Multiple sequence alignment - TraesCS5A01G093400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G093400 chr5A 100.000 3160 0 0 1 3160 129721385 129718226 0.000000e+00 5836.0
1 TraesCS5A01G093400 chr5A 100.000 389 0 0 3569 3957 129717817 129717429 0.000000e+00 719.0
2 TraesCS5A01G093400 chr5A 92.222 90 7 0 646 735 66819078 66818989 1.150000e-25 128.0
3 TraesCS5A01G093400 chr5D 92.221 2404 103 31 575 2909 119612783 119610395 0.000000e+00 3326.0
4 TraesCS5A01G093400 chr5D 91.239 331 27 2 3628 3957 119609795 119609466 2.170000e-122 449.0
5 TraesCS5A01G093400 chr5D 81.752 137 21 4 443 579 487537666 487537534 1.160000e-20 111.0
6 TraesCS5A01G093400 chr5D 80.576 139 23 3 436 573 471544397 471544532 1.950000e-18 104.0
7 TraesCS5A01G093400 chr5D 90.769 65 5 1 1 64 561653335 561653399 7.050000e-13 86.1
8 TraesCS5A01G093400 chr5B 94.469 1356 64 3 1555 2908 132539334 132537988 0.000000e+00 2078.0
9 TraesCS5A01G093400 chr5B 90.316 1012 57 15 575 1552 132540398 132539394 0.000000e+00 1288.0
10 TraesCS5A01G093400 chr5B 89.423 208 15 6 2927 3128 132538002 132537796 5.070000e-64 255.0
11 TraesCS5A01G093400 chr5B 93.478 46 3 0 613 658 132540400 132540355 7.100000e-08 69.4
12 TraesCS5A01G093400 chr5B 94.595 37 2 0 22 58 162859367 162859331 1.540000e-04 58.4
13 TraesCS5A01G093400 chr5B 100.000 28 0 0 3013 3040 559160020 559159993 7.000000e-03 52.8
14 TraesCS5A01G093400 chr7D 84.590 610 62 13 1 580 65640675 65641282 9.530000e-161 577.0
15 TraesCS5A01G093400 chr7D 84.677 372 55 2 3588 3957 629822229 629821858 1.740000e-98 370.0
16 TraesCS5A01G093400 chr7D 80.000 145 25 4 436 579 205572850 205572709 1.950000e-18 104.0
17 TraesCS5A01G093400 chr7D 85.714 70 9 1 669 737 7708830 7708899 5.490000e-09 73.1
18 TraesCS5A01G093400 chr7D 80.000 105 14 5 3035 3135 528031470 528031571 1.970000e-08 71.3
19 TraesCS5A01G093400 chr4D 85.523 373 51 3 3587 3957 113151010 113150639 1.720000e-103 387.0
20 TraesCS5A01G093400 chr1D 87.037 324 34 8 3637 3956 217318623 217318942 3.760000e-95 359.0
21 TraesCS5A01G093400 chr1D 87.736 106 9 3 473 577 433201680 433201782 1.930000e-23 121.0
22 TraesCS5A01G093400 chr2D 86.728 324 38 5 3635 3956 197834683 197834363 4.860000e-94 355.0
23 TraesCS5A01G093400 chr2D 83.582 134 19 2 443 576 612888262 612888132 5.370000e-24 122.0
24 TraesCS5A01G093400 chr4A 85.970 335 42 5 3626 3956 470103140 470102807 1.750000e-93 353.0
25 TraesCS5A01G093400 chr4A 80.921 152 22 6 436 584 652268434 652268287 3.230000e-21 113.0
26 TraesCS5A01G093400 chr2B 84.940 332 46 4 3629 3957 642952169 642951839 2.280000e-87 333.0
27 TraesCS5A01G093400 chr2B 92.045 88 7 0 646 733 188817863 188817776 1.490000e-24 124.0
28 TraesCS5A01G093400 chr2B 82.443 131 20 3 443 573 744816542 744816669 1.160000e-20 111.0
29 TraesCS5A01G093400 chr6A 83.008 359 59 2 3600 3956 602599471 602599829 1.370000e-84 324.0
30 TraesCS5A01G093400 chr3B 82.574 373 56 8 3590 3957 432255543 432255175 1.770000e-83 320.0
31 TraesCS5A01G093400 chr3B 90.476 63 5 1 3 64 295023493 295023555 9.110000e-12 82.4
32 TraesCS5A01G093400 chr3B 91.304 46 4 0 689 734 644300345 644300300 3.300000e-06 63.9
33 TraesCS5A01G093400 chr7A 77.955 313 61 3 22 327 501095303 501094992 5.220000e-44 189.0
34 TraesCS5A01G093400 chr7A 85.849 106 12 2 474 579 24852209 24852107 4.180000e-20 110.0
35 TraesCS5A01G093400 chr3A 77.204 329 65 4 3 324 425589970 425590295 2.430000e-42 183.0
36 TraesCS5A01G093400 chr3A 90.323 93 9 0 646 738 25404912 25405004 5.370000e-24 122.0
37 TraesCS5A01G093400 chr6D 77.406 239 45 3 3 233 232749207 232748970 2.480000e-27 134.0
38 TraesCS5A01G093400 chr6D 91.525 59 4 1 7 64 86943419 86943361 3.280000e-11 80.5
39 TraesCS5A01G093400 chr6D 88.462 52 6 0 617 668 55078171 55078120 3.300000e-06 63.9
40 TraesCS5A01G093400 chr6D 100.000 28 0 0 3011 3038 131942085 131942058 7.000000e-03 52.8
41 TraesCS5A01G093400 chr1A 91.111 90 8 0 646 735 21253615 21253704 5.370000e-24 122.0
42 TraesCS5A01G093400 chr1A 97.143 35 1 0 699 733 461049403 461049369 4.270000e-05 60.2
43 TraesCS5A01G093400 chr6B 86.154 65 8 1 1 64 647460177 647460241 7.100000e-08 69.4
44 TraesCS5A01G093400 chr1B 81.707 82 7 5 3061 3136 465985850 465985771 1.190000e-05 62.1
45 TraesCS5A01G093400 chr1B 86.275 51 6 1 3 53 601109635 601109586 2.000000e-03 54.7
46 TraesCS5A01G093400 chr1B 100.000 28 0 0 3011 3038 599229937 599229910 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G093400 chr5A 129717429 129721385 3956 True 3277.5 5836 100.0000 1 3957 2 chr5A.!!$R2 3956
1 TraesCS5A01G093400 chr5D 119609466 119612783 3317 True 1887.5 3326 91.7300 575 3957 2 chr5D.!!$R2 3382
2 TraesCS5A01G093400 chr5B 132537796 132540400 2604 True 922.6 2078 91.9215 575 3128 4 chr5B.!!$R3 2553
3 TraesCS5A01G093400 chr7D 65640675 65641282 607 False 577.0 577 84.5900 1 580 1 chr7D.!!$F2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.096976 ACATAATGACGTGCAAGCGC 59.903 50.0 0.0 0.0 39.24 5.92 F
1256 1358 0.104409 ACCTCCTGGTTCCTCCTGTT 60.104 55.0 0.0 0.0 46.05 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1654 0.501435 GACCAGTTTGTCGTCGTTCG 59.499 55.0 0.0 0.0 41.41 3.95 R
3093 3263 0.028374 CGTTTTGACCCAACGGACAC 59.972 55.0 0.0 0.0 42.68 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.050778 AGATGTATTCTGGCGATGTTTAAAAA 57.949 30.769 0.00 0.00 31.79 1.94
35 36 5.455525 GGCGATGTTTAAAAAGAATCCATCG 59.544 40.000 21.41 21.41 41.25 3.84
55 56 4.016706 AAGGGTTCCGAGGCCACG 62.017 66.667 16.33 16.33 0.00 4.94
64 65 2.264794 GAGGCCACGTCGTTGGAT 59.735 61.111 5.01 5.32 39.24 3.41
79 80 3.552068 CGTTGGATGGGGTTGAAAGTTTC 60.552 47.826 8.75 8.75 0.00 2.78
86 87 2.484770 GGGGTTGAAAGTTTCCAAAGCC 60.485 50.000 20.66 20.66 34.36 4.35
103 104 7.375053 TCCAAAGCCTTTTACAACATAATGAC 58.625 34.615 0.00 0.00 0.00 3.06
108 109 5.694816 CCTTTTACAACATAATGACGTGCA 58.305 37.500 0.00 0.00 0.00 4.57
111 112 3.201726 ACAACATAATGACGTGCAAGC 57.798 42.857 0.00 0.00 0.00 4.01
113 114 0.096976 ACATAATGACGTGCAAGCGC 59.903 50.000 0.00 0.00 39.24 5.92
119 120 0.669012 TGACGTGCAAGCGCTGATAA 60.669 50.000 12.58 0.00 39.64 1.75
121 122 0.948623 ACGTGCAAGCGCTGATAACA 60.949 50.000 12.58 1.80 39.64 2.41
122 123 0.165727 CGTGCAAGCGCTGATAACAA 59.834 50.000 12.58 0.00 39.64 2.83
123 124 1.399599 CGTGCAAGCGCTGATAACAAA 60.400 47.619 12.58 0.00 39.64 2.83
125 126 2.848302 GTGCAAGCGCTGATAACAAATC 59.152 45.455 12.58 0.00 39.64 2.17
127 128 3.057666 TGCAAGCGCTGATAACAAATCAA 60.058 39.130 12.58 0.00 39.64 2.57
128 129 3.545078 GCAAGCGCTGATAACAAATCAAG 59.455 43.478 12.58 0.00 34.30 3.02
133 139 6.624423 AGCGCTGATAACAAATCAAGAAAAT 58.376 32.000 10.39 0.00 0.00 1.82
163 169 4.094887 ACAAATGTCATCGCACAAGGTATC 59.905 41.667 0.00 0.00 0.00 2.24
170 177 4.631377 TCATCGCACAAGGTATCTTTTCAG 59.369 41.667 0.00 0.00 0.00 3.02
235 264 6.463995 TGAACTAGTTTGGCTCATTTTTGT 57.536 33.333 10.02 0.00 0.00 2.83
250 279 7.218204 GCTCATTTTTGTATCATGACGGTAAAC 59.782 37.037 0.00 0.00 0.00 2.01
258 287 9.872721 TTGTATCATGACGGTAAACTATGTTTA 57.127 29.630 0.00 0.00 0.00 2.01
301 330 0.969149 TCGAGTCAACCATGTCTGCT 59.031 50.000 0.00 0.00 0.00 4.24
316 345 2.034685 GTCTGCTCCCAAGAAAACCAAC 59.965 50.000 0.00 0.00 0.00 3.77
327 356 4.718940 AGAAAACCAACTTTGTGGACAG 57.281 40.909 0.00 0.00 41.65 3.51
329 358 5.258051 AGAAAACCAACTTTGTGGACAGTA 58.742 37.500 0.00 0.00 41.65 2.74
340 369 3.708451 TGTGGACAGTAGAGATGCCTTA 58.292 45.455 0.00 0.00 0.00 2.69
350 379 8.486210 ACAGTAGAGATGCCTTATTATCAAACA 58.514 33.333 0.00 0.00 0.00 2.83
359 388 8.347004 TGCCTTATTATCAAACAATGAGTTGA 57.653 30.769 6.59 6.59 42.53 3.18
383 412 9.577222 TGAAATGCCTTATGAAAGATGATATGA 57.423 29.630 0.00 0.00 34.37 2.15
392 421 9.563748 TTATGAAAGATGATATGATCTTGCACA 57.436 29.630 23.29 18.95 46.45 4.57
400 429 5.297527 TGATATGATCTTGCACAATGGTGTC 59.702 40.000 1.31 0.00 46.95 3.67
423 452 3.689649 AGACCAATCGCATAACCTTTGTC 59.310 43.478 0.00 0.00 0.00 3.18
441 470 4.875544 TGTCCTTAATAATCGCAAGTGC 57.124 40.909 0.00 0.00 39.48 4.40
453 482 1.008538 CAAGTGCGTGGGCTTCAAC 60.009 57.895 0.00 0.00 40.82 3.18
462 491 2.213499 GTGGGCTTCAACTATCATCCG 58.787 52.381 0.00 0.00 0.00 4.18
470 499 3.123050 TCAACTATCATCCGATTGTGCG 58.877 45.455 0.00 0.00 37.61 5.34
471 500 2.866156 CAACTATCATCCGATTGTGCGT 59.134 45.455 0.00 0.00 37.61 5.24
475 504 0.320334 TCATCCGATTGTGCGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
479 508 3.233684 TCCGATTGTGCGTGTGTTATA 57.766 42.857 0.00 0.00 0.00 0.98
492 521 6.475402 TGCGTGTGTTATATTGTCTCTACATG 59.525 38.462 0.00 0.00 34.97 3.21
550 579 5.186198 TCTAGCAAAGTATTTCAGAAGCCC 58.814 41.667 0.00 0.00 35.03 5.19
553 582 3.670627 GCAAAGTATTTCAGAAGCCCGTG 60.671 47.826 0.00 0.00 35.03 4.94
573 602 1.714899 GCAACGCACGGGCATTCTAT 61.715 55.000 11.77 0.00 41.24 1.98
576 605 2.543777 ACGCACGGGCATTCTATTAT 57.456 45.000 11.77 0.00 41.24 1.28
753 790 5.827267 TGCCTTAATGTAATTGCTATGCTCA 59.173 36.000 0.00 0.00 36.99 4.26
785 822 2.171237 TGACAGTGGCATCTAATCCCAG 59.829 50.000 0.00 0.00 0.00 4.45
788 825 1.414181 AGTGGCATCTAATCCCAGTCG 59.586 52.381 0.00 0.00 0.00 4.18
889 941 2.682856 CAACTTTACCCGACCCATCATG 59.317 50.000 0.00 0.00 0.00 3.07
904 956 4.267536 CCATCATGATCACAAGACAAGGT 58.732 43.478 4.86 0.00 0.00 3.50
965 1047 2.971452 GGGTCCCGATCCGATAGC 59.029 66.667 0.00 0.00 0.00 2.97
1027 1109 2.202676 GCGGAGAGAAGACAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
1059 1151 4.927267 TCCTCTTTCCTGCCATTTCTAA 57.073 40.909 0.00 0.00 0.00 2.10
1133 1229 2.444706 CATGGAGGGGAGGCGAGA 60.445 66.667 0.00 0.00 0.00 4.04
1241 1343 0.464735 TCTCGCTGCTCTCCTACCTC 60.465 60.000 0.00 0.00 0.00 3.85
1245 1347 1.398958 GCTGCTCTCCTACCTCCTGG 61.399 65.000 0.00 0.00 39.83 4.45
1253 1355 0.340208 CCTACCTCCTGGTTCCTCCT 59.660 60.000 0.00 0.00 46.05 3.69
1256 1358 0.104409 ACCTCCTGGTTCCTCCTGTT 60.104 55.000 0.00 0.00 46.05 3.16
1261 1363 1.552792 CCTGGTTCCTCCTGTTCTCTC 59.447 57.143 0.00 0.00 37.07 3.20
1337 1439 2.734673 CGCCTCGCTCTTGAGCAAC 61.735 63.158 20.59 7.13 34.56 4.17
1344 1446 0.368227 GCTCTTGAGCAACGATGACG 59.632 55.000 16.71 0.00 38.97 4.35
1366 1468 3.868757 TCTCGAATCCGTCAAGAATGT 57.131 42.857 0.00 0.00 37.05 2.71
1374 1476 0.298707 CGTCAAGAATGTCGGCATCG 59.701 55.000 1.37 0.00 35.00 3.84
1375 1477 0.652592 GTCAAGAATGTCGGCATCGG 59.347 55.000 1.37 0.00 33.50 4.18
1415 1517 0.768221 AAGACAGTGGGCAAGAGGGA 60.768 55.000 0.00 0.00 0.00 4.20
1487 1589 1.536284 GGTGATACTGCTACGGCTGAC 60.536 57.143 0.00 0.00 40.03 3.51
1517 1619 6.835819 TTCAGGAGACTCGAGATAAAAGAA 57.164 37.500 21.68 12.83 40.21 2.52
1523 1625 5.642686 AGACTCGAGATAAAAGAAGTTCGG 58.357 41.667 21.68 0.00 0.00 4.30
1545 1647 4.376146 GGCTGATGGATTCTCTCAAGTAC 58.624 47.826 0.00 0.00 0.00 2.73
1552 1654 3.067040 GGATTCTCTCAAGTACCTCGGAC 59.933 52.174 0.00 0.00 0.00 4.79
1624 1783 0.549950 ACCATGGCTGATTCAGAGGG 59.450 55.000 17.87 10.70 32.44 4.30
1683 1842 3.564511 GATTGGTTTGTGGATGAACACG 58.435 45.455 0.00 0.00 44.21 4.49
1714 1873 0.318441 GACAGCAGTAGCACACCAGA 59.682 55.000 0.00 0.00 45.49 3.86
1805 1964 0.175989 GAGGGATGTCACCGGACTTC 59.824 60.000 9.46 4.38 44.61 3.01
1836 1995 2.819608 AGCAAGCAAAATATGGTCGTGT 59.180 40.909 0.00 0.00 39.29 4.49
1852 2011 4.201589 GGTCGTGTCATCAAATACTTCGTG 60.202 45.833 0.00 0.00 0.00 4.35
1893 2052 5.864474 AGCGACGAATATGGTGAAGAATATC 59.136 40.000 0.00 0.00 0.00 1.63
2060 2219 6.089249 AGTACCCAAGAAAAAGATGCAAAG 57.911 37.500 0.00 0.00 0.00 2.77
2132 2291 6.025280 TCGTGAAAAGCAAGAAGTACAAAAC 58.975 36.000 0.00 0.00 31.94 2.43
2180 2339 0.689055 ATGCAGAGCAGAGTGTTGGA 59.311 50.000 0.00 0.00 43.65 3.53
2226 2385 1.288350 CAGCGAGAAGGAAGCATCAG 58.712 55.000 0.00 0.00 0.00 2.90
2336 2495 2.092646 AGAGGTTACCAAACACAGCACA 60.093 45.455 3.51 0.00 37.34 4.57
2337 2496 2.290641 GAGGTTACCAAACACAGCACAG 59.709 50.000 3.51 0.00 37.34 3.66
2338 2497 1.269051 GGTTACCAAACACAGCACAGC 60.269 52.381 0.00 0.00 37.34 4.40
2339 2498 1.403679 GTTACCAAACACAGCACAGCA 59.596 47.619 0.00 0.00 35.56 4.41
2340 2499 1.308047 TACCAAACACAGCACAGCAG 58.692 50.000 0.00 0.00 0.00 4.24
2341 2500 0.394216 ACCAAACACAGCACAGCAGA 60.394 50.000 0.00 0.00 0.00 4.26
2373 2532 1.202568 CCGATCCTGCATCTGCTGTAA 60.203 52.381 3.53 0.00 42.66 2.41
2410 2569 2.169769 AGAACCGTCAGACACCAAGAAA 59.830 45.455 0.41 0.00 0.00 2.52
2411 2570 2.930826 ACCGTCAGACACCAAGAAAT 57.069 45.000 0.41 0.00 0.00 2.17
2453 2612 0.888619 ATGACGACGAAGCCAGAGAA 59.111 50.000 0.00 0.00 0.00 2.87
2484 2643 3.102972 CAGGAGAGTCTGGGAGATGAAA 58.897 50.000 0.00 0.00 0.00 2.69
2490 2649 5.523588 AGAGTCTGGGAGATGAAACTGATA 58.476 41.667 0.00 0.00 0.00 2.15
2567 2728 7.656137 AGTTTTCTTCATTAAGTAAGCTGTCGA 59.344 33.333 0.00 0.00 34.06 4.20
2596 2757 0.608035 TCCCGGGTTCATGTTTCAGC 60.608 55.000 22.86 0.00 0.00 4.26
2612 2773 1.988107 TCAGCTGGATTTGAAGGGAGT 59.012 47.619 15.13 0.00 0.00 3.85
2617 2778 2.686915 CTGGATTTGAAGGGAGTGCATC 59.313 50.000 0.00 0.00 0.00 3.91
2694 2855 0.592637 TTGATGTGTTTGCTGGCTCG 59.407 50.000 0.00 0.00 0.00 5.03
2723 2884 7.805071 GGATTAAATGAAAGGTGATGCTATTCG 59.195 37.037 0.00 0.00 0.00 3.34
2876 3037 6.504398 TGTCTCAAACTAGGATAACATAGCG 58.496 40.000 0.00 0.00 34.28 4.26
2880 3041 7.014326 TCTCAAACTAGGATAACATAGCGACAT 59.986 37.037 0.00 0.00 34.28 3.06
2898 3059 7.537715 AGCGACATTTATTTTCATTGTGATGA 58.462 30.769 0.00 0.00 40.46 2.92
2964 3125 3.921119 TTGTGAATTGTCATGACTGCC 57.079 42.857 25.55 12.82 35.80 4.85
2970 3131 4.142622 TGAATTGTCATGACTGCCGAAATC 60.143 41.667 25.55 13.96 0.00 2.17
3063 3231 8.958119 TTGTACTAAATCAAAGACACTTGAGT 57.042 30.769 0.00 0.00 38.66 3.41
3072 3242 3.107642 AGACACTTGAGTAACCCAACG 57.892 47.619 0.00 0.00 0.00 4.10
3074 3244 1.134340 ACACTTGAGTAACCCAACGCA 60.134 47.619 0.00 0.00 0.00 5.24
3076 3246 0.872388 CTTGAGTAACCCAACGCACC 59.128 55.000 0.00 0.00 0.00 5.01
3087 3257 1.228003 AACGCACCGACCCATTTCA 60.228 52.632 0.00 0.00 0.00 2.69
3091 3261 0.655733 GCACCGACCCATTTCATACG 59.344 55.000 0.00 0.00 0.00 3.06
3092 3262 2.010043 GCACCGACCCATTTCATACGT 61.010 52.381 0.00 0.00 0.00 3.57
3093 3263 1.663643 CACCGACCCATTTCATACGTG 59.336 52.381 0.00 0.00 0.00 4.49
3094 3264 1.276989 ACCGACCCATTTCATACGTGT 59.723 47.619 0.00 0.00 0.00 4.49
3095 3265 1.663643 CCGACCCATTTCATACGTGTG 59.336 52.381 5.87 5.87 0.00 3.82
3097 3267 2.347452 CGACCCATTTCATACGTGTGTC 59.653 50.000 12.29 0.00 0.00 3.67
3098 3268 2.676342 GACCCATTTCATACGTGTGTCC 59.324 50.000 12.29 0.00 0.00 4.02
3099 3269 1.663643 CCCATTTCATACGTGTGTCCG 59.336 52.381 12.29 0.25 0.00 4.79
3100 3270 2.343101 CCATTTCATACGTGTGTCCGT 58.657 47.619 12.29 0.00 44.50 4.69
3101 3271 2.739913 CCATTTCATACGTGTGTCCGTT 59.260 45.455 12.29 0.00 42.00 4.44
3102 3272 3.424302 CCATTTCATACGTGTGTCCGTTG 60.424 47.826 12.29 4.76 42.00 4.10
3103 3273 1.785768 TTCATACGTGTGTCCGTTGG 58.214 50.000 12.29 0.00 42.00 3.77
3104 3274 0.038067 TCATACGTGTGTCCGTTGGG 60.038 55.000 12.29 0.00 42.00 4.12
3122 3296 3.233684 GGGTCAAAACGGACACAAAAA 57.766 42.857 0.00 0.00 40.95 1.94
3148 3342 0.863957 CAACGCGTCCGCTTTTTGTT 60.864 50.000 14.44 3.32 39.32 2.83
3149 3343 0.590481 AACGCGTCCGCTTTTTGTTC 60.590 50.000 14.44 0.00 39.32 3.18
3153 3347 1.652563 GTCCGCTTTTTGTTCGCCT 59.347 52.632 0.00 0.00 0.00 5.52
3585 3779 3.637273 ACCTCCTTGGACCCGCAC 61.637 66.667 0.00 0.00 39.71 5.34
3586 3780 4.410400 CCTCCTTGGACCCGCACC 62.410 72.222 0.00 0.00 38.35 5.01
3587 3781 4.410400 CTCCTTGGACCCGCACCC 62.410 72.222 0.00 0.00 0.00 4.61
3610 3804 3.791586 GTCCCTGGCCAGCTCCTC 61.792 72.222 28.39 11.09 0.00 3.71
3614 3808 4.154347 CTGGCCAGCTCCTCCGAC 62.154 72.222 22.33 0.00 0.00 4.79
3616 3810 3.706373 GGCCAGCTCCTCCGACAA 61.706 66.667 0.00 0.00 0.00 3.18
3617 3811 2.435059 GCCAGCTCCTCCGACAAC 60.435 66.667 0.00 0.00 0.00 3.32
3618 3812 2.125912 CCAGCTCCTCCGACAACG 60.126 66.667 0.00 0.00 39.43 4.10
3619 3813 2.811317 CAGCTCCTCCGACAACGC 60.811 66.667 0.00 0.00 38.29 4.84
3620 3814 3.303135 AGCTCCTCCGACAACGCA 61.303 61.111 0.00 0.00 38.29 5.24
3621 3815 2.811317 GCTCCTCCGACAACGCAG 60.811 66.667 0.00 0.00 38.29 5.18
3623 3817 4.373116 TCCTCCGACAACGCAGGC 62.373 66.667 0.00 0.00 46.01 4.85
3624 3818 4.680237 CCTCCGACAACGCAGGCA 62.680 66.667 0.00 0.00 40.68 4.75
3625 3819 3.414700 CTCCGACAACGCAGGCAC 61.415 66.667 0.00 0.00 38.29 5.01
3629 3823 4.077188 GACAACGCAGGCACGCTC 62.077 66.667 0.00 0.00 36.19 5.03
3635 3829 4.724602 GCAGGCACGCTCGTCTGA 62.725 66.667 13.12 0.00 0.00 3.27
3636 3830 2.807045 CAGGCACGCTCGTCTGAC 60.807 66.667 5.51 0.00 0.00 3.51
3637 3831 4.406173 AGGCACGCTCGTCTGACG 62.406 66.667 23.33 23.33 44.19 4.35
3722 3916 2.437343 GCCTGCTTCTTCGACGACG 61.437 63.158 0.00 0.00 41.26 5.12
3736 3930 1.777199 CGACGCCCGTAAGTTGTTC 59.223 57.895 0.00 0.00 0.00 3.18
3748 3942 0.463116 AGTTGTTCGACGGTTTGCCT 60.463 50.000 0.00 0.00 0.00 4.75
3768 3962 3.679389 CTGCAAGGTACAAATGGACTCT 58.321 45.455 0.00 0.00 0.00 3.24
3771 3965 3.679389 CAAGGTACAAATGGACTCTGCT 58.321 45.455 0.00 0.00 0.00 4.24
3788 3983 3.070018 CTGCTGACGAGTTCTTTTCCAT 58.930 45.455 0.00 0.00 0.00 3.41
3795 3990 8.234546 GCTGACGAGTTCTTTTCCATAATTTTA 58.765 33.333 0.00 0.00 0.00 1.52
3844 4039 1.126488 GATGAGGAGATGGTGGCTGA 58.874 55.000 0.00 0.00 0.00 4.26
3851 4046 2.012673 GAGATGGTGGCTGATGTGTTC 58.987 52.381 0.00 0.00 0.00 3.18
3885 4080 0.104304 CCTTAGTAATCAGCGGCCGT 59.896 55.000 28.70 11.01 0.00 5.68
3890 4085 0.519961 GTAATCAGCGGCCGTTGTTT 59.480 50.000 36.06 33.70 0.00 2.83
3891 4086 0.800012 TAATCAGCGGCCGTTGTTTC 59.200 50.000 36.06 15.63 0.00 2.78
3893 4088 3.342627 CAGCGGCCGTTGTTTCGA 61.343 61.111 31.24 0.00 0.00 3.71
3928 4123 0.670546 CACACTCCGGCGTTGAATCT 60.671 55.000 6.01 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.475220 TGGATTCTTTTTAAACATCGCCAGA 59.525 36.000 0.00 0.00 0.00 3.86
9 10 5.708948 TGGATTCTTTTTAAACATCGCCAG 58.291 37.500 0.00 0.00 0.00 4.85
20 21 5.566469 ACCCTTGTCGATGGATTCTTTTTA 58.434 37.500 0.00 0.00 0.00 1.52
25 26 2.092914 GGAACCCTTGTCGATGGATTCT 60.093 50.000 8.44 0.00 0.00 2.40
35 36 2.046217 GGCCTCGGAACCCTTGTC 60.046 66.667 0.00 0.00 0.00 3.18
55 56 1.539827 CTTTCAACCCCATCCAACGAC 59.460 52.381 0.00 0.00 0.00 4.34
64 65 2.169561 GCTTTGGAAACTTTCAACCCCA 59.830 45.455 3.93 0.00 0.00 4.96
79 80 6.307800 CGTCATTATGTTGTAAAAGGCTTTGG 59.692 38.462 14.19 0.00 0.00 3.28
86 87 6.183359 GCTTGCACGTCATTATGTTGTAAAAG 60.183 38.462 0.00 1.96 0.00 2.27
103 104 0.165727 TTGTTATCAGCGCTTGCACG 59.834 50.000 7.50 0.00 42.66 5.34
108 109 5.627499 TTCTTGATTTGTTATCAGCGCTT 57.373 34.783 7.50 0.00 0.00 4.68
111 112 8.894409 TGTATTTTCTTGATTTGTTATCAGCG 57.106 30.769 0.00 0.00 0.00 5.18
127 128 9.289303 GCGATGACATTTGTATTTGTATTTTCT 57.711 29.630 0.00 0.00 0.00 2.52
128 129 9.071221 TGCGATGACATTTGTATTTGTATTTTC 57.929 29.630 0.00 0.00 0.00 2.29
133 139 6.487689 TGTGCGATGACATTTGTATTTGTA 57.512 33.333 0.00 0.00 0.00 2.41
141 147 2.995466 ACCTTGTGCGATGACATTTG 57.005 45.000 0.00 0.00 0.00 2.32
170 177 9.431887 TGACAAAGTAAGGACTGATAATAACAC 57.568 33.333 0.00 0.00 35.52 3.32
207 214 3.879998 TGAGCCAAACTAGTTCAACACA 58.120 40.909 8.95 4.82 0.00 3.72
219 226 6.033831 CGTCATGATACAAAAATGAGCCAAAC 59.966 38.462 0.00 0.00 31.21 2.93
279 308 2.932622 GCAGACATGGTTGACTCGATGT 60.933 50.000 0.00 0.00 38.92 3.06
284 313 1.677217 GGGAGCAGACATGGTTGACTC 60.677 57.143 0.00 6.22 37.25 3.36
291 320 2.205022 TTTCTTGGGAGCAGACATGG 57.795 50.000 0.00 0.00 0.00 3.66
301 330 3.196685 CCACAAAGTTGGTTTTCTTGGGA 59.803 43.478 0.00 0.00 0.00 4.37
316 345 3.055530 AGGCATCTCTACTGTCCACAAAG 60.056 47.826 0.00 0.00 0.00 2.77
329 358 8.985315 TCATTGTTTGATAATAAGGCATCTCT 57.015 30.769 0.00 0.00 0.00 3.10
340 369 8.316214 AGGCATTTCAACTCATTGTTTGATAAT 58.684 29.630 4.89 5.53 36.63 1.28
350 379 8.125978 TCTTTCATAAGGCATTTCAACTCATT 57.874 30.769 0.00 0.00 32.02 2.57
383 412 2.816087 GTCTGACACCATTGTGCAAGAT 59.184 45.455 2.24 0.00 46.86 2.40
400 429 3.440173 ACAAAGGTTATGCGATTGGTCTG 59.560 43.478 0.00 0.00 0.00 3.51
410 439 6.856426 GCGATTATTAAGGACAAAGGTTATGC 59.144 38.462 0.00 0.00 0.00 3.14
441 470 2.213499 GGATGATAGTTGAAGCCCACG 58.787 52.381 0.00 0.00 0.00 4.94
442 471 2.158957 TCGGATGATAGTTGAAGCCCAC 60.159 50.000 0.00 0.00 0.00 4.61
453 482 2.219445 CACACGCACAATCGGATGATAG 59.781 50.000 0.00 0.00 33.40 2.08
462 491 6.036083 AGAGACAATATAACACACGCACAATC 59.964 38.462 0.00 0.00 0.00 2.67
492 521 9.956720 ACAAAGATAATGCATGCTAGATTTTAC 57.043 29.630 20.33 5.77 0.00 2.01
536 565 0.733150 GCCACGGGCTTCTGAAATAC 59.267 55.000 7.58 0.00 46.69 1.89
553 582 4.776647 GAATGCCCGTGCGTTGCC 62.777 66.667 0.86 0.00 46.55 4.52
604 633 8.306761 CAAGTTTTAGAAAAATAGGTCTGCCAT 58.693 33.333 0.00 0.00 37.19 4.40
608 637 7.657336 TGGCAAGTTTTAGAAAAATAGGTCTG 58.343 34.615 0.00 0.00 0.00 3.51
753 790 1.303074 CACTGTCATGCTGGCCACT 60.303 57.895 0.00 0.00 0.00 4.00
785 822 5.929415 GGGAAATTGATCTTATCTCTCCGAC 59.071 44.000 0.00 0.00 0.00 4.79
788 825 6.000840 GTGGGGAAATTGATCTTATCTCTCC 58.999 44.000 0.00 0.00 0.00 3.71
965 1047 4.091365 GGCGGAAATTTTTGAAATCTTCCG 59.909 41.667 25.00 25.00 45.55 4.30
1027 1109 1.657822 GAAAGAGGATTCCAGGCGTC 58.342 55.000 5.29 0.00 0.00 5.19
1059 1151 5.353678 CCGCAAGAATTCTTCTCTTCTCAAT 59.646 40.000 17.91 0.00 39.61 2.57
1241 1343 1.552792 GAGAGAACAGGAGGAACCAGG 59.447 57.143 0.00 0.00 42.04 4.45
1245 1347 2.094442 CGAAGGAGAGAACAGGAGGAAC 60.094 54.545 0.00 0.00 0.00 3.62
1253 1355 1.975327 CAGGGCGAAGGAGAGAACA 59.025 57.895 0.00 0.00 0.00 3.18
1256 1358 1.610673 AAGCAGGGCGAAGGAGAGA 60.611 57.895 0.00 0.00 0.00 3.10
1261 1363 4.729918 AGGCAAGCAGGGCGAAGG 62.730 66.667 0.00 0.00 38.57 3.46
1337 1439 1.069838 ACGGATTCGAGATCGTCATCG 60.070 52.381 0.00 5.86 40.80 3.84
1344 1446 4.363999 ACATTCTTGACGGATTCGAGATC 58.636 43.478 0.00 0.00 43.34 2.75
1415 1517 1.354368 TCCCCTTTCGCCTCTGAATTT 59.646 47.619 0.00 0.00 0.00 1.82
1473 1575 1.276421 AGAATTGTCAGCCGTAGCAGT 59.724 47.619 0.00 0.00 43.56 4.40
1487 1589 5.065704 TCTCGAGTCTCCTGAAAGAATTG 57.934 43.478 13.13 0.00 34.07 2.32
1517 1619 1.139853 GAGAATCCATCAGCCCGAACT 59.860 52.381 0.00 0.00 0.00 3.01
1523 1625 3.557228 ACTTGAGAGAATCCATCAGCC 57.443 47.619 0.00 0.00 33.66 4.85
1545 1647 2.202272 GTCGTCGTTCGTCCGAGG 60.202 66.667 11.12 11.12 42.38 4.63
1552 1654 0.501435 GACCAGTTTGTCGTCGTTCG 59.499 55.000 0.00 0.00 41.41 3.95
1624 1783 0.657840 CTGACGCCATCCGGAAAATC 59.342 55.000 9.01 2.74 42.52 2.17
1683 1842 1.274728 ACTGCTGTCCACTCTGATGTC 59.725 52.381 0.00 0.00 0.00 3.06
1832 1991 4.384547 TGACACGAAGTATTTGATGACACG 59.615 41.667 0.00 0.00 41.61 4.49
1836 1995 7.041107 TGATGATGACACGAAGTATTTGATGA 58.959 34.615 0.00 0.00 41.61 2.92
1852 2011 6.543736 TCGTCGCTAATACTATGATGATGAC 58.456 40.000 0.00 0.00 0.00 3.06
1868 2027 4.642445 TTCTTCACCATATTCGTCGCTA 57.358 40.909 0.00 0.00 0.00 4.26
1893 2052 4.275196 TGATAACTCCTTCCTATCGTCACG 59.725 45.833 0.00 0.00 0.00 4.35
2060 2219 4.873827 TCAACAACCAGTTCAAGTACACTC 59.126 41.667 0.00 0.00 38.74 3.51
2132 2291 0.389817 TGATCAGAACTTCGGGCACG 60.390 55.000 0.00 0.00 42.74 5.34
2226 2385 4.096382 ACAAACAGAATGAAGTGACACCAC 59.904 41.667 0.84 0.00 39.69 4.16
2336 2495 2.350514 GGTGCCTCTGCTTCTGCT 59.649 61.111 0.00 0.00 40.48 4.24
2337 2496 2.749441 GGGTGCCTCTGCTTCTGC 60.749 66.667 0.00 0.00 38.71 4.26
2338 2497 2.249413 ATCGGGTGCCTCTGCTTCTG 62.249 60.000 0.00 0.00 38.71 3.02
2339 2498 1.965754 GATCGGGTGCCTCTGCTTCT 61.966 60.000 0.00 0.00 38.71 2.85
2340 2499 1.522580 GATCGGGTGCCTCTGCTTC 60.523 63.158 0.00 0.00 38.71 3.86
2341 2500 2.586792 GATCGGGTGCCTCTGCTT 59.413 61.111 0.00 0.00 38.71 3.91
2373 2532 4.037923 ACGGTTCTCAAAGATGTTGCAAAT 59.962 37.500 0.00 0.00 0.00 2.32
2410 2569 3.355378 TCGAAACCATCAAATGCCTCAT 58.645 40.909 0.00 0.00 0.00 2.90
2411 2570 2.749076 CTCGAAACCATCAAATGCCTCA 59.251 45.455 0.00 0.00 0.00 3.86
2453 2612 0.902516 GACTCTCCTGTGAGGCCACT 60.903 60.000 5.01 0.00 43.55 4.00
2484 2643 7.011482 GGCAGAGTCATCGTTAATTTTATCAGT 59.989 37.037 0.00 0.00 0.00 3.41
2490 2649 4.330074 CGAGGCAGAGTCATCGTTAATTTT 59.670 41.667 0.00 0.00 35.79 1.82
2567 2728 2.952116 TGAACCCGGGAAAATTTCAGT 58.048 42.857 32.02 0.00 0.00 3.41
2596 2757 2.205022 TGCACTCCCTTCAAATCCAG 57.795 50.000 0.00 0.00 0.00 3.86
2694 2855 4.202253 GCATCACCTTTCATTTAATCCCCC 60.202 45.833 0.00 0.00 0.00 5.40
2723 2884 1.003233 GTGGACCAGAGGAAGCCAC 60.003 63.158 0.00 0.00 41.77 5.01
2842 3003 7.969536 TCCTAGTTTGAGACATTTCTTTCAG 57.030 36.000 0.00 0.00 29.47 3.02
2857 3018 7.715265 AATGTCGCTATGTTATCCTAGTTTG 57.285 36.000 0.00 0.00 0.00 2.93
2913 3074 4.244066 CAATTCATCATCACCCGCAAAAA 58.756 39.130 0.00 0.00 0.00 1.94
2914 3075 3.257873 ACAATTCATCATCACCCGCAAAA 59.742 39.130 0.00 0.00 0.00 2.44
2915 3076 2.824936 ACAATTCATCATCACCCGCAAA 59.175 40.909 0.00 0.00 0.00 3.68
2916 3077 2.423185 GACAATTCATCATCACCCGCAA 59.577 45.455 0.00 0.00 0.00 4.85
2917 3078 2.016318 GACAATTCATCATCACCCGCA 58.984 47.619 0.00 0.00 0.00 5.69
2918 3079 1.334869 GGACAATTCATCATCACCCGC 59.665 52.381 0.00 0.00 0.00 6.13
2919 3080 2.923121 AGGACAATTCATCATCACCCG 58.077 47.619 0.00 0.00 0.00 5.28
2920 3081 3.181483 GCAAGGACAATTCATCATCACCC 60.181 47.826 0.00 0.00 0.00 4.61
2921 3082 3.444742 TGCAAGGACAATTCATCATCACC 59.555 43.478 0.00 0.00 0.00 4.02
2922 3083 4.707030 TGCAAGGACAATTCATCATCAC 57.293 40.909 0.00 0.00 0.00 3.06
2923 3084 5.186215 ACAATGCAAGGACAATTCATCATCA 59.814 36.000 0.00 0.00 0.00 3.07
2924 3085 5.518847 CACAATGCAAGGACAATTCATCATC 59.481 40.000 0.00 0.00 0.00 2.92
2925 3086 5.186215 TCACAATGCAAGGACAATTCATCAT 59.814 36.000 0.00 0.00 0.00 2.45
2926 3087 4.523558 TCACAATGCAAGGACAATTCATCA 59.476 37.500 0.00 0.00 0.00 3.07
2927 3088 5.063180 TCACAATGCAAGGACAATTCATC 57.937 39.130 0.00 0.00 0.00 2.92
2928 3089 5.471556 TTCACAATGCAAGGACAATTCAT 57.528 34.783 0.00 0.00 0.00 2.57
2929 3090 4.933505 TTCACAATGCAAGGACAATTCA 57.066 36.364 0.00 0.00 0.00 2.57
2930 3091 5.697633 ACAATTCACAATGCAAGGACAATTC 59.302 36.000 0.00 0.00 0.00 2.17
2964 3125 6.467047 GTCAAGCAATTCACACATAGATTTCG 59.533 38.462 0.00 0.00 0.00 3.46
2970 3131 6.932356 ATAGGTCAAGCAATTCACACATAG 57.068 37.500 0.00 0.00 0.00 2.23
3060 3228 1.005867 TCGGTGCGTTGGGTTACTC 60.006 57.895 0.00 0.00 0.00 2.59
3061 3229 1.301165 GTCGGTGCGTTGGGTTACT 60.301 57.895 0.00 0.00 0.00 2.24
3062 3230 2.319841 GGTCGGTGCGTTGGGTTAC 61.320 63.158 0.00 0.00 0.00 2.50
3063 3231 2.030862 GGTCGGTGCGTTGGGTTA 59.969 61.111 0.00 0.00 0.00 2.85
3064 3232 4.941309 GGGTCGGTGCGTTGGGTT 62.941 66.667 0.00 0.00 0.00 4.11
3066 3234 4.715523 ATGGGTCGGTGCGTTGGG 62.716 66.667 0.00 0.00 0.00 4.12
3072 3242 0.655733 CGTATGAAATGGGTCGGTGC 59.344 55.000 0.00 0.00 0.00 5.01
3074 3244 1.276989 ACACGTATGAAATGGGTCGGT 59.723 47.619 0.00 0.00 0.00 4.69
3076 3246 2.343101 ACACACGTATGAAATGGGTCG 58.657 47.619 0.00 0.00 0.00 4.79
3091 3261 1.096416 TTTTGACCCAACGGACACAC 58.904 50.000 0.00 0.00 33.31 3.82
3092 3262 1.096416 GTTTTGACCCAACGGACACA 58.904 50.000 0.00 0.00 33.31 3.72
3093 3263 0.028374 CGTTTTGACCCAACGGACAC 59.972 55.000 0.00 0.00 42.68 3.67
3094 3264 2.395651 CGTTTTGACCCAACGGACA 58.604 52.632 0.00 0.00 42.68 4.02
3098 3268 0.028374 GTGTCCGTTTTGACCCAACG 59.972 55.000 0.00 0.00 45.35 4.10
3099 3269 1.096416 TGTGTCCGTTTTGACCCAAC 58.904 50.000 0.00 0.00 34.25 3.77
3100 3270 1.835494 TTGTGTCCGTTTTGACCCAA 58.165 45.000 0.00 0.00 31.53 4.12
3101 3271 1.835494 TTTGTGTCCGTTTTGACCCA 58.165 45.000 0.00 0.00 34.25 4.51
3102 3272 2.943449 TTTTGTGTCCGTTTTGACCC 57.057 45.000 0.00 0.00 34.25 4.46
3103 3273 3.484285 CGATTTTTGTGTCCGTTTTGACC 59.516 43.478 0.00 0.00 34.25 4.02
3104 3274 3.484285 CCGATTTTTGTGTCCGTTTTGAC 59.516 43.478 0.00 0.00 35.77 3.18
3569 3763 4.410400 GGTGCGGGTCCAAGGAGG 62.410 72.222 0.00 0.00 39.47 4.30
3570 3764 4.410400 GGGTGCGGGTCCAAGGAG 62.410 72.222 0.00 0.00 0.00 3.69
3593 3787 3.791586 GAGGAGCTGGCCAGGGAC 61.792 72.222 33.46 17.45 0.00 4.46
3597 3791 4.154347 GTCGGAGGAGCTGGCCAG 62.154 72.222 29.34 29.34 0.00 4.85
3599 3793 3.706373 TTGTCGGAGGAGCTGGCC 61.706 66.667 0.00 0.00 0.00 5.36
3600 3794 2.435059 GTTGTCGGAGGAGCTGGC 60.435 66.667 0.00 0.00 0.00 4.85
3601 3795 2.125912 CGTTGTCGGAGGAGCTGG 60.126 66.667 0.00 0.00 0.00 4.85
3602 3796 2.811317 GCGTTGTCGGAGGAGCTG 60.811 66.667 0.00 0.00 37.56 4.24
3603 3797 3.303135 TGCGTTGTCGGAGGAGCT 61.303 61.111 0.00 0.00 37.56 4.09
3612 3806 4.077188 GAGCGTGCCTGCGTTGTC 62.077 66.667 0.00 0.00 40.67 3.18
3618 3812 4.724602 TCAGACGAGCGTGCCTGC 62.725 66.667 0.00 0.00 0.00 4.85
3619 3813 2.807045 GTCAGACGAGCGTGCCTG 60.807 66.667 0.00 2.81 0.00 4.85
3620 3814 4.406173 CGTCAGACGAGCGTGCCT 62.406 66.667 18.63 0.00 46.05 4.75
3700 3894 4.760047 TCGAAGAAGCAGGCCCGC 62.760 66.667 1.48 1.48 0.00 6.13
3703 3897 2.095252 GTCGTCGAAGAAGCAGGCC 61.095 63.158 1.62 0.00 39.69 5.19
3722 3916 1.777199 CGTCGAACAACTTACGGGC 59.223 57.895 0.00 0.00 0.00 6.13
3727 3921 1.598601 GGCAAACCGTCGAACAACTTA 59.401 47.619 0.00 0.00 0.00 2.24
3736 3930 2.252260 CTTGCAGGCAAACCGTCG 59.748 61.111 8.20 0.00 42.76 5.12
3741 3935 2.880963 TTTGTACCTTGCAGGCAAAC 57.119 45.000 8.20 4.45 39.63 2.93
3748 3942 3.411446 CAGAGTCCATTTGTACCTTGCA 58.589 45.455 0.00 0.00 0.00 4.08
3768 3962 2.613026 TGGAAAAGAACTCGTCAGCA 57.387 45.000 0.00 0.00 0.00 4.41
3788 3983 6.912203 TCATCCGAGTCGCAAATAAAATTA 57.088 33.333 7.12 0.00 0.00 1.40
3795 3990 3.185246 AGAATCATCCGAGTCGCAAAT 57.815 42.857 7.12 0.00 41.15 2.32
3821 4016 1.114627 CCACCATCTCCTCATCGTCA 58.885 55.000 0.00 0.00 0.00 4.35
3822 4017 0.249657 GCCACCATCTCCTCATCGTC 60.250 60.000 0.00 0.00 0.00 4.20
3844 4039 1.671850 GGTCATGGACGACGAACACAT 60.672 52.381 0.00 0.00 36.73 3.21
3851 4046 0.528924 TAAGGTGGTCATGGACGACG 59.471 55.000 5.62 0.00 41.12 5.12
3934 4129 0.107459 AAGGAAATGGCCGCTCTCTC 60.107 55.000 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.