Multiple sequence alignment - TraesCS5A01G090400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G090400 chr5A 100.000 6215 0 0 1 6215 122333786 122327572 0.000000e+00 11478.0
1 TraesCS5A01G090400 chr5A 91.860 258 21 0 5900 6157 18726608 18726351 1.650000e-95 361.0
2 TraesCS5A01G090400 chr5A 85.276 163 4 4 6073 6215 632868773 632868935 3.880000e-32 150.0
3 TraesCS5A01G090400 chr5D 95.525 4983 139 35 951 5898 115645168 115640235 0.000000e+00 7890.0
4 TraesCS5A01G090400 chr5D 98.519 540 7 1 117 655 55540231 55540770 0.000000e+00 952.0
5 TraesCS5A01G090400 chr5D 97.790 181 4 0 653 833 55540877 55541057 4.680000e-81 313.0
6 TraesCS5A01G090400 chr5D 96.111 180 7 0 5896 6075 539448519 539448340 1.690000e-75 294.0
7 TraesCS5A01G090400 chr5D 99.123 114 1 0 830 943 55541139 55541252 8.170000e-49 206.0
8 TraesCS5A01G090400 chr5D 96.000 125 5 0 1 125 55535813 55535937 2.940000e-48 204.0
9 TraesCS5A01G090400 chr5B 94.559 2610 70 15 3324 5898 127201062 127198490 0.000000e+00 3967.0
10 TraesCS5A01G090400 chr5B 95.372 2139 70 9 1193 3325 127203260 127201145 0.000000e+00 3374.0
11 TraesCS5A01G090400 chr5B 98.323 656 10 1 1 655 465263465 465264120 0.000000e+00 1149.0
12 TraesCS5A01G090400 chr5B 99.448 181 1 0 653 833 465264227 465264407 4.640000e-86 329.0
13 TraesCS5A01G090400 chr5B 98.276 116 2 0 830 945 465264489 465264604 2.940000e-48 204.0
14 TraesCS5A01G090400 chr5B 97.183 71 2 0 6145 6215 472220159 472220229 3.040000e-23 121.0
15 TraesCS5A01G090400 chr5B 96.296 54 0 1 951 1004 127203768 127203717 3.090000e-13 87.9
16 TraesCS5A01G090400 chr4A 98.323 656 10 1 1 655 732802934 732803589 0.000000e+00 1149.0
17 TraesCS5A01G090400 chr4A 98.895 181 2 0 653 833 732803696 732803876 2.160000e-84 324.0
18 TraesCS5A01G090400 chr4A 96.429 112 3 1 830 941 732803958 732804068 3.830000e-42 183.0
19 TraesCS5A01G090400 chr4A 82.482 137 21 2 6073 6206 703223569 703223433 3.940000e-22 117.0
20 TraesCS5A01G090400 chr6B 98.171 656 11 1 1 655 3744322 3744977 0.000000e+00 1144.0
21 TraesCS5A01G090400 chr6B 89.771 655 64 3 1 654 466131765 466132417 0.000000e+00 835.0
22 TraesCS5A01G090400 chr6B 91.185 329 19 4 5897 6215 710771325 710771653 7.400000e-119 438.0
23 TraesCS5A01G090400 chr6B 98.895 181 2 0 653 833 3745084 3745264 2.160000e-84 324.0
24 TraesCS5A01G090400 chr6B 97.701 174 3 1 660 833 563806982 563806810 1.310000e-76 298.0
25 TraesCS5A01G090400 chr6B 95.531 179 8 0 653 831 466132525 466132703 2.840000e-73 287.0
26 TraesCS5A01G090400 chr6B 98.291 117 2 0 830 946 563806729 563806613 8.170000e-49 206.0
27 TraesCS5A01G090400 chr6B 97.345 113 3 0 830 942 3745346 3745458 6.360000e-45 193.0
28 TraesCS5A01G090400 chr6B 88.000 100 12 0 830 929 466132787 466132886 1.090000e-22 119.0
29 TraesCS5A01G090400 chr3A 98.168 655 12 0 1 655 681405105 681405759 0.000000e+00 1144.0
30 TraesCS5A01G090400 chr3A 89.666 329 23 4 5898 6215 50742150 50741822 5.800000e-110 409.0
31 TraesCS5A01G090400 chr3A 100.000 181 0 0 653 833 681405866 681406046 9.980000e-88 335.0
32 TraesCS5A01G090400 chr3A 90.196 153 5 1 6073 6215 79332434 79332282 2.290000e-44 191.0
33 TraesCS5A01G090400 chr3A 97.321 112 3 0 832 943 681406130 681406241 2.290000e-44 191.0
34 TraesCS5A01G090400 chr2A 97.866 656 13 1 1 655 658472301 658472956 0.000000e+00 1133.0
35 TraesCS5A01G090400 chr2A 88.739 666 63 5 1 654 199792509 199793174 0.000000e+00 804.0
36 TraesCS5A01G090400 chr2A 100.000 181 0 0 653 833 658473063 658473243 9.980000e-88 335.0
37 TraesCS5A01G090400 chr2A 97.414 116 3 0 830 945 658473325 658473440 1.370000e-46 198.0
38 TraesCS5A01G090400 chr1A 98.152 487 8 1 1 486 503321557 503322043 0.000000e+00 848.0
39 TraesCS5A01G090400 chr1A 98.969 291 2 1 653 943 503322252 503322541 2.570000e-143 520.0
40 TraesCS5A01G090400 chr1A 96.262 107 4 0 549 655 503322039 503322145 6.400000e-40 176.0
41 TraesCS5A01G090400 chr1A 97.531 81 2 0 862 942 176985837 176985757 8.400000e-29 139.0
42 TraesCS5A01G090400 chr2B 90.278 576 53 3 1 575 297431730 297432303 0.000000e+00 750.0
43 TraesCS5A01G090400 chr2B 93.889 180 11 0 654 833 297433241 297433420 7.940000e-69 272.0
44 TraesCS5A01G090400 chr7D 90.451 377 32 1 278 654 528164848 528164476 1.560000e-135 494.0
45 TraesCS5A01G090400 chr7D 94.141 256 15 0 5897 6152 591850070 591850325 2.100000e-104 390.0
46 TraesCS5A01G090400 chr7D 92.070 227 18 0 428 654 125451767 125451541 2.800000e-83 320.0
47 TraesCS5A01G090400 chr7D 97.238 181 5 0 653 833 125451433 125451253 2.180000e-79 307.0
48 TraesCS5A01G090400 chr7D 81.470 313 48 9 5904 6211 178695116 178695423 1.340000e-61 248.0
49 TraesCS5A01G090400 chr7D 92.308 143 9 2 690 831 528160232 528160091 1.060000e-47 202.0
50 TraesCS5A01G090400 chr7D 91.150 113 10 0 830 942 125451171 125451059 3.000000e-33 154.0
51 TraesCS5A01G090400 chr7D 100.000 41 0 0 655 695 528164366 528164326 6.680000e-10 76.8
52 TraesCS5A01G090400 chr1B 92.664 259 18 1 5900 6157 144144067 144144325 7.610000e-99 372.0
53 TraesCS5A01G090400 chr1B 96.591 176 6 0 5900 6075 45357775 45357600 6.090000e-75 292.0
54 TraesCS5A01G090400 chr1B 98.592 71 1 0 6145 6215 144144343 144144413 6.540000e-25 126.0
55 TraesCS5A01G090400 chr4D 91.209 273 13 1 5896 6157 414042035 414041763 1.650000e-95 361.0
56 TraesCS5A01G090400 chr7B 91.787 207 17 0 448 654 566147619 566147413 7.880000e-74 289.0
57 TraesCS5A01G090400 chr7B 95.531 179 8 0 5897 6075 689666070 689666248 2.840000e-73 287.0
58 TraesCS5A01G090400 chr7B 90.608 181 17 0 653 833 566147305 566147125 2.240000e-59 241.0
59 TraesCS5A01G090400 chr7B 87.234 188 22 2 221 407 566147809 566147623 4.880000e-51 213.0
60 TraesCS5A01G090400 chr2D 93.706 143 9 0 6073 6215 451008303 451008161 1.360000e-51 215.0
61 TraesCS5A01G090400 chr1D 84.663 163 5 1 6073 6215 282134477 282134639 1.810000e-30 145.0
62 TraesCS5A01G090400 chr7A 79.147 211 26 14 6018 6215 646580435 646580640 5.060000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G090400 chr5A 122327572 122333786 6214 True 11478.000000 11478 100.000000 1 6215 1 chr5A.!!$R2 6214
1 TraesCS5A01G090400 chr5D 115640235 115645168 4933 True 7890.000000 7890 95.525000 951 5898 1 chr5D.!!$R1 4947
2 TraesCS5A01G090400 chr5D 55540231 55541252 1021 False 490.333333 952 98.477333 117 943 3 chr5D.!!$F2 826
3 TraesCS5A01G090400 chr5B 127198490 127203768 5278 True 2476.300000 3967 95.409000 951 5898 3 chr5B.!!$R1 4947
4 TraesCS5A01G090400 chr5B 465263465 465264604 1139 False 560.666667 1149 98.682333 1 945 3 chr5B.!!$F2 944
5 TraesCS5A01G090400 chr4A 732802934 732804068 1134 False 552.000000 1149 97.882333 1 941 3 chr4A.!!$F1 940
6 TraesCS5A01G090400 chr6B 3744322 3745458 1136 False 553.666667 1144 98.137000 1 942 3 chr6B.!!$F2 941
7 TraesCS5A01G090400 chr6B 466131765 466132886 1121 False 413.666667 835 91.100667 1 929 3 chr6B.!!$F3 928
8 TraesCS5A01G090400 chr3A 681405105 681406241 1136 False 556.666667 1144 98.496333 1 943 3 chr3A.!!$F1 942
9 TraesCS5A01G090400 chr2A 199792509 199793174 665 False 804.000000 804 88.739000 1 654 1 chr2A.!!$F1 653
10 TraesCS5A01G090400 chr2A 658472301 658473440 1139 False 555.333333 1133 98.426667 1 945 3 chr2A.!!$F2 944
11 TraesCS5A01G090400 chr1A 503321557 503322541 984 False 514.666667 848 97.794333 1 943 3 chr1A.!!$F1 942
12 TraesCS5A01G090400 chr2B 297431730 297433420 1690 False 511.000000 750 92.083500 1 833 2 chr2B.!!$F1 832
13 TraesCS5A01G090400 chr7D 528164326 528164848 522 True 285.400000 494 95.225500 278 695 2 chr7D.!!$R3 417
14 TraesCS5A01G090400 chr7D 125451059 125451767 708 True 260.333333 320 93.486000 428 942 3 chr7D.!!$R2 514
15 TraesCS5A01G090400 chr7B 566147125 566147809 684 True 247.666667 289 89.876333 221 833 3 chr7B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 2035 0.676782 TCCTCCCTAAGCAAAAGCGC 60.677 55.000 0.0 0.0 0.00 5.92 F
1069 2114 1.304217 TCGGTGTGTCTCTCCCCTC 60.304 63.158 0.0 0.0 0.00 4.30 F
2272 3590 0.179045 AGGAGTAATGGCGTGCATCC 60.179 55.000 0.0 0.0 0.00 3.51 F
2273 3591 1.498865 GGAGTAATGGCGTGCATCCG 61.499 60.000 0.0 0.0 0.00 4.18 F
3290 4610 2.100605 AGTTGTAGGCTTGTAGCAGC 57.899 50.000 0.0 0.0 44.75 5.25 F
4837 6268 1.777272 AGAACCAAGAGGAGCCAGTTT 59.223 47.619 0.0 0.0 38.69 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 3578 0.179059 TTATGACGGATGCACGCCAT 60.179 50.000 8.07 6.07 40.08 4.40 R
2656 3974 0.534412 CAACTTTTGGGCCACACACA 59.466 50.000 5.23 0.00 0.00 3.72 R
3887 5292 1.002134 CATCTTCCTGGCGGTGGTT 60.002 57.895 0.00 0.00 0.00 3.67 R
4081 5511 6.739331 ACTTCATATTAGAGAAGGGACCAG 57.261 41.667 7.05 0.00 44.20 4.00 R
4962 6393 0.188342 ATGGCAACTGGGTGAAAGGT 59.812 50.000 0.00 0.00 37.61 3.50 R
6073 7513 0.035820 TTCGACGGAATTCCCCAAGG 60.036 55.000 19.01 6.83 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.456988 GGGTTTTTACAGTTCGATCAGCATAG 60.457 42.308 0.00 0.00 0.00 2.23
103 108 3.170362 CTTGGCTGGAGGGGTCAA 58.830 61.111 0.00 0.00 0.00 3.18
989 2034 1.740025 CTTCCTCCCTAAGCAAAAGCG 59.260 52.381 0.00 0.00 0.00 4.68
990 2035 0.676782 TCCTCCCTAAGCAAAAGCGC 60.677 55.000 0.00 0.00 0.00 5.92
1008 2053 2.122324 TTCTCCCCCGTTCACCCA 60.122 61.111 0.00 0.00 0.00 4.51
1069 2114 1.304217 TCGGTGTGTCTCTCCCCTC 60.304 63.158 0.00 0.00 0.00 4.30
1070 2115 2.352032 CGGTGTGTCTCTCCCCTCC 61.352 68.421 0.00 0.00 0.00 4.30
1337 2650 4.722526 TTCCTGAGGAGGTTTTTGATGA 57.277 40.909 0.00 0.00 40.76 2.92
1399 2712 2.462782 GGAGGAGACCGACGACGAG 61.463 68.421 9.28 1.47 42.66 4.18
1539 2852 7.060421 GGGGTAATTTCATCTCAACCTTCATA 58.940 38.462 0.00 0.00 0.00 2.15
1557 2870 9.036980 ACCTTCATAGAAAGATGTACTAACACT 57.963 33.333 0.00 0.00 38.78 3.55
1566 2879 6.210287 AGATGTACTAACACTTAGTGGCTC 57.790 41.667 17.21 2.07 45.58 4.70
1600 2913 7.448748 TCTAGCTCAAAAATTAGGGTTTGTC 57.551 36.000 0.00 0.00 36.36 3.18
1641 2954 6.581712 ACATGTAGGCATTGTTTTTGTTTCT 58.418 32.000 0.00 0.00 31.99 2.52
1642 2955 7.721402 ACATGTAGGCATTGTTTTTGTTTCTA 58.279 30.769 0.00 0.00 31.99 2.10
1851 3166 7.512992 CATAGGGTTCTTCTCCTCATAATTGT 58.487 38.462 0.00 0.00 34.75 2.71
1952 3267 3.307674 CGCATGTTTGAGCTGCTTTTAA 58.692 40.909 2.53 0.00 33.75 1.52
1955 3270 5.107375 CGCATGTTTGAGCTGCTTTTAATTT 60.107 36.000 2.53 0.00 33.75 1.82
1994 3312 7.695480 TGCTTGCAAGTATAGTATTTTTGGA 57.305 32.000 26.55 0.00 0.00 3.53
2038 3356 7.551617 TGTTAAGTTATAAGCTAGTTGAAGGCC 59.448 37.037 0.00 0.00 0.00 5.19
2100 3418 3.809279 GGAAGTTTGGGTGCTTTCATTTG 59.191 43.478 0.00 0.00 0.00 2.32
2129 3447 5.015515 TCCATTTGTTTCATAGTGGCATCA 58.984 37.500 0.00 0.00 0.00 3.07
2145 3463 8.757982 AGTGGCATCATTAATTCATTCTTACT 57.242 30.769 0.00 0.00 0.00 2.24
2147 3465 9.241317 GTGGCATCATTAATTCATTCTTACTTG 57.759 33.333 0.00 0.00 0.00 3.16
2260 3578 3.788227 ATGTGGAAACTGCAGGAGTAA 57.212 42.857 19.93 0.00 33.09 2.24
2272 3590 0.179045 AGGAGTAATGGCGTGCATCC 60.179 55.000 0.00 0.00 0.00 3.51
2273 3591 1.498865 GGAGTAATGGCGTGCATCCG 61.499 60.000 0.00 0.00 0.00 4.18
2477 3795 3.469008 TGTAGTTGGTGTCTTGGTGAG 57.531 47.619 0.00 0.00 0.00 3.51
2610 3928 5.180117 GCTCCAGGTGCATATGTTTATACTG 59.820 44.000 8.73 5.10 0.00 2.74
2627 3945 9.699703 GTTTATACTGGATAGATCTTTGAGGAC 57.300 37.037 0.00 0.00 0.00 3.85
2656 3974 5.946377 GGTTCCTCTCAATGTAATGTTTCCT 59.054 40.000 0.00 0.00 0.00 3.36
2691 4009 5.567138 AAAGTTGTAGTGATGGCTATTGC 57.433 39.130 0.00 0.00 38.76 3.56
2788 4106 4.202461 TGAAACAACAGAGCCATCCTAAGT 60.202 41.667 0.00 0.00 0.00 2.24
2798 4116 2.811873 GCCATCCTAAGTGCGGAATCAT 60.812 50.000 0.00 0.00 33.55 2.45
2848 4166 7.015098 TCACATGTCAACTTAAAATCCAACCAT 59.985 33.333 0.00 0.00 0.00 3.55
2971 4289 3.019564 AGGTGTTGGATGCTCTTAATGC 58.980 45.455 0.00 0.00 0.00 3.56
3071 4391 4.094294 TCGCACTTCCATGTTTTATACAGC 59.906 41.667 0.00 0.00 40.83 4.40
3078 4398 5.919755 TCCATGTTTTATACAGCGTGGATA 58.080 37.500 11.44 0.00 38.12 2.59
3089 4409 3.941483 ACAGCGTGGATAAGAGGAATTTG 59.059 43.478 0.00 0.00 0.00 2.32
3093 4413 4.261801 CGTGGATAAGAGGAATTTGTGGT 58.738 43.478 0.00 0.00 0.00 4.16
3100 4420 2.641815 AGAGGAATTTGTGGTCTGAGCT 59.358 45.455 8.47 0.00 0.00 4.09
3122 4442 6.027749 GCTGTCAATATTTTACACTTTCCGG 58.972 40.000 0.00 0.00 0.00 5.14
3160 4480 7.094805 TGGTTCTGATTTTCTTGGATTTACTCG 60.095 37.037 0.00 0.00 0.00 4.18
3290 4610 2.100605 AGTTGTAGGCTTGTAGCAGC 57.899 50.000 0.00 0.00 44.75 5.25
3354 4758 2.159462 GCAATGGAACTGCAGTAGCTTC 60.159 50.000 22.01 13.83 42.74 3.86
3368 4773 9.717942 CTGCAGTAGCTTCTATTCCTATTATTT 57.282 33.333 5.25 0.00 42.74 1.40
3451 4856 9.159254 AGTTGATTATTGATAGTGTGGATAGGA 57.841 33.333 0.00 0.00 0.00 2.94
3569 4974 3.168035 ACAACTATGCCCATCCACAAA 57.832 42.857 0.00 0.00 0.00 2.83
3733 5138 9.793252 GTATCATTAGTTTCAACAAGCATCATT 57.207 29.630 0.00 0.00 0.00 2.57
3846 5251 9.737427 GAGATCATTAAAGTATTCGAGTTCTGA 57.263 33.333 0.00 0.00 0.00 3.27
3854 5259 5.956642 AGTATTCGAGTTCTGAACCTCTTC 58.043 41.667 16.48 7.11 0.00 2.87
3890 5295 9.855021 AACATGCATGAAATAAACTAGTTAACC 57.145 29.630 32.75 0.00 0.00 2.85
3962 5367 3.671716 ACATAGGTTTGGAAGGACGAAC 58.328 45.455 0.00 0.00 34.63 3.95
4005 5410 5.345202 GCTTTCTCTTGTGCTTGATTGATTG 59.655 40.000 0.00 0.00 0.00 2.67
4081 5511 7.436673 CCTCATACAGCACTAACTTGAGTAATC 59.563 40.741 0.00 0.00 0.00 1.75
4105 5536 7.592736 TCTGGTCCCTTCTCTAATATGAAGTA 58.407 38.462 0.00 0.00 38.30 2.24
4354 5785 3.970842 TCCTCTACTCTCCTCCTTTGTC 58.029 50.000 0.00 0.00 0.00 3.18
4384 5815 6.952773 TTCATTGATGATGATGCAGATTCA 57.047 33.333 0.00 0.00 44.01 2.57
4436 5867 9.965824 TGGAAAAAGTTATTGAGAAAAGTGATC 57.034 29.630 0.00 0.00 0.00 2.92
4471 5902 7.806960 CAGAAAGCAGAAGAAAGGTATTGAAAG 59.193 37.037 0.00 0.00 0.00 2.62
4480 5911 7.288810 AGAAAGGTATTGAAAGTCATTTGCA 57.711 32.000 0.00 0.00 0.00 4.08
4553 5984 7.276878 TGTCATTTTGATATGCAATTGCTTGAG 59.723 33.333 29.37 9.63 42.66 3.02
4555 5986 8.035984 TCATTTTGATATGCAATTGCTTGAGAA 58.964 29.630 29.37 14.62 42.66 2.87
4632 6063 8.574251 TTTTTCACTTTAAGCAGGCTATATGA 57.426 30.769 0.00 0.00 0.00 2.15
4741 6172 9.970395 TTGATAATCATGGATTGTAATTTCTGC 57.030 29.630 1.86 0.00 33.95 4.26
4767 6198 3.056607 GTGGTGTGCTGATTATGGCTTTT 60.057 43.478 0.00 0.00 0.00 2.27
4837 6268 1.777272 AGAACCAAGAGGAGCCAGTTT 59.223 47.619 0.00 0.00 38.69 2.66
4935 6366 3.172919 GCTCTTGCTTCGCCAGAC 58.827 61.111 0.00 0.00 36.03 3.51
4954 6385 3.446161 AGACAGTTGTATACCTTAGCGCA 59.554 43.478 11.47 0.00 0.00 6.09
4962 6393 3.536956 ATACCTTAGCGCAAGTTGCTA 57.463 42.857 24.61 9.35 42.25 3.49
5065 6496 0.803380 GGTTAGTATGCGCGTCGGTT 60.803 55.000 4.79 0.00 0.00 4.44
5180 6611 1.840635 GATTGGGAGGCCTAGTGACTT 59.159 52.381 4.42 0.00 0.00 3.01
5239 6670 3.820557 TGCCTATTCATTCTAGGTTGGC 58.179 45.455 0.00 0.00 38.42 4.52
5252 6683 3.137446 AGGTTGGCTGATCATATGCTC 57.863 47.619 0.00 0.00 0.00 4.26
5256 6687 3.851458 TGGCTGATCATATGCTCTGTT 57.149 42.857 13.02 0.00 0.00 3.16
5257 6688 3.736720 TGGCTGATCATATGCTCTGTTC 58.263 45.455 13.02 7.98 0.00 3.18
5258 6689 3.390311 TGGCTGATCATATGCTCTGTTCT 59.610 43.478 13.02 0.00 0.00 3.01
5269 6700 1.414550 GCTCTGTTCTACCCTCCATCC 59.585 57.143 0.00 0.00 0.00 3.51
5279 6710 0.466922 CCCTCCATCCTCATTGGTGC 60.467 60.000 0.00 0.00 35.64 5.01
5400 6831 5.860941 TTTTCCAAGCCATGTGTAGAAAA 57.139 34.783 0.00 0.00 31.37 2.29
5455 6886 9.842775 TTTTCATTCAGCTTAGTCTGATGATAT 57.157 29.630 7.07 0.00 42.12 1.63
5500 6931 2.885113 GATTTTGGGAGCCGTGGC 59.115 61.111 1.67 1.67 42.33 5.01
5501 6932 2.679996 ATTTTGGGAGCCGTGGCC 60.680 61.111 7.39 0.00 43.17 5.36
5502 6933 4.986708 TTTTGGGAGCCGTGGCCC 62.987 66.667 7.39 8.48 44.93 5.80
5553 6985 6.857777 TTGGCTCTAGACTCGTATAGTAAC 57.142 41.667 0.00 0.00 39.07 2.50
5557 6989 5.762218 GCTCTAGACTCGTATAGTAACCCAA 59.238 44.000 0.00 0.00 39.07 4.12
5566 6999 6.194235 TCGTATAGTAACCCAACCTTCCTTA 58.806 40.000 0.00 0.00 0.00 2.69
5721 7158 1.765904 TGTGGTGAGGAAGTGCTTACA 59.234 47.619 0.00 0.00 0.00 2.41
5730 7167 6.818644 GTGAGGAAGTGCTTACATCTCAATTA 59.181 38.462 0.00 0.00 32.59 1.40
5898 7338 4.948341 TCACTAGCTTTTCACACACCTA 57.052 40.909 0.00 0.00 0.00 3.08
5899 7339 5.284861 TCACTAGCTTTTCACACACCTAA 57.715 39.130 0.00 0.00 0.00 2.69
5900 7340 5.297547 TCACTAGCTTTTCACACACCTAAG 58.702 41.667 0.00 0.00 0.00 2.18
5901 7341 5.069914 TCACTAGCTTTTCACACACCTAAGA 59.930 40.000 0.00 0.00 0.00 2.10
5902 7342 5.758296 CACTAGCTTTTCACACACCTAAGAA 59.242 40.000 0.00 0.00 0.00 2.52
5903 7343 5.758784 ACTAGCTTTTCACACACCTAAGAAC 59.241 40.000 0.00 0.00 0.00 3.01
5904 7344 4.523083 AGCTTTTCACACACCTAAGAACA 58.477 39.130 0.00 0.00 0.00 3.18
5905 7345 5.133221 AGCTTTTCACACACCTAAGAACAT 58.867 37.500 0.00 0.00 0.00 2.71
5906 7346 5.239525 AGCTTTTCACACACCTAAGAACATC 59.760 40.000 0.00 0.00 0.00 3.06
5907 7347 5.239525 GCTTTTCACACACCTAAGAACATCT 59.760 40.000 0.00 0.00 0.00 2.90
5908 7348 6.566753 GCTTTTCACACACCTAAGAACATCTC 60.567 42.308 0.00 0.00 0.00 2.75
5909 7349 4.537135 TCACACACCTAAGAACATCTCC 57.463 45.455 0.00 0.00 0.00 3.71
5910 7350 3.901222 TCACACACCTAAGAACATCTCCA 59.099 43.478 0.00 0.00 0.00 3.86
5911 7351 4.346709 TCACACACCTAAGAACATCTCCAA 59.653 41.667 0.00 0.00 0.00 3.53
5912 7352 5.013079 TCACACACCTAAGAACATCTCCAAT 59.987 40.000 0.00 0.00 0.00 3.16
5913 7353 6.212589 TCACACACCTAAGAACATCTCCAATA 59.787 38.462 0.00 0.00 0.00 1.90
5914 7354 6.536582 CACACACCTAAGAACATCTCCAATAG 59.463 42.308 0.00 0.00 0.00 1.73
5915 7355 6.440647 ACACACCTAAGAACATCTCCAATAGA 59.559 38.462 0.00 0.00 39.02 1.98
5916 7356 7.126421 ACACACCTAAGAACATCTCCAATAGAT 59.874 37.037 0.00 0.00 46.36 1.98
5932 7372 6.035843 CCAATAGATGGTCCAAATTTTGACG 58.964 40.000 14.31 1.06 44.85 4.35
5933 7373 5.835113 ATAGATGGTCCAAATTTTGACGG 57.165 39.130 14.31 1.67 0.00 4.79
5934 7374 3.496331 AGATGGTCCAAATTTTGACGGT 58.504 40.909 14.31 6.99 0.00 4.83
5935 7375 3.506067 AGATGGTCCAAATTTTGACGGTC 59.494 43.478 14.31 13.77 0.00 4.79
5936 7376 1.957877 TGGTCCAAATTTTGACGGTCC 59.042 47.619 14.31 8.45 0.00 4.46
5937 7377 1.957877 GGTCCAAATTTTGACGGTCCA 59.042 47.619 14.31 0.00 0.00 4.02
5938 7378 2.362717 GGTCCAAATTTTGACGGTCCAA 59.637 45.455 14.31 0.00 0.00 3.53
5939 7379 3.181474 GGTCCAAATTTTGACGGTCCAAA 60.181 43.478 14.31 9.48 34.56 3.28
5940 7380 4.434520 GTCCAAATTTTGACGGTCCAAAA 58.565 39.130 10.72 13.64 46.18 2.44
5945 7385 2.257691 TTTGACGGTCCAAAATCGGA 57.742 45.000 5.55 0.00 33.56 4.55
5946 7386 1.803334 TTGACGGTCCAAAATCGGAG 58.197 50.000 5.55 0.00 35.10 4.63
5947 7387 0.970640 TGACGGTCCAAAATCGGAGA 59.029 50.000 5.55 0.00 45.75 3.71
5948 7388 1.553248 TGACGGTCCAAAATCGGAGAT 59.447 47.619 5.55 0.00 45.12 2.75
5949 7389 1.933853 GACGGTCCAAAATCGGAGATG 59.066 52.381 0.00 0.00 45.12 2.90
5950 7390 1.278127 ACGGTCCAAAATCGGAGATGT 59.722 47.619 0.00 0.00 45.12 3.06
5951 7391 2.498481 ACGGTCCAAAATCGGAGATGTA 59.502 45.455 0.00 0.00 45.12 2.29
5952 7392 3.055675 ACGGTCCAAAATCGGAGATGTAA 60.056 43.478 0.00 0.00 45.12 2.41
5953 7393 3.936453 CGGTCCAAAATCGGAGATGTAAA 59.064 43.478 0.00 0.00 45.12 2.01
5954 7394 4.574828 CGGTCCAAAATCGGAGATGTAAAT 59.425 41.667 0.00 0.00 45.12 1.40
5955 7395 5.065988 CGGTCCAAAATCGGAGATGTAAATT 59.934 40.000 0.00 0.00 45.12 1.82
5956 7396 6.404293 CGGTCCAAAATCGGAGATGTAAATTT 60.404 38.462 0.00 0.00 45.12 1.82
5957 7397 7.320399 GGTCCAAAATCGGAGATGTAAATTTT 58.680 34.615 0.00 0.00 45.12 1.82
5958 7398 7.275560 GGTCCAAAATCGGAGATGTAAATTTTG 59.724 37.037 0.00 10.41 45.12 2.44
5961 7401 8.173321 CAAAATCGGAGATGTAAATTTTGGAC 57.827 34.615 0.00 0.00 45.12 4.02
5962 7402 6.451064 AATCGGAGATGTAAATTTTGGACC 57.549 37.500 0.00 0.00 45.12 4.46
5963 7403 3.936453 TCGGAGATGTAAATTTTGGACCG 59.064 43.478 0.00 0.00 38.31 4.79
5964 7404 3.486875 CGGAGATGTAAATTTTGGACCGC 60.487 47.826 0.00 0.00 0.00 5.68
5965 7405 3.181490 GGAGATGTAAATTTTGGACCGCC 60.181 47.826 0.00 0.00 0.00 6.13
5966 7406 3.426615 AGATGTAAATTTTGGACCGCCA 58.573 40.909 0.00 0.00 44.17 5.69
5974 7414 3.124686 TGGACCGCCAAAAAGTGC 58.875 55.556 0.00 0.00 42.49 4.40
5980 7420 3.777397 CGCCAAAAAGTGCGTTTTG 57.223 47.368 13.62 13.62 45.43 2.44
5984 7424 2.996691 CAAAAAGTGCGTTTTGGAGC 57.003 45.000 13.02 0.00 42.33 4.70
5985 7425 2.539476 CAAAAAGTGCGTTTTGGAGCT 58.461 42.857 13.02 0.00 42.33 4.09
5986 7426 2.492019 AAAAGTGCGTTTTGGAGCTC 57.508 45.000 4.71 4.71 36.96 4.09
5987 7427 0.668535 AAAGTGCGTTTTGGAGCTCC 59.331 50.000 26.78 26.78 0.00 4.70
5988 7428 1.507141 AAGTGCGTTTTGGAGCTCCG 61.507 55.000 27.43 15.91 39.43 4.63
5989 7429 1.959226 GTGCGTTTTGGAGCTCCGA 60.959 57.895 27.43 23.72 39.43 4.55
5990 7430 1.227704 TGCGTTTTGGAGCTCCGAA 60.228 52.632 28.68 28.68 39.43 4.30
5991 7431 0.816018 TGCGTTTTGGAGCTCCGAAA 60.816 50.000 35.12 35.12 44.84 3.46
6026 7466 5.180271 CCAAAAGATGGTCCAAATTCATGG 58.820 41.667 0.00 3.20 44.85 3.66
6027 7467 5.280113 CCAAAAGATGGTCCAAATTCATGGT 60.280 40.000 0.00 0.00 44.85 3.55
6028 7468 5.665916 AAAGATGGTCCAAATTCATGGTC 57.334 39.130 0.00 0.00 41.46 4.02
6029 7469 3.635591 AGATGGTCCAAATTCATGGTCC 58.364 45.455 0.00 5.71 45.54 4.46
6033 7473 4.615588 GGTCCAAATTCATGGTCCAAAA 57.384 40.909 0.00 0.00 44.93 2.44
6034 7474 4.568956 GGTCCAAATTCATGGTCCAAAAG 58.431 43.478 0.00 0.00 44.93 2.27
6035 7475 4.283212 GGTCCAAATTCATGGTCCAAAAGA 59.717 41.667 0.00 0.00 44.93 2.52
6036 7476 5.473039 GTCCAAATTCATGGTCCAAAAGAG 58.527 41.667 0.00 0.00 41.46 2.85
6037 7477 4.021192 TCCAAATTCATGGTCCAAAAGAGC 60.021 41.667 0.00 0.00 41.46 4.09
6044 7484 1.981256 GGTCCAAAAGAGCAACTCCA 58.019 50.000 0.00 0.00 42.81 3.86
6045 7485 2.306847 GGTCCAAAAGAGCAACTCCAA 58.693 47.619 0.00 0.00 42.81 3.53
6046 7486 2.893489 GGTCCAAAAGAGCAACTCCAAT 59.107 45.455 0.00 0.00 42.81 3.16
6047 7487 4.079253 GGTCCAAAAGAGCAACTCCAATA 58.921 43.478 0.00 0.00 42.81 1.90
6048 7488 4.156739 GGTCCAAAAGAGCAACTCCAATAG 59.843 45.833 0.00 0.00 42.81 1.73
6049 7489 4.156739 GTCCAAAAGAGCAACTCCAATAGG 59.843 45.833 0.00 0.00 0.00 2.57
6050 7490 4.082125 CCAAAAGAGCAACTCCAATAGGT 58.918 43.478 0.00 0.00 35.89 3.08
6051 7491 4.082571 CCAAAAGAGCAACTCCAATAGGTG 60.083 45.833 0.00 0.00 46.55 4.00
6064 7504 5.266733 CCAATAGGTGGTCCAAATTCATG 57.733 43.478 0.00 0.00 43.20 3.07
6065 7505 4.099881 CCAATAGGTGGTCCAAATTCATGG 59.900 45.833 0.00 0.00 43.20 3.66
6066 7506 2.999185 AGGTGGTCCAAATTCATGGT 57.001 45.000 0.00 0.00 41.46 3.55
6067 7507 2.807676 AGGTGGTCCAAATTCATGGTC 58.192 47.619 0.00 0.00 41.46 4.02
6068 7508 1.824852 GGTGGTCCAAATTCATGGTCC 59.175 52.381 0.00 5.71 45.54 4.46
6072 7512 4.615588 GGTCCAAATTCATGGTCCAAAA 57.384 40.909 0.00 0.00 44.93 2.44
6073 7513 4.314961 GGTCCAAATTCATGGTCCAAAAC 58.685 43.478 0.00 0.00 44.93 2.43
6087 7527 2.741759 CAAAACCTTGGGGAATTCCG 57.258 50.000 18.30 6.59 36.71 4.30
6088 7528 1.967779 CAAAACCTTGGGGAATTCCGT 59.032 47.619 18.30 7.25 36.71 4.69
6089 7529 1.919240 AAACCTTGGGGAATTCCGTC 58.081 50.000 18.30 13.08 36.71 4.79
6090 7530 0.322187 AACCTTGGGGAATTCCGTCG 60.322 55.000 18.30 6.57 36.71 5.12
6091 7531 1.196104 ACCTTGGGGAATTCCGTCGA 61.196 55.000 18.30 11.45 36.71 4.20
6092 7532 0.035820 CCTTGGGGAATTCCGTCGAA 60.036 55.000 18.30 8.02 36.71 3.71
6093 7533 1.084289 CTTGGGGAATTCCGTCGAAC 58.916 55.000 18.30 3.07 36.71 3.95
6094 7534 0.397187 TTGGGGAATTCCGTCGAACA 59.603 50.000 18.30 7.34 36.71 3.18
6095 7535 0.320946 TGGGGAATTCCGTCGAACAC 60.321 55.000 18.30 1.59 36.71 3.32
6096 7536 1.022982 GGGGAATTCCGTCGAACACC 61.023 60.000 18.30 7.35 36.71 4.16
6097 7537 0.036671 GGGAATTCCGTCGAACACCT 60.037 55.000 18.30 0.00 36.71 4.00
6098 7538 1.609841 GGGAATTCCGTCGAACACCTT 60.610 52.381 18.30 0.00 36.71 3.50
6099 7539 1.463444 GGAATTCCGTCGAACACCTTG 59.537 52.381 9.17 0.00 0.00 3.61
6100 7540 2.140717 GAATTCCGTCGAACACCTTGT 58.859 47.619 0.00 0.00 0.00 3.16
6101 7541 1.508632 ATTCCGTCGAACACCTTGTG 58.491 50.000 0.00 0.00 39.75 3.33
6102 7542 1.155424 TTCCGTCGAACACCTTGTGC 61.155 55.000 0.00 0.00 36.98 4.57
6106 7546 3.636043 CGAACACCTTGTGCGCGT 61.636 61.111 8.43 0.00 43.10 6.01
6107 7547 2.052237 GAACACCTTGTGCGCGTG 60.052 61.111 8.43 10.30 36.98 5.34
6108 7548 3.521308 GAACACCTTGTGCGCGTGG 62.521 63.158 8.43 10.88 36.98 4.94
6109 7549 4.849310 ACACCTTGTGCGCGTGGT 62.849 61.111 8.43 11.46 36.98 4.16
6110 7550 4.312231 CACCTTGTGCGCGTGGTG 62.312 66.667 21.41 21.41 42.98 4.17
6113 7553 3.276091 CTTGTGCGCGTGGTGGAA 61.276 61.111 8.43 0.00 0.00 3.53
6114 7554 3.240606 CTTGTGCGCGTGGTGGAAG 62.241 63.158 8.43 0.00 0.00 3.46
6115 7555 3.741830 TTGTGCGCGTGGTGGAAGA 62.742 57.895 8.43 0.00 0.00 2.87
6116 7556 2.970324 GTGCGCGTGGTGGAAGAA 60.970 61.111 8.43 0.00 0.00 2.52
6117 7557 2.664851 TGCGCGTGGTGGAAGAAG 60.665 61.111 8.43 0.00 0.00 2.85
6118 7558 2.357034 GCGCGTGGTGGAAGAAGA 60.357 61.111 8.43 0.00 0.00 2.87
6119 7559 1.741770 GCGCGTGGTGGAAGAAGAT 60.742 57.895 8.43 0.00 0.00 2.40
6120 7560 1.970917 GCGCGTGGTGGAAGAAGATG 61.971 60.000 8.43 0.00 0.00 2.90
6121 7561 1.361668 CGCGTGGTGGAAGAAGATGG 61.362 60.000 0.00 0.00 0.00 3.51
6122 7562 1.648467 GCGTGGTGGAAGAAGATGGC 61.648 60.000 0.00 0.00 0.00 4.40
6123 7563 1.026718 CGTGGTGGAAGAAGATGGCC 61.027 60.000 0.00 0.00 0.00 5.36
6124 7564 1.026718 GTGGTGGAAGAAGATGGCCG 61.027 60.000 0.00 0.00 0.00 6.13
6125 7565 2.115291 GGTGGAAGAAGATGGCCGC 61.115 63.158 0.00 0.00 0.00 6.53
6126 7566 2.115291 GTGGAAGAAGATGGCCGCC 61.115 63.158 1.04 1.04 0.00 6.13
6127 7567 2.897350 GGAAGAAGATGGCCGCCG 60.897 66.667 4.58 0.00 0.00 6.46
6128 7568 2.897350 GAAGAAGATGGCCGCCGG 60.897 66.667 4.58 0.00 0.00 6.13
6129 7569 3.682292 GAAGAAGATGGCCGCCGGT 62.682 63.158 4.45 0.00 0.00 5.28
6130 7570 3.268103 AAGAAGATGGCCGCCGGTT 62.268 57.895 4.45 0.00 0.00 4.44
6131 7571 3.508840 GAAGATGGCCGCCGGTTG 61.509 66.667 4.45 0.00 0.00 3.77
6134 7574 4.875713 GATGGCCGCCGGTTGGAT 62.876 66.667 17.83 4.19 37.49 3.41
6135 7575 4.440829 ATGGCCGCCGGTTGGATT 62.441 61.111 17.83 0.00 37.49 3.01
6140 7580 3.814268 CGCCGGTTGGATTGGCTG 61.814 66.667 1.90 0.00 46.67 4.85
6141 7581 2.676471 GCCGGTTGGATTGGCTGT 60.676 61.111 1.90 0.00 45.40 4.40
6142 7582 2.275380 GCCGGTTGGATTGGCTGTT 61.275 57.895 1.90 0.00 45.40 3.16
6143 7583 1.586028 CCGGTTGGATTGGCTGTTG 59.414 57.895 0.00 0.00 37.49 3.33
6144 7584 1.080569 CGGTTGGATTGGCTGTTGC 60.081 57.895 0.00 0.00 38.76 4.17
6145 7585 1.080569 GGTTGGATTGGCTGTTGCG 60.081 57.895 0.00 0.00 40.82 4.85
6146 7586 1.080569 GTTGGATTGGCTGTTGCGG 60.081 57.895 0.00 0.00 40.82 5.69
6147 7587 1.228398 TTGGATTGGCTGTTGCGGA 60.228 52.632 0.00 0.00 40.82 5.54
6148 7588 1.523154 TTGGATTGGCTGTTGCGGAC 61.523 55.000 0.00 0.00 40.82 4.79
6149 7589 2.480555 GATTGGCTGTTGCGGACG 59.519 61.111 0.00 0.00 40.82 4.79
6150 7590 3.039202 GATTGGCTGTTGCGGACGG 62.039 63.158 0.00 0.00 40.82 4.79
6162 7602 4.517815 GGACGGCGGCGGTGATAA 62.518 66.667 35.05 0.00 0.00 1.75
6163 7603 2.960129 GACGGCGGCGGTGATAAG 60.960 66.667 35.05 5.43 0.00 1.73
6164 7604 3.420214 GACGGCGGCGGTGATAAGA 62.420 63.158 35.05 0.00 0.00 2.10
6165 7605 2.202824 CGGCGGCGGTGATAAGAA 60.203 61.111 25.36 0.00 0.00 2.52
6166 7606 1.812093 CGGCGGCGGTGATAAGAAA 60.812 57.895 25.36 0.00 0.00 2.52
6167 7607 1.157870 CGGCGGCGGTGATAAGAAAT 61.158 55.000 25.36 0.00 0.00 2.17
6168 7608 0.307760 GGCGGCGGTGATAAGAAATG 59.692 55.000 9.78 0.00 0.00 2.32
6169 7609 1.295792 GCGGCGGTGATAAGAAATGA 58.704 50.000 9.78 0.00 0.00 2.57
6170 7610 1.261619 GCGGCGGTGATAAGAAATGAG 59.738 52.381 9.78 0.00 0.00 2.90
6171 7611 1.867233 CGGCGGTGATAAGAAATGAGG 59.133 52.381 0.00 0.00 0.00 3.86
6172 7612 2.741878 CGGCGGTGATAAGAAATGAGGT 60.742 50.000 0.00 0.00 0.00 3.85
6173 7613 3.491964 CGGCGGTGATAAGAAATGAGGTA 60.492 47.826 0.00 0.00 0.00 3.08
6174 7614 4.058817 GGCGGTGATAAGAAATGAGGTAG 58.941 47.826 0.00 0.00 0.00 3.18
6175 7615 4.058817 GCGGTGATAAGAAATGAGGTAGG 58.941 47.826 0.00 0.00 0.00 3.18
6176 7616 4.202223 GCGGTGATAAGAAATGAGGTAGGA 60.202 45.833 0.00 0.00 0.00 2.94
6177 7617 5.533482 CGGTGATAAGAAATGAGGTAGGAG 58.467 45.833 0.00 0.00 0.00 3.69
6178 7618 5.509840 CGGTGATAAGAAATGAGGTAGGAGG 60.510 48.000 0.00 0.00 0.00 4.30
6179 7619 5.301555 GTGATAAGAAATGAGGTAGGAGGC 58.698 45.833 0.00 0.00 0.00 4.70
6180 7620 4.348168 TGATAAGAAATGAGGTAGGAGGCC 59.652 45.833 0.00 0.00 0.00 5.19
6181 7621 1.123928 AGAAATGAGGTAGGAGGCCG 58.876 55.000 0.00 0.00 0.00 6.13
6182 7622 1.120530 GAAATGAGGTAGGAGGCCGA 58.879 55.000 0.00 0.00 0.00 5.54
6183 7623 0.831307 AAATGAGGTAGGAGGCCGAC 59.169 55.000 0.00 0.00 0.00 4.79
6187 7627 2.901042 GGTAGGAGGCCGACCAAG 59.099 66.667 20.82 0.00 46.42 3.61
6188 7628 1.684734 GGTAGGAGGCCGACCAAGA 60.685 63.158 20.82 6.12 46.42 3.02
6189 7629 1.677637 GGTAGGAGGCCGACCAAGAG 61.678 65.000 20.82 0.00 46.42 2.85
6190 7630 1.381327 TAGGAGGCCGACCAAGAGG 60.381 63.158 20.82 0.00 39.06 3.69
6191 7631 1.870941 TAGGAGGCCGACCAAGAGGA 61.871 60.000 20.82 0.50 39.06 3.71
6192 7632 2.726351 GGAGGCCGACCAAGAGGAG 61.726 68.421 15.42 0.00 39.06 3.69
6193 7633 3.378399 GAGGCCGACCAAGAGGAGC 62.378 68.421 0.00 0.00 39.06 4.70
6194 7634 3.394836 GGCCGACCAAGAGGAGCT 61.395 66.667 0.00 0.00 38.69 4.09
6195 7635 2.185608 GCCGACCAAGAGGAGCTC 59.814 66.667 4.71 4.71 38.69 4.09
6196 7636 2.492090 CCGACCAAGAGGAGCTCG 59.508 66.667 7.83 0.00 38.69 5.03
6197 7637 2.046864 CCGACCAAGAGGAGCTCGA 61.047 63.158 7.83 0.00 33.99 4.04
6198 7638 1.137825 CGACCAAGAGGAGCTCGAC 59.862 63.158 7.83 4.10 33.99 4.20
6199 7639 1.137825 GACCAAGAGGAGCTCGACG 59.862 63.158 7.83 0.00 38.69 5.12
6200 7640 2.272918 GACCAAGAGGAGCTCGACGG 62.273 65.000 7.83 6.21 38.69 4.79
6201 7641 2.492090 CAAGAGGAGCTCGACGGG 59.508 66.667 7.83 0.00 35.36 5.28
6202 7642 3.453679 AAGAGGAGCTCGACGGGC 61.454 66.667 13.00 13.00 35.36 6.13
6213 7653 3.818787 GACGGGCGGCGAAGACTA 61.819 66.667 12.98 0.00 0.00 2.59
6214 7654 3.753070 GACGGGCGGCGAAGACTAG 62.753 68.421 12.98 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 108 4.452455 CCTTTTTGTATCAGACGAAGCAGT 59.548 41.667 0.00 0.00 32.78 4.40
510 523 6.888105 TGAAGCAATGAGTAGATAATGGACA 58.112 36.000 0.00 0.00 0.00 4.02
945 1990 2.027285 GGGGTGGCTATGTTGCATTTTT 60.027 45.455 0.00 0.00 34.04 1.94
946 1991 1.554617 GGGGTGGCTATGTTGCATTTT 59.445 47.619 0.00 0.00 34.04 1.82
947 1992 1.194218 GGGGTGGCTATGTTGCATTT 58.806 50.000 0.00 0.00 34.04 2.32
948 1993 0.336048 AGGGGTGGCTATGTTGCATT 59.664 50.000 0.00 0.00 34.04 3.56
949 1994 0.106519 GAGGGGTGGCTATGTTGCAT 60.107 55.000 0.00 0.00 34.04 3.96
989 2034 2.046217 GGTGAACGGGGGAGAAGC 60.046 66.667 0.00 0.00 0.00 3.86
990 2035 1.774894 TTGGGTGAACGGGGGAGAAG 61.775 60.000 0.00 0.00 0.00 2.85
1008 2053 1.916181 AGTGTGGGTGGCTAGCTATTT 59.084 47.619 15.72 0.00 0.00 1.40
1337 2650 1.484038 TCTGCCAAAGCACAAAACCT 58.516 45.000 0.00 0.00 46.52 3.50
1539 2852 7.038941 AGCCACTAAGTGTTAGTACATCTTTCT 60.039 37.037 0.00 0.00 44.32 2.52
1557 2870 1.617018 ATGCGCCTGAGAGCCACTAA 61.617 55.000 4.18 0.00 38.15 2.24
1600 2913 7.464178 GCCTACATGTTACACAAGAGATTAACG 60.464 40.741 2.30 0.00 0.00 3.18
1633 2946 7.664552 TTCCCGGAGACTATATAGAAACAAA 57.335 36.000 16.79 0.00 0.00 2.83
1641 2954 4.466370 CAGGCATTTCCCGGAGACTATATA 59.534 45.833 0.73 0.00 34.51 0.86
1642 2955 3.261897 CAGGCATTTCCCGGAGACTATAT 59.738 47.826 0.73 0.00 34.51 0.86
1859 3174 7.398024 AGGAAGATTAAGCACATTTCTACACT 58.602 34.615 0.00 0.00 0.00 3.55
1860 3175 7.617041 AGGAAGATTAAGCACATTTCTACAC 57.383 36.000 0.00 0.00 0.00 2.90
1952 3267 5.859205 AAGCAAACCTTGAGAGTGAAAAT 57.141 34.783 0.00 0.00 30.99 1.82
1994 3312 3.708563 ACACGCAAGCAACTTAAACAT 57.291 38.095 0.00 0.00 45.62 2.71
2052 3370 4.218417 GCAGAAGTAGAAAAATGAAGCCCA 59.782 41.667 0.00 0.00 0.00 5.36
2145 3463 9.631257 TTGGATCTTCTAATGCATTCTTATCAA 57.369 29.630 16.86 8.79 0.00 2.57
2147 3465 9.282569 AGTTGGATCTTCTAATGCATTCTTATC 57.717 33.333 16.86 12.24 0.00 1.75
2249 3567 1.709147 GCACGCCATTACTCCTGCAG 61.709 60.000 6.78 6.78 0.00 4.41
2260 3578 0.179059 TTATGACGGATGCACGCCAT 60.179 50.000 8.07 6.07 40.08 4.40
2461 3779 3.126001 TCATCTCACCAAGACACCAAC 57.874 47.619 0.00 0.00 36.65 3.77
2477 3795 7.228108 TCAACCAATCAGAGCATAGAATTCATC 59.772 37.037 8.44 0.00 0.00 2.92
2610 3928 4.218852 CCCTACGTCCTCAAAGATCTATCC 59.781 50.000 0.00 0.00 0.00 2.59
2627 3945 4.730949 TTACATTGAGAGGAACCCTACG 57.269 45.455 0.00 0.00 31.76 3.51
2656 3974 0.534412 CAACTTTTGGGCCACACACA 59.466 50.000 5.23 0.00 0.00 3.72
2717 4035 3.367630 GGCATTTGCAAACAATAGAACCG 59.632 43.478 15.41 0.00 44.36 4.44
2788 4106 7.148423 GCAATATCATGTAACTATGATTCCGCA 60.148 37.037 6.56 0.00 43.41 5.69
2798 4116 9.947433 TGATGATGATGCAATATCATGTAACTA 57.053 29.630 25.03 8.70 42.43 2.24
2923 4241 9.513906 TTTGTAACTAGATTTGATTGTGATCCA 57.486 29.630 0.00 0.00 0.00 3.41
3006 4326 9.203421 CACTATTTAGTCTTGATGTTGTACACA 57.797 33.333 0.00 0.00 35.30 3.72
3049 4369 4.342772 GCTGTATAAAACATGGAAGTGCG 58.657 43.478 0.00 0.00 37.50 5.34
3071 4391 4.261801 ACCACAAATTCCTCTTATCCACG 58.738 43.478 0.00 0.00 0.00 4.94
3078 4398 3.073650 AGCTCAGACCACAAATTCCTCTT 59.926 43.478 0.00 0.00 0.00 2.85
3089 4409 5.886960 AAAATATTGACAGCTCAGACCAC 57.113 39.130 0.00 0.00 0.00 4.16
3093 4413 8.621532 AAAGTGTAAAATATTGACAGCTCAGA 57.378 30.769 4.15 0.00 0.00 3.27
3100 4420 7.931578 ATCCGGAAAGTGTAAAATATTGACA 57.068 32.000 9.01 0.00 0.00 3.58
3122 4442 9.660180 AGAAAATCAGAACCACTAGACTTAATC 57.340 33.333 0.00 0.00 0.00 1.75
3451 4856 9.450807 GCAAGCGAAGTGATAAAATACATAAAT 57.549 29.630 0.00 0.00 0.00 1.40
3569 4974 8.261492 GACAAAACTGATCATGTCTGACTTAT 57.739 34.615 16.48 0.00 39.21 1.73
3838 5243 6.436843 TTTTGTTGAAGAGGTTCAGAACTC 57.563 37.500 13.13 8.57 43.66 3.01
3846 5251 5.754890 GCATGTTGATTTTGTTGAAGAGGTT 59.245 36.000 0.00 0.00 0.00 3.50
3854 5259 9.880064 TTTATTTCATGCATGTTGATTTTGTTG 57.120 25.926 25.43 0.00 0.00 3.33
3887 5292 1.002134 CATCTTCCTGGCGGTGGTT 60.002 57.895 0.00 0.00 0.00 3.67
3962 5367 6.809196 AGAAAGCTAATCTATTATCTTCGCCG 59.191 38.462 0.25 0.00 30.11 6.46
4005 5410 7.272978 TCAAGCACAGGAGGTTAATAATCTAC 58.727 38.462 0.00 0.00 0.00 2.59
4021 5426 7.543947 TGTATCAAGTATCAATCAAGCACAG 57.456 36.000 0.00 0.00 0.00 3.66
4081 5511 6.739331 ACTTCATATTAGAGAAGGGACCAG 57.261 41.667 7.05 0.00 44.20 4.00
4105 5536 8.854117 GGCATGAGAGTTATTCAAATAGGAAAT 58.146 33.333 0.00 0.00 0.00 2.17
4384 5815 4.210331 ACTCTTCTTGTGCATCTTTTGGT 58.790 39.130 0.00 0.00 0.00 3.67
4436 5867 1.449246 CTGCTTTCTGCTCCGAGGG 60.449 63.158 0.00 0.00 43.37 4.30
4480 5911 1.949525 AGTGAATGAAGCGTGCAAGTT 59.050 42.857 0.59 0.00 0.00 2.66
4553 5984 7.413767 GGTTTTTAGTGACCGACTATGGATTTC 60.414 40.741 0.00 0.00 37.01 2.17
4555 5986 5.878669 GGTTTTTAGTGACCGACTATGGATT 59.121 40.000 0.00 0.00 37.01 3.01
4735 6166 0.467844 AGCACACCACCATGCAGAAA 60.468 50.000 0.00 0.00 44.59 2.52
4739 6170 0.540133 AATCAGCACACCACCATGCA 60.540 50.000 0.00 0.00 44.59 3.96
4741 6172 2.359848 CCATAATCAGCACACCACCATG 59.640 50.000 0.00 0.00 0.00 3.66
4767 6198 2.023673 CCTCAGCACTGTCCAACAAAA 58.976 47.619 0.00 0.00 0.00 2.44
4929 6360 4.120589 GCTAAGGTATACAACTGTCTGGC 58.879 47.826 5.01 0.00 0.00 4.85
4935 6366 4.181578 ACTTGCGCTAAGGTATACAACTG 58.818 43.478 19.13 0.00 40.84 3.16
4954 6385 2.174854 ACTGGGTGAAAGGTAGCAACTT 59.825 45.455 0.00 0.00 0.00 2.66
4962 6393 0.188342 ATGGCAACTGGGTGAAAGGT 59.812 50.000 0.00 0.00 37.61 3.50
4996 6427 2.697431 TAACATCGCACAACAAAGCC 57.303 45.000 0.00 0.00 0.00 4.35
5065 6496 3.669536 TCTTATTGTTCATGCGACACCA 58.330 40.909 1.78 0.00 0.00 4.17
5239 6670 5.245751 AGGGTAGAACAGAGCATATGATCAG 59.754 44.000 22.20 16.79 31.88 2.90
5252 6683 2.752030 TGAGGATGGAGGGTAGAACAG 58.248 52.381 0.00 0.00 0.00 3.16
5256 6687 2.022035 ACCAATGAGGATGGAGGGTAGA 60.022 50.000 0.00 0.00 40.56 2.59
5257 6688 2.105477 CACCAATGAGGATGGAGGGTAG 59.895 54.545 0.00 0.00 40.56 3.18
5258 6689 2.126882 CACCAATGAGGATGGAGGGTA 58.873 52.381 0.00 0.00 40.56 3.69
5269 6700 4.685628 AGCAAATAAAAACGCACCAATGAG 59.314 37.500 0.00 0.00 0.00 2.90
5279 6710 6.636666 ATGATCTTGCAGCAAATAAAAACG 57.363 33.333 9.65 0.00 0.00 3.60
5379 6810 5.860941 TTTTTCTACACATGGCTTGGAAA 57.139 34.783 5.31 0.00 0.00 3.13
5455 6886 4.671831 TCCCACAAGAATTAGCATCCAAA 58.328 39.130 0.00 0.00 0.00 3.28
5553 6985 2.148768 GAACACGTAAGGAAGGTTGGG 58.851 52.381 0.00 0.00 46.39 4.12
5557 6989 1.331214 TCGGAACACGTAAGGAAGGT 58.669 50.000 0.00 0.00 44.69 3.50
5730 7167 8.504005 CGTAGGACTTCAACTATGTTTTGAATT 58.496 33.333 0.00 0.00 41.10 2.17
5736 7173 5.245526 ACCTCGTAGGACTTCAACTATGTTT 59.754 40.000 7.76 0.00 37.67 2.83
5740 7177 3.952967 GGACCTCGTAGGACTTCAACTAT 59.047 47.826 7.76 0.00 37.67 2.12
5772 7209 9.507329 TCTGATTTCAGCTACTTACAATCTTTT 57.493 29.630 2.60 0.00 43.46 2.27
5773 7210 9.507329 TTCTGATTTCAGCTACTTACAATCTTT 57.493 29.630 2.60 0.00 43.46 2.52
5855 7292 7.013655 AGTGAATACAATTATGGAGGTCATTGC 59.986 37.037 0.00 0.00 37.30 3.56
5856 7293 8.455903 AGTGAATACAATTATGGAGGTCATTG 57.544 34.615 0.00 0.00 37.30 2.82
5857 7294 9.784531 CTAGTGAATACAATTATGGAGGTCATT 57.215 33.333 0.00 0.00 37.30 2.57
5873 7313 5.701290 AGGTGTGTGAAAAGCTAGTGAATAC 59.299 40.000 0.00 0.00 0.00 1.89
5909 7349 6.035843 CCGTCAAAATTTGGACCATCTATTG 58.964 40.000 18.17 3.64 0.00 1.90
5910 7350 5.714806 ACCGTCAAAATTTGGACCATCTATT 59.285 36.000 18.17 0.00 0.00 1.73
5911 7351 5.261216 ACCGTCAAAATTTGGACCATCTAT 58.739 37.500 18.17 0.00 0.00 1.98
5912 7352 4.658063 ACCGTCAAAATTTGGACCATCTA 58.342 39.130 18.17 0.00 0.00 1.98
5913 7353 3.496331 ACCGTCAAAATTTGGACCATCT 58.504 40.909 18.17 0.00 0.00 2.90
5914 7354 3.366985 GGACCGTCAAAATTTGGACCATC 60.367 47.826 18.17 15.03 36.50 3.51
5915 7355 2.560981 GGACCGTCAAAATTTGGACCAT 59.439 45.455 18.17 7.90 36.50 3.55
5916 7356 1.957877 GGACCGTCAAAATTTGGACCA 59.042 47.619 18.17 0.00 36.50 4.02
5917 7357 1.957877 TGGACCGTCAAAATTTGGACC 59.042 47.619 18.17 12.12 36.93 4.46
5918 7358 3.719173 TTGGACCGTCAAAATTTGGAC 57.281 42.857 14.77 14.77 0.00 4.02
5919 7359 4.737855 TTTTGGACCGTCAAAATTTGGA 57.262 36.364 5.83 0.00 40.41 3.53
5925 7365 2.550606 CTCCGATTTTGGACCGTCAAAA 59.449 45.455 0.00 0.00 46.42 2.44
5926 7366 2.147958 CTCCGATTTTGGACCGTCAAA 58.852 47.619 0.00 0.00 35.15 2.69
5927 7367 1.345089 TCTCCGATTTTGGACCGTCAA 59.655 47.619 0.00 0.00 33.48 3.18
5928 7368 0.970640 TCTCCGATTTTGGACCGTCA 59.029 50.000 0.00 0.00 33.48 4.35
5929 7369 1.933853 CATCTCCGATTTTGGACCGTC 59.066 52.381 0.00 0.00 33.48 4.79
5930 7370 1.278127 ACATCTCCGATTTTGGACCGT 59.722 47.619 0.00 0.00 33.48 4.83
5931 7371 2.024176 ACATCTCCGATTTTGGACCG 57.976 50.000 0.00 0.00 33.48 4.79
5932 7372 6.451064 AATTTACATCTCCGATTTTGGACC 57.549 37.500 0.00 0.00 33.48 4.46
5933 7373 8.173321 CAAAATTTACATCTCCGATTTTGGAC 57.827 34.615 10.43 0.00 40.94 4.02
5936 7376 7.275560 GGTCCAAAATTTACATCTCCGATTTTG 59.724 37.037 11.05 11.05 42.74 2.44
5937 7377 7.320399 GGTCCAAAATTTACATCTCCGATTTT 58.680 34.615 0.00 0.00 31.99 1.82
5938 7378 6.404293 CGGTCCAAAATTTACATCTCCGATTT 60.404 38.462 11.32 0.00 36.97 2.17
5939 7379 5.065988 CGGTCCAAAATTTACATCTCCGATT 59.934 40.000 11.32 0.00 36.97 3.34
5940 7380 4.574828 CGGTCCAAAATTTACATCTCCGAT 59.425 41.667 11.32 0.00 36.97 4.18
5941 7381 3.936453 CGGTCCAAAATTTACATCTCCGA 59.064 43.478 11.32 0.00 36.97 4.55
5942 7382 3.486875 GCGGTCCAAAATTTACATCTCCG 60.487 47.826 12.00 12.00 37.71 4.63
5943 7383 3.181490 GGCGGTCCAAAATTTACATCTCC 60.181 47.826 0.00 0.00 0.00 3.71
5944 7384 3.442273 TGGCGGTCCAAAATTTACATCTC 59.558 43.478 0.00 0.00 39.99 2.75
5945 7385 3.426615 TGGCGGTCCAAAATTTACATCT 58.573 40.909 0.00 0.00 39.99 2.90
5946 7386 3.859411 TGGCGGTCCAAAATTTACATC 57.141 42.857 0.00 0.00 39.99 3.06
5957 7397 3.124686 GCACTTTTTGGCGGTCCA 58.875 55.556 0.00 0.00 41.55 4.02
5965 7405 2.535574 GAGCTCCAAAACGCACTTTTTG 59.464 45.455 0.87 5.60 43.34 2.44
5966 7406 2.481276 GGAGCTCCAAAACGCACTTTTT 60.481 45.455 28.43 0.00 35.64 1.94
5967 7407 1.067060 GGAGCTCCAAAACGCACTTTT 59.933 47.619 28.43 0.00 35.64 2.27
5968 7408 0.668535 GGAGCTCCAAAACGCACTTT 59.331 50.000 28.43 0.00 35.64 2.66
5969 7409 1.507141 CGGAGCTCCAAAACGCACTT 61.507 55.000 31.67 0.00 35.14 3.16
5970 7410 1.961277 CGGAGCTCCAAAACGCACT 60.961 57.895 31.67 0.00 35.14 4.40
5971 7411 1.503818 TTCGGAGCTCCAAAACGCAC 61.504 55.000 31.67 2.06 35.14 5.34
5972 7412 0.816018 TTTCGGAGCTCCAAAACGCA 60.816 50.000 31.67 5.55 35.14 5.24
5973 7413 0.309612 TTTTCGGAGCTCCAAAACGC 59.690 50.000 31.67 3.61 35.14 4.84
5974 7414 2.766970 TTTTTCGGAGCTCCAAAACG 57.233 45.000 31.67 17.41 35.14 3.60
6001 7441 9.152342 ACCATGAATTTGGACCATCTTTTGGAG 62.152 40.741 17.46 1.31 42.98 3.86
6002 7442 7.433290 ACCATGAATTTGGACCATCTTTTGGA 61.433 38.462 17.46 0.00 42.98 3.53
6003 7443 5.280113 ACCATGAATTTGGACCATCTTTTGG 60.280 40.000 3.10 6.49 44.65 3.28
6004 7444 5.797051 ACCATGAATTTGGACCATCTTTTG 58.203 37.500 3.10 0.00 39.25 2.44
6005 7445 5.046376 GGACCATGAATTTGGACCATCTTTT 60.046 40.000 11.42 0.00 46.78 2.27
6006 7446 4.467438 GGACCATGAATTTGGACCATCTTT 59.533 41.667 11.42 0.00 46.78 2.52
6007 7447 4.026052 GGACCATGAATTTGGACCATCTT 58.974 43.478 11.42 0.00 46.78 2.40
6008 7448 3.635591 GGACCATGAATTTGGACCATCT 58.364 45.455 11.42 0.00 46.78 2.90
6013 7453 5.467035 TCTTTTGGACCATGAATTTGGAC 57.533 39.130 3.10 0.00 39.25 4.02
6014 7454 4.021192 GCTCTTTTGGACCATGAATTTGGA 60.021 41.667 3.10 0.00 39.25 3.53
6015 7455 4.248058 GCTCTTTTGGACCATGAATTTGG 58.752 43.478 0.00 0.00 42.82 3.28
6016 7456 4.885413 TGCTCTTTTGGACCATGAATTTG 58.115 39.130 0.00 0.00 0.00 2.32
6017 7457 5.070847 AGTTGCTCTTTTGGACCATGAATTT 59.929 36.000 0.00 0.00 0.00 1.82
6018 7458 4.590222 AGTTGCTCTTTTGGACCATGAATT 59.410 37.500 0.00 0.00 0.00 2.17
6019 7459 4.154942 AGTTGCTCTTTTGGACCATGAAT 58.845 39.130 0.00 0.00 0.00 2.57
6020 7460 3.565307 AGTTGCTCTTTTGGACCATGAA 58.435 40.909 0.00 0.00 0.00 2.57
6021 7461 3.149196 GAGTTGCTCTTTTGGACCATGA 58.851 45.455 0.00 0.00 0.00 3.07
6022 7462 2.229784 GGAGTTGCTCTTTTGGACCATG 59.770 50.000 0.00 0.00 0.00 3.66
6023 7463 2.158475 TGGAGTTGCTCTTTTGGACCAT 60.158 45.455 0.00 0.00 0.00 3.55
6024 7464 1.214175 TGGAGTTGCTCTTTTGGACCA 59.786 47.619 0.00 0.00 0.00 4.02
6025 7465 1.981256 TGGAGTTGCTCTTTTGGACC 58.019 50.000 0.00 0.00 0.00 4.46
6026 7466 4.156739 CCTATTGGAGTTGCTCTTTTGGAC 59.843 45.833 0.00 0.00 34.57 4.02
6027 7467 4.202567 ACCTATTGGAGTTGCTCTTTTGGA 60.203 41.667 0.00 0.00 37.04 3.53
6028 7468 4.082125 ACCTATTGGAGTTGCTCTTTTGG 58.918 43.478 0.00 0.00 37.04 3.28
6029 7469 5.051891 CACCTATTGGAGTTGCTCTTTTG 57.948 43.478 0.00 0.00 37.04 2.44
6041 7481 8.467640 ACCATGAATTTGGACCACCTATTGGA 62.468 42.308 12.96 0.00 43.11 3.53
6042 7482 6.337457 ACCATGAATTTGGACCACCTATTGG 61.337 44.000 3.10 0.23 44.81 3.16
6043 7483 4.711355 ACCATGAATTTGGACCACCTATTG 59.289 41.667 3.10 0.00 39.25 1.90
6044 7484 4.946646 ACCATGAATTTGGACCACCTATT 58.053 39.130 3.10 0.00 39.25 1.73
6045 7485 4.536765 GACCATGAATTTGGACCACCTAT 58.463 43.478 3.10 0.00 39.25 2.57
6046 7486 3.308832 GGACCATGAATTTGGACCACCTA 60.309 47.826 11.42 0.00 46.78 3.08
6047 7487 2.557452 GGACCATGAATTTGGACCACCT 60.557 50.000 11.42 0.00 46.78 4.00
6048 7488 1.824852 GGACCATGAATTTGGACCACC 59.175 52.381 11.42 3.12 46.78 4.61
6068 7508 1.967779 ACGGAATTCCCCAAGGTTTTG 59.032 47.619 19.01 3.18 0.00 2.44
6069 7509 2.244695 GACGGAATTCCCCAAGGTTTT 58.755 47.619 19.01 0.00 0.00 2.43
6070 7510 1.884928 CGACGGAATTCCCCAAGGTTT 60.885 52.381 19.01 0.00 0.00 3.27
6071 7511 0.322187 CGACGGAATTCCCCAAGGTT 60.322 55.000 19.01 0.00 0.00 3.50
6072 7512 1.196104 TCGACGGAATTCCCCAAGGT 61.196 55.000 19.01 10.17 0.00 3.50
6073 7513 0.035820 TTCGACGGAATTCCCCAAGG 60.036 55.000 19.01 6.83 0.00 3.61
6074 7514 1.084289 GTTCGACGGAATTCCCCAAG 58.916 55.000 19.01 7.22 34.05 3.61
6075 7515 0.397187 TGTTCGACGGAATTCCCCAA 59.603 50.000 19.01 3.66 34.05 4.12
6076 7516 0.320946 GTGTTCGACGGAATTCCCCA 60.321 55.000 19.01 3.58 34.05 4.96
6077 7517 1.022982 GGTGTTCGACGGAATTCCCC 61.023 60.000 19.01 9.89 34.05 4.81
6078 7518 0.036671 AGGTGTTCGACGGAATTCCC 60.037 55.000 19.01 4.80 34.05 3.97
6079 7519 1.463444 CAAGGTGTTCGACGGAATTCC 59.537 52.381 15.01 15.01 34.05 3.01
6080 7520 2.096417 CACAAGGTGTTCGACGGAATTC 60.096 50.000 0.00 0.00 34.05 2.17
6081 7521 1.871039 CACAAGGTGTTCGACGGAATT 59.129 47.619 0.00 0.00 34.05 2.17
6082 7522 1.508632 CACAAGGTGTTCGACGGAAT 58.491 50.000 0.00 0.00 34.05 3.01
6083 7523 1.155424 GCACAAGGTGTTCGACGGAA 61.155 55.000 0.00 0.00 35.75 4.30
6084 7524 1.593209 GCACAAGGTGTTCGACGGA 60.593 57.895 0.00 0.00 35.75 4.69
6085 7525 2.935955 GCACAAGGTGTTCGACGG 59.064 61.111 0.00 0.00 35.75 4.79
6086 7526 2.544359 CGCACAAGGTGTTCGACG 59.456 61.111 0.00 0.00 39.26 5.12
6087 7527 2.248431 GCGCACAAGGTGTTCGAC 59.752 61.111 0.30 0.00 39.26 4.20
6088 7528 3.334751 CGCGCACAAGGTGTTCGA 61.335 61.111 8.75 0.00 39.26 3.71
6089 7529 3.636043 ACGCGCACAAGGTGTTCG 61.636 61.111 5.73 9.53 39.87 3.95
6090 7530 2.052237 CACGCGCACAAGGTGTTC 60.052 61.111 5.73 0.00 35.75 3.18
6091 7531 3.582120 CCACGCGCACAAGGTGTT 61.582 61.111 5.73 0.00 35.75 3.32
6092 7532 4.849310 ACCACGCGCACAAGGTGT 62.849 61.111 5.73 0.00 35.75 4.16
6093 7533 4.312231 CACCACGCGCACAAGGTG 62.312 66.667 18.79 18.79 44.72 4.00
6096 7536 3.240606 CTTCCACCACGCGCACAAG 62.241 63.158 5.73 0.00 0.00 3.16
6097 7537 3.276091 CTTCCACCACGCGCACAA 61.276 61.111 5.73 0.00 0.00 3.33
6098 7538 3.741830 TTCTTCCACCACGCGCACA 62.742 57.895 5.73 0.00 0.00 4.57
6099 7539 2.954753 CTTCTTCCACCACGCGCAC 61.955 63.158 5.73 0.00 0.00 5.34
6100 7540 2.449031 ATCTTCTTCCACCACGCGCA 62.449 55.000 5.73 0.00 0.00 6.09
6101 7541 1.741770 ATCTTCTTCCACCACGCGC 60.742 57.895 5.73 0.00 0.00 6.86
6102 7542 1.361668 CCATCTTCTTCCACCACGCG 61.362 60.000 3.53 3.53 0.00 6.01
6103 7543 1.648467 GCCATCTTCTTCCACCACGC 61.648 60.000 0.00 0.00 0.00 5.34
6104 7544 1.026718 GGCCATCTTCTTCCACCACG 61.027 60.000 0.00 0.00 0.00 4.94
6105 7545 1.026718 CGGCCATCTTCTTCCACCAC 61.027 60.000 2.24 0.00 0.00 4.16
6106 7546 1.299648 CGGCCATCTTCTTCCACCA 59.700 57.895 2.24 0.00 0.00 4.17
6107 7547 2.115291 GCGGCCATCTTCTTCCACC 61.115 63.158 2.24 0.00 0.00 4.61
6108 7548 2.115291 GGCGGCCATCTTCTTCCAC 61.115 63.158 15.62 0.00 0.00 4.02
6109 7549 2.272146 GGCGGCCATCTTCTTCCA 59.728 61.111 15.62 0.00 0.00 3.53
6110 7550 2.897350 CGGCGGCCATCTTCTTCC 60.897 66.667 20.71 0.00 0.00 3.46
6111 7551 2.897350 CCGGCGGCCATCTTCTTC 60.897 66.667 20.71 0.00 0.00 2.87
6112 7552 3.268103 AACCGGCGGCCATCTTCTT 62.268 57.895 28.71 7.15 0.00 2.52
6113 7553 3.717294 AACCGGCGGCCATCTTCT 61.717 61.111 28.71 0.00 0.00 2.85
6114 7554 3.508840 CAACCGGCGGCCATCTTC 61.509 66.667 28.71 0.00 0.00 2.87
6117 7557 4.875713 ATCCAACCGGCGGCCATC 62.876 66.667 28.71 0.00 0.00 3.51
6118 7558 4.440829 AATCCAACCGGCGGCCAT 62.441 61.111 28.71 10.13 0.00 4.40
6124 7564 2.275380 AACAGCCAATCCAACCGGC 61.275 57.895 0.00 0.00 46.62 6.13
6125 7565 1.586028 CAACAGCCAATCCAACCGG 59.414 57.895 0.00 0.00 0.00 5.28
6126 7566 1.080569 GCAACAGCCAATCCAACCG 60.081 57.895 0.00 0.00 0.00 4.44
6127 7567 1.080569 CGCAACAGCCAATCCAACC 60.081 57.895 0.00 0.00 0.00 3.77
6128 7568 1.080569 CCGCAACAGCCAATCCAAC 60.081 57.895 0.00 0.00 0.00 3.77
6129 7569 1.228398 TCCGCAACAGCCAATCCAA 60.228 52.632 0.00 0.00 0.00 3.53
6130 7570 1.971167 GTCCGCAACAGCCAATCCA 60.971 57.895 0.00 0.00 0.00 3.41
6131 7571 2.877691 GTCCGCAACAGCCAATCC 59.122 61.111 0.00 0.00 0.00 3.01
6132 7572 2.480555 CGTCCGCAACAGCCAATC 59.519 61.111 0.00 0.00 0.00 2.67
6133 7573 3.055719 CCGTCCGCAACAGCCAAT 61.056 61.111 0.00 0.00 0.00 3.16
6145 7585 4.517815 TTATCACCGCCGCCGTCC 62.518 66.667 0.00 0.00 0.00 4.79
6146 7586 2.894240 TTCTTATCACCGCCGCCGTC 62.894 60.000 0.00 0.00 0.00 4.79
6147 7587 2.510064 TTTCTTATCACCGCCGCCGT 62.510 55.000 0.00 0.00 0.00 5.68
6148 7588 1.157870 ATTTCTTATCACCGCCGCCG 61.158 55.000 0.00 0.00 0.00 6.46
6149 7589 0.307760 CATTTCTTATCACCGCCGCC 59.692 55.000 0.00 0.00 0.00 6.13
6150 7590 1.261619 CTCATTTCTTATCACCGCCGC 59.738 52.381 0.00 0.00 0.00 6.53
6151 7591 1.867233 CCTCATTTCTTATCACCGCCG 59.133 52.381 0.00 0.00 0.00 6.46
6152 7592 2.919228 ACCTCATTTCTTATCACCGCC 58.081 47.619 0.00 0.00 0.00 6.13
6153 7593 4.058817 CCTACCTCATTTCTTATCACCGC 58.941 47.826 0.00 0.00 0.00 5.68
6154 7594 5.509840 CCTCCTACCTCATTTCTTATCACCG 60.510 48.000 0.00 0.00 0.00 4.94
6155 7595 5.743422 GCCTCCTACCTCATTTCTTATCACC 60.743 48.000 0.00 0.00 0.00 4.02
6156 7596 5.301555 GCCTCCTACCTCATTTCTTATCAC 58.698 45.833 0.00 0.00 0.00 3.06
6157 7597 4.348168 GGCCTCCTACCTCATTTCTTATCA 59.652 45.833 0.00 0.00 0.00 2.15
6158 7598 4.561734 CGGCCTCCTACCTCATTTCTTATC 60.562 50.000 0.00 0.00 0.00 1.75
6159 7599 3.325135 CGGCCTCCTACCTCATTTCTTAT 59.675 47.826 0.00 0.00 0.00 1.73
6160 7600 2.698797 CGGCCTCCTACCTCATTTCTTA 59.301 50.000 0.00 0.00 0.00 2.10
6161 7601 1.486726 CGGCCTCCTACCTCATTTCTT 59.513 52.381 0.00 0.00 0.00 2.52
6162 7602 1.123928 CGGCCTCCTACCTCATTTCT 58.876 55.000 0.00 0.00 0.00 2.52
6163 7603 1.120530 TCGGCCTCCTACCTCATTTC 58.879 55.000 0.00 0.00 0.00 2.17
6164 7604 0.831307 GTCGGCCTCCTACCTCATTT 59.169 55.000 0.00 0.00 0.00 2.32
6165 7605 1.049289 GGTCGGCCTCCTACCTCATT 61.049 60.000 0.00 0.00 36.56 2.57
6166 7606 1.457831 GGTCGGCCTCCTACCTCAT 60.458 63.158 0.00 0.00 36.56 2.90
6167 7607 2.043248 GGTCGGCCTCCTACCTCA 60.043 66.667 0.00 0.00 36.56 3.86
6168 7608 1.677637 CTTGGTCGGCCTCCTACCTC 61.678 65.000 7.97 0.00 39.72 3.85
6169 7609 1.686110 CTTGGTCGGCCTCCTACCT 60.686 63.158 7.97 0.00 39.72 3.08
6170 7610 1.677637 CTCTTGGTCGGCCTCCTACC 61.678 65.000 7.97 10.11 39.49 3.18
6171 7611 1.677637 CCTCTTGGTCGGCCTCCTAC 61.678 65.000 7.97 1.35 35.27 3.18
6172 7612 1.381327 CCTCTTGGTCGGCCTCCTA 60.381 63.158 7.97 6.60 35.27 2.94
6173 7613 2.685380 CCTCTTGGTCGGCCTCCT 60.685 66.667 7.97 0.00 35.27 3.69
6174 7614 2.683933 TCCTCTTGGTCGGCCTCC 60.684 66.667 7.97 3.76 35.27 4.30
6175 7615 2.896443 CTCCTCTTGGTCGGCCTC 59.104 66.667 7.97 0.00 35.27 4.70
6176 7616 3.394836 GCTCCTCTTGGTCGGCCT 61.395 66.667 7.97 0.00 35.27 5.19
6177 7617 3.378399 GAGCTCCTCTTGGTCGGCC 62.378 68.421 0.00 0.00 34.23 6.13
6178 7618 2.185608 GAGCTCCTCTTGGTCGGC 59.814 66.667 0.87 0.00 34.23 5.54
6181 7621 1.137825 CGTCGAGCTCCTCTTGGTC 59.862 63.158 8.47 0.00 34.23 4.02
6182 7622 2.344203 CCGTCGAGCTCCTCTTGGT 61.344 63.158 8.47 0.00 34.23 3.67
6183 7623 2.492090 CCGTCGAGCTCCTCTTGG 59.508 66.667 8.47 0.00 0.00 3.61
6184 7624 2.492090 CCCGTCGAGCTCCTCTTG 59.508 66.667 8.47 0.00 0.00 3.02
6185 7625 3.453679 GCCCGTCGAGCTCCTCTT 61.454 66.667 8.47 0.00 0.00 2.85
6196 7636 3.753070 CTAGTCTTCGCCGCCCGTC 62.753 68.421 0.00 0.00 38.35 4.79
6197 7637 3.823330 CTAGTCTTCGCCGCCCGT 61.823 66.667 0.00 0.00 38.35 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.