AutoCloner

Multiple sequence alignment - TraesCS5A01G093500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G093500	chr5A	100.000	3119	0	0	1	3119	129748599	129751717	0.000000e+00	5760.0
1	TraesCS5A01G093500	chr5A	91.218	353	26	5	2701	3051	129757647	129757996	2.810000e-130	475.0
2	TraesCS5A01G093500	chr5A	96.970	66	1	1	3045	3110	129800902	129800966	3.290000e-20	110.0
3	TraesCS5A01G093500	chr5A	78.378	185	27	13	2823	2999	24015737	24015916	1.180000e-19	108.0
4	TraesCS5A01G093500	chr5B	92.544	3125	191	24	1	3110	132587304	132590401	0.000000e+00	4442.0
5	TraesCS5A01G093500	chr5D	91.784	2629	178	12	1	2592	119658288	119660915	0.000000e+00	3624.0
6	TraesCS5A01G093500	chr5D	75.926	270	41	20	2745	2994	539540194	539539929	1.970000e-22	117.0
7	TraesCS5A01G093500	chr6D	85.190	2154	272	23	507	2640	1540282	1538156	0.000000e+00	2167.0
8	TraesCS5A01G093500	chr6D	84.867	1804	210	32	475	2260	8140100	8141858	0.000000e+00	1760.0
9	TraesCS5A01G093500	chr6D	86.643	277	33	3	2097	2372	3618463	3618190	1.410000e-78	303.0
10	TraesCS5A01G093500	chr6B	83.574	2149	299	27	508	2640	5715712	5713602	0.000000e+00	1964.0
11	TraesCS5A01G093500	chr6B	85.033	1804	214	24	475	2265	15105596	15107356	0.000000e+00	1784.0
12	TraesCS5A01G093500	chr6A	84.225	1813	220	33	475	2265	8608597	8610365	0.000000e+00	1703.0
13	TraesCS5A01G093500	chr6A	84.113	1838	211	43	475	2265	8387490	8389293	0.000000e+00	1701.0
14	TraesCS5A01G093500	chr7D	84.721	1381	175	18	507	1881	558888744	558887394	0.000000e+00	1349.0
15	TraesCS5A01G093500	chr7D	86.944	720	90	4	1920	2637	558848876	558848159	0.000000e+00	806.0
16	TraesCS5A01G093500	chr7B	87.019	416	44	9	2701	3113	390615815	390616223	7.880000e-126	460.0
17	TraesCS5A01G093500	chr7B	74.453	274	35	25	2745	2993	520316328	520316065	5.540000e-13	86.1
18	TraesCS5A01G093500	chr3A	76.339	896	157	31	1542	2422	623942447	623943302	2.220000e-116	429.0
19	TraesCS5A01G093500	chr3A	77.184	206	29	16	2807	2999	612689044	612689244	1.530000e-18	104.0
20	TraesCS5A01G093500	chr3B	76.116	896	157	30	1542	2422	642094653	642095506	1.730000e-112	416.0
21	TraesCS5A01G093500	chr2B	81.321	439	54	17	2701	3118	579596014	579595583	6.450000e-87	331.0
22	TraesCS5A01G093500	chr2B	74.051	316	50	24	2701	2993	367116413	367116719	1.980000e-17	100.0
23	TraesCS5A01G093500	chr2D	83.938	193	29	2	992	1183	633237252	633237061	1.910000e-42	183.0
24	TraesCS5A01G093500	chr2D	76.753	271	38	21	2745	2994	219808676	219808942	9.080000e-26	128.0
25	TraesCS5A01G093500	chr4A	77.404	208	30	15	2804	2999	257027957	257028159	1.180000e-19	108.0
26	TraesCS5A01G093500	chr3D	76.699	206	33	15	2798	2994	494437613	494437812	1.980000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G093500	chr5A	129748599	129751717	3118	False	5760	5760	100.000	1	3119	1	chr5A.!!$F2	3118
1	TraesCS5A01G093500	chr5B	132587304	132590401	3097	False	4442	4442	92.544	1	3110	1	chr5B.!!$F1	3109
2	TraesCS5A01G093500	chr5D	119658288	119660915	2627	False	3624	3624	91.784	1	2592	1	chr5D.!!$F1	2591
3	TraesCS5A01G093500	chr6D	1538156	1540282	2126	True	2167	2167	85.190	507	2640	1	chr6D.!!$R1	2133
4	TraesCS5A01G093500	chr6D	8140100	8141858	1758	False	1760	1760	84.867	475	2260	1	chr6D.!!$F1	1785
5	TraesCS5A01G093500	chr6B	5713602	5715712	2110	True	1964	1964	83.574	508	2640	1	chr6B.!!$R1	2132
6	TraesCS5A01G093500	chr6B	15105596	15107356	1760	False	1784	1784	85.033	475	2265	1	chr6B.!!$F1	1790
7	TraesCS5A01G093500	chr6A	8608597	8610365	1768	False	1703	1703	84.225	475	2265	1	chr6A.!!$F2	1790
8	TraesCS5A01G093500	chr6A	8387490	8389293	1803	False	1701	1701	84.113	475	2265	1	chr6A.!!$F1	1790
9	TraesCS5A01G093500	chr7D	558887394	558888744	1350	True	1349	1349	84.721	507	1881	1	chr7D.!!$R2	1374
10	TraesCS5A01G093500	chr7D	558848159	558848876	717	True	806	806	86.944	1920	2637	1	chr7D.!!$R1	717
11	TraesCS5A01G093500	chr3A	623942447	623943302	855	False	429	429	76.339	1542	2422	1	chr3A.!!$F2	880
12	TraesCS5A01G093500	chr3B	642094653	642095506	853	False	416	416	76.116	1542	2422	1	chr3B.!!$F1	880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
223	225	0.178964	CCACCACCACCATGTTTCCT	60.179	55.0	0.00	0.0	0.0	3.36	F
1960	2066	0.037326	TCAGGCTGCAAGTTACCTCG	60.037	55.0	10.34	0.0	35.3	4.63	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2076	2195	1.361993	CCTGCGGATCTTCTCCTCG	59.638	63.158	0.0	0.0	42.47	4.63	R
2914	3037	8.040727	ACCATAAAAGATAATCTTTGGGCAAAC	58.959	33.333	0.0	0.0	45.19	2.93	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	1.270893	GGGTCACTTCCTTGTGAGGTC	60.271	57.143	0.00	0.00	46.09	3.85
141	143	3.923425	GACCCTCCCCCATTAAATATCCT	59.077	47.826	0.00	0.00	0.00	3.24
168	170	0.552615	ACCCTAGAAGCCCAACCCAT	60.553	55.000	0.00	0.00	0.00	4.00
179	181	2.029380	GCCCAACCCATCTTACAACAAC	60.029	50.000	0.00	0.00	0.00	3.32
184	186	6.287525	CCAACCCATCTTACAACAACAAAAT	58.712	36.000	0.00	0.00	0.00	1.82
223	225	0.178964	CCACCACCACCATGTTTCCT	60.179	55.000	0.00	0.00	0.00	3.36
236	238	1.699634	TGTTTCCTCTTCCTCACCCTG	59.300	52.381	0.00	0.00	0.00	4.45
239	241	0.906756	TCCTCTTCCTCACCCTGCTG	60.907	60.000	0.00	0.00	0.00	4.41
279	281	1.229209	ACTGCCGAGGAGGAGGAAA	60.229	57.895	0.00	0.00	45.00	3.13
334	336	2.619931	TGGAACAGAGGAGGACATTCA	58.380	47.619	0.00	0.00	0.00	2.57
374	376	2.595707	CGTTGGTCACGTACTTGCA	58.404	52.632	0.00	0.00	44.49	4.08
397	399	1.680989	TCGGCATTGGAGGAGACGA	60.681	57.895	0.00	0.00	0.00	4.20
402	404	1.139853	GCATTGGAGGAGACGAGGAAT	59.860	52.381	0.00	0.00	0.00	3.01
420	422	0.990374	ATGGCATAGAGGAGATGGCC	59.010	55.000	0.00	0.00	46.46	5.36
422	424	1.294780	GCATAGAGGAGATGGCCGG	59.705	63.158	0.00	0.00	0.00	6.13
528	531	0.179001	TGCTAGATCGGGATCCACGA	60.179	55.000	22.25	22.25	45.19	4.35
541	544	2.262915	CACGACTGGCTGGAGGAC	59.737	66.667	0.00	0.00	0.00	3.85
548	552	4.410400	GGCTGGAGGACGTTGGGG	62.410	72.222	0.00	0.00	0.00	4.96
578	583	1.620822	GTTGCATGGGGAGACAAAGT	58.379	50.000	0.00	0.00	0.00	2.66
632	642	4.438148	GGAAGCCTTTTTGTAAAAGTGCA	58.562	39.130	18.56	0.00	32.23	4.57
672	682	3.001431	CGCTAGATATAGATCGGACGGTG	59.999	52.174	0.00	0.00	37.15	4.94
691	702	2.963782	GTGGAATATGTACTCGGACCCT	59.036	50.000	0.00	0.00	0.00	4.34
758	771	5.613329	TCGATTTGGTTTGGTAGTACTTGT	58.387	37.500	0.00	0.00	0.00	3.16
800	813	6.719829	TGTACGATAGATAGGTGTCCATTCAT	59.280	38.462	0.00	0.00	41.38	2.57
894	916	0.610687	CTTTTCCTCTCCTCTGCCGT	59.389	55.000	0.00	0.00	0.00	5.68
896	918	1.595993	TTTCCTCTCCTCTGCCGTCG	61.596	60.000	0.00	0.00	0.00	5.12
898	920	2.766400	CCTCTCCTCTGCCGTCGTC	61.766	68.421	0.00	0.00	0.00	4.20
899	921	2.033602	TCTCCTCTGCCGTCGTCA	59.966	61.111	0.00	0.00	0.00	4.35
988	1022	2.134287	ATGGCGACCGTAGAGGCAT	61.134	57.895	0.00	0.00	46.52	4.40
1005	1039	5.601729	AGAGGCATGTGAGAAGAAGATGATA	59.398	40.000	0.00	0.00	0.00	2.15
1064	1098	0.392193	GAGGCAGTCACCATGGAGTG	60.392	60.000	21.47	11.41	40.45	3.51
1161	1217	3.117474	TCCTCTCCAAGGTCATCGAGTAT	60.117	47.826	0.00	0.00	46.32	2.12
1163	1219	4.100189	CCTCTCCAAGGTCATCGAGTATTT	59.900	45.833	0.00	0.00	40.67	1.40
1167	1223	5.989477	TCCAAGGTCATCGAGTATTTCAAT	58.011	37.500	0.00	0.00	0.00	2.57
1314	1370	0.471211	ACCCTGACACCCTCTTCGAA	60.471	55.000	0.00	0.00	0.00	3.71
1388	1445	7.066781	TCTACTTTTTCTTGATGTTCCCCTTT	58.933	34.615	0.00	0.00	0.00	3.11
1429	1487	1.639298	GCTTGCCCGTCTTGCTACTG	61.639	60.000	0.00	0.00	0.00	2.74
1462	1520	2.100197	TGGATGGACTCCTCGTACAAG	58.900	52.381	0.00	0.00	45.21	3.16
1463	1521	2.291346	TGGATGGACTCCTCGTACAAGA	60.291	50.000	0.00	0.00	45.21	3.02
1678	1743	9.952030	TTATTATGATCAGTGTGAACTTACCAA	57.048	29.630	0.09	0.00	0.00	3.67
1705	1770	5.172934	CACTATCATTGTGCCAGCAAATTT	58.827	37.500	0.00	0.00	31.63	1.82
1760	1856	7.095397	CGATAGGTCACTTCATGTGTTGTTTTA	60.095	37.037	0.00	0.00	46.27	1.52
1867	1964	6.164408	TGTAACACATCTTAATGCAAGACG	57.836	37.500	0.00	0.00	46.01	4.18
1960	2066	0.037326	TCAGGCTGCAAGTTACCTCG	60.037	55.000	10.34	0.00	35.30	4.63
2053	2163	4.630069	AGATCCGTAATTTCTTCAACACCG	59.370	41.667	0.00	0.00	0.00	4.94
2076	2195	0.889306	ACGACTACTTGCCAGAGGAC	59.111	55.000	0.00	0.00	0.00	3.85
2157	2276	6.205853	TGGTGTTGAATGAACGCTTAGTATTT	59.794	34.615	0.00	0.00	43.50	1.40
2224	2343	8.038944	GGTTGTAATTACACTGGAGTCTATGAA	58.961	37.037	17.85	0.00	35.64	2.57
2233	2352	2.492088	TGGAGTCTATGAAGTGGTGTCG	59.508	50.000	0.00	0.00	0.00	4.35
2374	2495	7.301054	CACTCATGTCAAGTAACATTTTCTCC	58.699	38.462	0.00	0.00	37.78	3.71
2393	2515	2.173356	TCCTGAGCCAATCCGAATCATT	59.827	45.455	0.00	0.00	0.00	2.57
2398	2520	6.239120	CCTGAGCCAATCCGAATCATTATTTT	60.239	38.462	0.00	0.00	0.00	1.82
2539	2661	1.003718	GGTACTGTGGGTGGCTCAC	60.004	63.158	0.00	0.00	35.82	3.51
2561	2683	0.830648	CCTGGGAAGCCAGACGATAA	59.169	55.000	0.00	0.00	39.96	1.75
2564	2686	1.906574	TGGGAAGCCAGACGATAAACT	59.093	47.619	0.00	0.00	0.00	2.66
2650	2772	5.188751	TCCAAAACAATCTCCACCAACTTTT	59.811	36.000	0.00	0.00	0.00	2.27
2651	2773	5.879777	CCAAAACAATCTCCACCAACTTTTT	59.120	36.000	0.00	0.00	0.00	1.94
2664	2786	6.406849	CCACCAACTTTTTGATCAAGAAAGGA	60.407	38.462	27.69	8.80	35.30	3.36
2675	2797	5.884232	TGATCAAGAAAGGATCACCAATCTG	59.116	40.000	0.00	0.00	44.51	2.90
2676	2798	4.592942	TCAAGAAAGGATCACCAATCTGG	58.407	43.478	0.00	0.00	45.02	3.86
2703	2825	1.754803	TCTTAGCGGTGACCCTATGTG	59.245	52.381	0.00	0.00	0.00	3.21
2743	2865	7.458038	AACCATGCTTTTGTTAAGTAAAACG	57.542	32.000	0.00	0.00	31.76	3.60
2941	3064	8.830915	TTGCCCAAAGATTATCTTTTATGGTA	57.169	30.769	16.59	13.60	43.62	3.25

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
76	77	0.680061	GTCGGACCTCACAAGGAAGT	59.320	55.000	0.00	0.00	46.67	3.01
91	92	2.231529	CCTGGTAGGATAGAGTGTCGG	58.768	57.143	0.00	0.00	37.67	4.79
141	143	0.688749	GGCTTCTAGGGTCCGGGTTA	60.689	60.000	0.00	0.00	0.00	2.85
168	170	8.408043	AGATGGATGATTTTGTTGTTGTAAGA	57.592	30.769	0.00	0.00	0.00	2.10
179	181	8.574737	GGAAGATAGGAAAGATGGATGATTTTG	58.425	37.037	0.00	0.00	0.00	2.44
184	186	5.072329	GGTGGAAGATAGGAAAGATGGATGA	59.928	44.000	0.00	0.00	0.00	2.92
223	225	3.811702	CCAGCAGGGTGAGGAAGA	58.188	61.111	0.00	0.00	0.00	2.87
236	238	2.824489	GCTAGGCGAAACCCCAGC	60.824	66.667	0.00	0.00	40.58	4.85
279	281	1.925455	CCATCACCACCACCTCCCT	60.925	63.158	0.00	0.00	0.00	4.20
313	315	2.978978	TGAATGTCCTCCTCTGTTCCAA	59.021	45.455	0.00	0.00	0.00	3.53
374	376	0.035056	CTCCTCCAATGCCGACCTTT	60.035	55.000	0.00	0.00	0.00	3.11
384	386	1.765314	CCATTCCTCGTCTCCTCCAAT	59.235	52.381	0.00	0.00	0.00	3.16
397	399	2.911636	CCATCTCCTCTATGCCATTCCT	59.088	50.000	0.00	0.00	0.00	3.36
402	404	1.475169	CGGCCATCTCCTCTATGCCA	61.475	60.000	2.24	0.00	0.00	4.92
420	422	3.083997	CCAGGACCCCCTTCTCCG	61.084	72.222	0.00	0.00	42.02	4.63
422	424	2.301738	CCACCAGGACCCCCTTCTC	61.302	68.421	0.00	0.00	42.02	2.87
450	452	1.327690	TGCCTCCTCTTTATCGCGGT	61.328	55.000	6.13	0.00	0.00	5.68
457	459	1.340017	GCCACACATGCCTCCTCTTTA	60.340	52.381	0.00	0.00	0.00	1.85
528	531	2.743718	CAACGTCCTCCAGCCAGT	59.256	61.111	0.00	0.00	0.00	4.00
541	544	2.746375	CCTCATCCCTCCCCCAACG	61.746	68.421	0.00	0.00	0.00	4.10
548	552	0.466922	CCATGCAACCTCATCCCTCC	60.467	60.000	0.00	0.00	0.00	4.30
578	583	4.391523	GCTCTTTTCTTTTGCACAAAACCA	59.608	37.500	4.47	0.00	35.57	3.67
594	604	2.358737	CCGCCACTCCGCTCTTTT	60.359	61.111	0.00	0.00	0.00	2.27
615	625	3.000825	GCGGTTGCACTTTTACAAAAAGG	59.999	43.478	14.68	6.65	42.15	3.11
632	642	3.376078	CATGCAAGGCCAGCGGTT	61.376	61.111	5.01	0.00	33.85	4.44
672	682	3.802675	GCAAGGGTCCGAGTACATATTCC	60.803	52.174	0.00	0.00	0.00	3.01
758	771	3.985279	CGTACATCACAAGGAAACGAAGA	59.015	43.478	0.00	0.00	34.21	2.87
800	813	2.130821	TATTGAGGCGGGGCAACACA	62.131	55.000	0.00	0.00	44.36	3.72
855	870	4.118168	AGATGGGAGATTTGGTTGTTGT	57.882	40.909	0.00	0.00	0.00	3.32
896	918	1.010462	GAAACACAACGGCGGTGAC	60.010	57.895	34.02	12.85	39.53	3.67
898	920	0.511221	CTAGAAACACAACGGCGGTG	59.489	55.000	25.44	25.44	41.95	4.94
899	921	0.601841	CCTAGAAACACAACGGCGGT	60.602	55.000	13.24	0.00	0.00	5.68
980	1014	4.958581	TCATCTTCTTCTCACATGCCTCTA	59.041	41.667	0.00	0.00	0.00	2.43
988	1022	6.881570	TGAGCATTATCATCTTCTTCTCACA	58.118	36.000	0.00	0.00	0.00	3.58
1005	1039	1.091771	CATCGGCCGACTTGAGCATT	61.092	55.000	33.75	8.42	0.00	3.56
1161	1217	4.155709	TGGCCAGGACATGTTTATTGAAA	58.844	39.130	0.00	0.00	0.00	2.69
1163	1219	3.448093	TGGCCAGGACATGTTTATTGA	57.552	42.857	0.00	0.00	0.00	2.57
1167	1223	2.107378	TGTCTTGGCCAGGACATGTTTA	59.893	45.455	38.59	20.57	41.58	2.01
1314	1370	7.862274	TGAAGGATATCATACCTTGATGAGT	57.138	36.000	4.83	0.00	44.90	3.41
1388	1445	3.432186	CCCAATCTAGATTCGAGTGCCAA	60.432	47.826	15.24	0.00	0.00	4.52
1462	1520	6.927294	ATCGAACCAAATCTACCTTGATTC	57.073	37.500	0.00	0.00	35.82	2.52
1463	1521	6.037172	CGAATCGAACCAAATCTACCTTGATT	59.963	38.462	0.00	0.00	38.19	2.57
1535	1593	1.677518	GGCCGACCAATGTGTACATCA	60.678	52.381	0.00	0.00	35.10	3.07
1705	1770	8.738106	TGATGTTTCTGCATGTTAATCACATAA	58.262	29.630	0.00	0.00	45.06	1.90
1960	2066	1.886542	GTCCAACAACCCCTTGATGTC	59.113	52.381	0.00	0.00	30.09	3.06
2053	2163	2.416162	CCTCTGGCAAGTAGTCGTTCTC	60.416	54.545	0.00	0.00	0.00	2.87
2076	2195	1.361993	CCTGCGGATCTTCTCCTCG	59.638	63.158	0.00	0.00	42.47	4.63
2157	2276	4.642437	TGCAGTTAAAAGGTTGACATGACA	59.358	37.500	0.00	0.00	0.00	3.58
2175	2294	7.951591	ACCAATTAAAACATAAAGAGTGCAGT	58.048	30.769	0.00	0.00	0.00	4.40
2208	2327	3.259374	CACCACTTCATAGACTCCAGTGT	59.741	47.826	0.00	0.00	34.25	3.55
2224	2343	1.048601	AGATGTTCACCGACACCACT	58.951	50.000	0.00	0.00	31.30	4.00
2233	2352	5.182001	AGCATAAACACTGAAGATGTTCACC	59.818	40.000	0.23	0.00	39.36	4.02
2333	2454	4.350368	TGAGTGCTTTAGGTGAATGTCA	57.650	40.909	0.00	0.00	0.00	3.58
2374	2495	5.954296	AATAATGATTCGGATTGGCTCAG	57.046	39.130	0.00	0.00	0.00	3.35
2398	2520	6.892658	AGCATATTGTCCTGTTAAACAACA	57.107	33.333	0.00	0.00	38.14	3.33
2446	2568	7.834803	TCAAATGGTTTATGCAACATCATGTA	58.165	30.769	0.00	0.00	37.07	2.29
2561	2683	2.624838	CTGGTTGGCATTGAAGTCAGTT	59.375	45.455	0.00	0.00	0.00	3.16
2564	2686	1.619654	CCTGGTTGGCATTGAAGTCA	58.380	50.000	0.00	0.00	0.00	3.41
2620	2742	4.766891	GGTGGAGATTGTTTTGGAAGATCA	59.233	41.667	0.00	0.00	0.00	2.92
2633	2755	6.088016	TGATCAAAAAGTTGGTGGAGATTG	57.912	37.500	0.00	0.00	35.29	2.67
2651	2773	5.884232	CAGATTGGTGATCCTTTCTTGATCA	59.116	40.000	0.00	0.00	44.70	2.92
2726	2848	7.465989	TCTGTCCACGTTTTACTTAACAAAAG	58.534	34.615	0.00	0.00	0.00	2.27
2731	2853	9.934190	TTTATTTCTGTCCACGTTTTACTTAAC	57.066	29.630	0.00	0.00	0.00	2.01
2913	3036	8.260114	CCATAAAAGATAATCTTTGGGCAAACT	58.740	33.333	0.00	0.00	45.19	2.66
2914	3037	8.040727	ACCATAAAAGATAATCTTTGGGCAAAC	58.959	33.333	0.00	0.00	45.19	2.93
2915	3038	8.144862	ACCATAAAAGATAATCTTTGGGCAAA	57.855	30.769	0.00	0.00	45.19	3.68
2947	3070	9.646427	AGTGCAACAAAAACATTCTAAAGTTTA	57.354	25.926	0.00	0.00	41.43	2.01
2950	3073	9.646427	TTTAGTGCAACAAAAACATTCTAAAGT	57.354	25.926	0.00	0.00	41.43	2.66
2953	3076	9.646427	AGTTTTAGTGCAACAAAAACATTCTAA	57.354	25.926	23.53	7.70	41.43	2.10
2993	3116	8.983724	CACAAGAAAACTTTAAACACCAAAAGA	58.016	29.630	2.08	0.00	36.43	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.