GGGACTCGTTGTGATTCTCG 58.370 55.000 0.00 0.00 0.00 4.04
415 416 0.389948 GCGGGACTCGTTGTGATTCT 60.390 55.000 0.00 0.00 41.72 2.40
422 423 4.796231 CTCCCGCGGGACTCGTTG 62.796 72.222 42.66 27.49 39.76 4.10
425 426 3.584052 CTACTCCCGCGGGACTCG 61.584 72.222 42.66 33.34 39.76 4.18
428 429 3.766691 TTGCTACTCCCGCGGGAC 61.767 66.667 42.66 31.48 39.76 4.46
432 433 4.430765 ACCGTTGCTACTCCCGCG 62.431 66.667 0.00 0.00 0.00 6.46
460 461 0.798776 CTCCCACAATGCGTGTCTTC 59.201 55.000 0.00 0.00 44.78 2.87
461 462 1.237285 GCTCCCACAATGCGTGTCTT 61.237 55.000 0.00 0.00 44.78 3.01
468 469 0.323360 TTGTAGGGCTCCCACAATGC 60.323 55.000 7.82 0.00 38.92 3.56
476 477 2.267961 CCACCGTTGTAGGGCTCC 59.732 66.667 0.00 0.00 35.02 4.70
477 478 1.375523 CACCACCGTTGTAGGGCTC 60.376 63.158 0.00 0.00 35.02 4.70
496 497 4.329545 TCACCCCGCCTCTTGCAC 62.330 66.667 0.00 0.00 41.33 4.57
509 510 3.714001 GGTTCGGACCCCCTCACC 61.714 72.222 0.00 0.00 40.25 4.02
511 512 2.606519 CTGGTTCGGACCCCCTCA 60.607 66.667 11.33 0.00 45.92 3.86
512 513 2.606826 ACTGGTTCGGACCCCCTC 60.607 66.667 11.33 0.00 45.92 4.30
513 514 2.606826 GACTGGTTCGGACCCCCT 60.607 66.667 11.33 0.00 45.92 4.79
548 555 2.755876 TCCTCCTGCGCTGATCGT 60.756 61.111 16.65 0.00 41.07 3.73
552 559 3.456365 GAGCTCCTCCTGCGCTGA 61.456 66.667 16.65 7.95 33.47 4.26
553 560 4.869440 CGAGCTCCTCCTGCGCTG 62.869 72.222 9.73 8.47 33.47 5.18
555 562 4.863925 GACGAGCTCCTCCTGCGC 62.864 72.222 8.47 0.00 35.28 6.09
584 593 4.429212 CATGTCCACGGCGGTCGA 62.429 66.667 9.82 0.00 42.43 4.20
594 605 2.747460 GCGAGCTTGCCATGTCCA 60.747 61.111 15.66 0.00 0.00 4.02
634 645 2.123854 AGATGCCAGCCAGCCATG 60.124 61.111 0.00 0.00 0.00 3.66
659 678 2.493278 GGAAAATCATGGTGGTGTCCAG 59.507 50.000 0.00 0.00 41.05 3.86
660 679 2.158400 TGGAAAATCATGGTGGTGTCCA 60.158 45.455 0.00 0.00 42.01 4.02
682 701 4.646877 TTCCCCCACCGTTTCGCC 62.647 66.667 0.00 0.00 0.00 5.54
694 713 1.411644 CCTTATGCTTTCCCCTTCCCC 60.412 57.143 0.00 0.00 0.00 4.81
695 714 1.411644 CCCTTATGCTTTCCCCTTCCC 60.412 57.143 0.00 0.00 0.00 3.97
698 717 2.381961 TGTTCCCTTATGCTTTCCCCTT 59.618 45.455 0.00 0.00 0.00 3.95
708 727 3.950397 TGTAGCCACTTGTTCCCTTATG 58.050 45.455 0.00 0.00 0.00 1.90
716 735 3.498397 CGAGTGATTTGTAGCCACTTGTT 59.502 43.478 0.00 0.00 40.80 2.83
722 741 2.333926 CGTTCGAGTGATTTGTAGCCA 58.666 47.619 0.00 0.00 0.00 4.75
723 742 1.060698 GCGTTCGAGTGATTTGTAGCC 59.939 52.381 0.00 0.00 0.00 3.93
724 743 1.266404 CGCGTTCGAGTGATTTGTAGC 60.266 52.381 0.00 0.00 38.10 3.58
725 744 1.266404 GCGCGTTCGAGTGATTTGTAG 60.266 52.381 8.43 0.00 38.10 2.74
729 748 2.019951 ACGCGCGTTCGAGTGATTT 61.020 52.632 32.73 1.54 46.52 2.17
749 768 3.376914 GAATTTCGGCCGGTCGCAC 62.377 63.158 26.77 8.96 40.31 5.34
750 769 3.122323 GAATTTCGGCCGGTCGCA 61.122 61.111 26.77 11.43 40.31 5.10
752 771 1.818221 GATCGAATTTCGGCCGGTCG 61.818 60.000 25.52 25.52 40.88 4.79
770 791 2.731571 GGCCAGTGATAGGTGCCGA 61.732 63.158 0.00 0.00 31.55 5.54
775 796 8.449423 TGATTTATTATAGGCCAGTGATAGGT 57.551 34.615 5.01 0.00 0.00 3.08
802 1127 9.194271 GATGGATTTTAACTACGTCTAGGATTC 57.806 37.037 0.00 0.00 0.00 2.52
816 1141 5.405873 GCTAGAGCTACGGATGGATTTTAAC 59.594 44.000 0.00 0.00 38.21 2.01
827 1152 2.362397 CCAGATTTGCTAGAGCTACGGA 59.638 50.000 2.72 0.00 42.66 4.69
847 1172 2.917600 CCACCCTCCCCTATTTATACCC 59.082 54.545 0.00 0.00 0.00 3.69
849 1174 3.329814 CCACCACCCTCCCCTATTTATAC 59.670 52.174 0.00 0.00 0.00 1.47
947 2236 5.174395 CACTCTATTCCACTCCACTCTTTG 58.826 45.833 0.00 0.00 0.00 2.77
948 2237 4.223923 CCACTCTATTCCACTCCACTCTTT 59.776 45.833 0.00 0.00 0.00 2.52
949 2238 3.772025 CCACTCTATTCCACTCCACTCTT 59.228 47.826 0.00 0.00 0.00 2.85
950 2239 3.011821 TCCACTCTATTCCACTCCACTCT 59.988 47.826 0.00 0.00 0.00 3.24
951 2240 3.366396 TCCACTCTATTCCACTCCACTC 58.634 50.000 0.00 0.00 0.00 3.51
952 2241 3.245803 ACTCCACTCTATTCCACTCCACT 60.246 47.826 0.00 0.00 0.00 4.00
953 2242 3.100671 ACTCCACTCTATTCCACTCCAC 58.899 50.000 0.00 0.00 0.00 4.02
954 2243 3.099905 CACTCCACTCTATTCCACTCCA 58.900 50.000 0.00 0.00 0.00 3.86
955 2244 2.432510 CCACTCCACTCTATTCCACTCC 59.567 54.545 0.00 0.00 0.00 3.85
956 2245 2.159028 GCCACTCCACTCTATTCCACTC 60.159 54.545 0.00 0.00 0.00 3.51
963 2252 1.198713 CCAGTGCCACTCCACTCTAT 58.801 55.000 0.00 0.00 43.85 1.98
965 2254 0.546267 ATCCAGTGCCACTCCACTCT 60.546 55.000 0.00 0.00 43.85 3.24
981 2270 1.068921 GCAAGGAGGAGAGCGATCC 59.931 63.158 0.00 2.23 39.89 3.36
1009 2298 2.394632 GGGGAGGACACCTTTTGTTTT 58.605 47.619 0.00 0.00 39.17 2.43
1027 2316 0.839853 GGAGGAGATGGATGGGAGGG 60.840 65.000 0.00 0.00 0.00 4.30
1141 2430 1.090052 GCGTACCTCATGGTTGCTCC 61.090 60.000 0.00 0.00 46.05 4.70
1165 2454 2.011046 GCGAGCCAAGAATCAGAAGCT 61.011 52.381 0.00 0.00 0.00 3.74
1195 2484 3.817647 ACTTGGTTAGAAAGCTGCTGAAG 59.182 43.478 1.35 0.00 0.00 3.02
1199 2488 4.402474 ACAAAACTTGGTTAGAAAGCTGCT 59.598 37.500 0.00 0.00 34.12 4.24
1255 2544 1.077663 AGTCTGGGCCCAAAATCATGT 59.922 47.619 28.29 1.30 0.00 3.21
1256 2545 1.753073 GAGTCTGGGCCCAAAATCATG 59.247 52.381 28.29 12.68 0.00 3.07
1257 2546 1.342374 GGAGTCTGGGCCCAAAATCAT 60.342 52.381 26.02 9.41 0.00 2.45
1258 2547 0.039618 GGAGTCTGGGCCCAAAATCA 59.960 55.000 26.02 5.45 0.00 2.57
1259 2548 0.039618 TGGAGTCTGGGCCCAAAATC 59.960 55.000 28.29 22.70 0.00 2.17
1260 2549 0.486879 TTGGAGTCTGGGCCCAAAAT 59.513 50.000 28.29 13.52 37.05 1.82
1261 2550 0.263172 TTTGGAGTCTGGGCCCAAAA 59.737 50.000 28.29 19.23 44.25 2.44
1312 2601 1.132643 AGCAGCTACGAGACGGTTTAG 59.867 52.381 0.00 0.00 0.00 1.85
1323 2612 2.252072 TTTGGCCCCTAGCAGCTACG 62.252 60.000 0.00 0.00 46.50 3.51
1403 2695 2.413112 CACTGCATTGGAACACGTAGAG 59.587 50.000 0.00 0.00 39.29 2.43
1408 2700 1.081242 GCCACTGCATTGGAACACG 60.081 57.895 26.07 0.00 39.24 4.49
1499 2797 0.692756 TCGTGGATATCCCCAAGGCA 60.693 55.000 19.34 0.00 38.06 4.75
1504 2802 0.263468 TGTCCTCGTGGATATCCCCA 59.737 55.000 19.34 0.00 45.29 4.96
1949 3247 2.659063 CCGCCATGGACAGGTCAGA 61.659 63.158 18.40 0.00 42.00 3.27
2050 3348 3.788766 GTGTCGTCGCCACCATGC 61.789 66.667 0.00 0.00 0.00 4.06
2126 3424 1.576356 GCCGAGGAATACTGCTTCAG 58.424 55.000 0.00 0.00 37.52 3.02
2430 3734 3.499737 CGCAGTTGATGTCGGCCC 61.500 66.667 0.00 0.00 0.00 5.80
2671 3986 4.515191 CAGTGCTCCTTAACTAAACAAGCA 59.485 41.667 0.00 0.00 36.04 3.91
2739 4054 4.731480 CGATGCAACATACACACATGAATG 59.269 41.667 0.00 0.00 0.00 2.67
2740 4055 4.731483 GCGATGCAACATACACACATGAAT 60.731 41.667 0.00 0.00 0.00 2.57
2741 4056 3.426025 GCGATGCAACATACACACATGAA 60.426 43.478 0.00 0.00 0.00 2.57
2743 4058 2.159544 TGCGATGCAACATACACACATG 60.160 45.455 0.00 0.00 34.76 3.21
2745 4060 1.517242 TGCGATGCAACATACACACA 58.483 45.000 0.00 0.00 34.76 3.72
2746 4061 2.159531 ACATGCGATGCAACATACACAC 60.160 45.455 0.00 0.00 43.62 3.82
2752 4067 2.615447 CCTAGAACATGCGATGCAACAT 59.385 45.455 0.00 0.00 43.62 2.71
2772 4087 8.644374 TCCATAAAGCACCCAAATATATAACC 57.356 34.615 0.00 0.00 0.00 2.85
2777 4092 6.897966 TGGTTTCCATAAAGCACCCAAATATA 59.102 34.615 0.00 0.00 45.55 0.86
2792 4107 4.837093 AGGACTCGAATTGGTTTCCATA 57.163 40.909 10.91 0.00 31.53 2.74
2892 6036 3.181499 GCGACTCCGACTTCTTCATAGAA 60.181 47.826 0.00 0.00 36.62 2.10
2899 6043 1.587054 CCAGCGACTCCGACTTCTT 59.413 57.895 0.00 0.00 38.22 2.52
2907 6051 2.125350 CCTCAAGCCAGCGACTCC 60.125 66.667 0.00 0.00 0.00 3.85
2937 6081 7.120138 TCGTCAAGGTTTTCTACAAAGTCTTTT 59.880 33.333 0.00 0.00 0.00 2.27
2939 6083 6.110707 TCGTCAAGGTTTTCTACAAAGTCTT 58.889 36.000 0.00 0.00 0.00 3.01
2940 6084 5.667466 TCGTCAAGGTTTTCTACAAAGTCT 58.333 37.500 0.00 0.00 0.00 3.24
2963 6107 1.382420 AGGCCGAGAAGAGGAGCAT 60.382 57.895 0.00 0.00 0.00 3.79
2976 6120 0.824109 TATCCACAAGACTCAGGCCG 59.176 55.000 0.00 0.00 0.00 6.13
2980 6124 5.505489 CGATCTGACTATCCACAAGACTCAG 60.505 48.000 0.00 0.00 0.00 3.35
2983 6127 3.634448 CCGATCTGACTATCCACAAGACT 59.366 47.826 0.00 0.00 0.00 3.24
3030 6174 2.609244 GCGGTTAATTTGCAGAAAGCCA 60.609 45.455 0.00 0.00 44.83 4.75
3038 6186 2.227865 GAGACTTGGCGGTTAATTTGCA 59.772 45.455 0.00 0.00 0.00 4.08
3115 6266 5.670149 TGCTTAAAATCCGAACGTTTGTA 57.330 34.783 14.38 0.00 0.00 2.41
3118 6269 4.481463 CCATGCTTAAAATCCGAACGTTT 58.519 39.130 0.46 0.00 0.00 3.60
3140 6291 1.778591 CATGAAAAACGTCCGTGTTGC 59.221 47.619 0.00 0.00 31.10 4.17
3145 6296 5.441709 AAATTACCATGAAAAACGTCCGT 57.558 34.783 0.00 0.00 0.00 4.69
3146 6297 4.551892 CGAAATTACCATGAAAAACGTCCG 59.448 41.667 0.00 0.00 0.00 4.79
3148 6299 5.454520 ACCGAAATTACCATGAAAAACGTC 58.545 37.500 0.00 0.00 0.00 4.34
3151 6302 6.921307 AGTCAACCGAAATTACCATGAAAAAC 59.079 34.615 0.00 0.00 0.00 2.43
3167 6318 1.006571 GCCACTTCGAGTCAACCGA 60.007 57.895 0.00 0.00 0.00 4.69
3168 6319 0.878523 TTGCCACTTCGAGTCAACCG 60.879 55.000 0.00 0.00 0.00 4.44
3169 6320 0.868406 CTTGCCACTTCGAGTCAACC 59.132 55.000 0.00 0.00 0.00 3.77
3202 6353 6.902224 AAAAAGGAACCGAGACAAAATTTG 57.098 33.333 3.89 3.89 0.00 2.32
3223 6374 4.543590 TTGGACACTTTTCTGGCAAAAA 57.456 36.364 0.00 0.00 0.00 1.94
3224 6375 4.020662 AGTTTGGACACTTTTCTGGCAAAA 60.021 37.500 0.00 0.00 0.00 2.44
3225 6376 3.513515 AGTTTGGACACTTTTCTGGCAAA 59.486 39.130 0.00 0.00 0.00 3.68
3226 6377 3.096092 AGTTTGGACACTTTTCTGGCAA 58.904 40.909 0.00 0.00 0.00 4.52
3227 6378 2.733956 AGTTTGGACACTTTTCTGGCA 58.266 42.857 0.00 0.00 0.00 4.92
3228 6379 4.911514 TTAGTTTGGACACTTTTCTGGC 57.088 40.909 0.00 0.00 0.00 4.85
3229 6380 6.451064 AGTTTAGTTTGGACACTTTTCTGG 57.549 37.500 0.00 0.00 0.00 3.86
3230 6381 6.253512 GCAAGTTTAGTTTGGACACTTTTCTG 59.746 38.462 0.00 0.00 0.00 3.02
3231 6382 6.330278 GCAAGTTTAGTTTGGACACTTTTCT 58.670 36.000 0.00 0.00 0.00 2.52
3232 6383 5.518847 GGCAAGTTTAGTTTGGACACTTTTC 59.481 40.000 0.00 0.00 0.00 2.29
3233 6384 5.046950 TGGCAAGTTTAGTTTGGACACTTTT 60.047 36.000 0.00 0.00 0.00 2.27
3234 6385 4.464597 TGGCAAGTTTAGTTTGGACACTTT 59.535 37.500 0.00 0.00 0.00 2.66
3235 6386 4.020543 TGGCAAGTTTAGTTTGGACACTT 58.979 39.130 0.00 0.00 0.00 3.16
3236 6387 3.380320 GTGGCAAGTTTAGTTTGGACACT 59.620 43.478 0.00 0.00 0.00 3.55
3237 6388 3.490249 GGTGGCAAGTTTAGTTTGGACAC 60.490 47.826 0.00 0.00 0.00 3.67
3238 6389 2.691011 GGTGGCAAGTTTAGTTTGGACA 59.309 45.455 0.00 0.00 0.00 4.02
3239 6390 2.956333 AGGTGGCAAGTTTAGTTTGGAC 59.044 45.455 0.00 0.00 0.00 4.02
3240 6391 3.219281 GAGGTGGCAAGTTTAGTTTGGA 58.781 45.455 0.00 0.00 0.00 3.53
3241 6392 2.031157 CGAGGTGGCAAGTTTAGTTTGG 60.031 50.000 0.00 0.00 0.00 3.28
3242 6393 2.604614 GCGAGGTGGCAAGTTTAGTTTG 60.605 50.000 0.00 0.00 0.00 2.93
3243 6394 1.607148 GCGAGGTGGCAAGTTTAGTTT 59.393 47.619 0.00 0.00 0.00 2.66
3244 6395 1.235724 GCGAGGTGGCAAGTTTAGTT 58.764 50.000 0.00 0.00 0.00 2.24
3245 6396 0.949105 CGCGAGGTGGCAAGTTTAGT 60.949 55.000 0.00 0.00 0.00 2.24
3246 6397 0.949105 ACGCGAGGTGGCAAGTTTAG 60.949 55.000 15.93 0.00 0.00 1.85
3256 6407 0.597637 ACTTCAGTTGACGCGAGGTG 60.598 55.000 15.93 2.47 0.00 4.00
3269 6420 3.705604 ACGTTTTTCATGGCAACTTCAG 58.294 40.909 0.00 0.00 37.61 3.02
3271 6422 4.207019 CAGAACGTTTTTCATGGCAACTTC 59.793 41.667 0.46 1.22 37.61 3.01
3278 6429 2.794350 GCAACCAGAACGTTTTTCATGG 59.206 45.455 0.46 8.84 0.00 3.66
3288 6439 0.881159 TAACCGTGGCAACCAGAACG 60.881 55.000 0.00 0.00 32.34 3.95
3289 6440 1.310904 TTAACCGTGGCAACCAGAAC 58.689 50.000 0.00 0.00 32.34 3.01
3292 6443 3.313690 GAATTTTAACCGTGGCAACCAG 58.686 45.455 0.00 0.00 32.34 4.00
3293 6444 2.287668 CGAATTTTAACCGTGGCAACCA 60.288 45.455 0.00 0.00 0.00 3.67
3302 6481 3.486209 CCCGAATGTCCGAATTTTAACCG 60.486 47.826 0.00 0.00 0.00 4.44
3312 6491 3.275617 AAATGAATCCCGAATGTCCGA 57.724 42.857 0.00 0.00 0.00 4.55
3315 6494 4.875544 TCGAAAATGAATCCCGAATGTC 57.124 40.909 0.00 0.00 0.00 3.06
3333 6515 5.943349 TCACCCCAAGTATATCTTTTCGA 57.057 39.130 0.00 0.00 33.63 3.71
3340 6522 4.201881 GCGTTGTTTCACCCCAAGTATATC 60.202 45.833 0.00 0.00 0.00 1.63
3407 6589 6.038161 GGAAGCTGCTTAAAATTTGTGGTTTT 59.962 34.615 15.95 0.00 33.67 2.43
3408 6590 5.527214 GGAAGCTGCTTAAAATTTGTGGTTT 59.473 36.000 15.95 0.00 0.00 3.27
3419 6601 7.759489 TTCTAAGATTTGGAAGCTGCTTAAA 57.241 32.000 15.95 13.33 0.00 1.52
3424 6607 5.573337 ACATTCTAAGATTTGGAAGCTGC 57.427 39.130 0.00 0.00 33.53 5.25
3427 6610 5.294552 AGCGTACATTCTAAGATTTGGAAGC 59.705 40.000 0.00 0.00 33.53 3.86
3435 6618 9.469807 CTCAAGATTTAGCGTACATTCTAAGAT 57.530 33.333 0.00 0.00 0.00 2.40
3441 6624 6.531948 AGTGACTCAAGATTTAGCGTACATTC 59.468 38.462 0.00 0.00 0.00 2.67
3584 6767 2.494870 TCCTCTCCCTTTGTAACGTAGC 59.505 50.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.