Multiple sequence alignment - TraesCS5A01G091400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G091400 chr5A 100.000 6799 0 0 1 6799 126266955 126273753 0.000000e+00 12482.0
1 TraesCS5A01G091400 chr5A 88.889 585 57 7 4245 4823 638742992 638742410 0.000000e+00 713.0
2 TraesCS5A01G091400 chr5A 96.815 314 10 0 3921 4234 484440072 484439759 6.040000e-145 525.0
3 TraesCS5A01G091400 chr5A 93.931 346 19 2 4245 4589 484442289 484441945 7.810000e-144 521.0
4 TraesCS5A01G091400 chr5A 93.548 62 4 0 190 251 445551384 445551445 7.260000e-15 93.5
5 TraesCS5A01G091400 chr1D 95.807 2051 72 8 2184 4234 112169305 112171341 0.000000e+00 3262.0
6 TraesCS5A01G091400 chr1D 94.125 1566 79 4 1852 3405 108260749 108259185 0.000000e+00 2370.0
7 TraesCS5A01G091400 chr1D 94.393 1516 78 5 1896 3407 31327299 31325787 0.000000e+00 2322.0
8 TraesCS5A01G091400 chr1D 99.390 492 3 0 3428 3919 392691602 392692093 0.000000e+00 893.0
9 TraesCS5A01G091400 chr1D 92.020 614 32 5 4271 4867 326151789 326152402 0.000000e+00 846.0
10 TraesCS5A01G091400 chr1D 90.411 657 34 4 4245 4873 108258577 108257922 0.000000e+00 837.0
11 TraesCS5A01G091400 chr1D 97.771 314 7 0 3921 4234 108370410 108370723 6.000000e-150 542.0
12 TraesCS5A01G091400 chr1D 96.825 315 9 1 3921 4234 31325351 31325037 6.040000e-145 525.0
13 TraesCS5A01G091400 chr1D 88.095 252 25 5 1 249 366248502 366248751 1.850000e-75 294.0
14 TraesCS5A01G091400 chr2A 96.292 1564 58 0 1854 3417 503465132 503463569 0.000000e+00 2567.0
15 TraesCS5A01G091400 chr2A 94.649 598 12 4 4245 4823 503463387 503462791 0.000000e+00 909.0
16 TraesCS5A01G091400 chr2A 87.243 243 28 3 8 249 70652683 70652443 2.420000e-69 274.0
17 TraesCS5A01G091400 chr2A 95.556 90 4 0 1486 1575 632952995 632952906 1.980000e-30 145.0
18 TraesCS5A01G091400 chr1A 95.717 1541 63 1 1854 3391 423920730 423919190 0.000000e+00 2477.0
19 TraesCS5A01G091400 chr1A 97.771 314 6 1 3921 4234 423918881 423918569 2.160000e-149 540.0
20 TraesCS5A01G091400 chr1A 86.079 431 50 9 4245 4668 103630103 103630530 8.040000e-124 455.0
21 TraesCS5A01G091400 chr2D 94.650 1570 74 2 1853 3412 392699957 392698388 0.000000e+00 2425.0
22 TraesCS5A01G091400 chr2D 94.257 1567 87 2 1854 3417 293681627 293680061 0.000000e+00 2392.0
23 TraesCS5A01G091400 chr2D 92.263 1564 108 2 1854 3417 186639432 186637882 0.000000e+00 2206.0
24 TraesCS5A01G091400 chr2D 98.798 499 5 1 3428 3926 106244244 106244741 0.000000e+00 887.0
25 TraesCS5A01G091400 chr2D 93.322 584 33 4 4245 4823 392698044 392697462 0.000000e+00 857.0
26 TraesCS5A01G091400 chr2D 96.497 314 11 0 3921 4234 293667871 293667558 2.810000e-143 520.0
27 TraesCS5A01G091400 chr2D 90.800 250 20 3 1 250 533090470 533090224 1.410000e-86 331.0
28 TraesCS5A01G091400 chr2D 89.960 249 23 1 1 249 491815101 491814855 3.060000e-83 320.0
29 TraesCS5A01G091400 chr2D 88.077 260 18 4 1 249 86525000 86525257 5.160000e-76 296.0
30 TraesCS5A01G091400 chr2D 88.095 252 25 5 1 249 552139356 552139605 1.850000e-75 294.0
31 TraesCS5A01G091400 chr2D 84.270 178 20 7 4879 5053 114641102 114640930 4.220000e-37 167.0
32 TraesCS5A01G091400 chr6A 94.865 1519 75 1 1853 3368 520841621 520840103 0.000000e+00 2370.0
33 TraesCS5A01G091400 chr6A 91.225 604 25 4 4248 4823 520839753 520839150 0.000000e+00 797.0
34 TraesCS5A01G091400 chr6A 91.060 604 29 3 4245 4823 100316621 100316018 0.000000e+00 793.0
35 TraesCS5A01G091400 chr6A 92.553 94 6 1 1488 1581 51882712 51882620 4.280000e-27 134.0
36 TraesCS5A01G091400 chr6A 97.101 69 2 0 4799 4867 100316016 100315948 4.310000e-22 117.0
37 TraesCS5A01G091400 chr7D 93.758 1538 93 1 1854 3388 310992898 310994435 0.000000e+00 2305.0
38 TraesCS5A01G091400 chr7D 93.044 1567 106 1 1854 3417 451194356 451195922 0.000000e+00 2287.0
39 TraesCS5A01G091400 chr7D 86.164 159 14 7 4879 5034 559103935 559104088 1.520000e-36 165.0
40 TraesCS5A01G091400 chr4D 93.243 1554 82 4 1854 3398 432424519 432422980 0.000000e+00 2266.0
41 TraesCS5A01G091400 chr4D 100.000 807 0 0 3428 4234 57482094 57481288 0.000000e+00 1491.0
42 TraesCS5A01G091400 chr4D 97.771 314 7 0 3921 4234 301751432 301751119 6.000000e-150 542.0
43 TraesCS5A01G091400 chr4D 91.379 116 10 0 4938 5053 68488275 68488160 7.060000e-35 159.0
44 TraesCS5A01G091400 chr7A 93.115 1554 90 3 1854 3404 245982103 245980564 0.000000e+00 2261.0
45 TraesCS5A01G091400 chr7A 92.453 583 38 3 4245 4823 245980267 245979687 0.000000e+00 828.0
46 TraesCS5A01G091400 chr7A 93.729 303 16 1 4568 4867 696025869 696026171 1.040000e-122 451.0
47 TraesCS5A01G091400 chr7A 93.092 304 21 0 4564 4867 195395332 195395029 4.840000e-121 446.0
48 TraesCS5A01G091400 chr5D 95.169 1242 30 8 249 1489 117263168 117264380 0.000000e+00 1934.0
49 TraesCS5A01G091400 chr5D 96.183 1048 35 2 4868 5914 117264658 117265701 0.000000e+00 1709.0
50 TraesCS5A01G091400 chr5D 89.802 961 41 18 5862 6799 117265688 117266614 0.000000e+00 1179.0
51 TraesCS5A01G091400 chr5D 98.603 501 6 1 3428 3928 324541664 324542163 0.000000e+00 885.0
52 TraesCS5A01G091400 chr5D 97.652 511 11 1 3428 3938 307784514 307784005 0.000000e+00 876.0
53 TraesCS5A01G091400 chr5D 85.794 535 56 8 4245 4759 552392094 552391560 3.580000e-152 549.0
54 TraesCS5A01G091400 chr5D 96.815 314 10 0 3921 4234 50837956 50837643 6.040000e-145 525.0
55 TraesCS5A01G091400 chr5D 97.518 282 6 1 1570 1850 117264378 117264659 1.330000e-131 481.0
56 TraesCS5A01G091400 chr5D 86.853 251 29 4 1 249 525765436 525765684 1.870000e-70 278.0
57 TraesCS5A01G091400 chr5D 86.508 252 29 4 1 250 510830617 510830865 8.690000e-69 272.0
58 TraesCS5A01G091400 chr5B 93.515 1172 45 20 4868 6035 129721506 129720362 0.000000e+00 1714.0
59 TraesCS5A01G091400 chr5B 94.495 763 33 7 6042 6799 129720383 129719625 0.000000e+00 1168.0
60 TraesCS5A01G091400 chr5B 90.920 837 61 9 692 1522 129722738 129721911 0.000000e+00 1110.0
61 TraesCS5A01G091400 chr5B 88.389 422 36 10 249 670 129723128 129722720 4.740000e-136 496.0
62 TraesCS5A01G091400 chr5B 95.833 288 11 1 1567 1853 129721789 129721502 1.340000e-126 464.0
63 TraesCS5A01G091400 chr5B 88.136 236 26 1 12 247 87238781 87239014 5.190000e-71 279.0
64 TraesCS5A01G091400 chr6D 99.390 492 3 0 3428 3919 222657714 222658205 0.000000e+00 893.0
65 TraesCS5A01G091400 chr6D 99.390 492 3 0 3428 3919 242154285 242153794 0.000000e+00 893.0
66 TraesCS5A01G091400 chr6D 92.553 94 6 1 1488 1581 41237291 41237199 4.280000e-27 134.0
67 TraesCS5A01G091400 chr3D 99.192 495 4 0 3428 3922 539806648 539807142 0.000000e+00 893.0
68 TraesCS5A01G091400 chr3D 97.852 512 10 1 3428 3939 567881901 567882411 0.000000e+00 883.0
69 TraesCS5A01G091400 chr3D 88.255 596 58 10 4281 4867 236670253 236670845 0.000000e+00 702.0
70 TraesCS5A01G091400 chr3D 97.771 314 7 0 3921 4234 647298 646985 6.000000e-150 542.0
71 TraesCS5A01G091400 chr3D 86.755 151 13 7 4886 5034 590673511 590673656 1.960000e-35 161.0
72 TraesCS5A01G091400 chr3D 94.624 93 4 1 1488 1580 567196563 567196654 7.110000e-30 143.0
73 TraesCS5A01G091400 chr3D 92.857 98 5 2 1476 1572 429097497 429097593 2.560000e-29 141.0
74 TraesCS5A01G091400 chr3D 87.500 120 10 3 1459 1577 434025906 434025791 4.280000e-27 134.0
75 TraesCS5A01G091400 chr3A 91.319 599 32 2 4245 4823 675347351 675347949 0.000000e+00 800.0
76 TraesCS5A01G091400 chr3A 87.124 598 53 15 4245 4823 143655537 143654945 0.000000e+00 656.0
77 TraesCS5A01G091400 chr3A 85.008 647 71 18 4245 4868 535187045 535187688 9.620000e-178 634.0
78 TraesCS5A01G091400 chr4A 88.926 298 29 3 4568 4865 583754117 583753824 1.390000e-96 364.0
79 TraesCS5A01G091400 chr4B 82.018 228 30 4 430 648 441086028 441085803 4.190000e-42 183.0
80 TraesCS5A01G091400 chr4B 93.684 95 6 0 1485 1579 423051083 423050989 7.110000e-30 143.0
81 TraesCS5A01G091400 chr1B 94.624 93 5 0 1483 1575 426466165 426466257 1.980000e-30 145.0
82 TraesCS5A01G091400 chr2B 89.091 110 8 4 1488 1596 483452953 483453059 4.280000e-27 134.0
83 TraesCS5A01G091400 chr6B 81.437 167 21 8 4885 5047 243241221 243241061 1.990000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G091400 chr5A 126266955 126273753 6798 False 12482.00 12482 100.0000 1 6799 1 chr5A.!!$F1 6798
1 TraesCS5A01G091400 chr5A 638742410 638742992 582 True 713.00 713 88.8890 4245 4823 1 chr5A.!!$R1 578
2 TraesCS5A01G091400 chr5A 484439759 484442289 2530 True 523.00 525 95.3730 3921 4589 2 chr5A.!!$R2 668
3 TraesCS5A01G091400 chr1D 112169305 112171341 2036 False 3262.00 3262 95.8070 2184 4234 1 chr1D.!!$F2 2050
4 TraesCS5A01G091400 chr1D 108257922 108260749 2827 True 1603.50 2370 92.2680 1852 4873 2 chr1D.!!$R2 3021
5 TraesCS5A01G091400 chr1D 31325037 31327299 2262 True 1423.50 2322 95.6090 1896 4234 2 chr1D.!!$R1 2338
6 TraesCS5A01G091400 chr1D 326151789 326152402 613 False 846.00 846 92.0200 4271 4867 1 chr1D.!!$F3 596
7 TraesCS5A01G091400 chr2A 503462791 503465132 2341 True 1738.00 2567 95.4705 1854 4823 2 chr2A.!!$R3 2969
8 TraesCS5A01G091400 chr1A 423918569 423920730 2161 True 1508.50 2477 96.7440 1854 4234 2 chr1A.!!$R1 2380
9 TraesCS5A01G091400 chr2D 293680061 293681627 1566 True 2392.00 2392 94.2570 1854 3417 1 chr2D.!!$R4 1563
10 TraesCS5A01G091400 chr2D 186637882 186639432 1550 True 2206.00 2206 92.2630 1854 3417 1 chr2D.!!$R2 1563
11 TraesCS5A01G091400 chr2D 392697462 392699957 2495 True 1641.00 2425 93.9860 1853 4823 2 chr2D.!!$R7 2970
12 TraesCS5A01G091400 chr6A 520839150 520841621 2471 True 1583.50 2370 93.0450 1853 4823 2 chr6A.!!$R3 2970
13 TraesCS5A01G091400 chr6A 100315948 100316621 673 True 455.00 793 94.0805 4245 4867 2 chr6A.!!$R2 622
14 TraesCS5A01G091400 chr7D 310992898 310994435 1537 False 2305.00 2305 93.7580 1854 3388 1 chr7D.!!$F1 1534
15 TraesCS5A01G091400 chr7D 451194356 451195922 1566 False 2287.00 2287 93.0440 1854 3417 1 chr7D.!!$F2 1563
16 TraesCS5A01G091400 chr4D 432422980 432424519 1539 True 2266.00 2266 93.2430 1854 3398 1 chr4D.!!$R4 1544
17 TraesCS5A01G091400 chr4D 57481288 57482094 806 True 1491.00 1491 100.0000 3428 4234 1 chr4D.!!$R1 806
18 TraesCS5A01G091400 chr7A 245979687 245982103 2416 True 1544.50 2261 92.7840 1854 4823 2 chr7A.!!$R2 2969
19 TraesCS5A01G091400 chr5D 117263168 117266614 3446 False 1325.75 1934 94.6680 249 6799 4 chr5D.!!$F4 6550
20 TraesCS5A01G091400 chr5D 307784005 307784514 509 True 876.00 876 97.6520 3428 3938 1 chr5D.!!$R2 510
21 TraesCS5A01G091400 chr5D 552391560 552392094 534 True 549.00 549 85.7940 4245 4759 1 chr5D.!!$R3 514
22 TraesCS5A01G091400 chr5B 129719625 129723128 3503 True 990.40 1714 92.6304 249 6799 5 chr5B.!!$R1 6550
23 TraesCS5A01G091400 chr3D 567881901 567882411 510 False 883.00 883 97.8520 3428 3939 1 chr3D.!!$F5 511
24 TraesCS5A01G091400 chr3D 236670253 236670845 592 False 702.00 702 88.2550 4281 4867 1 chr3D.!!$F1 586
25 TraesCS5A01G091400 chr3A 675347351 675347949 598 False 800.00 800 91.3190 4245 4823 1 chr3A.!!$F2 578
26 TraesCS5A01G091400 chr3A 143654945 143655537 592 True 656.00 656 87.1240 4245 4823 1 chr3A.!!$R1 578
27 TraesCS5A01G091400 chr3A 535187045 535187688 643 False 634.00 634 85.0080 4245 4868 1 chr3A.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.039527 GAACAAAAGCGCCATCCGTT 60.040 50.0 2.29 0.96 39.71 4.44 F
223 224 0.318614 ACAAAAGCGCCATCCGTTTG 60.319 50.0 2.29 8.14 39.53 2.93 F
569 570 0.458260 TAGCGCTAAACATCGGAGCA 59.542 50.0 16.33 0.00 35.91 4.26 F
2262 2431 0.179018 AAGTGCTTGCGGAACTCCTT 60.179 50.0 0.00 0.00 31.23 3.36 F
3021 3190 0.323629 CCAGTTAAGCGGGTCCTTCA 59.676 55.0 0.00 0.00 0.00 3.02 F
3792 3971 0.677842 ACTAGGGACACGTTGTGGTC 59.322 55.0 1.64 0.00 37.94 4.02 F
4593 7575 0.253020 AACAGGGGTCCTACCGGATT 60.253 55.0 9.46 0.00 42.43 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2064 0.978146 CCGTCCCACTCCATCCTTCT 60.978 60.000 0.00 0.0 0.00 2.85 R
2262 2431 2.125552 CGCTGGTTGATCGCCTCA 60.126 61.111 7.51 0.0 0.00 3.86 R
2337 2506 1.347707 CCTGGAGGTTGCAGACTACAA 59.652 52.381 6.17 0.0 38.14 2.41 R
3914 4093 0.249120 TGCCCTGGTACTCGATGTTG 59.751 55.000 0.00 0.0 0.00 3.33 R
3915 4094 0.537188 CTGCCCTGGTACTCGATGTT 59.463 55.000 0.00 0.0 0.00 2.71 R
4835 7835 0.549169 TTTAGCTAGGCCCACCAGGT 60.549 55.000 0.00 0.0 39.06 4.00 R
6203 9262 1.036707 TAAGCTTGGGGTGTTTGTGC 58.963 50.000 9.86 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.006215 GTTAATTAATGTAATGTGGACTTTCGC 57.994 33.333 0.31 0.00 0.00 4.70
33 34 5.554822 TTAATGTAATGTGGACTTTCGCC 57.445 39.130 0.00 0.00 0.00 5.54
34 35 1.434555 TGTAATGTGGACTTTCGCCG 58.565 50.000 0.00 0.00 0.00 6.46
35 36 0.725117 GTAATGTGGACTTTCGCCGG 59.275 55.000 0.00 0.00 0.00 6.13
36 37 1.022451 TAATGTGGACTTTCGCCGGC 61.022 55.000 19.07 19.07 0.00 6.13
38 39 4.699522 GTGGACTTTCGCCGGCCT 62.700 66.667 23.46 0.00 0.00 5.19
39 40 3.948719 TGGACTTTCGCCGGCCTT 61.949 61.111 23.46 0.00 0.00 4.35
40 41 3.125573 GGACTTTCGCCGGCCTTC 61.126 66.667 23.46 9.81 0.00 3.46
41 42 3.488090 GACTTTCGCCGGCCTTCG 61.488 66.667 23.46 6.82 38.88 3.79
42 43 4.309950 ACTTTCGCCGGCCTTCGT 62.310 61.111 23.46 10.70 37.11 3.85
43 44 3.788766 CTTTCGCCGGCCTTCGTG 61.789 66.667 23.46 5.48 37.11 4.35
44 45 4.302509 TTTCGCCGGCCTTCGTGA 62.303 61.111 23.46 8.31 37.11 4.35
51 52 4.778143 GGCCTTCGTGACCGGCAT 62.778 66.667 0.00 0.00 45.53 4.40
52 53 2.746277 GCCTTCGTGACCGGCATT 60.746 61.111 0.00 0.00 43.25 3.56
53 54 2.332654 GCCTTCGTGACCGGCATTT 61.333 57.895 0.00 0.00 43.25 2.32
54 55 1.022451 GCCTTCGTGACCGGCATTTA 61.022 55.000 0.00 0.00 43.25 1.40
55 56 0.725117 CCTTCGTGACCGGCATTTAC 59.275 55.000 0.00 0.00 33.95 2.01
56 57 0.368907 CTTCGTGACCGGCATTTACG 59.631 55.000 0.00 5.75 36.20 3.18
57 58 0.319727 TTCGTGACCGGCATTTACGT 60.320 50.000 0.00 0.00 36.28 3.57
58 59 0.319727 TCGTGACCGGCATTTACGTT 60.320 50.000 0.00 0.00 36.28 3.99
59 60 0.513820 CGTGACCGGCATTTACGTTT 59.486 50.000 0.00 0.00 0.00 3.60
60 61 1.725706 CGTGACCGGCATTTACGTTTA 59.274 47.619 0.00 0.00 0.00 2.01
61 62 2.157279 CGTGACCGGCATTTACGTTTAA 59.843 45.455 0.00 0.00 0.00 1.52
62 63 3.181518 CGTGACCGGCATTTACGTTTAAT 60.182 43.478 0.00 0.00 0.00 1.40
63 64 4.669708 CGTGACCGGCATTTACGTTTAATT 60.670 41.667 0.00 0.00 0.00 1.40
64 65 5.445673 CGTGACCGGCATTTACGTTTAATTA 60.446 40.000 0.00 0.00 0.00 1.40
65 66 5.734035 GTGACCGGCATTTACGTTTAATTAC 59.266 40.000 0.00 0.00 0.00 1.89
66 67 5.410746 TGACCGGCATTTACGTTTAATTACA 59.589 36.000 0.00 0.00 0.00 2.41
67 68 6.093771 TGACCGGCATTTACGTTTAATTACAT 59.906 34.615 0.00 0.00 0.00 2.29
68 69 6.259638 ACCGGCATTTACGTTTAATTACATG 58.740 36.000 0.00 0.00 0.00 3.21
69 70 5.172411 CCGGCATTTACGTTTAATTACATGC 59.828 40.000 0.00 0.00 35.98 4.06
70 71 5.739630 CGGCATTTACGTTTAATTACATGCA 59.260 36.000 0.00 0.00 38.00 3.96
71 72 6.416455 CGGCATTTACGTTTAATTACATGCAT 59.584 34.615 0.00 0.00 38.00 3.96
72 73 7.554732 GGCATTTACGTTTAATTACATGCATG 58.445 34.615 25.09 25.09 38.00 4.06
73 74 7.221838 GGCATTTACGTTTAATTACATGCATGT 59.778 33.333 33.20 33.20 44.48 3.21
74 75 8.049592 GCATTTACGTTTAATTACATGCATGTG 58.950 33.333 36.72 21.88 41.89 3.21
75 76 9.071221 CATTTACGTTTAATTACATGCATGTGT 57.929 29.630 36.72 25.69 41.89 3.72
76 77 9.632807 ATTTACGTTTAATTACATGCATGTGTT 57.367 25.926 36.72 30.31 41.89 3.32
77 78 9.464714 TTTACGTTTAATTACATGCATGTGTTT 57.535 25.926 36.72 29.34 41.89 2.83
80 81 9.632807 ACGTTTAATTACATGCATGTGTTTATT 57.367 25.926 36.72 28.32 41.89 1.40
122 123 3.998924 TTTTTGACGCGCTGACAAA 57.001 42.105 18.96 18.96 39.79 2.83
123 124 2.264109 TTTTTGACGCGCTGACAAAA 57.736 40.000 24.89 24.89 45.75 2.44
124 125 2.483583 TTTTGACGCGCTGACAAAAT 57.516 40.000 24.89 0.00 43.73 1.82
125 126 1.752753 TTTGACGCGCTGACAAAATG 58.247 45.000 19.93 0.52 38.86 2.32
126 127 0.040514 TTGACGCGCTGACAAAATGG 60.041 50.000 5.73 0.00 29.33 3.16
127 128 1.154225 GACGCGCTGACAAAATGGG 60.154 57.895 5.73 0.00 0.00 4.00
128 129 1.852067 GACGCGCTGACAAAATGGGT 61.852 55.000 5.73 0.00 0.00 4.51
129 130 1.154225 CGCGCTGACAAAATGGGTC 60.154 57.895 5.56 0.00 35.83 4.46
130 131 1.154225 GCGCTGACAAAATGGGTCG 60.154 57.895 0.00 0.00 38.10 4.79
131 132 1.501741 CGCTGACAAAATGGGTCGG 59.498 57.895 0.00 0.00 43.09 4.79
132 133 0.953471 CGCTGACAAAATGGGTCGGA 60.953 55.000 5.60 0.00 42.91 4.55
133 134 0.521735 GCTGACAAAATGGGTCGGAC 59.478 55.000 0.00 0.00 42.91 4.79
134 135 1.165270 CTGACAAAATGGGTCGGACC 58.835 55.000 19.06 19.06 42.91 4.46
135 136 0.474614 TGACAAAATGGGTCGGACCA 59.525 50.000 27.32 14.49 46.24 4.02
136 137 1.165270 GACAAAATGGGTCGGACCAG 58.835 55.000 27.32 12.17 45.20 4.00
137 138 0.893727 ACAAAATGGGTCGGACCAGC 60.894 55.000 27.32 12.47 45.20 4.85
138 139 1.674322 AAAATGGGTCGGACCAGCG 60.674 57.895 27.32 0.00 45.20 5.18
139 140 2.406002 AAAATGGGTCGGACCAGCGT 62.406 55.000 27.32 10.56 45.20 5.07
140 141 2.406002 AAATGGGTCGGACCAGCGTT 62.406 55.000 27.32 15.60 45.20 4.84
141 142 3.605749 ATGGGTCGGACCAGCGTTG 62.606 63.158 27.32 0.00 45.20 4.10
161 162 2.355363 CGCTCGTGTCGACCCAAA 60.355 61.111 14.12 0.00 0.00 3.28
162 163 2.654912 CGCTCGTGTCGACCCAAAC 61.655 63.158 14.12 3.19 0.00 2.93
163 164 1.593209 GCTCGTGTCGACCCAAACA 60.593 57.895 14.12 0.00 0.00 2.83
164 165 1.828331 GCTCGTGTCGACCCAAACAC 61.828 60.000 14.12 2.71 41.84 3.32
165 166 0.528901 CTCGTGTCGACCCAAACACA 60.529 55.000 14.12 0.00 44.75 3.72
166 167 0.528901 TCGTGTCGACCCAAACACAG 60.529 55.000 14.12 1.31 44.75 3.66
167 168 1.647084 GTGTCGACCCAAACACAGC 59.353 57.895 14.12 0.00 44.10 4.40
168 169 0.814010 GTGTCGACCCAAACACAGCT 60.814 55.000 14.12 0.00 44.10 4.24
169 170 0.531974 TGTCGACCCAAACACAGCTC 60.532 55.000 14.12 0.00 0.00 4.09
170 171 1.070786 TCGACCCAAACACAGCTCC 59.929 57.895 0.00 0.00 0.00 4.70
171 172 2.317609 CGACCCAAACACAGCTCCG 61.318 63.158 0.00 0.00 0.00 4.63
172 173 1.966451 GACCCAAACACAGCTCCGG 60.966 63.158 0.00 0.00 0.00 5.14
173 174 2.391724 GACCCAAACACAGCTCCGGA 62.392 60.000 2.93 2.93 0.00 5.14
174 175 1.966451 CCCAAACACAGCTCCGGAC 60.966 63.158 0.00 0.00 0.00 4.79
175 176 2.317609 CCAAACACAGCTCCGGACG 61.318 63.158 0.00 0.00 0.00 4.79
176 177 1.594293 CAAACACAGCTCCGGACGT 60.594 57.895 0.00 0.00 0.00 4.34
177 178 1.145377 AAACACAGCTCCGGACGTT 59.855 52.632 0.00 0.00 0.00 3.99
178 179 0.463116 AAACACAGCTCCGGACGTTT 60.463 50.000 0.00 2.72 0.00 3.60
179 180 1.157870 AACACAGCTCCGGACGTTTG 61.158 55.000 0.00 0.00 0.00 2.93
180 181 1.594293 CACAGCTCCGGACGTTTGT 60.594 57.895 0.00 0.00 0.00 2.83
181 182 1.594293 ACAGCTCCGGACGTTTGTG 60.594 57.895 0.00 0.00 0.00 3.33
182 183 1.594293 CAGCTCCGGACGTTTGTGT 60.594 57.895 0.00 0.00 0.00 3.72
183 184 1.300697 AGCTCCGGACGTTTGTGTC 60.301 57.895 0.00 0.00 38.17 3.67
189 190 3.326109 GACGTTTGTGTCCACCGG 58.674 61.111 0.00 0.00 32.61 5.28
190 191 2.203098 ACGTTTGTGTCCACCGGG 60.203 61.111 6.32 0.00 0.00 5.73
191 192 3.656045 CGTTTGTGTCCACCGGGC 61.656 66.667 6.32 0.00 0.00 6.13
192 193 3.292159 GTTTGTGTCCACCGGGCC 61.292 66.667 6.32 0.00 0.00 5.80
193 194 4.939368 TTTGTGTCCACCGGGCCG 62.939 66.667 21.46 21.46 0.00 6.13
206 207 4.089105 GGCCGACCCAAATGAACA 57.911 55.556 0.00 0.00 0.00 3.18
207 208 2.346597 GGCCGACCCAAATGAACAA 58.653 52.632 0.00 0.00 0.00 2.83
208 209 0.676736 GGCCGACCCAAATGAACAAA 59.323 50.000 0.00 0.00 0.00 2.83
209 210 1.069358 GGCCGACCCAAATGAACAAAA 59.931 47.619 0.00 0.00 0.00 2.44
210 211 2.403259 GCCGACCCAAATGAACAAAAG 58.597 47.619 0.00 0.00 0.00 2.27
211 212 2.403259 CCGACCCAAATGAACAAAAGC 58.597 47.619 0.00 0.00 0.00 3.51
212 213 2.050691 CGACCCAAATGAACAAAAGCG 58.949 47.619 0.00 0.00 0.00 4.68
213 214 1.792367 GACCCAAATGAACAAAAGCGC 59.208 47.619 0.00 0.00 0.00 5.92
214 215 1.147473 CCCAAATGAACAAAAGCGCC 58.853 50.000 2.29 0.00 0.00 6.53
215 216 1.539929 CCCAAATGAACAAAAGCGCCA 60.540 47.619 2.29 0.00 0.00 5.69
216 217 2.415776 CCAAATGAACAAAAGCGCCAT 58.584 42.857 2.29 0.00 0.00 4.40
217 218 2.412770 CCAAATGAACAAAAGCGCCATC 59.587 45.455 2.29 0.00 0.00 3.51
218 219 2.368655 AATGAACAAAAGCGCCATCC 57.631 45.000 2.29 0.00 0.00 3.51
219 220 0.171007 ATGAACAAAAGCGCCATCCG 59.829 50.000 2.29 0.00 40.75 4.18
220 221 1.169661 TGAACAAAAGCGCCATCCGT 61.170 50.000 2.29 0.00 39.71 4.69
221 222 0.039527 GAACAAAAGCGCCATCCGTT 60.040 50.000 2.29 0.96 39.71 4.44
222 223 0.387565 AACAAAAGCGCCATCCGTTT 59.612 45.000 2.29 0.00 42.34 3.60
223 224 0.318614 ACAAAAGCGCCATCCGTTTG 60.319 50.000 2.29 8.14 39.53 2.93
224 225 1.008361 CAAAAGCGCCATCCGTTTGG 61.008 55.000 2.29 0.00 39.53 3.28
225 226 2.153547 AAAAGCGCCATCCGTTTGGG 62.154 55.000 2.29 0.00 39.53 4.12
226 227 3.860930 AAGCGCCATCCGTTTGGGT 62.861 57.895 2.29 0.00 38.97 4.51
227 228 3.810896 GCGCCATCCGTTTGGGTC 61.811 66.667 0.00 0.00 39.71 4.46
228 229 3.496131 CGCCATCCGTTTGGGTCG 61.496 66.667 3.35 0.00 37.24 4.79
230 231 3.131478 CCATCCGTTTGGGTCGGC 61.131 66.667 0.00 0.00 46.49 5.54
231 232 3.131478 CATCCGTTTGGGTCGGCC 61.131 66.667 0.00 0.00 46.49 6.13
241 242 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
242 243 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
245 246 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
246 247 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
247 248 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
289 290 2.299993 TGACTAGAGCCATTTCAGCG 57.700 50.000 0.00 0.00 34.64 5.18
308 309 2.873245 GCGGTCATGCATATCAGGTCAT 60.873 50.000 0.00 0.00 34.15 3.06
313 314 5.278169 GGTCATGCATATCAGGTCATTTGTC 60.278 44.000 0.00 0.00 0.00 3.18
410 411 7.043325 CCTTGTCAATTGCTACTAGTAATCGTC 60.043 40.741 3.76 0.00 29.07 4.20
414 415 8.127327 GTCAATTGCTACTAGTAATCGTCTACA 58.873 37.037 3.76 0.00 29.07 2.74
494 495 4.749598 TGCACGTTGATATTAGGTAGCATG 59.250 41.667 0.00 0.00 0.00 4.06
498 499 7.117812 GCACGTTGATATTAGGTAGCATGTAAT 59.882 37.037 0.00 0.00 0.00 1.89
569 570 0.458260 TAGCGCTAAACATCGGAGCA 59.542 50.000 16.33 0.00 35.91 4.26
600 601 2.325583 TGGATAGATGCGGTTGAACC 57.674 50.000 3.76 3.76 34.05 3.62
621 622 2.167281 CGGTGAGATGTGTTGGATCTCT 59.833 50.000 10.31 0.00 44.28 3.10
646 647 8.263940 TGCAACTCGCTCTTTTTATATTAAGT 57.736 30.769 0.00 0.00 43.06 2.24
809 813 1.735198 CACATGCCCTTTGCTTGCG 60.735 57.895 0.00 0.00 46.26 4.85
1092 1097 5.289595 GTGTTTCTTCTTTGGAAATGGGAC 58.710 41.667 0.00 0.00 35.55 4.46
1180 1185 3.823304 GCCCTCTCAAATTATAAGCCCAG 59.177 47.826 0.00 0.00 0.00 4.45
1208 1213 7.797062 ACTAATATTCTTTCAAGGTCCTCTCC 58.203 38.462 0.00 0.00 0.00 3.71
1370 1376 0.764369 TTCTGCACCTCCACCTCTGT 60.764 55.000 0.00 0.00 0.00 3.41
1489 1654 5.123820 TGTGCTATTGCCTTTTGAGATGTAC 59.876 40.000 0.00 0.00 38.71 2.90
1490 1655 5.355350 GTGCTATTGCCTTTTGAGATGTACT 59.645 40.000 0.00 0.00 38.71 2.73
1491 1656 5.586243 TGCTATTGCCTTTTGAGATGTACTC 59.414 40.000 0.00 0.00 41.16 2.59
1492 1657 5.008118 GCTATTGCCTTTTGAGATGTACTCC 59.992 44.000 0.00 0.00 44.34 3.85
1493 1658 3.350219 TGCCTTTTGAGATGTACTCCC 57.650 47.619 0.00 0.00 44.34 4.30
1494 1659 2.912956 TGCCTTTTGAGATGTACTCCCT 59.087 45.455 0.00 0.00 44.34 4.20
1495 1660 3.055094 TGCCTTTTGAGATGTACTCCCTC 60.055 47.826 0.00 0.00 44.34 4.30
1496 1661 3.198853 GCCTTTTGAGATGTACTCCCTCT 59.801 47.826 0.00 0.00 44.34 3.69
1497 1662 4.406003 GCCTTTTGAGATGTACTCCCTCTA 59.594 45.833 0.00 0.00 44.34 2.43
1498 1663 5.071115 GCCTTTTGAGATGTACTCCCTCTAT 59.929 44.000 0.00 0.00 44.34 1.98
1499 1664 6.267928 GCCTTTTGAGATGTACTCCCTCTATA 59.732 42.308 0.00 0.00 44.34 1.31
1500 1665 7.202011 GCCTTTTGAGATGTACTCCCTCTATAA 60.202 40.741 0.00 0.00 44.34 0.98
1501 1666 8.705594 CCTTTTGAGATGTACTCCCTCTATAAA 58.294 37.037 0.00 1.55 44.34 1.40
1502 1667 9.757227 CTTTTGAGATGTACTCCCTCTATAAAG 57.243 37.037 0.00 6.39 44.34 1.85
1503 1668 9.488762 TTTTGAGATGTACTCCCTCTATAAAGA 57.511 33.333 0.00 0.00 44.34 2.52
1504 1669 9.488762 TTTGAGATGTACTCCCTCTATAAAGAA 57.511 33.333 0.00 0.00 44.34 2.52
1505 1670 9.488762 TTGAGATGTACTCCCTCTATAAAGAAA 57.511 33.333 0.00 0.00 44.34 2.52
1506 1671 9.661954 TGAGATGTACTCCCTCTATAAAGAAAT 57.338 33.333 0.00 0.00 44.34 2.17
1515 1680 9.796120 CTCCCTCTATAAAGAAATATAAGAGCG 57.204 37.037 0.00 0.00 0.00 5.03
1516 1681 9.310449 TCCCTCTATAAAGAAATATAAGAGCGT 57.690 33.333 0.00 0.00 0.00 5.07
1517 1682 9.930693 CCCTCTATAAAGAAATATAAGAGCGTT 57.069 33.333 0.00 0.00 0.00 4.84
1533 1698 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
1534 1699 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
1569 1734 9.784531 TGCTCTTATATTTCTTTATGGAAGGAG 57.215 33.333 0.00 0.00 35.98 3.69
1570 1735 9.785982 GCTCTTATATTTCTTTATGGAAGGAGT 57.214 33.333 0.00 0.00 35.98 3.85
1587 1752 8.989131 TGGAAGGAGTATTATGTTAAGCTTAGT 58.011 33.333 6.24 0.24 0.00 2.24
1820 1986 3.826157 CTGCCCAATTCTTGACAAGGTAA 59.174 43.478 15.13 3.70 0.00 2.85
1857 2023 3.450457 TCAGTTTGAATTTGCAGGTGGTT 59.550 39.130 0.00 0.00 0.00 3.67
2067 2236 9.358872 CTTATTGCTTAATTCCAAAAAGAGTCC 57.641 33.333 0.00 0.00 0.00 3.85
2262 2431 0.179018 AAGTGCTTGCGGAACTCCTT 60.179 50.000 0.00 0.00 31.23 3.36
2462 2631 3.695606 GCTGAGGTGAGCCGGTGA 61.696 66.667 1.90 0.00 40.50 4.02
2921 3090 3.957586 CAGGTCTGGGCTGCACCA 61.958 66.667 9.24 9.17 42.05 4.17
3019 3188 1.002502 GCCAGTTAAGCGGGTCCTT 60.003 57.895 0.00 0.00 34.75 3.36
3021 3190 0.323629 CCAGTTAAGCGGGTCCTTCA 59.676 55.000 0.00 0.00 0.00 3.02
3054 3223 1.276844 GCGAAATCGATCTTGGCGG 59.723 57.895 7.06 0.00 43.02 6.13
3129 3298 2.202932 GTGATGATGACGGCGCCT 60.203 61.111 26.68 11.91 0.00 5.52
3135 3304 4.457496 ATGACGGCGCCTGGTCAG 62.457 66.667 31.56 17.16 45.43 3.51
3140 3309 4.082523 GGCGCCTGGTCAGCAGTA 62.083 66.667 22.15 0.00 0.00 2.74
3744 3923 5.491982 GTCAGGAAACCATGACTATCTGTT 58.508 41.667 0.00 0.00 42.06 3.16
3745 3924 5.352569 GTCAGGAAACCATGACTATCTGTTG 59.647 44.000 0.00 0.00 42.06 3.33
3746 3925 5.248248 TCAGGAAACCATGACTATCTGTTGA 59.752 40.000 0.00 0.00 0.00 3.18
3747 3926 6.070021 TCAGGAAACCATGACTATCTGTTGAT 60.070 38.462 0.00 0.00 36.74 2.57
3748 3927 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
3749 3928 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
3750 3929 6.599244 GGAAACCATGACTATCTGTTGATCAA 59.401 38.462 3.38 3.38 34.32 2.57
3751 3930 6.992063 AACCATGACTATCTGTTGATCAAC 57.008 37.500 28.10 28.10 41.50 3.18
3752 3931 5.111989 ACCATGACTATCTGTTGATCAACG 58.888 41.667 28.55 23.04 43.94 4.10
3753 3932 5.105351 ACCATGACTATCTGTTGATCAACGA 60.105 40.000 28.55 26.46 43.94 3.85
3754 3933 5.461407 CCATGACTATCTGTTGATCAACGAG 59.539 44.000 28.55 24.84 43.94 4.18
3755 3934 4.424626 TGACTATCTGTTGATCAACGAGC 58.575 43.478 28.55 18.56 43.94 5.03
3756 3935 4.158579 TGACTATCTGTTGATCAACGAGCT 59.841 41.667 28.55 20.51 43.94 4.09
3757 3936 5.357032 TGACTATCTGTTGATCAACGAGCTA 59.643 40.000 28.55 20.52 43.94 3.32
3758 3937 5.826586 ACTATCTGTTGATCAACGAGCTAG 58.173 41.667 28.55 27.18 43.94 3.42
3759 3938 4.727507 ATCTGTTGATCAACGAGCTAGT 57.272 40.909 28.55 13.33 43.94 2.57
3760 3939 4.098055 TCTGTTGATCAACGAGCTAGTC 57.902 45.455 28.55 6.98 43.94 2.59
3761 3940 3.506067 TCTGTTGATCAACGAGCTAGTCA 59.494 43.478 28.55 10.88 43.94 3.41
3762 3941 4.022329 TCTGTTGATCAACGAGCTAGTCAA 60.022 41.667 28.55 10.18 43.94 3.18
3763 3942 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
3764 3943 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
3765 3944 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
3766 3945 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
3767 3946 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
3768 3947 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
3769 3948 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
3770 3949 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
3771 3950 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
3772 3951 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
3773 3952 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
3774 3953 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
3775 3954 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
3776 3955 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
3777 3956 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
3778 3957 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
3779 3958 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
3780 3959 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
3781 3960 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
3782 3961 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
3783 3962 3.900971 ACTAGAGGCTTACTAGGGACAC 58.099 50.000 13.13 0.00 40.86 3.67
3784 3963 1.765230 AGAGGCTTACTAGGGACACG 58.235 55.000 0.00 0.00 0.00 4.49
3785 3964 1.005687 AGAGGCTTACTAGGGACACGT 59.994 52.381 0.00 0.00 0.00 4.49
3786 3965 1.823610 GAGGCTTACTAGGGACACGTT 59.176 52.381 0.00 0.00 0.00 3.99
3787 3966 1.549170 AGGCTTACTAGGGACACGTTG 59.451 52.381 0.00 0.00 0.00 4.10
3788 3967 1.274447 GGCTTACTAGGGACACGTTGT 59.726 52.381 0.00 0.00 0.00 3.32
3789 3968 2.334838 GCTTACTAGGGACACGTTGTG 58.665 52.381 0.00 0.00 39.75 3.33
3790 3969 2.929592 GCTTACTAGGGACACGTTGTGG 60.930 54.545 1.64 0.00 37.94 4.17
3791 3970 1.999648 TACTAGGGACACGTTGTGGT 58.000 50.000 1.64 0.00 37.94 4.16
3792 3971 0.677842 ACTAGGGACACGTTGTGGTC 59.322 55.000 1.64 0.00 37.94 4.02
3793 3972 0.966920 CTAGGGACACGTTGTGGTCT 59.033 55.000 1.64 0.00 37.94 3.85
3794 3973 2.165167 CTAGGGACACGTTGTGGTCTA 58.835 52.381 1.64 0.31 37.94 2.59
3795 3974 1.640917 AGGGACACGTTGTGGTCTAT 58.359 50.000 1.64 0.00 37.94 1.98
3796 3975 1.275291 AGGGACACGTTGTGGTCTATG 59.725 52.381 1.64 0.00 37.94 2.23
3797 3976 1.001633 GGGACACGTTGTGGTCTATGT 59.998 52.381 1.64 0.00 37.94 2.29
3798 3977 2.231964 GGGACACGTTGTGGTCTATGTA 59.768 50.000 1.64 0.00 37.94 2.29
3799 3978 3.118884 GGGACACGTTGTGGTCTATGTAT 60.119 47.826 1.64 0.00 37.94 2.29
3800 3979 4.501071 GGACACGTTGTGGTCTATGTATT 58.499 43.478 1.64 0.00 37.94 1.89
3801 3980 4.565564 GGACACGTTGTGGTCTATGTATTC 59.434 45.833 1.64 0.00 37.94 1.75
3802 3981 5.142061 ACACGTTGTGGTCTATGTATTCA 57.858 39.130 1.64 0.00 37.94 2.57
3803 3982 4.927425 ACACGTTGTGGTCTATGTATTCAC 59.073 41.667 1.64 0.00 37.94 3.18
3804 3983 4.926832 CACGTTGTGGTCTATGTATTCACA 59.073 41.667 0.00 0.00 39.52 3.58
3805 3984 4.927425 ACGTTGTGGTCTATGTATTCACAC 59.073 41.667 0.00 0.00 37.96 3.82
3806 3985 4.926832 CGTTGTGGTCTATGTATTCACACA 59.073 41.667 0.00 0.00 37.96 3.72
3807 3986 5.580691 CGTTGTGGTCTATGTATTCACACAT 59.419 40.000 0.00 0.00 41.88 3.21
3808 3987 6.455513 CGTTGTGGTCTATGTATTCACACATG 60.456 42.308 0.00 0.00 39.46 3.21
3809 3988 6.048732 TGTGGTCTATGTATTCACACATGT 57.951 37.500 0.00 0.00 39.46 3.21
3810 3989 7.176589 TGTGGTCTATGTATTCACACATGTA 57.823 36.000 0.00 0.00 39.46 2.29
3811 3990 7.791029 TGTGGTCTATGTATTCACACATGTAT 58.209 34.615 0.00 0.00 39.46 2.29
3812 3991 8.264347 TGTGGTCTATGTATTCACACATGTATT 58.736 33.333 0.00 0.00 39.46 1.89
3813 3992 9.758651 GTGGTCTATGTATTCACACATGTATTA 57.241 33.333 0.00 0.00 39.46 0.98
3814 3993 9.758651 TGGTCTATGTATTCACACATGTATTAC 57.241 33.333 0.00 0.00 39.46 1.89
3815 3994 8.912658 GGTCTATGTATTCACACATGTATTACG 58.087 37.037 0.00 0.00 39.46 3.18
3816 3995 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
3821 4000 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
3822 4001 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
3823 4002 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
3824 4003 4.806775 CACACATGTATTACGATTTCCGGA 59.193 41.667 0.00 0.00 43.93 5.14
3825 4004 4.807304 ACACATGTATTACGATTTCCGGAC 59.193 41.667 1.83 0.00 43.93 4.79
3826 4005 4.806775 CACATGTATTACGATTTCCGGACA 59.193 41.667 1.83 0.00 43.93 4.02
3827 4006 5.292345 CACATGTATTACGATTTCCGGACAA 59.708 40.000 1.83 2.11 43.93 3.18
3828 4007 6.018262 CACATGTATTACGATTTCCGGACAAT 60.018 38.462 1.83 7.66 43.93 2.71
3829 4008 7.170151 CACATGTATTACGATTTCCGGACAATA 59.830 37.037 1.83 0.00 43.93 1.90
3830 4009 7.170320 ACATGTATTACGATTTCCGGACAATAC 59.830 37.037 1.83 11.52 43.93 1.89
3831 4010 6.571605 TGTATTACGATTTCCGGACAATACA 58.428 36.000 1.83 13.77 42.39 2.29
3832 4011 7.040494 TGTATTACGATTTCCGGACAATACAA 58.960 34.615 1.83 0.00 42.09 2.41
3833 4012 7.711772 TGTATTACGATTTCCGGACAATACAAT 59.288 33.333 1.83 0.00 42.09 2.71
3834 4013 6.988622 TTACGATTTCCGGACAATACAATT 57.011 33.333 1.83 0.00 43.93 2.32
3835 4014 8.665643 ATTACGATTTCCGGACAATACAATTA 57.334 30.769 1.83 0.00 43.93 1.40
3836 4015 8.665643 TTACGATTTCCGGACAATACAATTAT 57.334 30.769 1.83 0.00 43.93 1.28
3837 4016 9.761504 TTACGATTTCCGGACAATACAATTATA 57.238 29.630 1.83 0.00 43.93 0.98
3838 4017 8.306680 ACGATTTCCGGACAATACAATTATAG 57.693 34.615 1.83 0.00 43.93 1.31
3839 4018 7.095355 ACGATTTCCGGACAATACAATTATAGC 60.095 37.037 1.83 0.00 43.93 2.97
3840 4019 7.095397 CGATTTCCGGACAATACAATTATAGCA 60.095 37.037 1.83 0.00 33.91 3.49
3841 4020 8.635765 ATTTCCGGACAATACAATTATAGCAT 57.364 30.769 1.83 0.00 0.00 3.79
3842 4021 7.433708 TTCCGGACAATACAATTATAGCATG 57.566 36.000 1.83 0.00 0.00 4.06
3843 4022 6.764379 TCCGGACAATACAATTATAGCATGA 58.236 36.000 0.00 0.00 0.00 3.07
3844 4023 7.220740 TCCGGACAATACAATTATAGCATGAA 58.779 34.615 0.00 0.00 0.00 2.57
3845 4024 7.882791 TCCGGACAATACAATTATAGCATGAAT 59.117 33.333 0.00 0.00 0.00 2.57
3846 4025 9.161629 CCGGACAATACAATTATAGCATGAATA 57.838 33.333 0.00 0.00 0.00 1.75
3907 4086 8.995027 AACCATTTATTATTGTCTCTATGGCA 57.005 30.769 0.00 0.00 35.77 4.92
3908 4087 9.592196 AACCATTTATTATTGTCTCTATGGCAT 57.408 29.630 4.88 4.88 35.77 4.40
3916 4095 9.812347 ATTATTGTCTCTATGGCATATTTCCAA 57.188 29.630 7.81 9.40 37.13 3.53
3917 4096 6.942532 TTGTCTCTATGGCATATTTCCAAC 57.057 37.500 7.81 2.37 37.13 3.77
3918 4097 6.000246 TGTCTCTATGGCATATTTCCAACA 58.000 37.500 7.81 4.76 37.13 3.33
3919 4098 6.604171 TGTCTCTATGGCATATTTCCAACAT 58.396 36.000 7.81 0.00 37.13 2.71
4593 7575 0.253020 AACAGGGGTCCTACCGGATT 60.253 55.000 9.46 0.00 42.43 3.01
4623 7605 1.920351 GGTTGTAGGGGAAGGATGGAA 59.080 52.381 0.00 0.00 0.00 3.53
4714 7711 2.121832 TTCCGGCTCCTCTGGGAA 59.878 61.111 0.00 0.00 41.69 3.97
4838 7838 8.611051 AGATAACTTGTGGTCTAAGATTACCT 57.389 34.615 0.00 0.00 36.67 3.08
4868 7868 0.380733 GCTAAACCGGCCATAACAGC 59.619 55.000 0.00 1.15 0.00 4.40
4869 7869 1.745232 CTAAACCGGCCATAACAGCA 58.255 50.000 0.00 0.00 0.00 4.41
4924 7924 8.706322 AAGGATTTTTAGAGCTTTTCAGGTAA 57.294 30.769 0.00 0.00 0.00 2.85
4925 7925 8.885693 AGGATTTTTAGAGCTTTTCAGGTAAT 57.114 30.769 0.00 0.00 0.00 1.89
4926 7926 8.961634 AGGATTTTTAGAGCTTTTCAGGTAATC 58.038 33.333 0.00 0.00 0.00 1.75
5300 8300 1.407656 TTCACAGGCTCCACGTCCTT 61.408 55.000 0.00 0.00 0.00 3.36
5417 8417 2.256391 CAGCATGTGGAAGGCGAAA 58.744 52.632 0.00 0.00 0.00 3.46
5558 8558 1.134848 GGAGGCACTTGCAACAACAAA 60.135 47.619 3.15 0.00 41.55 2.83
5600 8600 4.082125 ACAGGGTGTTTCAGAATCATTCC 58.918 43.478 0.00 3.62 0.00 3.01
5613 8613 0.534873 TCATTCCGAAGATGCCGACA 59.465 50.000 0.00 0.00 0.00 4.35
5627 8627 4.742201 GACAGCGAAGGAGCGGCA 62.742 66.667 1.45 0.00 43.00 5.69
5678 8678 4.500568 GCGCTTTCACGGCTACGC 62.501 66.667 0.00 0.00 46.04 4.42
5736 8736 1.142688 ACCAGGGGTCCAAGATTGCT 61.143 55.000 0.00 0.00 0.00 3.91
5801 8801 1.448013 GTCCGCTCAACTGTAGGCC 60.448 63.158 0.00 0.00 0.00 5.19
5835 8835 0.393132 GGGCAGGCTCAGAGGTTTAC 60.393 60.000 0.00 0.00 0.00 2.01
5884 8884 6.201806 AGCTTTGCTCATCGTAAGTTATGATC 59.798 38.462 13.64 5.29 30.62 2.92
6015 9073 6.452242 TGAAACACTGTTATACGTGATCACT 58.548 36.000 22.95 12.64 35.23 3.41
6016 9074 6.364976 TGAAACACTGTTATACGTGATCACTG 59.635 38.462 22.95 17.83 35.23 3.66
6017 9075 5.386958 ACACTGTTATACGTGATCACTGT 57.613 39.130 22.95 21.93 35.23 3.55
6019 9077 5.862323 ACACTGTTATACGTGATCACTGTTC 59.138 40.000 22.95 13.01 35.23 3.18
6020 9078 5.861787 CACTGTTATACGTGATCACTGTTCA 59.138 40.000 22.95 15.77 33.04 3.18
6022 9080 6.365247 ACTGTTATACGTGATCACTGTTCAAC 59.635 38.462 22.95 22.60 0.00 3.18
6023 9081 6.217294 TGTTATACGTGATCACTGTTCAACA 58.783 36.000 22.95 24.20 0.00 3.33
6024 9082 6.702282 TGTTATACGTGATCACTGTTCAACAA 59.298 34.615 25.50 17.80 0.00 2.83
6025 9083 7.224949 TGTTATACGTGATCACTGTTCAACAAA 59.775 33.333 25.50 15.64 0.00 2.83
6026 9084 4.536364 ACGTGATCACTGTTCAACAAAG 57.464 40.909 22.95 5.92 0.00 2.77
6027 9085 4.188462 ACGTGATCACTGTTCAACAAAGA 58.812 39.130 22.95 0.00 0.00 2.52
6028 9086 4.634004 ACGTGATCACTGTTCAACAAAGAA 59.366 37.500 22.95 0.00 0.00 2.52
6029 9087 5.123186 ACGTGATCACTGTTCAACAAAGAAA 59.877 36.000 22.95 0.00 0.00 2.52
6030 9088 5.452302 CGTGATCACTGTTCAACAAAGAAAC 59.548 40.000 22.95 0.00 0.00 2.78
6031 9089 6.321717 GTGATCACTGTTCAACAAAGAAACA 58.678 36.000 18.83 0.00 0.00 2.83
6032 9090 6.806249 GTGATCACTGTTCAACAAAGAAACAA 59.194 34.615 18.83 0.00 0.00 2.83
6033 9091 7.008628 GTGATCACTGTTCAACAAAGAAACAAG 59.991 37.037 18.83 0.00 0.00 3.16
6034 9092 6.567687 TCACTGTTCAACAAAGAAACAAGA 57.432 33.333 0.00 0.00 0.00 3.02
6035 9093 7.156876 TCACTGTTCAACAAAGAAACAAGAT 57.843 32.000 0.00 0.00 0.00 2.40
6036 9094 7.028962 TCACTGTTCAACAAAGAAACAAGATG 58.971 34.615 0.00 0.00 0.00 2.90
6037 9095 7.028962 CACTGTTCAACAAAGAAACAAGATGA 58.971 34.615 0.00 0.00 0.00 2.92
6038 9096 7.219535 CACTGTTCAACAAAGAAACAAGATGAG 59.780 37.037 0.00 0.00 0.00 2.90
6039 9097 6.563422 TGTTCAACAAAGAAACAAGATGAGG 58.437 36.000 0.00 0.00 0.00 3.86
6040 9098 5.186996 TCAACAAAGAAACAAGATGAGGC 57.813 39.130 0.00 0.00 0.00 4.70
6084 9143 7.665690 AGATGAGAATACATCCAGTATGACAC 58.334 38.462 0.00 0.00 45.20 3.67
6087 9146 4.342378 AGAATACATCCAGTATGACACGCT 59.658 41.667 0.00 0.00 42.56 5.07
6100 9159 6.973474 AGTATGACACGCTTTAGATCAAGTAC 59.027 38.462 0.00 0.00 0.00 2.73
6103 9162 3.514309 ACACGCTTTAGATCAAGTACCCT 59.486 43.478 0.00 0.00 0.00 4.34
6163 9222 5.217393 GTTAAACGGGCTTACAAAAAGGAG 58.783 41.667 0.00 0.00 0.00 3.69
6203 9262 9.893305 AACTGGTAACGATCAAATTTTTAAGAG 57.107 29.630 0.00 0.00 42.51 2.85
6221 9280 0.687427 AGCACAAACACCCCAAGCTT 60.687 50.000 0.00 0.00 0.00 3.74
6231 9290 4.702831 ACACCCCAAGCTTAAAAATTGTG 58.297 39.130 0.00 3.02 0.00 3.33
6309 9368 2.039480 AGCACTGATGGTCACAGTCATT 59.961 45.455 0.00 0.00 45.15 2.57
6315 9374 6.205464 CACTGATGGTCACAGTCATTAACTTT 59.795 38.462 0.00 0.00 45.15 2.66
6420 9481 1.197721 CCAAGCATCACCACTTTCGAC 59.802 52.381 0.00 0.00 0.00 4.20
6505 9566 5.440610 GCCTTATCTTCCTTGGATTTCTCA 58.559 41.667 0.00 0.00 0.00 3.27
6592 9655 6.985188 TGATTTTCATTCTAGCAGGTACAC 57.015 37.500 0.00 0.00 0.00 2.90
6593 9656 6.472016 TGATTTTCATTCTAGCAGGTACACA 58.528 36.000 0.00 0.00 0.00 3.72
6705 9770 0.523519 CTTTTGCCGCTTTCCTCCTC 59.476 55.000 0.00 0.00 0.00 3.71
6735 9800 8.027189 GCGACCAAGGAACTAATAAAGAAAATT 58.973 33.333 0.00 0.00 38.49 1.82
6782 9847 7.446001 AAGAAAACAAACAAATGAAAAGGCA 57.554 28.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.006215 GCGAAAGTCCACATTACATTAATTAAC 57.994 33.333 0.00 0.00 0.00 2.01
7 8 8.185505 GGCGAAAGTCCACATTACATTAATTAA 58.814 33.333 0.00 0.00 0.00 1.40
8 9 7.466185 CGGCGAAAGTCCACATTACATTAATTA 60.466 37.037 0.00 0.00 0.00 1.40
9 10 6.560711 GGCGAAAGTCCACATTACATTAATT 58.439 36.000 0.00 0.00 0.00 1.40
10 11 5.220777 CGGCGAAAGTCCACATTACATTAAT 60.221 40.000 0.00 0.00 0.00 1.40
11 12 4.093703 CGGCGAAAGTCCACATTACATTAA 59.906 41.667 0.00 0.00 0.00 1.40
12 13 3.619483 CGGCGAAAGTCCACATTACATTA 59.381 43.478 0.00 0.00 0.00 1.90
13 14 2.418628 CGGCGAAAGTCCACATTACATT 59.581 45.455 0.00 0.00 0.00 2.71
14 15 2.006888 CGGCGAAAGTCCACATTACAT 58.993 47.619 0.00 0.00 0.00 2.29
15 16 1.434555 CGGCGAAAGTCCACATTACA 58.565 50.000 0.00 0.00 0.00 2.41
16 17 0.725117 CCGGCGAAAGTCCACATTAC 59.275 55.000 9.30 0.00 0.00 1.89
17 18 1.022451 GCCGGCGAAAGTCCACATTA 61.022 55.000 12.58 0.00 0.00 1.90
18 19 2.332654 GCCGGCGAAAGTCCACATT 61.333 57.895 12.58 0.00 0.00 2.71
19 20 2.746277 GCCGGCGAAAGTCCACAT 60.746 61.111 12.58 0.00 0.00 3.21
21 22 4.699522 AGGCCGGCGAAAGTCCAC 62.700 66.667 22.54 2.36 0.00 4.02
22 23 3.894547 GAAGGCCGGCGAAAGTCCA 62.895 63.158 22.54 0.00 0.00 4.02
23 24 3.125573 GAAGGCCGGCGAAAGTCC 61.126 66.667 22.54 4.09 0.00 3.85
24 25 3.488090 CGAAGGCCGGCGAAAGTC 61.488 66.667 22.54 11.59 33.91 3.01
25 26 4.309950 ACGAAGGCCGGCGAAAGT 62.310 61.111 22.54 15.26 43.93 2.66
26 27 3.788766 CACGAAGGCCGGCGAAAG 61.789 66.667 22.54 14.55 43.93 2.62
27 28 4.302509 TCACGAAGGCCGGCGAAA 62.303 61.111 22.54 10.32 43.93 3.46
36 37 0.725117 GTAAATGCCGGTCACGAAGG 59.275 55.000 1.90 0.00 44.60 3.46
37 38 0.368907 CGTAAATGCCGGTCACGAAG 59.631 55.000 1.90 0.00 44.60 3.79
38 39 0.319727 ACGTAAATGCCGGTCACGAA 60.320 50.000 17.74 0.00 44.60 3.85
39 40 0.319727 AACGTAAATGCCGGTCACGA 60.320 50.000 17.74 0.00 44.60 4.35
40 41 0.513820 AAACGTAAATGCCGGTCACG 59.486 50.000 1.90 8.52 38.52 4.35
41 42 3.809918 TTAAACGTAAATGCCGGTCAC 57.190 42.857 1.90 0.00 0.00 3.67
42 43 5.410746 TGTAATTAAACGTAAATGCCGGTCA 59.589 36.000 1.90 1.38 0.00 4.02
43 44 5.867166 TGTAATTAAACGTAAATGCCGGTC 58.133 37.500 1.90 0.00 0.00 4.79
44 45 5.876612 TGTAATTAAACGTAAATGCCGGT 57.123 34.783 1.90 0.00 0.00 5.28
45 46 5.172411 GCATGTAATTAAACGTAAATGCCGG 59.828 40.000 0.00 0.00 34.51 6.13
46 47 5.739630 TGCATGTAATTAAACGTAAATGCCG 59.260 36.000 13.00 0.00 38.67 5.69
47 48 7.221838 ACATGCATGTAATTAAACGTAAATGCC 59.778 33.333 30.50 0.00 39.68 4.40
48 49 8.049592 CACATGCATGTAATTAAACGTAAATGC 58.950 33.333 30.92 10.35 39.39 3.56
49 50 9.071221 ACACATGCATGTAATTAAACGTAAATG 57.929 29.630 30.92 15.23 39.39 2.32
50 51 9.632807 AACACATGCATGTAATTAAACGTAAAT 57.367 25.926 30.92 5.87 39.39 1.40
51 52 9.464714 AAACACATGCATGTAATTAAACGTAAA 57.535 25.926 30.92 0.00 39.39 2.01
54 55 9.632807 AATAAACACATGCATGTAATTAAACGT 57.367 25.926 30.92 18.91 39.39 3.99
104 105 2.264109 TTTTGTCAGCGCGTCAAAAA 57.736 40.000 25.36 18.11 38.91 1.94
105 106 2.115595 CATTTTGTCAGCGCGTCAAAA 58.884 42.857 27.61 27.61 43.51 2.44
106 107 1.599171 CCATTTTGTCAGCGCGTCAAA 60.599 47.619 18.17 18.17 31.94 2.69
107 108 0.040514 CCATTTTGTCAGCGCGTCAA 60.041 50.000 8.43 6.30 0.00 3.18
108 109 1.573932 CCATTTTGTCAGCGCGTCA 59.426 52.632 8.43 0.00 0.00 4.35
109 110 1.154225 CCCATTTTGTCAGCGCGTC 60.154 57.895 8.43 0.00 0.00 5.19
110 111 1.852067 GACCCATTTTGTCAGCGCGT 61.852 55.000 8.43 0.00 32.91 6.01
111 112 1.154225 GACCCATTTTGTCAGCGCG 60.154 57.895 0.00 0.00 32.91 6.86
112 113 1.154225 CGACCCATTTTGTCAGCGC 60.154 57.895 0.00 0.00 32.91 5.92
113 114 0.953471 TCCGACCCATTTTGTCAGCG 60.953 55.000 0.00 0.00 32.91 5.18
114 115 0.521735 GTCCGACCCATTTTGTCAGC 59.478 55.000 0.00 0.00 32.91 4.26
115 116 1.165270 GGTCCGACCCATTTTGTCAG 58.835 55.000 6.25 0.00 32.91 3.51
116 117 0.474614 TGGTCCGACCCATTTTGTCA 59.525 50.000 15.24 0.00 37.50 3.58
117 118 1.165270 CTGGTCCGACCCATTTTGTC 58.835 55.000 15.24 0.00 37.50 3.18
118 119 0.893727 GCTGGTCCGACCCATTTTGT 60.894 55.000 15.24 0.00 37.50 2.83
119 120 1.883021 GCTGGTCCGACCCATTTTG 59.117 57.895 15.24 0.20 37.50 2.44
120 121 1.674322 CGCTGGTCCGACCCATTTT 60.674 57.895 15.24 0.00 37.50 1.82
121 122 2.046314 CGCTGGTCCGACCCATTT 60.046 61.111 15.24 0.00 37.50 2.32
122 123 2.890766 AACGCTGGTCCGACCCATT 61.891 57.895 15.24 1.43 37.50 3.16
123 124 3.319198 AACGCTGGTCCGACCCAT 61.319 61.111 15.24 0.00 37.50 4.00
124 125 4.308458 CAACGCTGGTCCGACCCA 62.308 66.667 15.24 2.61 37.50 4.51
146 147 0.528901 TGTGTTTGGGTCGACACGAG 60.529 55.000 18.91 0.00 46.95 4.18
147 148 0.528901 CTGTGTTTGGGTCGACACGA 60.529 55.000 18.91 11.53 46.95 4.35
148 149 1.931551 CTGTGTTTGGGTCGACACG 59.068 57.895 18.91 0.00 46.95 4.49
149 150 0.814010 AGCTGTGTTTGGGTCGACAC 60.814 55.000 18.91 15.66 44.84 3.67
150 151 0.531974 GAGCTGTGTTTGGGTCGACA 60.532 55.000 18.91 0.00 0.00 4.35
151 152 1.228657 GGAGCTGTGTTTGGGTCGAC 61.229 60.000 7.13 7.13 0.00 4.20
152 153 1.070786 GGAGCTGTGTTTGGGTCGA 59.929 57.895 0.00 0.00 0.00 4.20
153 154 2.317609 CGGAGCTGTGTTTGGGTCG 61.318 63.158 0.00 0.00 0.00 4.79
154 155 1.966451 CCGGAGCTGTGTTTGGGTC 60.966 63.158 0.00 0.00 0.00 4.46
155 156 2.113139 CCGGAGCTGTGTTTGGGT 59.887 61.111 0.00 0.00 0.00 4.51
156 157 1.966451 GTCCGGAGCTGTGTTTGGG 60.966 63.158 3.06 0.00 0.00 4.12
157 158 2.317609 CGTCCGGAGCTGTGTTTGG 61.318 63.158 3.06 0.00 0.00 3.28
158 159 1.157870 AACGTCCGGAGCTGTGTTTG 61.158 55.000 3.06 0.00 0.00 2.93
159 160 0.463116 AAACGTCCGGAGCTGTGTTT 60.463 50.000 3.06 8.57 0.00 2.83
160 161 1.145377 AAACGTCCGGAGCTGTGTT 59.855 52.632 3.06 1.96 0.00 3.32
161 162 1.594293 CAAACGTCCGGAGCTGTGT 60.594 57.895 3.06 0.00 0.00 3.72
162 163 1.594293 ACAAACGTCCGGAGCTGTG 60.594 57.895 3.06 3.73 0.00 3.66
163 164 1.594293 CACAAACGTCCGGAGCTGT 60.594 57.895 3.06 2.76 0.00 4.40
164 165 1.557443 GACACAAACGTCCGGAGCTG 61.557 60.000 3.06 2.02 0.00 4.24
165 166 1.300697 GACACAAACGTCCGGAGCT 60.301 57.895 3.06 0.00 0.00 4.09
166 167 2.315386 GGACACAAACGTCCGGAGC 61.315 63.158 3.06 0.00 45.77 4.70
167 168 3.946907 GGACACAAACGTCCGGAG 58.053 61.111 3.06 1.12 45.77 4.63
172 173 2.248835 CCCGGTGGACACAAACGTC 61.249 63.158 0.00 0.00 35.03 4.34
173 174 2.203098 CCCGGTGGACACAAACGT 60.203 61.111 0.00 0.00 0.00 3.99
174 175 3.656045 GCCCGGTGGACACAAACG 61.656 66.667 0.00 0.00 0.00 3.60
175 176 3.292159 GGCCCGGTGGACACAAAC 61.292 66.667 0.00 0.00 40.65 2.93
176 177 4.939368 CGGCCCGGTGGACACAAA 62.939 66.667 0.00 0.00 41.25 2.83
189 190 0.676736 TTTGTTCATTTGGGTCGGCC 59.323 50.000 0.00 0.00 0.00 6.13
190 191 2.403259 CTTTTGTTCATTTGGGTCGGC 58.597 47.619 0.00 0.00 0.00 5.54
191 192 2.403259 GCTTTTGTTCATTTGGGTCGG 58.597 47.619 0.00 0.00 0.00 4.79
192 193 2.050691 CGCTTTTGTTCATTTGGGTCG 58.949 47.619 0.00 0.00 0.00 4.79
193 194 1.792367 GCGCTTTTGTTCATTTGGGTC 59.208 47.619 0.00 0.00 0.00 4.46
194 195 1.540146 GGCGCTTTTGTTCATTTGGGT 60.540 47.619 7.64 0.00 0.00 4.51
195 196 1.147473 GGCGCTTTTGTTCATTTGGG 58.853 50.000 7.64 0.00 0.00 4.12
196 197 1.863267 TGGCGCTTTTGTTCATTTGG 58.137 45.000 7.64 0.00 0.00 3.28
197 198 2.412770 GGATGGCGCTTTTGTTCATTTG 59.587 45.455 7.64 0.00 0.00 2.32
198 199 2.687370 GGATGGCGCTTTTGTTCATTT 58.313 42.857 7.64 0.00 0.00 2.32
199 200 1.402720 CGGATGGCGCTTTTGTTCATT 60.403 47.619 7.64 0.00 0.00 2.57
200 201 0.171007 CGGATGGCGCTTTTGTTCAT 59.829 50.000 7.64 0.00 0.00 2.57
201 202 1.169661 ACGGATGGCGCTTTTGTTCA 61.170 50.000 7.64 0.00 0.00 3.18
202 203 0.039527 AACGGATGGCGCTTTTGTTC 60.040 50.000 7.64 0.00 0.00 3.18
203 204 0.387565 AAACGGATGGCGCTTTTGTT 59.612 45.000 7.64 3.48 0.00 2.83
204 205 0.318614 CAAACGGATGGCGCTTTTGT 60.319 50.000 7.64 0.00 0.00 2.83
205 206 1.008361 CCAAACGGATGGCGCTTTTG 61.008 55.000 7.64 7.62 32.78 2.44
206 207 1.288752 CCAAACGGATGGCGCTTTT 59.711 52.632 7.64 0.00 32.78 2.27
207 208 2.635443 CCCAAACGGATGGCGCTTT 61.635 57.895 7.64 0.00 39.26 3.51
208 209 3.061848 CCCAAACGGATGGCGCTT 61.062 61.111 7.64 0.00 39.26 4.68
209 210 4.344865 ACCCAAACGGATGGCGCT 62.345 61.111 7.64 0.00 39.26 5.92
210 211 3.810896 GACCCAAACGGATGGCGC 61.811 66.667 0.00 0.00 39.26 6.53
211 212 3.496131 CGACCCAAACGGATGGCG 61.496 66.667 3.36 0.00 39.26 5.69
224 225 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
225 226 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
228 229 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
229 230 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
230 231 1.439679 GTTAGAGCAACTCCAACGGG 58.560 55.000 0.00 0.00 34.06 5.28
231 232 1.002087 AGGTTAGAGCAACTCCAACGG 59.998 52.381 0.91 0.00 34.00 4.44
232 233 2.457366 AGGTTAGAGCAACTCCAACG 57.543 50.000 0.91 0.00 34.00 4.10
233 234 2.814336 CCAAGGTTAGAGCAACTCCAAC 59.186 50.000 0.00 0.00 37.30 3.77
234 235 2.708861 TCCAAGGTTAGAGCAACTCCAA 59.291 45.455 0.00 0.00 37.30 3.53
235 236 2.334977 TCCAAGGTTAGAGCAACTCCA 58.665 47.619 0.00 0.00 37.30 3.86
236 237 3.418684 TTCCAAGGTTAGAGCAACTCC 57.581 47.619 0.00 0.00 37.30 3.85
237 238 4.379918 GCAATTCCAAGGTTAGAGCAACTC 60.380 45.833 0.00 0.00 37.30 3.01
238 239 3.507622 GCAATTCCAAGGTTAGAGCAACT 59.492 43.478 0.00 0.00 37.30 3.16
239 240 3.670627 CGCAATTCCAAGGTTAGAGCAAC 60.671 47.826 0.00 0.00 36.32 4.17
240 241 2.487762 CGCAATTCCAAGGTTAGAGCAA 59.512 45.455 0.00 0.00 0.00 3.91
241 242 2.083774 CGCAATTCCAAGGTTAGAGCA 58.916 47.619 0.00 0.00 0.00 4.26
242 243 1.401905 CCGCAATTCCAAGGTTAGAGC 59.598 52.381 0.00 0.00 0.00 4.09
243 244 2.678336 GACCGCAATTCCAAGGTTAGAG 59.322 50.000 0.00 0.00 37.07 2.43
244 245 2.304761 AGACCGCAATTCCAAGGTTAGA 59.695 45.455 0.00 0.00 37.07 2.10
245 246 2.711542 AGACCGCAATTCCAAGGTTAG 58.288 47.619 0.00 0.00 37.07 2.34
246 247 2.871096 AGACCGCAATTCCAAGGTTA 57.129 45.000 0.00 0.00 37.07 2.85
247 248 1.886542 GAAGACCGCAATTCCAAGGTT 59.113 47.619 0.00 0.00 37.07 3.50
289 290 4.581824 ACAAATGACCTGATATGCATGACC 59.418 41.667 10.16 0.00 0.00 4.02
308 309 7.994425 TTTGCTTATACTTGAGATGGACAAA 57.006 32.000 0.00 0.00 0.00 2.83
313 314 8.442632 TGAGATTTTGCTTATACTTGAGATGG 57.557 34.615 0.00 0.00 0.00 3.51
414 415 9.664332 TGCAATTAAAATTAACCTACATTGCAT 57.336 25.926 16.48 0.00 43.46 3.96
448 449 9.135189 TGCACTTAAGATCTTGCCAAATATTAT 57.865 29.630 18.47 0.00 33.86 1.28
470 471 4.116961 TGCTACCTAATATCAACGTGCAC 58.883 43.478 6.82 6.82 0.00 4.57
494 495 9.751542 AGCATACCTAATATCAGCGATAATTAC 57.248 33.333 0.00 0.00 0.00 1.89
498 499 9.131791 TGATAGCATACCTAATATCAGCGATAA 57.868 33.333 0.00 0.00 32.38 1.75
569 570 4.272504 CGCATCTATCCAACGGTTTATGTT 59.727 41.667 0.00 0.00 0.00 2.71
600 601 2.167281 AGAGATCCAACACATCTCACCG 59.833 50.000 11.33 0.00 46.14 4.94
957 962 6.585695 AGCACAGATTTCTTCAAATGACAT 57.414 33.333 0.00 0.00 31.94 3.06
1092 1097 2.834549 AGGACTGTACAGTGATCCCTTG 59.165 50.000 32.51 1.30 42.66 3.61
1180 1185 8.268605 AGAGGACCTTGAAAGAATATTAGTTCC 58.731 37.037 0.00 0.34 0.00 3.62
1208 1213 2.438434 GCCCCAAGATGACCCACG 60.438 66.667 0.00 0.00 0.00 4.94
1489 1654 9.796120 CGCTCTTATATTTCTTTATAGAGGGAG 57.204 37.037 0.00 0.00 36.40 4.30
1490 1655 9.310449 ACGCTCTTATATTTCTTTATAGAGGGA 57.690 33.333 16.73 0.00 37.30 4.20
1491 1656 9.930693 AACGCTCTTATATTTCTTTATAGAGGG 57.069 33.333 0.00 0.00 38.95 4.30
1507 1672 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
1508 1673 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1509 1674 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
1510 1675 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
1543 1708 9.784531 CTCCTTCCATAAAGAAATATAAGAGCA 57.215 33.333 0.00 0.00 37.12 4.26
1544 1709 9.785982 ACTCCTTCCATAAAGAAATATAAGAGC 57.214 33.333 0.00 0.00 37.12 4.09
1561 1726 8.989131 ACTAAGCTTAACATAATACTCCTTCCA 58.011 33.333 7.74 0.00 0.00 3.53
1562 1727 9.833917 AACTAAGCTTAACATAATACTCCTTCC 57.166 33.333 7.74 0.00 0.00 3.46
1587 1752 7.881142 TCGATGAAGCAAAATTTAGGAGAAAA 58.119 30.769 0.00 0.00 0.00 2.29
1820 1986 2.283145 ACTGAAGGAGCAGCAACATT 57.717 45.000 0.00 0.00 39.51 2.71
1857 2023 1.611261 CGGTAGGACCCCTGGTTCA 60.611 63.158 0.00 0.00 35.25 3.18
1898 2064 0.978146 CCGTCCCACTCCATCCTTCT 60.978 60.000 0.00 0.00 0.00 2.85
2262 2431 2.125552 CGCTGGTTGATCGCCTCA 60.126 61.111 7.51 0.00 0.00 3.86
2337 2506 1.347707 CCTGGAGGTTGCAGACTACAA 59.652 52.381 6.17 0.00 38.14 2.41
2384 2553 3.450115 GACGAGCCCTACACGCCT 61.450 66.667 0.00 0.00 35.59 5.52
2556 2725 2.124695 GCAGGAATCACCGTCCCC 60.125 66.667 0.00 0.00 44.74 4.81
2711 2880 1.221566 CCATGAGTCGGGCATGACA 59.778 57.895 0.00 0.00 44.49 3.58
3019 3188 0.809636 CGCCACTTATGACGGCATGA 60.810 55.000 15.86 4.29 46.60 3.07
3021 3190 0.107897 TTCGCCACTTATGACGGCAT 60.108 50.000 9.70 9.70 46.60 4.40
3129 3298 1.553690 GGCCTTCCTACTGCTGACCA 61.554 60.000 0.00 0.00 0.00 4.02
3135 3304 1.660560 TACGACGGCCTTCCTACTGC 61.661 60.000 3.22 0.00 0.00 4.40
3140 3309 3.459063 GCCTACGACGGCCTTCCT 61.459 66.667 3.22 0.00 44.41 3.36
3744 3923 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
3745 3924 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
3746 3925 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
3747 3926 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
3748 3927 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
3749 3928 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
3750 3929 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
3751 3930 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
3752 3931 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
3753 3932 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
3754 3933 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
3755 3934 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
3756 3935 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
3757 3936 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
3758 3937 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
3759 3938 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
3760 3939 4.098196 GTGTCCCTAGTAAGCCTCTAGTTG 59.902 50.000 0.00 0.00 34.72 3.16
3761 3940 4.279982 GTGTCCCTAGTAAGCCTCTAGTT 58.720 47.826 0.00 0.00 34.72 2.24
3762 3941 3.684981 CGTGTCCCTAGTAAGCCTCTAGT 60.685 52.174 0.00 0.00 34.72 2.57
3763 3942 2.879646 CGTGTCCCTAGTAAGCCTCTAG 59.120 54.545 0.00 0.00 35.86 2.43
3764 3943 2.240667 ACGTGTCCCTAGTAAGCCTCTA 59.759 50.000 0.00 0.00 0.00 2.43
3765 3944 1.005687 ACGTGTCCCTAGTAAGCCTCT 59.994 52.381 0.00 0.00 0.00 3.69
3766 3945 1.472188 ACGTGTCCCTAGTAAGCCTC 58.528 55.000 0.00 0.00 0.00 4.70
3767 3946 1.549170 CAACGTGTCCCTAGTAAGCCT 59.451 52.381 0.00 0.00 0.00 4.58
3768 3947 1.274447 ACAACGTGTCCCTAGTAAGCC 59.726 52.381 0.00 0.00 0.00 4.35
3769 3948 2.334838 CACAACGTGTCCCTAGTAAGC 58.665 52.381 0.00 0.00 0.00 3.09
3770 3949 2.298163 ACCACAACGTGTCCCTAGTAAG 59.702 50.000 0.00 0.00 0.00 2.34
3771 3950 2.297033 GACCACAACGTGTCCCTAGTAA 59.703 50.000 0.00 0.00 0.00 2.24
3772 3951 1.888512 GACCACAACGTGTCCCTAGTA 59.111 52.381 0.00 0.00 0.00 1.82
3773 3952 0.677842 GACCACAACGTGTCCCTAGT 59.322 55.000 0.00 0.00 0.00 2.57
3774 3953 0.966920 AGACCACAACGTGTCCCTAG 59.033 55.000 0.00 0.00 0.00 3.02
3775 3954 2.291209 TAGACCACAACGTGTCCCTA 57.709 50.000 0.00 0.00 0.00 3.53
3776 3955 1.275291 CATAGACCACAACGTGTCCCT 59.725 52.381 0.00 0.00 0.00 4.20
3777 3956 1.001633 ACATAGACCACAACGTGTCCC 59.998 52.381 0.00 0.00 0.00 4.46
3778 3957 2.450609 ACATAGACCACAACGTGTCC 57.549 50.000 0.00 0.00 0.00 4.02
3779 3958 5.061808 GTGAATACATAGACCACAACGTGTC 59.938 44.000 0.00 0.00 0.00 3.67
3780 3959 4.927425 GTGAATACATAGACCACAACGTGT 59.073 41.667 0.00 0.00 0.00 4.49
3781 3960 4.926832 TGTGAATACATAGACCACAACGTG 59.073 41.667 0.00 0.00 35.16 4.49
3782 3961 4.927425 GTGTGAATACATAGACCACAACGT 59.073 41.667 0.00 0.00 39.13 3.99
3783 3962 4.926832 TGTGTGAATACATAGACCACAACG 59.073 41.667 0.00 0.00 39.13 4.10
3784 3963 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
3785 3964 6.472016 ACATGTGTGAATACATAGACCACAA 58.528 36.000 0.00 0.00 39.17 3.33
3786 3965 6.048732 ACATGTGTGAATACATAGACCACA 57.951 37.500 0.00 0.00 39.17 4.17
3787 3966 8.662781 AATACATGTGTGAATACATAGACCAC 57.337 34.615 9.11 0.00 39.17 4.16
3788 3967 9.758651 GTAATACATGTGTGAATACATAGACCA 57.241 33.333 9.11 0.00 39.17 4.02
3789 3968 8.912658 CGTAATACATGTGTGAATACATAGACC 58.087 37.037 9.11 0.00 39.17 3.85
3790 3969 9.673454 TCGTAATACATGTGTGAATACATAGAC 57.327 33.333 9.11 0.00 39.17 2.59
3795 3974 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
3796 3975 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
3797 3976 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
3798 3977 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
3799 3978 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
3800 3979 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
3801 3980 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
3802 3981 4.807304 GTCCGGAAATCGTAATACATGTGT 59.193 41.667 5.23 0.00 37.11 3.72
3803 3982 4.806775 TGTCCGGAAATCGTAATACATGTG 59.193 41.667 5.23 0.00 37.11 3.21
3804 3983 5.013568 TGTCCGGAAATCGTAATACATGT 57.986 39.130 5.23 2.69 37.11 3.21
3805 3984 5.977171 TTGTCCGGAAATCGTAATACATG 57.023 39.130 5.23 0.00 37.11 3.21
3806 3985 7.211573 TGTATTGTCCGGAAATCGTAATACAT 58.788 34.615 5.23 0.00 39.85 2.29
3807 3986 6.571605 TGTATTGTCCGGAAATCGTAATACA 58.428 36.000 5.23 16.25 40.93 2.29
3808 3987 7.467557 TTGTATTGTCCGGAAATCGTAATAC 57.532 36.000 5.23 14.10 37.96 1.89
3809 3988 8.665643 AATTGTATTGTCCGGAAATCGTAATA 57.334 30.769 5.23 2.30 37.11 0.98
3810 3989 7.562454 AATTGTATTGTCCGGAAATCGTAAT 57.438 32.000 5.23 0.74 37.11 1.89
3811 3990 6.988622 AATTGTATTGTCCGGAAATCGTAA 57.011 33.333 5.23 0.00 37.11 3.18
3812 3991 9.414295 CTATAATTGTATTGTCCGGAAATCGTA 57.586 33.333 5.23 0.00 37.11 3.43
3813 3992 7.095355 GCTATAATTGTATTGTCCGGAAATCGT 60.095 37.037 5.23 0.00 37.11 3.73
3814 3993 7.095397 TGCTATAATTGTATTGTCCGGAAATCG 60.095 37.037 5.23 0.00 38.88 3.34
3815 3994 8.094798 TGCTATAATTGTATTGTCCGGAAATC 57.905 34.615 5.23 0.00 0.00 2.17
3816 3995 8.514594 CATGCTATAATTGTATTGTCCGGAAAT 58.485 33.333 5.23 11.20 0.00 2.17
3817 3996 7.717436 TCATGCTATAATTGTATTGTCCGGAAA 59.283 33.333 5.23 0.00 0.00 3.13
3818 3997 7.220740 TCATGCTATAATTGTATTGTCCGGAA 58.779 34.615 5.23 0.00 0.00 4.30
3819 3998 6.764379 TCATGCTATAATTGTATTGTCCGGA 58.236 36.000 0.00 0.00 0.00 5.14
3820 3999 7.433708 TTCATGCTATAATTGTATTGTCCGG 57.566 36.000 0.00 0.00 0.00 5.14
3882 4061 8.995027 TGCCATAGAGACAATAATAAATGGTT 57.005 30.769 0.00 0.00 35.99 3.67
3890 4069 9.812347 TTGGAAATATGCCATAGAGACAATAAT 57.188 29.630 0.00 0.00 34.90 1.28
3891 4070 9.066892 GTTGGAAATATGCCATAGAGACAATAA 57.933 33.333 0.00 0.00 34.90 1.40
3892 4071 8.217111 TGTTGGAAATATGCCATAGAGACAATA 58.783 33.333 0.00 0.00 34.90 1.90
3893 4072 7.062322 TGTTGGAAATATGCCATAGAGACAAT 58.938 34.615 0.00 0.00 34.90 2.71
3894 4073 6.422333 TGTTGGAAATATGCCATAGAGACAA 58.578 36.000 0.00 0.00 34.90 3.18
3895 4074 6.000246 TGTTGGAAATATGCCATAGAGACA 58.000 37.500 0.00 0.00 34.90 3.41
3896 4075 6.128445 CGATGTTGGAAATATGCCATAGAGAC 60.128 42.308 0.00 0.00 34.90 3.36
3897 4076 5.934043 CGATGTTGGAAATATGCCATAGAGA 59.066 40.000 0.00 0.00 34.90 3.10
3898 4077 5.934043 TCGATGTTGGAAATATGCCATAGAG 59.066 40.000 0.00 0.00 34.90 2.43
3899 4078 5.863965 TCGATGTTGGAAATATGCCATAGA 58.136 37.500 0.00 0.00 34.90 1.98
3900 4079 5.702670 ACTCGATGTTGGAAATATGCCATAG 59.297 40.000 0.00 0.00 34.90 2.23
3901 4080 5.620206 ACTCGATGTTGGAAATATGCCATA 58.380 37.500 0.00 0.00 34.90 2.74
3902 4081 4.464008 ACTCGATGTTGGAAATATGCCAT 58.536 39.130 0.00 0.00 34.90 4.40
3903 4082 3.884895 ACTCGATGTTGGAAATATGCCA 58.115 40.909 0.00 0.00 0.00 4.92
3904 4083 4.213482 GGTACTCGATGTTGGAAATATGCC 59.787 45.833 0.00 0.00 0.00 4.40
3905 4084 4.814234 TGGTACTCGATGTTGGAAATATGC 59.186 41.667 0.00 0.00 0.00 3.14
3906 4085 5.466728 CCTGGTACTCGATGTTGGAAATATG 59.533 44.000 0.00 0.00 0.00 1.78
3907 4086 5.454755 CCCTGGTACTCGATGTTGGAAATAT 60.455 44.000 0.00 0.00 0.00 1.28
3908 4087 4.141801 CCCTGGTACTCGATGTTGGAAATA 60.142 45.833 0.00 0.00 0.00 1.40
3909 4088 3.370527 CCCTGGTACTCGATGTTGGAAAT 60.371 47.826 0.00 0.00 0.00 2.17
3910 4089 2.027561 CCCTGGTACTCGATGTTGGAAA 60.028 50.000 0.00 0.00 0.00 3.13
3911 4090 1.553248 CCCTGGTACTCGATGTTGGAA 59.447 52.381 0.00 0.00 0.00 3.53
3912 4091 1.191535 CCCTGGTACTCGATGTTGGA 58.808 55.000 0.00 0.00 0.00 3.53
3913 4092 0.462047 GCCCTGGTACTCGATGTTGG 60.462 60.000 0.00 0.00 0.00 3.77
3914 4093 0.249120 TGCCCTGGTACTCGATGTTG 59.751 55.000 0.00 0.00 0.00 3.33
3915 4094 0.537188 CTGCCCTGGTACTCGATGTT 59.463 55.000 0.00 0.00 0.00 2.71
3916 4095 1.330655 CCTGCCCTGGTACTCGATGT 61.331 60.000 0.00 0.00 0.00 3.06
3917 4096 1.330655 ACCTGCCCTGGTACTCGATG 61.331 60.000 0.00 0.00 38.79 3.84
3918 4097 1.001760 ACCTGCCCTGGTACTCGAT 59.998 57.895 0.00 0.00 38.79 3.59
3919 4098 1.982395 CACCTGCCCTGGTACTCGA 60.982 63.158 0.00 0.00 38.45 4.04
4004 4216 1.063649 GCCGATCTAGAACGCGTCA 59.936 57.895 14.44 0.00 0.00 4.35
4015 4227 4.498520 CGACGCACTGGCCGATCT 62.499 66.667 0.00 0.00 36.38 2.75
4346 4561 0.911769 CATCTCCCTGTACTTGGCCA 59.088 55.000 0.00 0.00 0.00 5.36
4593 7575 1.550130 CCCTACAACCTCCGGAGCAA 61.550 60.000 26.87 7.54 0.00 3.91
4623 7605 2.849162 ATCATCGCCCCGTCCCAT 60.849 61.111 0.00 0.00 0.00 4.00
4714 7711 8.993424 AGAATATTATTATCTCTATTGCCCGGT 58.007 33.333 0.00 0.00 0.00 5.28
4826 7826 2.124411 GGCCCACCAGGTAATCTTAGA 58.876 52.381 0.00 0.00 38.26 2.10
4835 7835 0.549169 TTTAGCTAGGCCCACCAGGT 60.549 55.000 0.00 0.00 39.06 4.00
4838 7838 1.906105 CGGTTTAGCTAGGCCCACCA 61.906 60.000 0.00 0.00 39.06 4.17
4883 7883 5.485662 AATCCTTAGCGAAACAATGTAGC 57.514 39.130 0.00 0.00 0.00 3.58
5300 8300 0.605319 GATGCCCGGTGTTCAGAACA 60.605 55.000 12.24 12.24 39.52 3.18
5495 8495 2.592102 AATGCCTTGGTGACAGTGAT 57.408 45.000 0.00 0.00 44.54 3.06
5600 8600 1.746727 CTTCGCTGTCGGCATCTTCG 61.747 60.000 4.16 0.00 41.91 3.79
5613 8613 2.281484 TTTTGCCGCTCCTTCGCT 60.281 55.556 0.00 0.00 0.00 4.93
5618 8618 2.124507 TAGTGCCTTTTGCCGCTCCT 62.125 55.000 0.00 0.00 40.16 3.69
5626 8626 3.350833 AGCTTGATCCTAGTGCCTTTTG 58.649 45.455 0.00 0.00 0.00 2.44
5627 8627 3.265479 AGAGCTTGATCCTAGTGCCTTTT 59.735 43.478 0.00 0.00 0.00 2.27
5678 8678 1.934589 TTGATATGTGCCCTTCGTCG 58.065 50.000 0.00 0.00 0.00 5.12
5784 8784 2.656069 GGGCCTACAGTTGAGCGGA 61.656 63.158 0.84 0.00 0.00 5.54
5801 8801 2.360852 CCCTGACAGCAGCCAAGG 60.361 66.667 0.00 0.00 40.91 3.61
5835 8835 5.601662 TCTAAAGACGGGCTAAGATGAATG 58.398 41.667 0.00 0.00 0.00 2.67
6015 9073 6.563422 CCTCATCTTGTTTCTTTGTTGAACA 58.437 36.000 0.00 0.00 0.00 3.18
6016 9074 5.460091 GCCTCATCTTGTTTCTTTGTTGAAC 59.540 40.000 0.00 0.00 0.00 3.18
6017 9075 5.591099 GCCTCATCTTGTTTCTTTGTTGAA 58.409 37.500 0.00 0.00 0.00 2.69
6019 9077 3.976942 CGCCTCATCTTGTTTCTTTGTTG 59.023 43.478 0.00 0.00 0.00 3.33
6020 9078 3.632145 ACGCCTCATCTTGTTTCTTTGTT 59.368 39.130 0.00 0.00 0.00 2.83
6022 9080 3.003689 ACACGCCTCATCTTGTTTCTTTG 59.996 43.478 0.00 0.00 0.00 2.77
6023 9081 3.214328 ACACGCCTCATCTTGTTTCTTT 58.786 40.909 0.00 0.00 0.00 2.52
6024 9082 2.851195 ACACGCCTCATCTTGTTTCTT 58.149 42.857 0.00 0.00 0.00 2.52
6025 9083 2.550830 ACACGCCTCATCTTGTTTCT 57.449 45.000 0.00 0.00 0.00 2.52
6026 9084 2.548057 TGAACACGCCTCATCTTGTTTC 59.452 45.455 0.00 0.00 32.34 2.78
6027 9085 2.571212 TGAACACGCCTCATCTTGTTT 58.429 42.857 0.00 0.00 32.34 2.83
6028 9086 2.254546 TGAACACGCCTCATCTTGTT 57.745 45.000 0.00 0.00 34.88 2.83
6029 9087 1.873591 GTTGAACACGCCTCATCTTGT 59.126 47.619 0.00 0.00 0.00 3.16
6030 9088 1.872952 TGTTGAACACGCCTCATCTTG 59.127 47.619 0.00 0.00 0.00 3.02
6031 9089 2.254546 TGTTGAACACGCCTCATCTT 57.745 45.000 0.00 0.00 0.00 2.40
6032 9090 2.254546 TTGTTGAACACGCCTCATCT 57.745 45.000 0.00 0.00 0.00 2.90
6033 9091 2.548057 TCTTTGTTGAACACGCCTCATC 59.452 45.455 0.00 0.00 0.00 2.92
6034 9092 2.571212 TCTTTGTTGAACACGCCTCAT 58.429 42.857 0.00 0.00 0.00 2.90
6035 9093 2.031258 TCTTTGTTGAACACGCCTCA 57.969 45.000 0.00 0.00 0.00 3.86
6036 9094 3.105937 GTTTCTTTGTTGAACACGCCTC 58.894 45.455 0.00 0.00 0.00 4.70
6037 9095 2.490115 TGTTTCTTTGTTGAACACGCCT 59.510 40.909 0.00 0.00 0.00 5.52
6038 9096 2.869897 TGTTTCTTTGTTGAACACGCC 58.130 42.857 0.00 0.00 0.00 5.68
6039 9097 4.162812 TCTTGTTTCTTTGTTGAACACGC 58.837 39.130 0.00 0.00 0.00 5.34
6040 9098 6.027131 TCATCTTGTTTCTTTGTTGAACACG 58.973 36.000 0.00 0.00 0.00 4.49
6100 9159 6.790232 TTTATAGAATTTTCCTGGCAAGGG 57.210 37.500 7.48 0.00 44.62 3.95
6103 9162 8.601546 ACCAATTTTATAGAATTTTCCTGGCAA 58.398 29.630 0.00 0.00 0.00 4.52
6163 9222 5.333568 CGTTACCAGTTTGTACTTTGTAGCC 60.334 44.000 0.00 0.00 30.26 3.93
6203 9262 1.036707 TAAGCTTGGGGTGTTTGTGC 58.963 50.000 9.86 0.00 0.00 4.57
6231 9290 4.890581 AGGTCACATGTATCACTAGGTCTC 59.109 45.833 0.00 0.00 0.00 3.36
6420 9481 5.375417 TGCCAGTTATGATTGACAACTTG 57.625 39.130 0.00 0.00 30.20 3.16
6572 9635 6.058833 TGTTGTGTACCTGCTAGAATGAAAA 58.941 36.000 0.00 0.00 0.00 2.29
6593 9656 4.689612 ACTCACACAACAGTAGGATGTT 57.310 40.909 0.00 0.00 44.12 2.71
6705 9770 0.245539 TTAGTTCCTTGGTCGCGAGG 59.754 55.000 10.24 7.57 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.