AutoCloner

Multiple sequence alignment - TraesCS5A01G091300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G091300	chr5A	100.000	3403	0	0	1	3403	126102244	126098842	0.000000e+00	6285.0
1	TraesCS5A01G091300	chr5D	95.719	1635	51	13	705	2334	117244267	117242647	0.000000e+00	2614.0
2	TraesCS5A01G091300	chr5D	87.132	544	45	9	10	535	117258887	117258351	8.130000e-166	593.0
3	TraesCS5A01G091300	chr5D	91.515	165	10	3	521	685	117244534	117244374	1.230000e-54	224.0
4	TraesCS5A01G091300	chr5B	91.640	1842	95	15	705	2490	129858962	129860800	0.000000e+00	2494.0
5	TraesCS5A01G091300	chr5B	84.918	610	54	15	1	573	129857889	129858497	1.760000e-162	582.0
6	TraesCS5A01G091300	chr5B	91.367	139	9	3	567	705	129858754	129858889	1.610000e-43	187.0
7	TraesCS5A01G091300	chr7D	91.594	690	50	5	2489	3172	109516453	109517140	0.000000e+00	946.0
8	TraesCS5A01G091300	chr7D	84.787	894	123	7	2495	3380	104918245	104919133	0.000000e+00	885.0
9	TraesCS5A01G091300	chr2D	85.809	902	114	11	2489	3380	388477809	388478706	0.000000e+00	944.0
10	TraesCS5A01G091300	chr2D	83.885	906	132	12	2485	3380	98709928	98710829	0.000000e+00	852.0
11	TraesCS5A01G091300	chr1A	90.661	696	60	2	2704	3398	515953837	515954528	0.000000e+00	920.0
12	TraesCS5A01G091300	chr4D	85.421	878	116	10	2512	3379	203645336	203646211	0.000000e+00	902.0
13	TraesCS5A01G091300	chr4D	86.420	81	9	2	1	80	226547709	226547788	1.680000e-13	87.9
14	TraesCS5A01G091300	chr3B	84.729	884	121	10	2489	3364	584976347	584975470	0.000000e+00	872.0
15	TraesCS5A01G091300	chr3B	86.968	376	39	7	2497	2864	601376043	601375670	6.790000e-112	414.0
16	TraesCS5A01G091300	chr3B	77.007	548	106	17	1277	1816	720219205	720218670	2.570000e-76	296.0
17	TraesCS5A01G091300	chr7B	83.978	905	129	11	2489	3382	104219624	104218725	0.000000e+00	854.0
18	TraesCS5A01G091300	chr2B	83.407	904	134	13	2489	3380	150340371	150341270	0.000000e+00	824.0
19	TraesCS5A01G091300	chr4B	76.981	1060	193	44	1275	2296	66472746	66471700	2.970000e-155	558.0
20	TraesCS5A01G091300	chr3D	76.354	554	111	15	1277	1816	544361064	544360517	2.590000e-71	279.0
21	TraesCS5A01G091300	chr3A	76.087	552	108	20	1277	1816	681343623	681343084	2.010000e-67	267.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G091300	chr5A	126098842	126102244	3402	True	6285.000000	6285	100.000000	1	3403	1	chr5A.!!$R1	3402
1	TraesCS5A01G091300	chr5D	117242647	117244534	1887	True	1419.000000	2614	93.617000	521	2334	2	chr5D.!!$R2	1813
2	TraesCS5A01G091300	chr5D	117258351	117258887	536	True	593.000000	593	87.132000	10	535	1	chr5D.!!$R1	525
3	TraesCS5A01G091300	chr5B	129857889	129860800	2911	False	1087.666667	2494	89.308333	1	2490	3	chr5B.!!$F1	2489
4	TraesCS5A01G091300	chr7D	109516453	109517140	687	False	946.000000	946	91.594000	2489	3172	1	chr7D.!!$F2	683
5	TraesCS5A01G091300	chr7D	104918245	104919133	888	False	885.000000	885	84.787000	2495	3380	1	chr7D.!!$F1	885
6	TraesCS5A01G091300	chr2D	388477809	388478706	897	False	944.000000	944	85.809000	2489	3380	1	chr2D.!!$F2	891
7	TraesCS5A01G091300	chr2D	98709928	98710829	901	False	852.000000	852	83.885000	2485	3380	1	chr2D.!!$F1	895
8	TraesCS5A01G091300	chr1A	515953837	515954528	691	False	920.000000	920	90.661000	2704	3398	1	chr1A.!!$F1	694
9	TraesCS5A01G091300	chr4D	203645336	203646211	875	False	902.000000	902	85.421000	2512	3379	1	chr4D.!!$F1	867
10	TraesCS5A01G091300	chr3B	584975470	584976347	877	True	872.000000	872	84.729000	2489	3364	1	chr3B.!!$R1	875
11	TraesCS5A01G091300	chr3B	720218670	720219205	535	True	296.000000	296	77.007000	1277	1816	1	chr3B.!!$R3	539
12	TraesCS5A01G091300	chr7B	104218725	104219624	899	True	854.000000	854	83.978000	2489	3382	1	chr7B.!!$R1	893
13	TraesCS5A01G091300	chr2B	150340371	150341270	899	False	824.000000	824	83.407000	2489	3380	1	chr2B.!!$F1	891
14	TraesCS5A01G091300	chr4B	66471700	66472746	1046	True	558.000000	558	76.981000	1275	2296	1	chr4B.!!$R1	1021
15	TraesCS5A01G091300	chr3D	544360517	544361064	547	True	279.000000	279	76.354000	1277	1816	1	chr3D.!!$R1	539
16	TraesCS5A01G091300	chr3A	681343084	681343623	539	True	267.000000	267	76.087000	1277	1816	1	chr3A.!!$R1	539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
36	37	0.889994	ATGTTCAATGGCACGTGCAT	59.110	45.0	38.60	26.63	44.36	3.96	F
1032	1459	0.035343	ATGGAGTCGAGTCACCGAGA	60.035	55.0	21.38	0.00	39.43	4.04	F
1397	1827	0.108138	CCTCAAGTACGGCTTCCCAG	60.108	60.0	0.00	0.00	34.69	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1517	1973	0.035056	CCCTTGTTGGCCTCCTGTAG	60.035	60.0	3.32	0.00	2.74	R
2371	2850	0.459078	TCGCTGAGAAGGCTGAGATG	59.541	55.0	0.00	0.00	2.90	R
3107	3619	0.729816	GCTGTCTTCTCGGTGTCGTC	60.730	60.0	0.00	37.69	4.20	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	0.889994	ATGTTCAATGGCACGTGCAT	59.110	45.000	38.60	26.63	44.36	3.96
44	45	2.037136	GGCACGTGCATGAGCTCTT	61.037	57.895	38.60	5.66	44.36	2.85
76	77	2.054799	ACTTAGTGCTTGGGGAGTTGA	58.945	47.619	0.00	0.00	0.00	3.18
186	194	6.262944	ACAGTTCATGTTGCTTTCAATCTACA	59.737	34.615	0.00	0.00	39.96	2.74
216	224	8.822805	ACCTAGGAGTAGTTTGAATATGTTTGA	58.177	33.333	17.98	0.00	0.00	2.69
226	234	9.131791	AGTTTGAATATGTTTGACCACTAGTTT	57.868	29.630	0.00	0.00	0.00	2.66
254	262	6.014755	GGGTATTCGTCCTAATAGTAAGGCTT	60.015	42.308	4.58	4.58	33.84	4.35
285	293	2.964209	TGGGGTTTGCAATTTACTCCA	58.036	42.857	15.92	15.92	40.06	3.86
309	317	7.385752	CCAGGCTATATAAAATTGTTGCAATGG	59.614	37.037	0.59	0.00	0.00	3.16
331	339	9.691362	AATGGTTGTGTGTTTAATGTATCTTTC	57.309	29.630	0.00	0.00	0.00	2.62
340	348	7.320324	GTGTTTAATGTATCTTTCGTGTGTGTG	59.680	37.037	0.00	0.00	0.00	3.82
342	350	4.990543	ATGTATCTTTCGTGTGTGTGTG	57.009	40.909	0.00	0.00	0.00	3.82
343	351	3.787785	TGTATCTTTCGTGTGTGTGTGT	58.212	40.909	0.00	0.00	0.00	3.72
344	352	4.185394	TGTATCTTTCGTGTGTGTGTGTT	58.815	39.130	0.00	0.00	0.00	3.32
345	353	4.632251	TGTATCTTTCGTGTGTGTGTGTTT	59.368	37.500	0.00	0.00	0.00	2.83
395	436	3.646162	AGGCTATCAATTGGATCCACGTA	59.354	43.478	15.91	0.00	37.44	3.57
415	457	6.934645	CACGTATGGTCATTATTTGGTAGGAT	59.065	38.462	0.00	0.00	0.00	3.24
434	476	1.143183	GAGAGCCGGCCGTTTATGA	59.857	57.895	26.15	0.00	0.00	2.15
460	502	1.139058	GAGTGCAACCGATGGGATACT	59.861	52.381	0.00	0.00	37.80	2.12
491	536	6.113411	GCTATATTAAGGCGATATGGGTTGT	58.887	40.000	0.00	0.00	0.00	3.32
502	547	4.443739	CGATATGGGTTGTGGCCTAGTAAA	60.444	45.833	3.32	0.00	0.00	2.01
503	548	5.631119	GATATGGGTTGTGGCCTAGTAAAT	58.369	41.667	3.32	0.00	0.00	1.40
674	1008	2.778299	TGCAGAAACCGGGATATATGC	58.222	47.619	6.32	8.53	0.00	3.14
691	1025	8.277918	GGATATATGCTATCCCTCTTTTGGAAT	58.722	37.037	0.00	0.00	37.98	3.01
696	1030	4.582240	GCTATCCCTCTTTTGGAATCAAGG	59.418	45.833	0.00	0.00	35.03	3.61
947	1374	2.224161	CGGAAGGGATTCTCCTGCTAAG	60.224	54.545	0.00	0.00	37.20	2.18
999	1426	2.598394	GCTTCACTTGGGCAGGCA	60.598	61.111	0.00	0.00	0.00	4.75
1019	1446	4.385310	GGCACTATAAAAGGGACATGGAGT	60.385	45.833	0.00	0.00	36.20	3.85
1028	1455	3.723554	GACATGGAGTCGAGTCACC	57.276	57.895	21.38	6.81	37.53	4.02
1032	1459	0.035343	ATGGAGTCGAGTCACCGAGA	60.035	55.000	21.38	0.00	39.43	4.04
1045	1472	3.123620	CGAGACAGGCAAGGCAGC	61.124	66.667	0.00	0.00	0.00	5.25
1243	1670	1.209127	GTTCACGAACATTGGCCGG	59.791	57.895	0.00	0.00	40.84	6.13
1397	1827	0.108138	CCTCAAGTACGGCTTCCCAG	60.108	60.000	0.00	0.00	34.69	4.45
1426	1856	3.433173	GCATCCTTGTCCTTACCGGTAAT	60.433	47.826	26.70	6.50	0.00	1.89
1459	1906	4.072131	GCATCCACCAAGTTTTCTCTGTA	58.928	43.478	0.00	0.00	0.00	2.74
1517	1973	2.586357	GATGAAGAGCGCGACCCC	60.586	66.667	12.10	0.00	0.00	4.95
1629	2085	2.359169	GGCCACGGTGATCAGGAGA	61.359	63.158	10.28	0.00	0.00	3.71
1838	2303	4.326826	TCTGCCAGATCAAAAAGTACCAG	58.673	43.478	0.00	0.00	0.00	4.00
1841	2306	3.821033	GCCAGATCAAAAAGTACCAGTGT	59.179	43.478	0.00	0.00	0.00	3.55
1853	2318	9.452287	AAAAAGTACCAGTGTTACTACTTTCAA	57.548	29.630	0.19	0.00	34.95	2.69
1860	2325	8.932791	ACCAGTGTTACTACTTTCAATAAATCG	58.067	33.333	0.00	0.00	0.00	3.34
2078	2553	0.596577	TGACGTACAGCTTCTTCGCT	59.403	50.000	0.00	0.00	41.90	4.93
2132	2607	0.386478	GCCAGCTGCTTCAAAAGACG	60.386	55.000	8.66	0.00	36.87	4.18
2186	2661	2.039624	ATCCACTGCGACCTCCCT	59.960	61.111	0.00	0.00	0.00	4.20
2255	2730	1.622811	CAGGAGCCTCAACTGTCTTCT	59.377	52.381	0.00	0.00	0.00	2.85
2315	2790	7.463544	TGCTATAAAATCAACAAGATGTGTCG	58.536	34.615	0.00	0.00	40.60	4.35
2318	2793	1.078709	ATCAACAAGATGTGTCGGCG	58.921	50.000	0.00	0.00	40.60	6.46
2346	2825	2.551459	GCTGCCATCTAAATGCTACAGG	59.449	50.000	0.00	0.00	32.10	4.00
2347	2826	3.745480	GCTGCCATCTAAATGCTACAGGA	60.745	47.826	0.00	0.00	32.10	3.86
2371	2850	2.222819	CGCAAGCTCGTTGAGTAATTCC	60.223	50.000	0.00	0.00	38.60	3.01
2372	2851	2.742053	GCAAGCTCGTTGAGTAATTCCA	59.258	45.455	0.00	0.00	38.60	3.53
2390	2869	0.459078	CATCTCAGCCTTCTCAGCGA	59.541	55.000	0.00	0.00	34.64	4.93
2422	2915	5.119125	GGTAAATAAAACTAGTGCGTCGTGT	59.881	40.000	0.00	0.00	0.00	4.49
2429	2922	1.669265	CTAGTGCGTCGTGTCATAGGA	59.331	52.381	0.00	0.00	0.00	2.94
2439	2932	2.539142	CGTGTCATAGGACTAGTCGCAC	60.539	54.545	16.56	14.91	44.61	5.34
2547	3040	0.921896	ATTACACCCAGCCTCTGCAT	59.078	50.000	0.00	0.00	41.13	3.96
2551	3044	1.922369	ACCCAGCCTCTGCATCAGT	60.922	57.895	0.00	0.00	41.13	3.41
2554	3047	1.065199	CCCAGCCTCTGCATCAGTAAA	60.065	52.381	0.00	0.00	41.13	2.01
2576	3069	7.921786	AAAACATCGAAAGACATCAAGGATA	57.078	32.000	0.00	0.00	46.97	2.59
2581	3074	5.977635	TCGAAAGACATCAAGGATACACAT	58.022	37.500	0.00	0.00	34.18	3.21
2665	3168	8.514330	TGAAAAACTAACAACACTCTAACCAT	57.486	30.769	0.00	0.00	0.00	3.55
2785	3290	6.715264	GGATCTTGAGTTTTTACCCTGAAGAA	59.285	38.462	0.00	0.00	35.16	2.52
2845	3353	2.107378	TGCCAGGTACAACCAATGAAGA	59.893	45.455	0.00	0.00	41.95	2.87
2851	3359	4.289672	AGGTACAACCAATGAAGACCAGAT	59.710	41.667	0.00	0.00	41.95	2.90
2937	3446	0.835971	TGTGTTGCTGCCCTCTCCTA	60.836	55.000	0.00	0.00	0.00	2.94
2953	3462	4.408821	TACCAAGGCCGCTGCTGG	62.409	66.667	6.82	6.82	38.46	4.85
3074	3586	3.885297	CCATGACTTTCTTCACCACTGTT	59.115	43.478	0.00	0.00	0.00	3.16
3107	3619	6.141462	GGAAATCTATACTTAGACGTGTCCG	58.859	44.000	0.00	0.00	37.28	4.79
3216	3730	7.179160	TCAATTCCGATATAGATGTCCAGTGAT	59.821	37.037	0.00	0.00	0.00	3.06
3221	3735	5.567423	CGATATAGATGTCCAGTGATGCCAA	60.567	44.000	0.00	0.00	0.00	4.52
3255	3769	2.472029	GGATCTCCAAGAGGAAGACCA	58.528	52.381	0.00	0.00	45.19	4.02
3383	3898	1.524002	CGGATCTGGGCAGTGTCAT	59.476	57.895	0.00	0.00	0.00	3.06
3399	3914	2.479566	TCATGCCTGACAAACTCCTC	57.520	50.000	0.00	0.00	0.00	3.71
3400	3915	1.003580	TCATGCCTGACAAACTCCTCC	59.996	52.381	0.00	0.00	0.00	4.30
3401	3916	0.036010	ATGCCTGACAAACTCCTCCG	60.036	55.000	0.00	0.00	0.00	4.63
3402	3917	1.118965	TGCCTGACAAACTCCTCCGA	61.119	55.000	0.00	0.00	0.00	4.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	0.532573	GGACCGATGACAAGAGCTCA	59.467	55.000	17.77	0.00	0.00	4.26
44	45	1.067142	GCACTAAGTGGACCGATGACA	60.067	52.381	0.00	0.00	33.64	3.58
76	77	2.775418	TCATCCCCATGGACACTACAT	58.225	47.619	15.22	0.00	45.58	2.29
186	194	7.182206	ACATATTCAAACTACTCCTAGGTGGTT	59.818	37.037	15.12	5.62	41.43	3.67
216	224	3.836562	ACGAATACCCTCAAACTAGTGGT	59.163	43.478	7.00	7.00	0.00	4.16
226	234	6.718454	CCTTACTATTAGGACGAATACCCTCA	59.282	42.308	0.00	0.00	34.56	3.86
254	262	1.700186	GCAAACCCCAACCCCAATTTA	59.300	47.619	0.00	0.00	0.00	1.40
285	293	8.021898	ACCATTGCAACAATTTTATATAGCCT	57.978	30.769	0.00	0.00	0.00	4.58
309	317	7.853929	ACACGAAAGATACATTAAACACACAAC	59.146	33.333	0.00	0.00	0.00	3.32
331	339	1.260561	GGAGCTAAACACACACACACG	59.739	52.381	0.00	0.00	0.00	4.49
340	348	4.808364	TGCAAATTGTTTGGAGCTAAACAC	59.192	37.500	13.17	4.16	46.73	3.32
342	350	5.120674	GGATGCAAATTGTTTGGAGCTAAAC	59.879	40.000	10.97	5.33	45.07	2.01
343	351	5.011943	AGGATGCAAATTGTTTGGAGCTAAA	59.988	36.000	10.97	0.00	45.07	1.85
344	352	4.527816	AGGATGCAAATTGTTTGGAGCTAA	59.472	37.500	10.97	0.00	45.07	3.09
345	353	4.088634	AGGATGCAAATTGTTTGGAGCTA	58.911	39.130	10.97	0.00	45.07	3.32
395	436	7.392766	TCTCATCCTACCAAATAATGACCAT	57.607	36.000	0.00	0.00	0.00	3.55
415	457	1.153449	CATAAACGGCCGGCTCTCA	60.153	57.895	31.76	8.63	0.00	3.27
434	476	1.134580	CCATCGGTTGCACTCAGAGAT	60.135	52.381	3.79	0.00	0.00	2.75
460	502	1.274167	CGCCTTAATATAGCCCGGACA	59.726	52.381	0.73	0.00	0.00	4.02
470	515	5.253330	CCACAACCCATATCGCCTTAATAT	58.747	41.667	0.00	0.00	0.00	1.28
475	520	0.751643	GCCACAACCCATATCGCCTT	60.752	55.000	0.00	0.00	0.00	4.35
491	536	3.074687	TCACAAACCCATTTACTAGGCCA	59.925	43.478	5.01	0.00	0.00	5.36
502	547	3.701040	GGCTTCATGTATCACAAACCCAT	59.299	43.478	0.00	0.00	0.00	4.00
503	548	3.088532	GGCTTCATGTATCACAAACCCA	58.911	45.455	0.00	0.00	0.00	4.51
543	588	5.931146	AGCAAGAGAGAGAAATAACACACAG	59.069	40.000	0.00	0.00	0.00	3.66
545	590	5.390356	GCAGCAAGAGAGAGAAATAACACAC	60.390	44.000	0.00	0.00	0.00	3.82
556	601	1.270732	ACACTTGGCAGCAAGAGAGAG	60.271	52.381	9.38	0.00	36.16	3.20
674	1008	6.006275	TCCTTGATTCCAAAAGAGGGATAG	57.994	41.667	0.00	0.00	33.63	2.08
725	1132	6.987403	TTTAATTTGCAAGTTAGGTTCCCT	57.013	33.333	13.30	0.00	37.71	4.20
735	1142	8.576442	ACAACTAGCACTATTTAATTTGCAAGT	58.424	29.630	0.00	0.00	37.44	3.16
999	1426	4.960469	TCGACTCCATGTCCCTTTTATAGT	59.040	41.667	0.00	0.00	42.49	2.12
1019	1446	2.333417	GCCTGTCTCGGTGACTCGA	61.333	63.158	11.07	0.00	45.54	4.04
1028	1455	3.123620	GCTGCCTTGCCTGTCTCG	61.124	66.667	0.00	0.00	0.00	4.04
1045	1472	4.834453	CTGCCTCTGCCTCTGCCG	62.834	72.222	0.00	0.00	36.33	5.69
1397	1827	0.749454	AGGACAAGGATGCAATCGCC	60.749	55.000	0.00	0.00	46.86	5.54
1426	1856	3.904800	TGGTGGATGCGATTCTTTCTA	57.095	42.857	0.00	0.00	0.00	2.10
1459	1906	2.037772	AGCAAGGACATGAACTCGAAGT	59.962	45.455	0.00	0.00	0.00	3.01
1517	1973	0.035056	CCCTTGTTGGCCTCCTGTAG	60.035	60.000	3.32	0.00	0.00	2.74
1619	2075	3.056536	CGTCCTTGTCTTTCTCCTGATCA	60.057	47.826	0.00	0.00	0.00	2.92
1629	2085	1.663702	CGTCGCCGTCCTTGTCTTT	60.664	57.895	0.00	0.00	0.00	2.52
1838	2303	7.184779	GCCCGATTTATTGAAAGTAGTAACAC	58.815	38.462	0.00	0.00	0.00	3.32
1841	2306	6.036300	CACGCCCGATTTATTGAAAGTAGTAA	59.964	38.462	0.00	0.00	0.00	2.24
1853	2318	0.465460	ATGGTGCACGCCCGATTTAT	60.465	50.000	11.45	0.00	0.00	1.40
1860	2325	1.153784	CAATCAATGGTGCACGCCC	60.154	57.895	11.45	0.00	0.00	6.13
1895	2360	8.727910	GGTTTCCCGTTCCTAAATAATATGATC	58.272	37.037	0.00	0.00	0.00	2.92
1896	2361	7.668469	GGGTTTCCCGTTCCTAAATAATATGAT	59.332	37.037	0.00	0.00	32.13	2.45
1897	2362	6.999871	GGGTTTCCCGTTCCTAAATAATATGA	59.000	38.462	0.00	0.00	32.13	2.15
1898	2363	6.208007	GGGGTTTCCCGTTCCTAAATAATATG	59.792	42.308	0.00	0.00	46.66	1.78
1931	2406	1.089112	CATTTGGAGCGCTGTGATCA	58.911	50.000	18.48	1.85	33.60	2.92
2058	2533	1.415374	GCGAAGAAGCTGTACGTCAA	58.585	50.000	0.00	0.00	0.00	3.18
2210	2685	2.222027	CCACTGAAGTTCACCACCTTC	58.778	52.381	0.08	0.00	38.03	3.46
2346	2825	0.664767	ACTCAACGAGCTTGCGTCTC	60.665	55.000	0.00	0.00	44.86	3.36
2347	2826	0.596577	TACTCAACGAGCTTGCGTCT	59.403	50.000	0.00	0.00	44.86	4.18
2371	2850	0.459078	TCGCTGAGAAGGCTGAGATG	59.541	55.000	0.00	0.00	0.00	2.90
2372	2851	0.746063	CTCGCTGAGAAGGCTGAGAT	59.254	55.000	0.00	0.00	34.72	2.75
2390	2869	6.602009	GCACTAGTTTTATTTACCCATCACCT	59.398	38.462	0.00	0.00	0.00	4.00
2422	2915	3.277142	TCTGTGCGACTAGTCCTATGA	57.723	47.619	17.23	6.71	0.00	2.15
2429	2922	2.505405	TGAGACTTCTGTGCGACTAGT	58.495	47.619	0.00	0.00	0.00	2.57
2439	2932	7.172875	AGTTCATTCAGAAACATGAGACTTCTG	59.827	37.037	17.65	17.65	44.85	3.02
2547	3040	7.095229	CCTTGATGTCTTTCGATGTTTTACTGA	60.095	37.037	0.00	0.00	0.00	3.41
2551	3044	7.921786	ATCCTTGATGTCTTTCGATGTTTTA	57.078	32.000	0.00	0.00	0.00	1.52
2554	3047	6.313905	GTGTATCCTTGATGTCTTTCGATGTT	59.686	38.462	0.00	0.00	0.00	2.71
2620	3117	1.241165	TCACTGCGACGAGGTCTTTA	58.759	50.000	0.00	0.00	0.00	1.85
2628	3125	2.479837	AGTTTTTCATCACTGCGACGA	58.520	42.857	0.00	0.00	0.00	4.20
2665	3168	1.066071	TCCGTGTGTTGTCTTTGGTGA	60.066	47.619	0.00	0.00	0.00	4.02
2750	3255	5.511386	AAACTCAAGATCCTTGATCAGGT	57.489	39.130	9.51	2.53	44.37	4.00
2753	3258	6.659242	GGGTAAAAACTCAAGATCCTTGATCA	59.341	38.462	9.51	0.00	41.12	2.92
2774	3279	5.131142	GGGATCTCAGATTTTCTTCAGGGTA	59.869	44.000	0.00	0.00	0.00	3.69
2785	3290	6.168389	GCATTGTTTTTGGGATCTCAGATTT	58.832	36.000	0.00	0.00	0.00	2.17
2845	3353	1.272147	GGTGAAAGCCCAAGATCTGGT	60.272	52.381	0.00	0.00	44.76	4.00
3074	3586	8.086522	GTCTAAGTATAGATTTCCATGGCGTTA	58.913	37.037	6.96	0.00	40.21	3.18
3107	3619	0.729816	GCTGTCTTCTCGGTGTCGTC	60.730	60.000	0.00	0.00	37.69	4.20
3154	3668	1.228894	TCACCTTCGGCCAGAGAGT	60.229	57.895	2.24	0.00	0.00	3.24
3201	3715	3.746751	GCTTGGCATCACTGGACATCTAT	60.747	47.826	0.00	0.00	0.00	1.98
3207	3721	3.044059	GCGCTTGGCATCACTGGAC	62.044	63.158	0.00	0.00	42.87	4.02
3221	3735	2.036256	ATCCCAGCTTTTGGCGCT	59.964	55.556	7.64	0.00	46.32	5.92
3383	3898	1.118965	TCGGAGGAGTTTGTCAGGCA	61.119	55.000	0.00	0.00	0.00	4.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.