Multiple sequence alignment - TraesCS5A01G091100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G091100 chr5A 100.000 2426 0 0 1 2426 125229652 125227227 0.000000e+00 4481.0
1 TraesCS5A01G091100 chr5A 93.626 1161 59 10 333 1487 692551853 692553004 0.000000e+00 1720.0
2 TraesCS5A01G091100 chr5A 93.373 1162 61 11 333 1487 692545284 692546436 0.000000e+00 1705.0
3 TraesCS5A01G091100 chr5A 91.964 112 8 1 1537 1647 577945956 577946067 3.230000e-34 156.0
4 TraesCS5A01G091100 chr5A 91.209 91 8 0 150 240 575084574 575084664 9.110000e-25 124.0
5 TraesCS5A01G091100 chr5A 89.691 97 9 1 1681 1777 452042193 452042098 3.280000e-24 122.0
6 TraesCS5A01G091100 chr5A 87.500 80 10 0 150 229 685261567 685261488 2.570000e-15 93.5
7 TraesCS5A01G091100 chr7D 93.557 1459 60 13 336 1775 617828530 617827087 0.000000e+00 2143.0
8 TraesCS5A01G091100 chr4D 93.971 1161 56 10 333 1487 499725581 499726733 0.000000e+00 1744.0
9 TraesCS5A01G091100 chr4D 93.621 1160 60 11 333 1487 508479473 508480623 0.000000e+00 1720.0
10 TraesCS5A01G091100 chr6B 92.845 1160 70 8 333 1487 232744579 232745730 0.000000e+00 1670.0
11 TraesCS5A01G091100 chr7B 92.826 1157 70 9 336 1487 707912337 707911189 0.000000e+00 1664.0
12 TraesCS5A01G091100 chr7B 92.661 109 8 0 1539 1647 201497399 201497291 8.980000e-35 158.0
13 TraesCS5A01G091100 chr2B 92.759 1160 70 10 333 1487 57500709 57501859 0.000000e+00 1664.0
14 TraesCS5A01G091100 chr2B 91.892 111 9 0 1540 1650 167467679 167467789 3.230000e-34 156.0
15 TraesCS5A01G091100 chr2B 80.625 160 26 5 149 305 296500826 296500669 4.240000e-23 119.0
16 TraesCS5A01G091100 chr3A 92.414 1160 75 9 333 1487 424729205 424730356 0.000000e+00 1642.0
17 TraesCS5A01G091100 chr3A 90.816 98 8 1 1683 1780 527572295 527572199 1.960000e-26 130.0
18 TraesCS5A01G091100 chr2A 92.401 1158 71 12 336 1487 737417300 737416154 0.000000e+00 1635.0
19 TraesCS5A01G091100 chr2A 86.726 226 25 5 1843 2066 762394548 762394326 1.860000e-61 246.0
20 TraesCS5A01G091100 chr2A 92.568 148 11 0 1 148 762394780 762394633 1.890000e-51 213.0
21 TraesCS5A01G091100 chr2A 97.778 90 2 0 1 90 59368689 59368778 3.230000e-34 156.0
22 TraesCS5A01G091100 chr2A 92.500 80 6 0 150 229 349314108 349314187 5.480000e-22 115.0
23 TraesCS5A01G091100 chr2A 82.963 135 15 8 154 284 568235452 568235322 5.480000e-22 115.0
24 TraesCS5A01G091100 chr2A 94.828 58 3 0 158 215 661300675 661300732 9.240000e-15 91.6
25 TraesCS5A01G091100 chr1D 98.464 651 9 1 1777 2426 256821024 256820374 0.000000e+00 1146.0
26 TraesCS5A01G091100 chr1D 98.649 148 2 0 1 148 256821173 256821026 1.850000e-66 263.0
27 TraesCS5A01G091100 chr3B 95.376 173 7 1 1606 1777 220885610 220885438 8.550000e-70 274.0
28 TraesCS5A01G091100 chr3B 93.519 108 7 0 1540 1647 125619593 125619486 6.940000e-36 161.0
29 TraesCS5A01G091100 chrUn 82.712 295 28 12 1777 2052 55127774 55127484 8.670000e-60 241.0
30 TraesCS5A01G091100 chrUn 82.712 295 28 12 1777 2052 55136026 55135736 8.670000e-60 241.0
31 TraesCS5A01G091100 chrUn 90.323 124 12 0 25 148 55127899 55127776 1.930000e-36 163.0
32 TraesCS5A01G091100 chrUn 90.323 124 12 0 25 148 55136151 55136028 1.930000e-36 163.0
33 TraesCS5A01G091100 chr3D 88.889 189 14 6 1843 2030 571040801 571040619 2.430000e-55 226.0
34 TraesCS5A01G091100 chr1B 99.091 110 1 0 1 110 678858019 678858128 5.290000e-47 198.0
35 TraesCS5A01G091100 chr1B 98.198 111 2 0 3 113 21642932 21642822 6.840000e-46 195.0
36 TraesCS5A01G091100 chr4B 97.345 113 3 0 1 113 619967421 619967309 2.460000e-45 193.0
37 TraesCS5A01G091100 chr4B 88.976 127 13 1 1533 1659 312267060 312267185 3.230000e-34 156.0
38 TraesCS5A01G091100 chr4B 91.753 97 7 1 1681 1777 349112092 349112187 1.510000e-27 134.0
39 TraesCS5A01G091100 chr4B 89.796 98 8 2 1681 1777 240141874 240141970 9.110000e-25 124.0
40 TraesCS5A01G091100 chr4B 89.796 98 8 2 1681 1777 240184732 240184828 9.110000e-25 124.0
41 TraesCS5A01G091100 chr6A 98.889 90 1 0 1 90 305758455 305758544 6.940000e-36 161.0
42 TraesCS5A01G091100 chr6A 96.053 76 0 1 1415 1487 590671545 590671470 1.180000e-23 121.0
43 TraesCS5A01G091100 chr6A 85.185 81 11 1 150 229 228971885 228971805 5.560000e-12 82.4
44 TraesCS5A01G091100 chr6A 85.000 80 12 0 150 229 541766454 541766533 5.560000e-12 82.4
45 TraesCS5A01G091100 chr5B 91.150 113 9 1 1540 1652 45943966 45943855 4.180000e-33 152.0
46 TraesCS5A01G091100 chr5B 91.150 113 9 1 1536 1647 322861108 322860996 4.180000e-33 152.0
47 TraesCS5A01G091100 chr5B 93.684 95 3 2 1681 1775 240592921 240592830 3.250000e-29 139.0
48 TraesCS5A01G091100 chr4A 91.743 109 9 0 1540 1648 338511587 338511695 4.180000e-33 152.0
49 TraesCS5A01G091100 chr4A 87.952 83 9 1 142 223 201122732 201122814 1.990000e-16 97.1
50 TraesCS5A01G091100 chr6D 89.691 97 9 1 1681 1777 175431626 175431721 3.280000e-24 122.0
51 TraesCS5A01G091100 chr7A 96.053 76 0 1 1415 1487 75362718 75362793 1.180000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G091100 chr5A 125227227 125229652 2425 True 4481.0 4481 100.0000 1 2426 1 chr5A.!!$R1 2425
1 TraesCS5A01G091100 chr5A 692551853 692553004 1151 False 1720.0 1720 93.6260 333 1487 1 chr5A.!!$F4 1154
2 TraesCS5A01G091100 chr5A 692545284 692546436 1152 False 1705.0 1705 93.3730 333 1487 1 chr5A.!!$F3 1154
3 TraesCS5A01G091100 chr7D 617827087 617828530 1443 True 2143.0 2143 93.5570 336 1775 1 chr7D.!!$R1 1439
4 TraesCS5A01G091100 chr4D 499725581 499726733 1152 False 1744.0 1744 93.9710 333 1487 1 chr4D.!!$F1 1154
5 TraesCS5A01G091100 chr4D 508479473 508480623 1150 False 1720.0 1720 93.6210 333 1487 1 chr4D.!!$F2 1154
6 TraesCS5A01G091100 chr6B 232744579 232745730 1151 False 1670.0 1670 92.8450 333 1487 1 chr6B.!!$F1 1154
7 TraesCS5A01G091100 chr7B 707911189 707912337 1148 True 1664.0 1664 92.8260 336 1487 1 chr7B.!!$R2 1151
8 TraesCS5A01G091100 chr2B 57500709 57501859 1150 False 1664.0 1664 92.7590 333 1487 1 chr2B.!!$F1 1154
9 TraesCS5A01G091100 chr3A 424729205 424730356 1151 False 1642.0 1642 92.4140 333 1487 1 chr3A.!!$F1 1154
10 TraesCS5A01G091100 chr2A 737416154 737417300 1146 True 1635.0 1635 92.4010 336 1487 1 chr2A.!!$R2 1151
11 TraesCS5A01G091100 chr1D 256820374 256821173 799 True 704.5 1146 98.5565 1 2426 2 chr1D.!!$R1 2425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 330 0.034477 AATCCAACCCGCGATTCCTT 60.034 50.0 8.23 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1781 0.798009 CTAGCAAAAATGCCCGTGCG 60.798 55.0 0.0 0.0 41.9 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.466812 TGAGTTGTATCTTCAATCTCTTGCA 58.533 36.000 0.00 0.00 32.41 4.08
72 73 6.098124 TCAATCAAGGGTTCAAATTGTCAAGT 59.902 34.615 0.00 0.00 0.00 3.16
73 74 5.930837 TCAAGGGTTCAAATTGTCAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
74 75 6.293004 TCAAGGGTTCAAATTGTCAAGTTT 57.707 33.333 0.00 0.00 0.00 2.66
75 76 6.706295 TCAAGGGTTCAAATTGTCAAGTTTT 58.294 32.000 0.00 0.00 0.00 2.43
76 77 7.841956 TCAAGGGTTCAAATTGTCAAGTTTTA 58.158 30.769 0.00 0.00 0.00 1.52
77 78 7.978975 TCAAGGGTTCAAATTGTCAAGTTTTAG 59.021 33.333 0.00 0.00 0.00 1.85
78 79 6.280643 AGGGTTCAAATTGTCAAGTTTTAGC 58.719 36.000 0.00 0.00 0.00 3.09
79 80 6.098266 AGGGTTCAAATTGTCAAGTTTTAGCT 59.902 34.615 0.00 0.00 0.00 3.32
80 81 6.200854 GGGTTCAAATTGTCAAGTTTTAGCTG 59.799 38.462 0.00 0.00 0.00 4.24
81 82 6.756542 GGTTCAAATTGTCAAGTTTTAGCTGT 59.243 34.615 0.00 0.00 0.00 4.40
82 83 7.254084 GGTTCAAATTGTCAAGTTTTAGCTGTG 60.254 37.037 0.00 0.00 0.00 3.66
83 84 7.094508 TCAAATTGTCAAGTTTTAGCTGTGA 57.905 32.000 0.00 0.00 0.00 3.58
84 85 7.195646 TCAAATTGTCAAGTTTTAGCTGTGAG 58.804 34.615 0.00 0.00 0.00 3.51
85 86 6.699575 AATTGTCAAGTTTTAGCTGTGAGT 57.300 33.333 0.00 0.00 0.00 3.41
86 87 5.484173 TTGTCAAGTTTTAGCTGTGAGTG 57.516 39.130 0.00 0.00 0.00 3.51
87 88 4.513442 TGTCAAGTTTTAGCTGTGAGTGT 58.487 39.130 0.00 0.00 0.00 3.55
88 89 5.666462 TGTCAAGTTTTAGCTGTGAGTGTA 58.334 37.500 0.00 0.00 0.00 2.90
89 90 5.753438 TGTCAAGTTTTAGCTGTGAGTGTAG 59.247 40.000 0.00 0.00 0.00 2.74
90 91 5.177696 GTCAAGTTTTAGCTGTGAGTGTAGG 59.822 44.000 0.00 0.00 0.00 3.18
91 92 5.069914 TCAAGTTTTAGCTGTGAGTGTAGGA 59.930 40.000 0.00 0.00 0.00 2.94
92 93 5.546621 AGTTTTAGCTGTGAGTGTAGGAA 57.453 39.130 0.00 0.00 0.00 3.36
93 94 5.925509 AGTTTTAGCTGTGAGTGTAGGAAA 58.074 37.500 0.00 0.00 0.00 3.13
94 95 5.992217 AGTTTTAGCTGTGAGTGTAGGAAAG 59.008 40.000 0.00 0.00 0.00 2.62
95 96 5.801531 TTTAGCTGTGAGTGTAGGAAAGA 57.198 39.130 0.00 0.00 0.00 2.52
96 97 5.801531 TTAGCTGTGAGTGTAGGAAAGAA 57.198 39.130 0.00 0.00 0.00 2.52
97 98 3.996480 AGCTGTGAGTGTAGGAAAGAAC 58.004 45.455 0.00 0.00 0.00 3.01
98 99 3.067833 GCTGTGAGTGTAGGAAAGAACC 58.932 50.000 0.00 0.00 0.00 3.62
99 100 3.494398 GCTGTGAGTGTAGGAAAGAACCA 60.494 47.826 0.00 0.00 0.00 3.67
100 101 4.804261 GCTGTGAGTGTAGGAAAGAACCAT 60.804 45.833 0.00 0.00 0.00 3.55
101 102 5.568825 GCTGTGAGTGTAGGAAAGAACCATA 60.569 44.000 0.00 0.00 0.00 2.74
102 103 6.428083 TGTGAGTGTAGGAAAGAACCATAA 57.572 37.500 0.00 0.00 0.00 1.90
103 104 7.016153 TGTGAGTGTAGGAAAGAACCATAAT 57.984 36.000 0.00 0.00 0.00 1.28
104 105 7.103641 TGTGAGTGTAGGAAAGAACCATAATC 58.896 38.462 0.00 0.00 0.00 1.75
105 106 7.103641 GTGAGTGTAGGAAAGAACCATAATCA 58.896 38.462 0.00 0.00 0.00 2.57
106 107 7.606456 GTGAGTGTAGGAAAGAACCATAATCAA 59.394 37.037 0.00 0.00 0.00 2.57
107 108 8.160765 TGAGTGTAGGAAAGAACCATAATCAAA 58.839 33.333 0.00 0.00 0.00 2.69
108 109 8.336801 AGTGTAGGAAAGAACCATAATCAAAC 57.663 34.615 0.00 0.00 0.00 2.93
109 110 7.119262 AGTGTAGGAAAGAACCATAATCAAACG 59.881 37.037 0.00 0.00 0.00 3.60
110 111 7.118680 GTGTAGGAAAGAACCATAATCAAACGA 59.881 37.037 0.00 0.00 0.00 3.85
111 112 6.743575 AGGAAAGAACCATAATCAAACGAG 57.256 37.500 0.00 0.00 0.00 4.18
112 113 5.648092 AGGAAAGAACCATAATCAAACGAGG 59.352 40.000 0.00 0.00 0.00 4.63
113 114 4.965119 AAGAACCATAATCAAACGAGGC 57.035 40.909 0.00 0.00 0.00 4.70
114 115 4.222124 AGAACCATAATCAAACGAGGCT 57.778 40.909 0.00 0.00 0.00 4.58
115 116 3.941483 AGAACCATAATCAAACGAGGCTG 59.059 43.478 0.00 0.00 0.00 4.85
116 117 3.627395 ACCATAATCAAACGAGGCTGA 57.373 42.857 0.00 0.00 0.00 4.26
117 118 3.535561 ACCATAATCAAACGAGGCTGAG 58.464 45.455 0.00 0.00 0.00 3.35
118 119 3.055094 ACCATAATCAAACGAGGCTGAGT 60.055 43.478 0.00 0.00 0.00 3.41
119 120 3.941483 CCATAATCAAACGAGGCTGAGTT 59.059 43.478 0.00 0.00 0.00 3.01
120 121 4.201851 CCATAATCAAACGAGGCTGAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
121 122 1.813513 ATCAAACGAGGCTGAGTTGG 58.186 50.000 0.00 0.00 0.00 3.77
122 123 0.756294 TCAAACGAGGCTGAGTTGGA 59.244 50.000 0.00 0.00 0.00 3.53
123 124 1.347707 TCAAACGAGGCTGAGTTGGAT 59.652 47.619 0.00 0.00 0.00 3.41
124 125 1.466167 CAAACGAGGCTGAGTTGGATG 59.534 52.381 0.00 0.00 0.00 3.51
125 126 0.687354 AACGAGGCTGAGTTGGATGT 59.313 50.000 0.00 0.00 0.00 3.06
126 127 1.557099 ACGAGGCTGAGTTGGATGTA 58.443 50.000 0.00 0.00 0.00 2.29
127 128 1.204941 ACGAGGCTGAGTTGGATGTAC 59.795 52.381 0.00 0.00 0.00 2.90
128 129 1.204704 CGAGGCTGAGTTGGATGTACA 59.795 52.381 0.00 0.00 0.00 2.90
129 130 2.736719 CGAGGCTGAGTTGGATGTACAG 60.737 54.545 0.33 0.00 0.00 2.74
130 131 1.556911 AGGCTGAGTTGGATGTACAGG 59.443 52.381 0.33 0.00 0.00 4.00
131 132 1.407437 GGCTGAGTTGGATGTACAGGG 60.407 57.143 0.33 0.00 0.00 4.45
132 133 1.555075 GCTGAGTTGGATGTACAGGGA 59.445 52.381 0.33 0.00 0.00 4.20
133 134 2.027192 GCTGAGTTGGATGTACAGGGAA 60.027 50.000 0.33 0.00 0.00 3.97
134 135 3.559171 GCTGAGTTGGATGTACAGGGAAA 60.559 47.826 0.33 0.00 0.00 3.13
135 136 4.651778 CTGAGTTGGATGTACAGGGAAAA 58.348 43.478 0.33 0.00 0.00 2.29
136 137 5.255397 TGAGTTGGATGTACAGGGAAAAT 57.745 39.130 0.33 0.00 0.00 1.82
137 138 6.381498 TGAGTTGGATGTACAGGGAAAATA 57.619 37.500 0.33 0.00 0.00 1.40
138 139 6.414732 TGAGTTGGATGTACAGGGAAAATAG 58.585 40.000 0.33 0.00 0.00 1.73
139 140 6.214615 TGAGTTGGATGTACAGGGAAAATAGA 59.785 38.462 0.33 0.00 0.00 1.98
140 141 6.653989 AGTTGGATGTACAGGGAAAATAGAG 58.346 40.000 0.33 0.00 0.00 2.43
141 142 6.215636 AGTTGGATGTACAGGGAAAATAGAGT 59.784 38.462 0.33 0.00 0.00 3.24
142 143 5.989477 TGGATGTACAGGGAAAATAGAGTG 58.011 41.667 0.33 0.00 0.00 3.51
143 144 4.816925 GGATGTACAGGGAAAATAGAGTGC 59.183 45.833 0.33 0.00 0.00 4.40
144 145 5.396884 GGATGTACAGGGAAAATAGAGTGCT 60.397 44.000 0.33 0.00 0.00 4.40
145 146 5.086104 TGTACAGGGAAAATAGAGTGCTC 57.914 43.478 0.00 0.00 0.00 4.26
146 147 4.530553 TGTACAGGGAAAATAGAGTGCTCA 59.469 41.667 0.00 0.00 0.00 4.26
147 148 4.851639 ACAGGGAAAATAGAGTGCTCAT 57.148 40.909 1.82 0.00 0.00 2.90
148 149 4.521146 ACAGGGAAAATAGAGTGCTCATG 58.479 43.478 1.82 0.00 0.00 3.07
149 150 4.018960 ACAGGGAAAATAGAGTGCTCATGT 60.019 41.667 1.82 0.00 0.00 3.21
150 151 4.574013 CAGGGAAAATAGAGTGCTCATGTC 59.426 45.833 1.82 0.00 0.00 3.06
151 152 4.472833 AGGGAAAATAGAGTGCTCATGTCT 59.527 41.667 1.82 0.00 0.00 3.41
152 153 5.045286 AGGGAAAATAGAGTGCTCATGTCTT 60.045 40.000 1.82 0.00 0.00 3.01
153 154 5.649831 GGGAAAATAGAGTGCTCATGTCTTT 59.350 40.000 1.82 0.00 0.00 2.52
154 155 6.183360 GGGAAAATAGAGTGCTCATGTCTTTC 60.183 42.308 1.82 3.78 0.00 2.62
155 156 6.183360 GGAAAATAGAGTGCTCATGTCTTTCC 60.183 42.308 1.82 8.18 0.00 3.13
156 157 2.777832 AGAGTGCTCATGTCTTTCCC 57.222 50.000 1.82 0.00 0.00 3.97
157 158 2.264455 AGAGTGCTCATGTCTTTCCCT 58.736 47.619 1.82 0.00 0.00 4.20
158 159 3.445008 AGAGTGCTCATGTCTTTCCCTA 58.555 45.455 1.82 0.00 0.00 3.53
159 160 3.840666 AGAGTGCTCATGTCTTTCCCTAA 59.159 43.478 1.82 0.00 0.00 2.69
160 161 4.472833 AGAGTGCTCATGTCTTTCCCTAAT 59.527 41.667 1.82 0.00 0.00 1.73
161 162 5.663106 AGAGTGCTCATGTCTTTCCCTAATA 59.337 40.000 1.82 0.00 0.00 0.98
162 163 6.156949 AGAGTGCTCATGTCTTTCCCTAATAA 59.843 38.462 1.82 0.00 0.00 1.40
163 164 6.904626 AGTGCTCATGTCTTTCCCTAATAAT 58.095 36.000 0.00 0.00 0.00 1.28
164 165 8.034313 AGTGCTCATGTCTTTCCCTAATAATA 57.966 34.615 0.00 0.00 0.00 0.98
165 166 8.494433 AGTGCTCATGTCTTTCCCTAATAATAA 58.506 33.333 0.00 0.00 0.00 1.40
166 167 9.120538 GTGCTCATGTCTTTCCCTAATAATAAA 57.879 33.333 0.00 0.00 0.00 1.40
167 168 9.342308 TGCTCATGTCTTTCCCTAATAATAAAG 57.658 33.333 0.00 0.00 0.00 1.85
168 169 8.293157 GCTCATGTCTTTCCCTAATAATAAAGC 58.707 37.037 0.00 0.00 0.00 3.51
169 170 9.342308 CTCATGTCTTTCCCTAATAATAAAGCA 57.658 33.333 0.00 0.00 0.00 3.91
170 171 9.120538 TCATGTCTTTCCCTAATAATAAAGCAC 57.879 33.333 0.00 0.00 0.00 4.40
171 172 7.548196 TGTCTTTCCCTAATAATAAAGCACG 57.452 36.000 0.00 0.00 0.00 5.34
172 173 7.332557 TGTCTTTCCCTAATAATAAAGCACGA 58.667 34.615 0.00 0.00 0.00 4.35
173 174 7.825270 TGTCTTTCCCTAATAATAAAGCACGAA 59.175 33.333 0.00 0.00 0.00 3.85
174 175 8.837389 GTCTTTCCCTAATAATAAAGCACGAAT 58.163 33.333 0.00 0.00 0.00 3.34
175 176 9.403583 TCTTTCCCTAATAATAAAGCACGAATT 57.596 29.630 0.00 0.00 0.00 2.17
176 177 9.450807 CTTTCCCTAATAATAAAGCACGAATTG 57.549 33.333 0.00 0.00 0.00 2.32
177 178 8.740123 TTCCCTAATAATAAAGCACGAATTGA 57.260 30.769 0.00 0.00 0.00 2.57
178 179 8.378172 TCCCTAATAATAAAGCACGAATTGAG 57.622 34.615 0.00 0.00 0.00 3.02
179 180 7.990886 TCCCTAATAATAAAGCACGAATTGAGT 59.009 33.333 0.00 0.00 0.00 3.41
180 181 8.283291 CCCTAATAATAAAGCACGAATTGAGTC 58.717 37.037 0.00 0.00 0.00 3.36
181 182 9.046296 CCTAATAATAAAGCACGAATTGAGTCT 57.954 33.333 0.00 0.00 0.00 3.24
183 184 5.803020 AATAAAGCACGAATTGAGTCTCC 57.197 39.130 0.00 0.00 0.00 3.71
184 185 1.714794 AAGCACGAATTGAGTCTCCG 58.285 50.000 0.00 0.00 0.00 4.63
185 186 0.108615 AGCACGAATTGAGTCTCCGG 60.109 55.000 0.00 0.00 0.00 5.14
186 187 1.084370 GCACGAATTGAGTCTCCGGG 61.084 60.000 0.00 0.00 0.00 5.73
187 188 0.246635 CACGAATTGAGTCTCCGGGT 59.753 55.000 0.00 0.00 0.00 5.28
188 189 0.974383 ACGAATTGAGTCTCCGGGTT 59.026 50.000 0.00 0.00 0.00 4.11
189 190 1.067071 ACGAATTGAGTCTCCGGGTTC 60.067 52.381 0.00 0.00 0.00 3.62
190 191 1.067142 CGAATTGAGTCTCCGGGTTCA 60.067 52.381 0.00 0.00 0.00 3.18
191 192 2.347731 GAATTGAGTCTCCGGGTTCAC 58.652 52.381 0.00 0.00 0.00 3.18
192 193 1.645710 ATTGAGTCTCCGGGTTCACT 58.354 50.000 0.00 0.00 0.00 3.41
193 194 0.679505 TTGAGTCTCCGGGTTCACTG 59.320 55.000 0.00 0.00 0.00 3.66
194 195 0.469331 TGAGTCTCCGGGTTCACTGT 60.469 55.000 0.00 0.00 0.00 3.55
195 196 0.244178 GAGTCTCCGGGTTCACTGTC 59.756 60.000 0.00 0.00 0.00 3.51
196 197 1.080705 GTCTCCGGGTTCACTGTCG 60.081 63.158 0.00 0.00 0.00 4.35
197 198 2.432628 CTCCGGGTTCACTGTCGC 60.433 66.667 0.00 0.00 0.00 5.19
198 199 4.351938 TCCGGGTTCACTGTCGCG 62.352 66.667 0.00 0.00 39.16 5.87
201 202 4.980805 GGGTTCACTGTCGCGGCA 62.981 66.667 14.98 14.98 0.00 5.69
202 203 2.742372 GGTTCACTGTCGCGGCAT 60.742 61.111 16.48 1.01 0.00 4.40
203 204 2.325082 GGTTCACTGTCGCGGCATT 61.325 57.895 16.48 5.51 0.00 3.56
204 205 1.574428 GTTCACTGTCGCGGCATTT 59.426 52.632 16.48 0.16 0.00 2.32
205 206 0.040425 GTTCACTGTCGCGGCATTTT 60.040 50.000 16.48 0.00 0.00 1.82
206 207 0.665835 TTCACTGTCGCGGCATTTTT 59.334 45.000 16.48 0.00 0.00 1.94
207 208 1.514003 TCACTGTCGCGGCATTTTTA 58.486 45.000 16.48 0.00 0.00 1.52
208 209 1.195900 TCACTGTCGCGGCATTTTTAC 59.804 47.619 16.48 0.00 0.00 2.01
209 210 1.069568 CACTGTCGCGGCATTTTTACA 60.070 47.619 16.48 2.89 0.00 2.41
210 211 1.069500 ACTGTCGCGGCATTTTTACAC 60.069 47.619 16.48 0.00 0.00 2.90
211 212 0.945099 TGTCGCGGCATTTTTACACA 59.055 45.000 10.57 0.00 0.00 3.72
212 213 1.333931 TGTCGCGGCATTTTTACACAA 59.666 42.857 10.57 0.00 0.00 3.33
213 214 2.223502 TGTCGCGGCATTTTTACACAAA 60.224 40.909 10.57 0.00 0.00 2.83
214 215 2.403698 GTCGCGGCATTTTTACACAAAG 59.596 45.455 5.47 0.00 0.00 2.77
215 216 1.718711 CGCGGCATTTTTACACAAAGG 59.281 47.619 0.00 0.00 0.00 3.11
216 217 2.749776 GCGGCATTTTTACACAAAGGT 58.250 42.857 0.00 0.00 0.00 3.50
217 218 2.729360 GCGGCATTTTTACACAAAGGTC 59.271 45.455 0.00 0.00 0.00 3.85
218 219 3.313690 CGGCATTTTTACACAAAGGTCC 58.686 45.455 0.00 0.00 0.00 4.46
219 220 3.243569 CGGCATTTTTACACAAAGGTCCA 60.244 43.478 0.00 0.00 0.00 4.02
220 221 4.560513 CGGCATTTTTACACAAAGGTCCAT 60.561 41.667 0.00 0.00 0.00 3.41
221 222 4.690280 GGCATTTTTACACAAAGGTCCATG 59.310 41.667 0.00 0.00 0.00 3.66
222 223 5.296748 GCATTTTTACACAAAGGTCCATGT 58.703 37.500 0.00 0.00 0.00 3.21
228 229 3.457610 CACAAAGGTCCATGTGCTTTT 57.542 42.857 13.10 0.00 40.32 2.27
229 230 3.125316 CACAAAGGTCCATGTGCTTTTG 58.875 45.455 13.10 15.02 40.32 2.44
230 231 2.102925 ACAAAGGTCCATGTGCTTTTGG 59.897 45.455 18.45 0.00 31.64 3.28
231 232 1.341080 AAGGTCCATGTGCTTTTGGG 58.659 50.000 0.00 0.00 33.62 4.12
232 233 0.542702 AGGTCCATGTGCTTTTGGGG 60.543 55.000 0.00 0.00 33.62 4.96
233 234 0.541764 GGTCCATGTGCTTTTGGGGA 60.542 55.000 0.00 0.00 33.62 4.81
234 235 1.337118 GTCCATGTGCTTTTGGGGAA 58.663 50.000 0.00 0.00 33.62 3.97
235 236 1.901833 GTCCATGTGCTTTTGGGGAAT 59.098 47.619 0.00 0.00 33.62 3.01
236 237 2.302733 GTCCATGTGCTTTTGGGGAATT 59.697 45.455 0.00 0.00 33.62 2.17
237 238 3.513515 GTCCATGTGCTTTTGGGGAATTA 59.486 43.478 0.00 0.00 33.62 1.40
238 239 4.020662 GTCCATGTGCTTTTGGGGAATTAA 60.021 41.667 0.00 0.00 33.62 1.40
239 240 4.020662 TCCATGTGCTTTTGGGGAATTAAC 60.021 41.667 0.00 0.00 33.62 2.01
240 241 4.262808 CCATGTGCTTTTGGGGAATTAACA 60.263 41.667 0.00 0.00 0.00 2.41
241 242 4.329462 TGTGCTTTTGGGGAATTAACAC 57.671 40.909 0.00 0.00 0.00 3.32
242 243 3.243569 TGTGCTTTTGGGGAATTAACACG 60.244 43.478 0.00 0.00 0.00 4.49
243 244 2.959707 TGCTTTTGGGGAATTAACACGT 59.040 40.909 0.00 0.00 0.00 4.49
244 245 3.004944 TGCTTTTGGGGAATTAACACGTC 59.995 43.478 0.00 0.00 0.00 4.34
245 246 3.817238 CTTTTGGGGAATTAACACGTCG 58.183 45.455 0.00 0.00 0.00 5.12
246 247 2.547299 TTGGGGAATTAACACGTCGT 57.453 45.000 0.00 0.00 0.00 4.34
247 248 2.083167 TGGGGAATTAACACGTCGTC 57.917 50.000 0.00 0.00 0.00 4.20
248 249 1.338011 TGGGGAATTAACACGTCGTCC 60.338 52.381 0.00 0.00 0.00 4.79
249 250 1.362768 GGGAATTAACACGTCGTCCC 58.637 55.000 0.00 0.00 38.12 4.46
250 251 1.066645 GGGAATTAACACGTCGTCCCT 60.067 52.381 8.43 0.00 41.37 4.20
251 252 2.265683 GGAATTAACACGTCGTCCCTC 58.734 52.381 0.00 0.00 0.00 4.30
252 253 2.094338 GGAATTAACACGTCGTCCCTCT 60.094 50.000 0.00 0.00 0.00 3.69
253 254 3.582780 GAATTAACACGTCGTCCCTCTT 58.417 45.455 0.00 0.00 0.00 2.85
254 255 3.672767 ATTAACACGTCGTCCCTCTTT 57.327 42.857 0.00 0.00 0.00 2.52
255 256 4.789012 ATTAACACGTCGTCCCTCTTTA 57.211 40.909 0.00 0.00 0.00 1.85
256 257 4.582701 TTAACACGTCGTCCCTCTTTAA 57.417 40.909 0.00 0.00 0.00 1.52
257 258 2.719426 ACACGTCGTCCCTCTTTAAG 57.281 50.000 0.00 0.00 0.00 1.85
258 259 1.959282 ACACGTCGTCCCTCTTTAAGT 59.041 47.619 0.00 0.00 0.00 2.24
259 260 2.030451 ACACGTCGTCCCTCTTTAAGTC 60.030 50.000 0.00 0.00 0.00 3.01
260 261 1.198637 ACGTCGTCCCTCTTTAAGTCG 59.801 52.381 0.00 0.00 0.00 4.18
261 262 1.466167 CGTCGTCCCTCTTTAAGTCGA 59.534 52.381 0.00 0.00 0.00 4.20
262 263 2.097142 CGTCGTCCCTCTTTAAGTCGAT 59.903 50.000 0.00 0.00 0.00 3.59
263 264 3.693654 GTCGTCCCTCTTTAAGTCGATC 58.306 50.000 0.00 0.00 0.00 3.69
264 265 3.377798 GTCGTCCCTCTTTAAGTCGATCT 59.622 47.826 0.00 0.00 0.00 2.75
265 266 4.574013 GTCGTCCCTCTTTAAGTCGATCTA 59.426 45.833 0.00 0.00 0.00 1.98
266 267 5.065731 GTCGTCCCTCTTTAAGTCGATCTAA 59.934 44.000 0.00 0.00 0.00 2.10
267 268 5.296283 TCGTCCCTCTTTAAGTCGATCTAAG 59.704 44.000 0.00 0.00 0.00 2.18
268 269 5.296283 CGTCCCTCTTTAAGTCGATCTAAGA 59.704 44.000 0.00 0.00 0.00 2.10
269 270 6.183360 CGTCCCTCTTTAAGTCGATCTAAGAA 60.183 42.308 0.00 0.00 0.00 2.52
270 271 7.545489 GTCCCTCTTTAAGTCGATCTAAGAAA 58.455 38.462 0.00 0.00 0.00 2.52
271 272 8.033626 GTCCCTCTTTAAGTCGATCTAAGAAAA 58.966 37.037 0.00 0.00 0.00 2.29
272 273 8.759782 TCCCTCTTTAAGTCGATCTAAGAAAAT 58.240 33.333 0.00 0.00 0.00 1.82
273 274 8.821894 CCCTCTTTAAGTCGATCTAAGAAAATG 58.178 37.037 0.00 0.00 0.00 2.32
274 275 9.372369 CCTCTTTAAGTCGATCTAAGAAAATGT 57.628 33.333 0.00 0.00 0.00 2.71
314 315 5.830000 AAACCCTGCGTTTATAAGAATCC 57.170 39.130 0.00 0.00 43.03 3.01
315 316 4.497291 ACCCTGCGTTTATAAGAATCCA 57.503 40.909 0.00 0.00 0.00 3.41
316 317 4.850680 ACCCTGCGTTTATAAGAATCCAA 58.149 39.130 0.00 0.00 0.00 3.53
317 318 4.638865 ACCCTGCGTTTATAAGAATCCAAC 59.361 41.667 0.00 0.00 0.00 3.77
318 319 4.036380 CCCTGCGTTTATAAGAATCCAACC 59.964 45.833 0.00 0.00 0.00 3.77
319 320 4.036380 CCTGCGTTTATAAGAATCCAACCC 59.964 45.833 0.00 0.00 0.00 4.11
320 321 3.623960 TGCGTTTATAAGAATCCAACCCG 59.376 43.478 0.00 0.00 0.00 5.28
321 322 3.547413 GCGTTTATAAGAATCCAACCCGC 60.547 47.826 0.00 0.00 0.00 6.13
322 323 3.302870 CGTTTATAAGAATCCAACCCGCG 60.303 47.826 0.00 0.00 0.00 6.46
323 324 3.823281 TTATAAGAATCCAACCCGCGA 57.177 42.857 8.23 0.00 0.00 5.87
324 325 2.930826 ATAAGAATCCAACCCGCGAT 57.069 45.000 8.23 0.00 0.00 4.58
325 326 2.702592 TAAGAATCCAACCCGCGATT 57.297 45.000 8.23 0.00 0.00 3.34
326 327 1.379527 AAGAATCCAACCCGCGATTC 58.620 50.000 8.23 7.84 43.07 2.52
327 328 0.463833 AGAATCCAACCCGCGATTCC 60.464 55.000 8.23 0.00 43.54 3.01
328 329 0.463833 GAATCCAACCCGCGATTCCT 60.464 55.000 8.23 0.00 38.86 3.36
329 330 0.034477 AATCCAACCCGCGATTCCTT 60.034 50.000 8.23 0.00 0.00 3.36
330 331 0.034477 ATCCAACCCGCGATTCCTTT 60.034 50.000 8.23 0.00 0.00 3.11
331 332 0.250989 TCCAACCCGCGATTCCTTTT 60.251 50.000 8.23 0.00 0.00 2.27
334 335 1.092348 AACCCGCGATTCCTTTTAGC 58.908 50.000 8.23 0.00 0.00 3.09
386 387 5.121142 CCATTGCACTAATCTTTTGCTTTGG 59.879 40.000 0.00 0.00 37.16 3.28
400 401 1.735700 GCTTTGGGCGATTGGCTAAAC 60.736 52.381 13.24 7.73 44.32 2.01
435 436 5.335583 CCTTTGGAATAATCTTTCGTGCACA 60.336 40.000 18.64 0.81 0.00 4.57
530 531 5.645056 TGCCCTTGGATAAATCACTCATA 57.355 39.130 0.00 0.00 0.00 2.15
582 584 3.494626 TGCTCACGAGAACAGAAACATTC 59.505 43.478 0.00 0.00 0.00 2.67
781 784 6.640518 TCTATGCTCACTAGAACGGAAAAAT 58.359 36.000 0.00 0.00 0.00 1.82
782 785 7.778083 TCTATGCTCACTAGAACGGAAAAATA 58.222 34.615 0.00 0.00 0.00 1.40
783 786 8.421784 TCTATGCTCACTAGAACGGAAAAATAT 58.578 33.333 0.00 0.00 0.00 1.28
809 812 5.900339 TTATCTGCTTATTTTAGCGTCGG 57.100 39.130 0.00 0.00 44.18 4.79
876 880 4.579869 TGCCCTTCTCTGTCAAACTTATC 58.420 43.478 0.00 0.00 0.00 1.75
937 941 6.169800 TGCGCTTCTTTGGCACATATATATA 58.830 36.000 9.73 0.00 39.30 0.86
938 942 6.823182 TGCGCTTCTTTGGCACATATATATAT 59.177 34.615 9.73 0.00 39.30 0.86
1143 1154 5.399858 CAATCAGTTCAAGCAATTCTCAGG 58.600 41.667 0.00 0.00 0.00 3.86
1325 1337 6.750039 CGTTTTAACATGGACACTTCAAAAGT 59.250 34.615 0.00 0.00 44.06 2.66
1336 1348 6.037610 GGACACTTCAAAAGTATATCTGCCAG 59.962 42.308 0.00 0.00 40.46 4.85
1409 1431 2.679355 TTGCGTTCACATGTAGTTGC 57.321 45.000 0.00 1.45 0.00 4.17
1410 1432 1.587547 TGCGTTCACATGTAGTTGCA 58.412 45.000 0.00 4.39 0.00 4.08
1531 1556 8.965172 GCAATAGCAACTGATATCTGAATTTTG 58.035 33.333 15.75 10.41 41.58 2.44
1548 1573 8.463930 TGAATTTTGTTTGATGTACTTCCTCT 57.536 30.769 6.32 0.00 0.00 3.69
1557 1582 6.174720 TGATGTACTTCCTCTGTTCACTTT 57.825 37.500 6.32 0.00 0.00 2.66
1569 1594 9.403583 TCCTCTGTTCACTTTTATAAGTTGTTT 57.596 29.630 0.00 0.00 41.85 2.83
1597 1622 7.333921 AGACAAATGAAATTGAGTTGTTTTGCA 59.666 29.630 0.00 0.00 36.10 4.08
1642 1667 8.507249 CAAAGACTTATAAAAGTGAACAGAGGG 58.493 37.037 0.00 0.00 46.09 4.30
1643 1668 7.554959 AGACTTATAAAAGTGAACAGAGGGA 57.445 36.000 0.00 0.00 46.09 4.20
1664 1689 4.635765 GGAGTAGCTAATTGTGCATCAACA 59.364 41.667 0.00 0.00 38.97 3.33
1696 1721 7.759489 AAGCACTAGGTCATAAATCAAACAA 57.241 32.000 0.00 0.00 0.00 2.83
1727 1752 2.025636 ATAGGCTATGCTTACGGGGT 57.974 50.000 6.15 0.00 0.00 4.95
1728 1753 1.045407 TAGGCTATGCTTACGGGGTG 58.955 55.000 0.00 0.00 0.00 4.61
1729 1754 0.981277 AGGCTATGCTTACGGGGTGT 60.981 55.000 0.00 0.00 0.00 4.16
1730 1755 0.814010 GGCTATGCTTACGGGGTGTG 60.814 60.000 0.00 0.00 0.00 3.82
1731 1756 0.177141 GCTATGCTTACGGGGTGTGA 59.823 55.000 0.00 0.00 0.00 3.58
1732 1757 1.202651 GCTATGCTTACGGGGTGTGAT 60.203 52.381 0.00 0.00 0.00 3.06
1733 1758 2.483876 CTATGCTTACGGGGTGTGATG 58.516 52.381 0.00 0.00 0.00 3.07
1734 1759 0.908910 ATGCTTACGGGGTGTGATGA 59.091 50.000 0.00 0.00 0.00 2.92
1735 1760 0.908910 TGCTTACGGGGTGTGATGAT 59.091 50.000 0.00 0.00 0.00 2.45
1775 1800 0.798009 CGCACGGGCATTTTTGCTAG 60.798 55.000 11.77 0.00 41.24 3.42
1776 1801 0.243636 GCACGGGCATTTTTGCTAGT 59.756 50.000 3.77 0.00 40.72 2.57
1777 1802 1.336795 GCACGGGCATTTTTGCTAGTT 60.337 47.619 3.77 0.00 40.72 2.24
1778 1803 2.094957 GCACGGGCATTTTTGCTAGTTA 60.095 45.455 3.77 0.00 40.72 2.24
1779 1804 3.758300 CACGGGCATTTTTGCTAGTTAG 58.242 45.455 0.00 0.00 34.73 2.34
1780 1805 2.752903 ACGGGCATTTTTGCTAGTTAGG 59.247 45.455 0.00 0.00 34.73 2.69
1781 1806 2.479560 CGGGCATTTTTGCTAGTTAGGC 60.480 50.000 0.00 0.00 34.73 3.93
1782 1807 2.495669 GGGCATTTTTGCTAGTTAGGCA 59.504 45.455 0.00 0.00 37.97 4.75
1783 1808 3.056179 GGGCATTTTTGCTAGTTAGGCAA 60.056 43.478 0.00 0.00 46.12 4.52
1794 1819 8.446599 TTGCTAGTTAGGCAAAAATATAGACC 57.553 34.615 0.00 0.00 45.05 3.85
1795 1820 7.570132 TGCTAGTTAGGCAAAAATATAGACCA 58.430 34.615 0.00 0.00 36.71 4.02
1796 1821 7.715249 TGCTAGTTAGGCAAAAATATAGACCAG 59.285 37.037 0.00 0.00 36.71 4.00
1797 1822 7.931948 GCTAGTTAGGCAAAAATATAGACCAGA 59.068 37.037 0.00 0.00 0.00 3.86
1798 1823 9.832445 CTAGTTAGGCAAAAATATAGACCAGAA 57.168 33.333 0.00 0.00 0.00 3.02
1800 1825 9.700831 AGTTAGGCAAAAATATAGACCAGAAAT 57.299 29.630 0.00 0.00 0.00 2.17
1804 1829 9.034800 AGGCAAAAATATAGACCAGAAATTTGA 57.965 29.630 0.00 0.00 0.00 2.69
1805 1830 9.822185 GGCAAAAATATAGACCAGAAATTTGAT 57.178 29.630 0.00 0.00 0.00 2.57
1816 1841 9.807649 AGACCAGAAATTTGATAAATATTGTGC 57.192 29.630 0.00 0.00 0.00 4.57
1817 1842 8.947055 ACCAGAAATTTGATAAATATTGTGCC 57.053 30.769 0.00 0.00 0.00 5.01
1818 1843 8.538701 ACCAGAAATTTGATAAATATTGTGCCA 58.461 29.630 0.00 0.00 0.00 4.92
1819 1844 9.381033 CCAGAAATTTGATAAATATTGTGCCAA 57.619 29.630 0.00 0.00 0.00 4.52
1832 1857 9.553064 AAATATTGTGCCAAATCTTTACAACAA 57.447 25.926 0.00 0.00 34.50 2.83
1833 1858 6.843069 ATTGTGCCAAATCTTTACAACAAC 57.157 33.333 0.00 0.00 34.50 3.32
1834 1859 4.355437 TGTGCCAAATCTTTACAACAACG 58.645 39.130 0.00 0.00 0.00 4.10
1835 1860 4.142359 TGTGCCAAATCTTTACAACAACGT 60.142 37.500 0.00 0.00 0.00 3.99
1922 1947 9.396938 GATATATGTCATCTTCTCGCATCTATG 57.603 37.037 0.00 0.00 0.00 2.23
2166 2192 1.293062 ATTGGGGTGCAGAGATCACT 58.707 50.000 0.00 0.00 34.97 3.41
2217 2243 4.934001 GGATGCACATACTCACATCTATGG 59.066 45.833 0.00 0.00 39.10 2.74
2356 2382 2.440409 CATGAGGAAAACCACAGAGGG 58.560 52.381 0.00 0.00 43.89 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.669125 TGACAATTTGAACCCTTGATTGAT 57.331 33.333 2.79 0.00 33.24 2.57
72 73 6.169557 TCTTTCCTACACTCACAGCTAAAA 57.830 37.500 0.00 0.00 0.00 1.52
73 74 5.801531 TCTTTCCTACACTCACAGCTAAA 57.198 39.130 0.00 0.00 0.00 1.85
74 75 5.510861 GGTTCTTTCCTACACTCACAGCTAA 60.511 44.000 0.00 0.00 0.00 3.09
75 76 4.021368 GGTTCTTTCCTACACTCACAGCTA 60.021 45.833 0.00 0.00 0.00 3.32
76 77 3.244249 GGTTCTTTCCTACACTCACAGCT 60.244 47.826 0.00 0.00 0.00 4.24
77 78 3.067833 GGTTCTTTCCTACACTCACAGC 58.932 50.000 0.00 0.00 0.00 4.40
78 79 4.336889 TGGTTCTTTCCTACACTCACAG 57.663 45.455 0.00 0.00 0.00 3.66
79 80 4.974645 ATGGTTCTTTCCTACACTCACA 57.025 40.909 0.00 0.00 0.00 3.58
80 81 7.103641 TGATTATGGTTCTTTCCTACACTCAC 58.896 38.462 0.00 0.00 0.00 3.51
81 82 7.252612 TGATTATGGTTCTTTCCTACACTCA 57.747 36.000 0.00 0.00 0.00 3.41
82 83 8.451748 GTTTGATTATGGTTCTTTCCTACACTC 58.548 37.037 0.00 0.00 0.00 3.51
83 84 7.119262 CGTTTGATTATGGTTCTTTCCTACACT 59.881 37.037 0.00 0.00 0.00 3.55
84 85 7.118680 TCGTTTGATTATGGTTCTTTCCTACAC 59.881 37.037 0.00 0.00 0.00 2.90
85 86 7.162761 TCGTTTGATTATGGTTCTTTCCTACA 58.837 34.615 0.00 0.00 0.00 2.74
86 87 7.201617 CCTCGTTTGATTATGGTTCTTTCCTAC 60.202 40.741 0.00 0.00 0.00 3.18
87 88 6.821665 CCTCGTTTGATTATGGTTCTTTCCTA 59.178 38.462 0.00 0.00 0.00 2.94
88 89 5.648092 CCTCGTTTGATTATGGTTCTTTCCT 59.352 40.000 0.00 0.00 0.00 3.36
89 90 5.676331 GCCTCGTTTGATTATGGTTCTTTCC 60.676 44.000 0.00 0.00 0.00 3.13
90 91 5.123979 AGCCTCGTTTGATTATGGTTCTTTC 59.876 40.000 0.00 0.00 0.00 2.62
91 92 5.010282 AGCCTCGTTTGATTATGGTTCTTT 58.990 37.500 0.00 0.00 0.00 2.52
92 93 4.396166 CAGCCTCGTTTGATTATGGTTCTT 59.604 41.667 0.00 0.00 0.00 2.52
93 94 3.941483 CAGCCTCGTTTGATTATGGTTCT 59.059 43.478 0.00 0.00 0.00 3.01
94 95 3.938963 TCAGCCTCGTTTGATTATGGTTC 59.061 43.478 0.00 0.00 0.00 3.62
95 96 3.941483 CTCAGCCTCGTTTGATTATGGTT 59.059 43.478 0.00 0.00 0.00 3.67
96 97 3.055094 ACTCAGCCTCGTTTGATTATGGT 60.055 43.478 0.00 0.00 0.00 3.55
97 98 3.535561 ACTCAGCCTCGTTTGATTATGG 58.464 45.455 0.00 0.00 0.00 2.74
98 99 4.201851 CCAACTCAGCCTCGTTTGATTATG 60.202 45.833 0.00 0.00 0.00 1.90
99 100 3.941483 CCAACTCAGCCTCGTTTGATTAT 59.059 43.478 0.00 0.00 0.00 1.28
100 101 3.007506 TCCAACTCAGCCTCGTTTGATTA 59.992 43.478 0.00 0.00 0.00 1.75
101 102 2.154462 CCAACTCAGCCTCGTTTGATT 58.846 47.619 0.00 0.00 0.00 2.57
102 103 1.347707 TCCAACTCAGCCTCGTTTGAT 59.652 47.619 0.00 0.00 0.00 2.57
103 104 0.756294 TCCAACTCAGCCTCGTTTGA 59.244 50.000 0.00 0.00 0.00 2.69
104 105 1.466167 CATCCAACTCAGCCTCGTTTG 59.534 52.381 0.00 0.00 0.00 2.93
105 106 1.072331 ACATCCAACTCAGCCTCGTTT 59.928 47.619 0.00 0.00 0.00 3.60
106 107 0.687354 ACATCCAACTCAGCCTCGTT 59.313 50.000 0.00 0.00 0.00 3.85
107 108 1.204941 GTACATCCAACTCAGCCTCGT 59.795 52.381 0.00 0.00 0.00 4.18
108 109 1.204704 TGTACATCCAACTCAGCCTCG 59.795 52.381 0.00 0.00 0.00 4.63
109 110 2.419297 CCTGTACATCCAACTCAGCCTC 60.419 54.545 0.00 0.00 0.00 4.70
110 111 1.556911 CCTGTACATCCAACTCAGCCT 59.443 52.381 0.00 0.00 0.00 4.58
111 112 1.407437 CCCTGTACATCCAACTCAGCC 60.407 57.143 0.00 0.00 0.00 4.85
112 113 1.555075 TCCCTGTACATCCAACTCAGC 59.445 52.381 0.00 0.00 0.00 4.26
113 114 3.981071 TTCCCTGTACATCCAACTCAG 57.019 47.619 0.00 0.00 0.00 3.35
114 115 4.715534 TTTTCCCTGTACATCCAACTCA 57.284 40.909 0.00 0.00 0.00 3.41
115 116 6.650120 TCTATTTTCCCTGTACATCCAACTC 58.350 40.000 0.00 0.00 0.00 3.01
116 117 6.215636 ACTCTATTTTCCCTGTACATCCAACT 59.784 38.462 0.00 0.00 0.00 3.16
117 118 6.316390 CACTCTATTTTCCCTGTACATCCAAC 59.684 42.308 0.00 0.00 0.00 3.77
118 119 6.414732 CACTCTATTTTCCCTGTACATCCAA 58.585 40.000 0.00 0.00 0.00 3.53
119 120 5.629133 GCACTCTATTTTCCCTGTACATCCA 60.629 44.000 0.00 0.00 0.00 3.41
120 121 4.816925 GCACTCTATTTTCCCTGTACATCC 59.183 45.833 0.00 0.00 0.00 3.51
121 122 5.675538 AGCACTCTATTTTCCCTGTACATC 58.324 41.667 0.00 0.00 0.00 3.06
122 123 5.189736 TGAGCACTCTATTTTCCCTGTACAT 59.810 40.000 0.00 0.00 0.00 2.29
123 124 4.530553 TGAGCACTCTATTTTCCCTGTACA 59.469 41.667 0.00 0.00 0.00 2.90
124 125 5.086104 TGAGCACTCTATTTTCCCTGTAC 57.914 43.478 0.00 0.00 0.00 2.90
125 126 5.189736 ACATGAGCACTCTATTTTCCCTGTA 59.810 40.000 0.00 0.00 0.00 2.74
126 127 4.018960 ACATGAGCACTCTATTTTCCCTGT 60.019 41.667 0.00 0.00 0.00 4.00
127 128 4.521146 ACATGAGCACTCTATTTTCCCTG 58.479 43.478 0.00 0.00 0.00 4.45
128 129 4.472833 AGACATGAGCACTCTATTTTCCCT 59.527 41.667 0.00 0.00 0.00 4.20
129 130 4.775236 AGACATGAGCACTCTATTTTCCC 58.225 43.478 0.00 0.00 0.00 3.97
130 131 6.183360 GGAAAGACATGAGCACTCTATTTTCC 60.183 42.308 0.00 7.71 34.87 3.13
131 132 6.183360 GGGAAAGACATGAGCACTCTATTTTC 60.183 42.308 0.00 3.23 0.00 2.29
132 133 5.649831 GGGAAAGACATGAGCACTCTATTTT 59.350 40.000 0.00 0.00 0.00 1.82
133 134 5.045286 AGGGAAAGACATGAGCACTCTATTT 60.045 40.000 0.00 0.00 0.00 1.40
134 135 4.472833 AGGGAAAGACATGAGCACTCTATT 59.527 41.667 0.00 0.00 0.00 1.73
135 136 4.036518 AGGGAAAGACATGAGCACTCTAT 58.963 43.478 0.00 0.00 0.00 1.98
136 137 3.445008 AGGGAAAGACATGAGCACTCTA 58.555 45.455 0.00 0.00 0.00 2.43
137 138 2.264455 AGGGAAAGACATGAGCACTCT 58.736 47.619 0.00 0.00 0.00 3.24
138 139 2.777832 AGGGAAAGACATGAGCACTC 57.222 50.000 0.00 0.00 0.00 3.51
139 140 4.851639 ATTAGGGAAAGACATGAGCACT 57.148 40.909 0.00 0.00 0.00 4.40
140 141 8.677148 TTATTATTAGGGAAAGACATGAGCAC 57.323 34.615 0.00 0.00 0.00 4.40
141 142 9.342308 CTTTATTATTAGGGAAAGACATGAGCA 57.658 33.333 0.00 0.00 31.83 4.26
142 143 8.293157 GCTTTATTATTAGGGAAAGACATGAGC 58.707 37.037 0.00 0.00 31.83 4.26
143 144 9.342308 TGCTTTATTATTAGGGAAAGACATGAG 57.658 33.333 0.00 0.00 31.83 2.90
144 145 9.120538 GTGCTTTATTATTAGGGAAAGACATGA 57.879 33.333 0.00 0.00 31.83 3.07
145 146 8.070171 CGTGCTTTATTATTAGGGAAAGACATG 58.930 37.037 0.00 0.00 31.83 3.21
146 147 7.990886 TCGTGCTTTATTATTAGGGAAAGACAT 59.009 33.333 0.00 0.00 31.83 3.06
147 148 7.332557 TCGTGCTTTATTATTAGGGAAAGACA 58.667 34.615 0.00 0.00 31.83 3.41
148 149 7.781548 TCGTGCTTTATTATTAGGGAAAGAC 57.218 36.000 0.00 0.00 31.83 3.01
149 150 8.974060 ATTCGTGCTTTATTATTAGGGAAAGA 57.026 30.769 0.00 0.00 31.83 2.52
150 151 9.450807 CAATTCGTGCTTTATTATTAGGGAAAG 57.549 33.333 0.00 0.00 33.05 2.62
151 152 9.179909 TCAATTCGTGCTTTATTATTAGGGAAA 57.820 29.630 0.00 0.00 0.00 3.13
152 153 8.740123 TCAATTCGTGCTTTATTATTAGGGAA 57.260 30.769 0.00 0.00 0.00 3.97
153 154 7.990886 ACTCAATTCGTGCTTTATTATTAGGGA 59.009 33.333 0.00 0.00 0.00 4.20
154 155 8.154649 ACTCAATTCGTGCTTTATTATTAGGG 57.845 34.615 0.00 0.00 0.00 3.53
155 156 9.046296 AGACTCAATTCGTGCTTTATTATTAGG 57.954 33.333 0.00 0.00 0.00 2.69
157 158 9.042008 GGAGACTCAATTCGTGCTTTATTATTA 57.958 33.333 4.53 0.00 0.00 0.98
158 159 7.254455 CGGAGACTCAATTCGTGCTTTATTATT 60.254 37.037 4.53 0.00 0.00 1.40
159 160 6.201044 CGGAGACTCAATTCGTGCTTTATTAT 59.799 38.462 4.53 0.00 0.00 1.28
160 161 5.518847 CGGAGACTCAATTCGTGCTTTATTA 59.481 40.000 4.53 0.00 0.00 0.98
161 162 4.330074 CGGAGACTCAATTCGTGCTTTATT 59.670 41.667 4.53 0.00 0.00 1.40
162 163 3.865745 CGGAGACTCAATTCGTGCTTTAT 59.134 43.478 4.53 0.00 0.00 1.40
163 164 3.250744 CGGAGACTCAATTCGTGCTTTA 58.749 45.455 4.53 0.00 0.00 1.85
164 165 2.069273 CGGAGACTCAATTCGTGCTTT 58.931 47.619 4.53 0.00 0.00 3.51
165 166 1.673033 CCGGAGACTCAATTCGTGCTT 60.673 52.381 0.00 0.00 0.00 3.91
166 167 0.108615 CCGGAGACTCAATTCGTGCT 60.109 55.000 0.00 0.00 0.00 4.40
167 168 1.084370 CCCGGAGACTCAATTCGTGC 61.084 60.000 0.73 0.00 0.00 5.34
168 169 0.246635 ACCCGGAGACTCAATTCGTG 59.753 55.000 0.73 0.00 0.00 4.35
169 170 0.974383 AACCCGGAGACTCAATTCGT 59.026 50.000 0.73 0.00 0.00 3.85
170 171 1.067142 TGAACCCGGAGACTCAATTCG 60.067 52.381 0.73 0.00 0.00 3.34
171 172 2.028020 AGTGAACCCGGAGACTCAATTC 60.028 50.000 0.73 3.03 0.00 2.17
172 173 1.978580 AGTGAACCCGGAGACTCAATT 59.021 47.619 0.73 0.00 0.00 2.32
173 174 1.276421 CAGTGAACCCGGAGACTCAAT 59.724 52.381 0.73 0.00 0.00 2.57
174 175 0.679505 CAGTGAACCCGGAGACTCAA 59.320 55.000 0.73 0.00 0.00 3.02
175 176 0.469331 ACAGTGAACCCGGAGACTCA 60.469 55.000 0.73 0.00 0.00 3.41
176 177 0.244178 GACAGTGAACCCGGAGACTC 59.756 60.000 0.73 0.00 0.00 3.36
177 178 1.524863 CGACAGTGAACCCGGAGACT 61.525 60.000 0.73 0.00 0.00 3.24
178 179 1.080705 CGACAGTGAACCCGGAGAC 60.081 63.158 0.73 0.00 0.00 3.36
179 180 2.927580 GCGACAGTGAACCCGGAGA 61.928 63.158 0.73 0.00 0.00 3.71
180 181 2.432628 GCGACAGTGAACCCGGAG 60.433 66.667 0.73 0.00 0.00 4.63
181 182 4.351938 CGCGACAGTGAACCCGGA 62.352 66.667 0.73 0.00 0.00 5.14
184 185 4.980805 TGCCGCGACAGTGAACCC 62.981 66.667 8.23 0.00 0.00 4.11
185 186 1.852067 AAATGCCGCGACAGTGAACC 61.852 55.000 8.23 0.00 0.00 3.62
186 187 0.040425 AAAATGCCGCGACAGTGAAC 60.040 50.000 8.23 0.00 0.00 3.18
187 188 0.665835 AAAAATGCCGCGACAGTGAA 59.334 45.000 8.23 0.00 0.00 3.18
188 189 1.195900 GTAAAAATGCCGCGACAGTGA 59.804 47.619 8.23 0.00 0.00 3.41
189 190 1.069568 TGTAAAAATGCCGCGACAGTG 60.070 47.619 8.23 0.00 0.00 3.66
190 191 1.069500 GTGTAAAAATGCCGCGACAGT 60.069 47.619 8.23 0.00 0.00 3.55
191 192 1.069568 TGTGTAAAAATGCCGCGACAG 60.070 47.619 8.23 0.00 0.00 3.51
192 193 0.945099 TGTGTAAAAATGCCGCGACA 59.055 45.000 8.23 0.48 0.00 4.35
193 194 2.039327 TTGTGTAAAAATGCCGCGAC 57.961 45.000 8.23 0.00 0.00 5.19
194 195 2.605823 CCTTTGTGTAAAAATGCCGCGA 60.606 45.455 8.23 0.00 0.00 5.87
195 196 1.718711 CCTTTGTGTAAAAATGCCGCG 59.281 47.619 0.00 0.00 0.00 6.46
196 197 2.729360 GACCTTTGTGTAAAAATGCCGC 59.271 45.455 0.00 0.00 0.00 6.53
197 198 3.243569 TGGACCTTTGTGTAAAAATGCCG 60.244 43.478 0.00 0.00 0.00 5.69
198 199 4.329462 TGGACCTTTGTGTAAAAATGCC 57.671 40.909 0.00 0.00 0.00 4.40
199 200 5.177327 CACATGGACCTTTGTGTAAAAATGC 59.823 40.000 15.90 0.00 38.69 3.56
200 201 5.177327 GCACATGGACCTTTGTGTAAAAATG 59.823 40.000 21.62 4.78 44.01 2.32
201 202 5.070313 AGCACATGGACCTTTGTGTAAAAAT 59.930 36.000 21.62 6.32 44.01 1.82
202 203 4.404073 AGCACATGGACCTTTGTGTAAAAA 59.596 37.500 21.62 0.00 44.01 1.94
203 204 3.957497 AGCACATGGACCTTTGTGTAAAA 59.043 39.130 21.62 0.00 44.01 1.52
204 205 3.561143 AGCACATGGACCTTTGTGTAAA 58.439 40.909 21.62 0.00 44.01 2.01
205 206 3.222173 AGCACATGGACCTTTGTGTAA 57.778 42.857 21.62 0.00 44.01 2.41
206 207 2.949177 AGCACATGGACCTTTGTGTA 57.051 45.000 21.62 0.00 44.01 2.90
207 208 2.071778 AAGCACATGGACCTTTGTGT 57.928 45.000 21.62 11.14 44.01 3.72
208 209 3.125316 CAAAAGCACATGGACCTTTGTG 58.875 45.455 18.47 18.47 44.75 3.33
209 210 2.102925 CCAAAAGCACATGGACCTTTGT 59.897 45.455 0.00 0.00 39.12 2.83
210 211 2.548493 CCCAAAAGCACATGGACCTTTG 60.548 50.000 0.00 1.25 39.12 2.77
211 212 1.693606 CCCAAAAGCACATGGACCTTT 59.306 47.619 0.00 0.00 39.12 3.11
212 213 1.341080 CCCAAAAGCACATGGACCTT 58.659 50.000 0.00 0.00 39.12 3.50
213 214 0.542702 CCCCAAAAGCACATGGACCT 60.543 55.000 0.00 0.00 39.12 3.85
214 215 0.541764 TCCCCAAAAGCACATGGACC 60.542 55.000 0.00 0.00 39.12 4.46
215 216 1.337118 TTCCCCAAAAGCACATGGAC 58.663 50.000 0.00 0.00 39.12 4.02
216 217 2.323999 ATTCCCCAAAAGCACATGGA 57.676 45.000 0.00 0.00 39.12 3.41
217 218 4.252878 GTTAATTCCCCAAAAGCACATGG 58.747 43.478 0.00 0.00 36.42 3.66
218 219 4.690280 GTGTTAATTCCCCAAAAGCACATG 59.310 41.667 0.00 0.00 0.00 3.21
219 220 4.560513 CGTGTTAATTCCCCAAAAGCACAT 60.561 41.667 0.00 0.00 0.00 3.21
220 221 3.243569 CGTGTTAATTCCCCAAAAGCACA 60.244 43.478 0.00 0.00 0.00 4.57
221 222 3.243602 ACGTGTTAATTCCCCAAAAGCAC 60.244 43.478 0.00 0.00 0.00 4.40
222 223 2.959707 ACGTGTTAATTCCCCAAAAGCA 59.040 40.909 0.00 0.00 0.00 3.91
223 224 3.571571 GACGTGTTAATTCCCCAAAAGC 58.428 45.455 0.00 0.00 0.00 3.51
224 225 3.251487 ACGACGTGTTAATTCCCCAAAAG 59.749 43.478 0.00 0.00 0.00 2.27
225 226 3.212685 ACGACGTGTTAATTCCCCAAAA 58.787 40.909 0.00 0.00 0.00 2.44
226 227 2.807392 GACGACGTGTTAATTCCCCAAA 59.193 45.455 4.58 0.00 0.00 3.28
227 228 2.415776 GACGACGTGTTAATTCCCCAA 58.584 47.619 4.58 0.00 0.00 4.12
228 229 1.338011 GGACGACGTGTTAATTCCCCA 60.338 52.381 4.58 0.00 0.00 4.96
229 230 1.362768 GGACGACGTGTTAATTCCCC 58.637 55.000 4.58 0.00 0.00 4.81
230 231 1.066645 AGGGACGACGTGTTAATTCCC 60.067 52.381 4.58 7.99 42.81 3.97
231 232 2.094338 AGAGGGACGACGTGTTAATTCC 60.094 50.000 4.58 0.00 0.00 3.01
232 233 3.227810 AGAGGGACGACGTGTTAATTC 57.772 47.619 4.58 0.00 0.00 2.17
233 234 3.672767 AAGAGGGACGACGTGTTAATT 57.327 42.857 4.58 0.00 0.00 1.40
234 235 3.672767 AAAGAGGGACGACGTGTTAAT 57.327 42.857 4.58 0.00 0.00 1.40
235 236 4.037923 ACTTAAAGAGGGACGACGTGTTAA 59.962 41.667 4.58 0.07 0.00 2.01
236 237 3.569701 ACTTAAAGAGGGACGACGTGTTA 59.430 43.478 4.58 0.00 0.00 2.41
237 238 2.363359 ACTTAAAGAGGGACGACGTGTT 59.637 45.455 4.58 0.00 0.00 3.32
238 239 1.959282 ACTTAAAGAGGGACGACGTGT 59.041 47.619 4.58 0.00 0.00 4.49
239 240 2.593257 GACTTAAAGAGGGACGACGTG 58.407 52.381 4.58 0.00 0.00 4.49
240 241 1.198637 CGACTTAAAGAGGGACGACGT 59.801 52.381 0.00 0.00 0.00 4.34
241 242 1.466167 TCGACTTAAAGAGGGACGACG 59.534 52.381 0.00 0.00 0.00 5.12
242 243 3.377798 AGATCGACTTAAAGAGGGACGAC 59.622 47.826 0.00 0.00 34.46 4.34
243 244 3.618351 AGATCGACTTAAAGAGGGACGA 58.382 45.455 0.00 0.00 35.42 4.20
244 245 5.296283 TCTTAGATCGACTTAAAGAGGGACG 59.704 44.000 0.00 0.00 0.00 4.79
245 246 6.696441 TCTTAGATCGACTTAAAGAGGGAC 57.304 41.667 0.00 0.00 0.00 4.46
246 247 7.713734 TTTCTTAGATCGACTTAAAGAGGGA 57.286 36.000 0.00 0.00 28.80 4.20
247 248 8.821894 CATTTTCTTAGATCGACTTAAAGAGGG 58.178 37.037 0.00 0.00 28.80 4.30
248 249 9.372369 ACATTTTCTTAGATCGACTTAAAGAGG 57.628 33.333 0.00 0.00 28.80 3.69
290 291 6.209788 TGGATTCTTATAAACGCAGGGTTTTT 59.790 34.615 19.72 14.58 46.52 1.94
291 292 5.712917 TGGATTCTTATAAACGCAGGGTTTT 59.287 36.000 19.72 10.77 46.52 2.43
293 294 4.850680 TGGATTCTTATAAACGCAGGGTT 58.149 39.130 0.00 0.00 41.76 4.11
294 295 4.497291 TGGATTCTTATAAACGCAGGGT 57.503 40.909 0.00 0.00 0.00 4.34
295 296 4.036380 GGTTGGATTCTTATAAACGCAGGG 59.964 45.833 0.00 0.00 0.00 4.45
296 297 4.036380 GGGTTGGATTCTTATAAACGCAGG 59.964 45.833 0.00 0.00 34.78 4.85
297 298 4.260620 CGGGTTGGATTCTTATAAACGCAG 60.261 45.833 0.00 0.00 34.43 5.18
298 299 3.623960 CGGGTTGGATTCTTATAAACGCA 59.376 43.478 0.00 0.00 34.43 5.24
299 300 3.547413 GCGGGTTGGATTCTTATAAACGC 60.547 47.826 0.00 0.00 35.32 4.84
300 301 3.302870 CGCGGGTTGGATTCTTATAAACG 60.303 47.826 0.00 0.00 0.00 3.60
301 302 3.872771 TCGCGGGTTGGATTCTTATAAAC 59.127 43.478 6.13 0.00 0.00 2.01
302 303 4.139859 TCGCGGGTTGGATTCTTATAAA 57.860 40.909 6.13 0.00 0.00 1.40
303 304 3.823281 TCGCGGGTTGGATTCTTATAA 57.177 42.857 6.13 0.00 0.00 0.98
304 305 4.312443 GAATCGCGGGTTGGATTCTTATA 58.688 43.478 6.13 0.00 43.20 0.98
305 306 2.930826 ATCGCGGGTTGGATTCTTAT 57.069 45.000 6.13 0.00 0.00 1.73
306 307 2.557317 GAATCGCGGGTTGGATTCTTA 58.443 47.619 6.13 0.00 43.20 2.10
307 308 1.379527 GAATCGCGGGTTGGATTCTT 58.620 50.000 6.13 0.00 43.20 2.52
308 309 0.463833 GGAATCGCGGGTTGGATTCT 60.464 55.000 6.13 0.00 44.94 2.40
309 310 0.463833 AGGAATCGCGGGTTGGATTC 60.464 55.000 6.13 6.85 44.88 2.52
310 311 0.034477 AAGGAATCGCGGGTTGGATT 60.034 50.000 6.13 0.00 35.67 3.01
311 312 0.034477 AAAGGAATCGCGGGTTGGAT 60.034 50.000 6.13 0.00 0.00 3.41
312 313 0.250989 AAAAGGAATCGCGGGTTGGA 60.251 50.000 6.13 0.00 0.00 3.53
313 314 1.400494 CTAAAAGGAATCGCGGGTTGG 59.600 52.381 6.13 0.00 0.00 3.77
314 315 1.202143 GCTAAAAGGAATCGCGGGTTG 60.202 52.381 6.13 0.00 0.00 3.77
315 316 1.092348 GCTAAAAGGAATCGCGGGTT 58.908 50.000 6.13 0.94 0.00 4.11
316 317 0.252197 AGCTAAAAGGAATCGCGGGT 59.748 50.000 6.13 0.00 0.00 5.28
317 318 2.234300 TAGCTAAAAGGAATCGCGGG 57.766 50.000 6.13 0.00 0.00 6.13
318 319 4.058817 AGAATAGCTAAAAGGAATCGCGG 58.941 43.478 6.13 0.00 0.00 6.46
319 320 4.508124 ACAGAATAGCTAAAAGGAATCGCG 59.492 41.667 0.00 0.00 0.00 5.87
320 321 5.523916 TGACAGAATAGCTAAAAGGAATCGC 59.476 40.000 0.00 0.00 0.00 4.58
321 322 7.254590 CCTTGACAGAATAGCTAAAAGGAATCG 60.255 40.741 0.00 0.00 34.15 3.34
322 323 7.554476 ACCTTGACAGAATAGCTAAAAGGAATC 59.446 37.037 15.68 4.04 35.10 2.52
323 324 7.337942 CACCTTGACAGAATAGCTAAAAGGAAT 59.662 37.037 15.68 0.00 35.10 3.01
324 325 6.655003 CACCTTGACAGAATAGCTAAAAGGAA 59.345 38.462 15.68 0.00 35.10 3.36
325 326 6.173339 CACCTTGACAGAATAGCTAAAAGGA 58.827 40.000 15.68 0.00 35.10 3.36
326 327 5.940470 ACACCTTGACAGAATAGCTAAAAGG 59.060 40.000 0.00 5.60 36.46 3.11
327 328 6.428159 ACACACCTTGACAGAATAGCTAAAAG 59.572 38.462 0.00 0.00 0.00 2.27
328 329 6.296026 ACACACCTTGACAGAATAGCTAAAA 58.704 36.000 0.00 0.00 0.00 1.52
329 330 5.865085 ACACACCTTGACAGAATAGCTAAA 58.135 37.500 0.00 0.00 0.00 1.85
330 331 5.483685 ACACACCTTGACAGAATAGCTAA 57.516 39.130 0.00 0.00 0.00 3.09
331 332 5.715279 AGTACACACCTTGACAGAATAGCTA 59.285 40.000 0.00 0.00 0.00 3.32
334 335 7.155328 AGAAAGTACACACCTTGACAGAATAG 58.845 38.462 0.00 0.00 0.00 1.73
386 387 1.467342 ACTTTCGTTTAGCCAATCGCC 59.533 47.619 0.00 0.00 38.78 5.54
400 401 8.494016 AGATTATTCCAAAGGAAGTACTTTCG 57.506 34.615 10.02 0.00 45.48 3.46
530 531 9.343539 GGCTAGAATGAACCTCATTAAAATAGT 57.656 33.333 1.96 0.00 46.20 2.12
582 584 8.492673 TGTACTTTCATTTAGCCAACAGATAG 57.507 34.615 0.00 0.00 0.00 2.08
672 674 9.729281 AAAAGAAATACCACTAACGGAAGAATA 57.271 29.630 0.00 0.00 0.00 1.75
726 728 8.894768 AGTGGATCTTACTAAAATAGCATGAC 57.105 34.615 0.00 0.00 0.00 3.06
783 786 9.297586 CCGACGCTAAAATAAGCAGATAATATA 57.702 33.333 0.00 0.00 42.91 0.86
809 812 4.122776 ACCATGATACTGTGAGCGAAATC 58.877 43.478 0.00 0.00 0.00 2.17
876 880 4.211164 TCAAGCATGACAACTTTGTACTCG 59.789 41.667 0.00 0.00 42.43 4.18
915 919 8.331022 GTGATATATATATGTGCCAAAGAAGCG 58.669 37.037 10.03 0.00 0.00 4.68
938 942 9.586435 CTGTGAAAATCATATACTGTACTGTGA 57.414 33.333 15.01 4.69 0.00 3.58
992 996 3.650281 TGTTGATATCCATGGCTGTGT 57.350 42.857 6.96 0.00 0.00 3.72
1143 1154 5.904362 ATTCAAACTTCTGACTAATGGCC 57.096 39.130 0.00 0.00 0.00 5.36
1325 1337 2.239400 CGACCACTCCTGGCAGATATA 58.761 52.381 17.94 0.00 42.08 0.86
1336 1348 1.103803 TAGTGATCAGCGACCACTCC 58.896 55.000 8.56 0.00 41.01 3.85
1410 1432 9.121658 GCCATATACTTCTAAAAGGCTAAAACT 57.878 33.333 0.00 0.00 37.89 2.66
1495 1520 4.584325 TCAGTTGCTATTGCCAACTTTTCT 59.416 37.500 11.82 0.00 37.95 2.52
1531 1556 5.992217 AGTGAACAGAGGAAGTACATCAAAC 59.008 40.000 0.00 0.00 0.00 2.93
1543 1568 8.974060 AACAACTTATAAAAGTGAACAGAGGA 57.026 30.769 0.00 0.00 45.37 3.71
1548 1573 9.997482 GTCTGAAACAACTTATAAAAGTGAACA 57.003 29.630 0.00 0.00 45.37 3.18
1565 1590 8.034215 ACAACTCAATTTCATTTGTCTGAAACA 58.966 29.630 1.68 0.00 45.21 2.83
1569 1594 8.871862 CAAAACAACTCAATTTCATTTGTCTGA 58.128 29.630 0.00 0.00 30.14 3.27
1584 1609 3.081061 AGACAGTGTGCAAAACAACTCA 58.919 40.909 0.00 0.00 41.57 3.41
1597 1622 6.480320 GTCTTTGTAGATGTTTCAGACAGTGT 59.520 38.462 0.00 0.00 42.62 3.55
1638 1663 3.543680 TGCACAATTAGCTACTCCCTC 57.456 47.619 0.00 0.00 0.00 4.30
1642 1667 5.220739 CCTGTTGATGCACAATTAGCTACTC 60.221 44.000 0.00 0.43 40.76 2.59
1643 1668 4.637534 CCTGTTGATGCACAATTAGCTACT 59.362 41.667 0.00 0.00 40.76 2.57
1756 1781 0.798009 CTAGCAAAAATGCCCGTGCG 60.798 55.000 0.00 0.00 41.90 5.34
1761 1786 2.495669 TGCCTAACTAGCAAAAATGCCC 59.504 45.455 0.00 0.00 37.28 5.36
1762 1787 3.866883 TGCCTAACTAGCAAAAATGCC 57.133 42.857 0.00 0.00 37.28 4.40
1778 1803 9.034800 TCAAATTTCTGGTCTATATTTTTGCCT 57.965 29.630 0.00 0.00 0.00 4.75
1779 1804 9.822185 ATCAAATTTCTGGTCTATATTTTTGCC 57.178 29.630 0.00 0.00 0.00 4.52
1790 1815 9.807649 GCACAATATTTATCAAATTTCTGGTCT 57.192 29.630 0.00 0.00 32.38 3.85
1791 1816 9.034544 GGCACAATATTTATCAAATTTCTGGTC 57.965 33.333 0.00 0.00 32.38 4.02
1792 1817 8.538701 TGGCACAATATTTATCAAATTTCTGGT 58.461 29.630 0.00 0.00 31.92 4.00
1793 1818 8.945481 TGGCACAATATTTATCAAATTTCTGG 57.055 30.769 0.00 0.00 31.92 3.86
1812 1837 4.142359 ACGTTGTTGTAAAGATTTGGCACA 60.142 37.500 0.00 0.00 0.00 4.57
1813 1838 4.206200 CACGTTGTTGTAAAGATTTGGCAC 59.794 41.667 0.00 0.00 0.00 5.01
1814 1839 4.096532 TCACGTTGTTGTAAAGATTTGGCA 59.903 37.500 0.00 0.00 0.00 4.92
1815 1840 4.602995 TCACGTTGTTGTAAAGATTTGGC 58.397 39.130 0.00 0.00 0.00 4.52
1816 1841 6.262601 AGTTCACGTTGTTGTAAAGATTTGG 58.737 36.000 0.00 0.00 0.00 3.28
1817 1842 7.906010 TGTAGTTCACGTTGTTGTAAAGATTTG 59.094 33.333 0.00 0.00 0.00 2.32
1818 1843 7.976826 TGTAGTTCACGTTGTTGTAAAGATTT 58.023 30.769 0.00 0.00 0.00 2.17
1819 1844 7.542534 TGTAGTTCACGTTGTTGTAAAGATT 57.457 32.000 0.00 0.00 0.00 2.40
1820 1845 7.493320 TCTTGTAGTTCACGTTGTTGTAAAGAT 59.507 33.333 0.00 0.00 0.00 2.40
1821 1846 6.812656 TCTTGTAGTTCACGTTGTTGTAAAGA 59.187 34.615 0.00 0.00 0.00 2.52
1822 1847 6.996106 TCTTGTAGTTCACGTTGTTGTAAAG 58.004 36.000 0.00 0.00 0.00 1.85
1823 1848 6.964741 TCTTGTAGTTCACGTTGTTGTAAA 57.035 33.333 0.00 0.00 0.00 2.01
1824 1849 7.383029 CCTATCTTGTAGTTCACGTTGTTGTAA 59.617 37.037 0.00 0.00 0.00 2.41
1825 1850 6.864685 CCTATCTTGTAGTTCACGTTGTTGTA 59.135 38.462 0.00 0.00 0.00 2.41
1826 1851 5.694910 CCTATCTTGTAGTTCACGTTGTTGT 59.305 40.000 0.00 0.00 0.00 3.32
1827 1852 5.924254 TCCTATCTTGTAGTTCACGTTGTTG 59.076 40.000 0.00 0.00 0.00 3.33
1828 1853 6.092955 TCCTATCTTGTAGTTCACGTTGTT 57.907 37.500 0.00 0.00 0.00 2.83
1829 1854 5.717078 TCCTATCTTGTAGTTCACGTTGT 57.283 39.130 0.00 0.00 0.00 3.32
1830 1855 7.170998 AGTTTTCCTATCTTGTAGTTCACGTTG 59.829 37.037 0.00 0.00 0.00 4.10
1831 1856 7.215085 AGTTTTCCTATCTTGTAGTTCACGTT 58.785 34.615 0.00 0.00 0.00 3.99
1832 1857 6.756221 AGTTTTCCTATCTTGTAGTTCACGT 58.244 36.000 0.00 0.00 0.00 4.49
1833 1858 7.062371 CAGAGTTTTCCTATCTTGTAGTTCACG 59.938 40.741 0.00 0.00 0.00 4.35
1834 1859 7.332182 CCAGAGTTTTCCTATCTTGTAGTTCAC 59.668 40.741 0.00 0.00 0.00 3.18
1835 1860 7.386851 CCAGAGTTTTCCTATCTTGTAGTTCA 58.613 38.462 0.00 0.00 0.00 3.18
1922 1947 2.933260 TCTTGCAAAAAGAAAAACGGGC 59.067 40.909 0.00 0.00 0.00 6.13
1927 1952 3.938334 GCCCAGTCTTGCAAAAAGAAAAA 59.062 39.130 0.00 0.00 0.00 1.94
1932 1957 2.867975 CAAAGCCCAGTCTTGCAAAAAG 59.132 45.455 0.00 0.00 0.00 2.27
2166 2192 3.548770 ACATATCGGTTCACTCTCCGTA 58.451 45.455 3.64 0.00 45.88 4.02
2217 2243 8.161699 TGAGTTCCACTTAAAGAAATGGTAAC 57.838 34.615 0.00 0.00 33.67 2.50
2356 2382 2.026542 AGATCCGGTCTTTTTACCCACC 60.027 50.000 0.00 0.00 36.03 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.