Multiple sequence alignment - TraesCS5A01G089800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G089800 chr5A 100.000 2534 0 0 1 2534 120141819 120139286 0.000000e+00 4680.0
1 TraesCS5A01G089800 chr5A 86.989 269 32 3 1714 1979 166154621 166154353 1.470000e-77 300.0
2 TraesCS5A01G089800 chr5A 84.536 291 40 5 1713 1998 174951846 174952136 1.480000e-72 283.0
3 TraesCS5A01G089800 chr5A 92.727 110 8 0 1607 1716 189471497 189471388 2.610000e-35 159.0
4 TraesCS5A01G089800 chr5A 90.909 110 10 0 1607 1716 189620033 189619924 5.650000e-32 148.0
5 TraesCS5A01G089800 chr5A 83.846 130 18 3 1607 1734 189537505 189537377 1.230000e-23 121.0
6 TraesCS5A01G089800 chr2B 86.725 1258 124 22 1297 2518 428665263 428666513 0.000000e+00 1358.0
7 TraesCS5A01G089800 chr2B 86.328 1258 130 19 1297 2518 428658259 428659510 0.000000e+00 1332.0
8 TraesCS5A01G089800 chr2B 92.143 420 31 1 1297 1716 413987833 413987416 2.170000e-165 592.0
9 TraesCS5A01G089800 chr2B 91.667 420 33 1 1297 1716 413979792 413979375 4.700000e-162 580.0
10 TraesCS5A01G089800 chr2B 87.413 429 37 8 2110 2521 580031689 580031261 6.340000e-131 477.0
11 TraesCS5A01G089800 chr2B 87.411 421 44 6 2110 2521 580038603 580038183 2.280000e-130 475.0
12 TraesCS5A01G089800 chr2B 86.381 257 31 3 1323 1579 320459007 320458755 6.900000e-71 278.0
13 TraesCS5A01G089800 chr2B 73.820 466 80 33 998 1444 457248632 457249074 2.030000e-31 147.0
14 TraesCS5A01G089800 chr7B 89.693 815 77 6 1297 2106 657688935 657689747 0.000000e+00 1033.0
15 TraesCS5A01G089800 chr5B 88.213 806 86 7 1297 2096 179664648 179663846 0.000000e+00 953.0
16 TraesCS5A01G089800 chr5B 85.782 422 39 10 2118 2521 179663850 179663432 6.480000e-116 427.0
17 TraesCS5A01G089800 chr5B 93.103 203 14 0 1583 1785 224933557 224933355 5.300000e-77 298.0
18 TraesCS5A01G089800 chr5B 92.000 200 16 0 1584 1783 224941069 224940870 5.340000e-72 281.0
19 TraesCS5A01G089800 chr5B 92.562 121 8 1 1600 1720 225661537 225661656 3.350000e-39 172.0
20 TraesCS5A01G089800 chr3A 83.097 917 112 22 1627 2524 233179164 233178272 0.000000e+00 795.0
21 TraesCS5A01G089800 chr3A 84.311 733 99 12 78 802 536336713 536335989 0.000000e+00 702.0
22 TraesCS5A01G089800 chr3A 81.066 919 113 25 1626 2524 233195210 233194333 0.000000e+00 676.0
23 TraesCS5A01G089800 chr3A 86.692 526 62 7 1625 2144 255666305 255666828 6.080000e-161 577.0
24 TraesCS5A01G089800 chr4A 82.604 960 106 27 1595 2534 428705789 428704871 0.000000e+00 791.0
25 TraesCS5A01G089800 chr4A 87.129 606 68 8 1594 2190 428712401 428711797 0.000000e+00 678.0
26 TraesCS5A01G089800 chr4A 87.695 577 61 10 238 810 244058217 244058787 0.000000e+00 664.0
27 TraesCS5A01G089800 chr4A 84.649 684 71 17 133 809 244049306 244049962 0.000000e+00 651.0
28 TraesCS5A01G089800 chr4A 91.186 295 25 1 1583 1876 570624430 570624136 1.410000e-107 399.0
29 TraesCS5A01G089800 chr4A 90.136 294 28 1 1583 1875 46393147 46393440 5.120000e-102 381.0
30 TraesCS5A01G089800 chr4A 81.627 381 52 16 969 1338 332399053 332398680 1.470000e-77 300.0
31 TraesCS5A01G089800 chr5D 86.131 685 62 16 133 810 493474964 493475622 0.000000e+00 708.0
32 TraesCS5A01G089800 chr5D 85.222 697 69 17 133 823 224377851 224377183 0.000000e+00 686.0
33 TraesCS5A01G089800 chr5D 82.888 187 27 4 2335 2518 433069396 433069580 2.020000e-36 163.0
34 TraesCS5A01G089800 chr7A 85.673 684 66 15 133 810 264415347 264416004 0.000000e+00 691.0
35 TraesCS5A01G089800 chr7A 90.508 295 27 1 1583 1876 210612824 210613118 3.060000e-104 388.0
36 TraesCS5A01G089800 chr6A 83.758 745 94 22 105 832 262621479 262622213 0.000000e+00 680.0
37 TraesCS5A01G089800 chr6A 90.753 292 26 1 1586 1876 270279009 270278718 3.060000e-104 388.0
38 TraesCS5A01G089800 chr6A 90.169 295 28 1 1583 1876 430115005 430115299 1.420000e-102 383.0
39 TraesCS5A01G089800 chr6A 89.456 294 29 2 1585 1876 430106849 430107142 1.110000e-98 370.0
40 TraesCS5A01G089800 chr6A 89.384 292 30 1 1586 1876 270286917 270286626 1.430000e-97 366.0
41 TraesCS5A01G089800 chr6A 77.543 521 87 17 2041 2534 430115325 430115842 1.150000e-73 287.0
42 TraesCS5A01G089800 chr6A 80.217 369 61 8 2165 2524 555468776 555468411 1.490000e-67 267.0
43 TraesCS5A01G089800 chr6A 79.891 368 62 8 2165 2524 555477129 555476766 2.500000e-65 259.0
44 TraesCS5A01G089800 chr6A 84.541 207 28 2 2331 2534 122139919 122139714 4.270000e-48 202.0
45 TraesCS5A01G089800 chr6A 74.939 407 79 20 2136 2529 302741149 302740753 5.610000e-37 165.0
46 TraesCS5A01G089800 chr6A 89.655 58 5 1 1728 1785 484527995 484528051 3.500000e-09 73.1
47 TraesCS5A01G089800 chr6A 89.655 58 5 1 1728 1785 484536386 484536442 3.500000e-09 73.1
48 TraesCS5A01G089800 chr4D 84.814 698 70 19 133 823 285167363 285166695 0.000000e+00 669.0
49 TraesCS5A01G089800 chr4D 79.630 432 62 17 922 1339 252082999 252083418 1.150000e-73 287.0
50 TraesCS5A01G089800 chr4D 80.256 390 50 19 944 1321 252044315 252044689 4.160000e-68 268.0
51 TraesCS5A01G089800 chr4D 84.974 193 24 4 2333 2521 208151674 208151483 9.250000e-45 191.0
52 TraesCS5A01G089800 chr4D 83.000 200 29 5 2324 2521 68498087 68498283 2.590000e-40 176.0
53 TraesCS5A01G089800 chr4D 83.425 181 26 2 2344 2521 219684205 219684026 5.610000e-37 165.0
54 TraesCS5A01G089800 chr4D 100.000 32 0 0 1676 1707 184352211 184352242 2.720000e-05 60.2
55 TraesCS5A01G089800 chr4D 94.872 39 0 2 1671 1707 184360438 184360476 2.720000e-05 60.2
56 TraesCS5A01G089800 chr4D 92.857 42 1 2 1671 1710 418115930 418115971 2.720000e-05 60.2
57 TraesCS5A01G089800 chr4D 97.143 35 1 0 1676 1710 470624905 470624871 2.720000e-05 60.2
58 TraesCS5A01G089800 chr4D 100.000 30 0 0 1678 1707 139190447 139190476 3.520000e-04 56.5
59 TraesCS5A01G089800 chr3D 87.288 590 63 12 238 823 265021345 265020764 0.000000e+00 664.0
60 TraesCS5A01G089800 chr3D 83.365 529 60 15 24 542 76001293 76000783 4.940000e-127 464.0
61 TraesCS5A01G089800 chr2D 83.213 554 64 18 1985 2518 390045954 390046498 4.900000e-132 481.0
62 TraesCS5A01G089800 chr2D 85.751 393 42 9 1000 1388 220419947 220419565 1.090000e-108 403.0
63 TraesCS5A01G089800 chr2D 84.478 393 47 10 1000 1388 227114012 227113630 2.380000e-100 375.0
64 TraesCS5A01G089800 chr2D 84.021 388 48 8 1000 1383 126593010 126593387 6.660000e-96 361.0
65 TraesCS5A01G089800 chr2D 85.976 328 36 9 1714 2033 281636260 281635935 2.410000e-90 342.0
66 TraesCS5A01G089800 chr2D 78.173 394 69 12 2141 2524 457696957 457696571 4.210000e-58 235.0
67 TraesCS5A01G089800 chr2D 83.193 238 32 5 2303 2534 259611642 259611407 7.100000e-51 211.0
68 TraesCS5A01G089800 chr2D 82.609 207 32 4 2324 2529 462077319 462077522 2.000000e-41 180.0
69 TraesCS5A01G089800 chr2D 82.326 215 29 7 2324 2534 343257688 343257479 7.200000e-41 178.0
70 TraesCS5A01G089800 chr2D 76.758 327 58 14 2212 2524 323549424 323549102 1.560000e-37 167.0
71 TraesCS5A01G089800 chr2D 76.758 327 58 14 2212 2524 323558044 323557722 1.560000e-37 167.0
72 TraesCS5A01G089800 chr2D 94.872 39 0 2 1671 1707 475430944 475430982 2.720000e-05 60.2
73 TraesCS5A01G089800 chr3B 93.204 309 19 1 1297 1605 490779570 490779876 1.070000e-123 453.0
74 TraesCS5A01G089800 chr3B 91.909 309 23 1 1297 1605 490773163 490773469 5.010000e-117 431.0
75 TraesCS5A01G089800 chr3B 82.353 221 36 3 1120 1339 403298808 403298590 3.330000e-44 189.0
76 TraesCS5A01G089800 chr6D 80.303 528 79 21 503 1015 235141394 235141911 2.380000e-100 375.0
77 TraesCS5A01G089800 chr6D 89.180 305 24 6 23 324 198751951 198751653 3.080000e-99 372.0
78 TraesCS5A01G089800 chr6D 83.929 392 49 9 1000 1388 182488761 182488381 1.850000e-96 363.0
79 TraesCS5A01G089800 chr6D 89.116 294 25 5 727 1015 235128392 235128683 2.400000e-95 359.0
80 TraesCS5A01G089800 chr6D 82.952 393 52 10 1000 1388 164263953 164263572 8.680000e-90 340.0
81 TraesCS5A01G089800 chr6D 85.106 235 22 5 2303 2524 269732525 269732291 7.050000e-56 228.0
82 TraesCS5A01G089800 chr6D 84.653 202 20 6 2344 2534 108912811 108912610 9.250000e-45 191.0
83 TraesCS5A01G089800 chr6D 81.857 237 29 6 2311 2534 334810108 334810343 1.200000e-43 187.0
84 TraesCS5A01G089800 chr6D 83.495 206 26 5 2333 2534 171954854 171955055 4.300000e-43 185.0
85 TraesCS5A01G089800 chr6D 83.333 204 31 3 2333 2534 473446817 473447019 4.300000e-43 185.0
86 TraesCS5A01G089800 chr6D 83.178 214 23 6 2333 2534 201738480 201738268 1.550000e-42 183.0
87 TraesCS5A01G089800 chr6D 81.690 213 26 6 2334 2534 254224026 254224237 5.610000e-37 165.0
88 TraesCS5A01G089800 chr6D 90.984 122 10 1 2413 2534 188201374 188201254 2.020000e-36 163.0
89 TraesCS5A01G089800 chr6D 80.000 225 40 5 2300 2521 185789039 185789261 7.250000e-36 161.0
90 TraesCS5A01G089800 chr6D 81.959 194 32 3 2333 2524 438026024 438025832 7.250000e-36 161.0
91 TraesCS5A01G089800 chr6D 88.148 135 15 1 2388 2521 86426088 86426222 2.610000e-35 159.0
92 TraesCS5A01G089800 chr6D 75.063 397 70 23 2141 2521 180086605 180086988 9.380000e-35 158.0
93 TraesCS5A01G089800 chr6D 81.579 190 33 2 2333 2521 308066875 308067063 3.380000e-34 156.0
94 TraesCS5A01G089800 chr6D 82.143 84 13 1 1676 1759 184301528 184301447 1.260000e-08 71.3
95 TraesCS5A01G089800 chr6D 95.122 41 2 0 1676 1716 183445678 183445718 5.850000e-07 65.8
96 TraesCS5A01G089800 chr6D 94.872 39 0 2 1671 1707 373786187 373786225 2.720000e-05 60.2
97 TraesCS5A01G089800 chr6D 94.872 39 0 2 1671 1707 373794489 373794527 2.720000e-05 60.2
98 TraesCS5A01G089800 chr4B 83.434 332 42 11 2210 2534 272095102 272094777 1.910000e-76 296.0
99 TraesCS5A01G089800 chr4B 83.801 321 42 8 2219 2534 272103734 272103419 1.910000e-76 296.0
100 TraesCS5A01G089800 chr4B 82.919 322 43 11 2219 2534 272094047 272093732 1.920000e-71 279.0
101 TraesCS5A01G089800 chr4B 82.866 321 44 10 2219 2534 272077982 272077668 6.900000e-71 278.0
102 TraesCS5A01G089800 chr4B 90.909 121 10 1 1600 1720 594268174 594268055 7.250000e-36 161.0
103 TraesCS5A01G089800 chr4B 90.909 121 10 1 1600 1720 594276189 594276070 7.250000e-36 161.0
104 TraesCS5A01G089800 chr1D 80.402 398 63 13 2136 2524 324795760 324795369 3.190000e-74 289.0
105 TraesCS5A01G089800 chr1D 84.298 242 33 4 2287 2524 145981296 145981056 5.450000e-57 231.0
106 TraesCS5A01G089800 chr1A 80.000 365 62 7 2165 2521 268147331 268147692 2.500000e-65 259.0
107 TraesCS5A01G089800 chr1A 79.508 366 62 9 2165 2521 268136477 268136838 5.410000e-62 248.0
108 TraesCS5A01G089800 chr1A 85.864 191 25 2 2345 2534 163819428 163819617 4.270000e-48 202.0
109 TraesCS5A01G089800 chr1A 81.604 212 36 3 2324 2534 268845445 268845236 3.350000e-39 172.0
110 TraesCS5A01G089800 chr1A 89.655 58 5 1 1728 1785 268145670 268145726 3.500000e-09 73.1
111 TraesCS5A01G089800 chr1A 97.561 41 1 0 1676 1716 129723790 129723750 1.260000e-08 71.3
112 TraesCS5A01G089800 chr7D 84.577 201 24 6 2324 2521 171898484 171898680 2.570000e-45 193.0
113 TraesCS5A01G089800 chr7D 84.577 201 24 6 2324 2521 171906061 171906257 2.570000e-45 193.0
114 TraesCS5A01G089800 chr1B 93.388 121 7 1 1600 1720 503069428 503069309 7.200000e-41 178.0
115 TraesCS5A01G089800 chr1B 92.562 121 8 1 1600 1720 600075075 600075194 3.350000e-39 172.0
116 TraesCS5A01G089800 chrUn 81.959 194 30 3 2344 2534 46438589 46438398 2.610000e-35 159.0
117 TraesCS5A01G089800 chr6B 73.519 540 94 40 937 1451 464496531 464497046 2.610000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G089800 chr5A 120139286 120141819 2533 True 4680.0 4680 100.0000 1 2534 1 chr5A.!!$R1 2533
1 TraesCS5A01G089800 chr2B 428665263 428666513 1250 False 1358.0 1358 86.7250 1297 2518 1 chr2B.!!$F2 1221
2 TraesCS5A01G089800 chr2B 428658259 428659510 1251 False 1332.0 1332 86.3280 1297 2518 1 chr2B.!!$F1 1221
3 TraesCS5A01G089800 chr7B 657688935 657689747 812 False 1033.0 1033 89.6930 1297 2106 1 chr7B.!!$F1 809
4 TraesCS5A01G089800 chr5B 179663432 179664648 1216 True 690.0 953 86.9975 1297 2521 2 chr5B.!!$R3 1224
5 TraesCS5A01G089800 chr3A 233178272 233179164 892 True 795.0 795 83.0970 1627 2524 1 chr3A.!!$R1 897
6 TraesCS5A01G089800 chr3A 536335989 536336713 724 True 702.0 702 84.3110 78 802 1 chr3A.!!$R3 724
7 TraesCS5A01G089800 chr3A 233194333 233195210 877 True 676.0 676 81.0660 1626 2524 1 chr3A.!!$R2 898
8 TraesCS5A01G089800 chr3A 255666305 255666828 523 False 577.0 577 86.6920 1625 2144 1 chr3A.!!$F1 519
9 TraesCS5A01G089800 chr4A 428704871 428705789 918 True 791.0 791 82.6040 1595 2534 1 chr4A.!!$R2 939
10 TraesCS5A01G089800 chr4A 428711797 428712401 604 True 678.0 678 87.1290 1594 2190 1 chr4A.!!$R3 596
11 TraesCS5A01G089800 chr4A 244058217 244058787 570 False 664.0 664 87.6950 238 810 1 chr4A.!!$F3 572
12 TraesCS5A01G089800 chr4A 244049306 244049962 656 False 651.0 651 84.6490 133 809 1 chr4A.!!$F2 676
13 TraesCS5A01G089800 chr5D 493474964 493475622 658 False 708.0 708 86.1310 133 810 1 chr5D.!!$F2 677
14 TraesCS5A01G089800 chr5D 224377183 224377851 668 True 686.0 686 85.2220 133 823 1 chr5D.!!$R1 690
15 TraesCS5A01G089800 chr7A 264415347 264416004 657 False 691.0 691 85.6730 133 810 1 chr7A.!!$F2 677
16 TraesCS5A01G089800 chr6A 262621479 262622213 734 False 680.0 680 83.7580 105 832 1 chr6A.!!$F1 727
17 TraesCS5A01G089800 chr6A 430115005 430115842 837 False 335.0 383 83.8560 1583 2534 2 chr6A.!!$F5 951
18 TraesCS5A01G089800 chr4D 285166695 285167363 668 True 669.0 669 84.8140 133 823 1 chr4D.!!$R3 690
19 TraesCS5A01G089800 chr3D 265020764 265021345 581 True 664.0 664 87.2880 238 823 1 chr3D.!!$R2 585
20 TraesCS5A01G089800 chr3D 76000783 76001293 510 True 464.0 464 83.3650 24 542 1 chr3D.!!$R1 518
21 TraesCS5A01G089800 chr2D 390045954 390046498 544 False 481.0 481 83.2130 1985 2518 1 chr2D.!!$F2 533
22 TraesCS5A01G089800 chr6D 235141394 235141911 517 False 375.0 375 80.3030 503 1015 1 chr6D.!!$F7 512
23 TraesCS5A01G089800 chr4B 272093732 272095102 1370 True 287.5 296 83.1765 2210 2534 2 chr4B.!!$R5 324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1019 0.685097 CCTCCACGAAAAGACCCTCA 59.315 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2089 0.034337 GGTCCGGCTTCTGTTGTGTA 59.966 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.636768 GAGGAAATTCAAAGGTGCGG 57.363 50.000 0.00 0.00 0.00 5.69
20 21 1.886542 GAGGAAATTCAAAGGTGCGGT 59.113 47.619 0.00 0.00 0.00 5.68
21 22 1.613437 AGGAAATTCAAAGGTGCGGTG 59.387 47.619 0.00 0.00 0.00 4.94
22 23 1.611491 GGAAATTCAAAGGTGCGGTGA 59.389 47.619 0.00 0.00 0.00 4.02
26 27 0.950836 TTCAAAGGTGCGGTGATGTG 59.049 50.000 0.00 0.00 0.00 3.21
34 35 2.516930 CGGTGATGTGATGCCCCC 60.517 66.667 0.00 0.00 0.00 5.40
38 39 0.749454 GTGATGTGATGCCCCCAGAC 60.749 60.000 0.00 0.00 0.00 3.51
39 40 0.915872 TGATGTGATGCCCCCAGACT 60.916 55.000 0.00 0.00 0.00 3.24
42 43 0.915872 TGTGATGCCCCCAGACTGAT 60.916 55.000 3.32 0.00 0.00 2.90
46 47 1.992519 ATGCCCCCAGACTGATGCTC 61.993 60.000 3.32 0.00 0.00 4.26
50 51 0.979709 CCCCAGACTGATGCTCCAGA 60.980 60.000 3.32 0.00 37.59 3.86
76 78 8.485578 TCCCTTCCATTTATTTTAGTTGTTGT 57.514 30.769 0.00 0.00 0.00 3.32
168 172 3.827876 TGATCATGTTGAGTGCCATTGTT 59.172 39.130 0.00 0.00 0.00 2.83
173 178 6.157904 TCATGTTGAGTGCCATTGTTATTTG 58.842 36.000 0.00 0.00 0.00 2.32
225 231 1.340088 TGCATTGTGCCATCCTTGTT 58.660 45.000 0.00 0.00 44.23 2.83
226 232 1.001068 TGCATTGTGCCATCCTTGTTG 59.999 47.619 0.00 0.00 44.23 3.33
227 233 1.001181 GCATTGTGCCATCCTTGTTGT 59.999 47.619 0.00 0.00 37.42 3.32
228 234 2.548493 GCATTGTGCCATCCTTGTTGTT 60.548 45.455 0.00 0.00 37.42 2.83
229 235 3.731089 CATTGTGCCATCCTTGTTGTTT 58.269 40.909 0.00 0.00 0.00 2.83
230 236 3.451141 TTGTGCCATCCTTGTTGTTTC 57.549 42.857 0.00 0.00 0.00 2.78
231 237 1.686052 TGTGCCATCCTTGTTGTTTCC 59.314 47.619 0.00 0.00 0.00 3.13
232 238 1.686052 GTGCCATCCTTGTTGTTTCCA 59.314 47.619 0.00 0.00 0.00 3.53
233 239 2.299867 GTGCCATCCTTGTTGTTTCCAT 59.700 45.455 0.00 0.00 0.00 3.41
234 240 2.299582 TGCCATCCTTGTTGTTTCCATG 59.700 45.455 0.00 0.00 0.00 3.66
235 241 2.562298 GCCATCCTTGTTGTTTCCATGA 59.438 45.455 0.00 0.00 0.00 3.07
236 242 3.196254 GCCATCCTTGTTGTTTCCATGAT 59.804 43.478 0.00 0.00 0.00 2.45
237 243 4.678840 GCCATCCTTGTTGTTTCCATGATC 60.679 45.833 0.00 0.00 0.00 2.92
238 244 4.463539 CCATCCTTGTTGTTTCCATGATCA 59.536 41.667 0.00 0.00 0.00 2.92
239 245 5.128171 CCATCCTTGTTGTTTCCATGATCAT 59.872 40.000 1.18 1.18 0.00 2.45
240 246 5.902613 TCCTTGTTGTTTCCATGATCATC 57.097 39.130 4.86 0.00 0.00 2.92
241 247 5.573219 TCCTTGTTGTTTCCATGATCATCT 58.427 37.500 4.86 0.00 0.00 2.90
295 320 7.315142 TGTTCCTCTTGTCATTTTATTGCATC 58.685 34.615 0.00 0.00 0.00 3.91
332 357 6.162777 TCATGCCTTGGTTTGCTTATTTAAC 58.837 36.000 0.00 0.00 0.00 2.01
385 412 7.288852 CCTCTTCTTCTTATCTCCACCTCATTA 59.711 40.741 0.00 0.00 0.00 1.90
388 415 9.844257 CTTCTTCTTATCTCCACCTCATTATTT 57.156 33.333 0.00 0.00 0.00 1.40
551 585 1.228521 CACCATGCCAAGACCACCA 60.229 57.895 0.00 0.00 0.00 4.17
590 624 4.284746 TCTTTTGGAAGTGTTTTGGTTGGT 59.715 37.500 0.00 0.00 34.41 3.67
677 712 9.941325 ATTGCCAAGACATTTTATTCAAATACA 57.059 25.926 0.00 0.00 32.90 2.29
760 796 4.587262 TGGCCTTTTCCTTTTCTAAACCTC 59.413 41.667 3.32 0.00 0.00 3.85
832 877 1.905215 CATCACACTTGTCCTCCTCCT 59.095 52.381 0.00 0.00 0.00 3.69
837 882 1.618837 CACTTGTCCTCCTCCTTCGAA 59.381 52.381 0.00 0.00 0.00 3.71
886 931 1.141053 AGCGCCTCCCTTGGTAATTAG 59.859 52.381 2.29 0.00 0.00 1.73
887 932 1.814248 GCGCCTCCCTTGGTAATTAGG 60.814 57.143 0.00 0.00 0.00 2.69
895 940 2.624838 CCTTGGTAATTAGGCCAGCATG 59.375 50.000 5.01 1.66 36.00 4.06
939 985 3.999705 CTGGCAGCCTCTCTCCCCT 63.000 68.421 14.15 0.00 0.00 4.79
962 1008 1.267121 CCTTTCTTCCTCCTCCACGA 58.733 55.000 0.00 0.00 0.00 4.35
964 1010 2.038557 CCTTTCTTCCTCCTCCACGAAA 59.961 50.000 0.00 0.00 0.00 3.46
973 1019 0.685097 CCTCCACGAAAAGACCCTCA 59.315 55.000 0.00 0.00 0.00 3.86
976 1022 1.697432 TCCACGAAAAGACCCTCACAT 59.303 47.619 0.00 0.00 0.00 3.21
979 1025 2.673368 CACGAAAAGACCCTCACATAGC 59.327 50.000 0.00 0.00 0.00 2.97
991 1037 4.463891 CCCTCACATAGCAAAACTTTGGAT 59.536 41.667 4.45 0.00 38.57 3.41
1040 1086 3.227276 CACGCCCGCTCCTCCTAT 61.227 66.667 0.00 0.00 0.00 2.57
1041 1087 1.901948 CACGCCCGCTCCTCCTATA 60.902 63.158 0.00 0.00 0.00 1.31
1042 1088 1.152610 ACGCCCGCTCCTCCTATAA 60.153 57.895 0.00 0.00 0.00 0.98
1043 1089 0.757935 ACGCCCGCTCCTCCTATAAA 60.758 55.000 0.00 0.00 0.00 1.40
1044 1090 0.038159 CGCCCGCTCCTCCTATAAAG 60.038 60.000 0.00 0.00 0.00 1.85
1045 1091 0.320858 GCCCGCTCCTCCTATAAAGC 60.321 60.000 0.00 0.00 0.00 3.51
1046 1092 0.321996 CCCGCTCCTCCTATAAAGCC 59.678 60.000 0.00 0.00 0.00 4.35
1047 1093 0.321996 CCGCTCCTCCTATAAAGCCC 59.678 60.000 0.00 0.00 0.00 5.19
1048 1094 0.321996 CGCTCCTCCTATAAAGCCCC 59.678 60.000 0.00 0.00 0.00 5.80
1049 1095 1.435256 GCTCCTCCTATAAAGCCCCA 58.565 55.000 0.00 0.00 0.00 4.96
1050 1096 1.349357 GCTCCTCCTATAAAGCCCCAG 59.651 57.143 0.00 0.00 0.00 4.45
1051 1097 2.977808 CTCCTCCTATAAAGCCCCAGA 58.022 52.381 0.00 0.00 0.00 3.86
1052 1098 2.635427 CTCCTCCTATAAAGCCCCAGAC 59.365 54.545 0.00 0.00 0.00 3.51
1053 1099 1.344763 CCTCCTATAAAGCCCCAGACG 59.655 57.143 0.00 0.00 0.00 4.18
1054 1100 1.344763 CTCCTATAAAGCCCCAGACGG 59.655 57.143 0.00 0.00 0.00 4.79
1083 1129 1.498264 GGTTTCCCTCTACCCTCTCC 58.502 60.000 0.00 0.00 0.00 3.71
1084 1130 1.112950 GTTTCCCTCTACCCTCTCCG 58.887 60.000 0.00 0.00 0.00 4.63
1085 1131 0.708802 TTTCCCTCTACCCTCTCCGT 59.291 55.000 0.00 0.00 0.00 4.69
1086 1132 0.033405 TTCCCTCTACCCTCTCCGTG 60.033 60.000 0.00 0.00 0.00 4.94
1087 1133 2.128507 CCCTCTACCCTCTCCGTGC 61.129 68.421 0.00 0.00 0.00 5.34
1088 1134 2.128507 CCTCTACCCTCTCCGTGCC 61.129 68.421 0.00 0.00 0.00 5.01
1089 1135 2.439701 TCTACCCTCTCCGTGCCG 60.440 66.667 0.00 0.00 0.00 5.69
1090 1136 4.208686 CTACCCTCTCCGTGCCGC 62.209 72.222 0.00 0.00 0.00 6.53
1106 1152 4.587189 GCCGCCGCCACCTAGTAG 62.587 72.222 0.00 0.00 0.00 2.57
1107 1153 3.912907 CCGCCGCCACCTAGTAGG 61.913 72.222 15.09 15.09 42.49 3.18
1118 1164 0.460311 CCTAGTAGGTCCAAGCCACG 59.540 60.000 8.17 0.00 0.00 4.94
1119 1165 0.179108 CTAGTAGGTCCAAGCCACGC 60.179 60.000 0.00 0.00 0.00 5.34
1120 1166 1.610554 TAGTAGGTCCAAGCCACGCC 61.611 60.000 0.00 0.00 0.00 5.68
1121 1167 2.925706 TAGGTCCAAGCCACGCCA 60.926 61.111 0.00 0.00 0.00 5.69
1122 1168 3.248446 TAGGTCCAAGCCACGCCAC 62.248 63.158 0.00 0.00 0.00 5.01
1131 1177 4.769063 CCACGCCACGCCACCATA 62.769 66.667 0.00 0.00 0.00 2.74
1132 1178 3.195002 CACGCCACGCCACCATAG 61.195 66.667 0.00 0.00 0.00 2.23
1135 1181 4.794648 GCCACGCCACCATAGCCA 62.795 66.667 0.00 0.00 0.00 4.75
1136 1182 2.192979 CCACGCCACCATAGCCAT 59.807 61.111 0.00 0.00 0.00 4.40
1137 1183 1.893808 CCACGCCACCATAGCCATC 60.894 63.158 0.00 0.00 0.00 3.51
1138 1184 2.108976 ACGCCACCATAGCCATCG 59.891 61.111 0.00 0.00 0.00 3.84
1139 1185 3.349006 CGCCACCATAGCCATCGC 61.349 66.667 0.00 0.00 0.00 4.58
1140 1186 2.980233 GCCACCATAGCCATCGCC 60.980 66.667 0.00 0.00 34.57 5.54
1141 1187 2.281761 CCACCATAGCCATCGCCC 60.282 66.667 0.00 0.00 34.57 6.13
1142 1188 2.281761 CACCATAGCCATCGCCCC 60.282 66.667 0.00 0.00 34.57 5.80
1143 1189 3.570212 ACCATAGCCATCGCCCCC 61.570 66.667 0.00 0.00 34.57 5.40
1144 1190 3.252284 CCATAGCCATCGCCCCCT 61.252 66.667 0.00 0.00 34.57 4.79
1145 1191 2.833913 CCATAGCCATCGCCCCCTT 61.834 63.158 0.00 0.00 34.57 3.95
1146 1192 1.302832 CATAGCCATCGCCCCCTTC 60.303 63.158 0.00 0.00 34.57 3.46
1147 1193 2.529744 ATAGCCATCGCCCCCTTCC 61.530 63.158 0.00 0.00 34.57 3.46
1150 1196 4.506255 CCATCGCCCCCTTCCACC 62.506 72.222 0.00 0.00 0.00 4.61
1151 1197 3.727258 CATCGCCCCCTTCCACCA 61.727 66.667 0.00 0.00 0.00 4.17
1152 1198 3.411517 ATCGCCCCCTTCCACCAG 61.412 66.667 0.00 0.00 0.00 4.00
1153 1199 3.943137 ATCGCCCCCTTCCACCAGA 62.943 63.158 0.00 0.00 0.00 3.86
1154 1200 4.101448 CGCCCCCTTCCACCAGAG 62.101 72.222 0.00 0.00 0.00 3.35
1155 1201 2.610859 GCCCCCTTCCACCAGAGA 60.611 66.667 0.00 0.00 0.00 3.10
1156 1202 2.674220 GCCCCCTTCCACCAGAGAG 61.674 68.421 0.00 0.00 0.00 3.20
1157 1203 2.674220 CCCCCTTCCACCAGAGAGC 61.674 68.421 0.00 0.00 0.00 4.09
1158 1204 1.614824 CCCCTTCCACCAGAGAGCT 60.615 63.158 0.00 0.00 0.00 4.09
1159 1205 1.204113 CCCCTTCCACCAGAGAGCTT 61.204 60.000 0.00 0.00 0.00 3.74
1160 1206 0.251634 CCCTTCCACCAGAGAGCTTC 59.748 60.000 0.00 0.00 0.00 3.86
1161 1207 0.251634 CCTTCCACCAGAGAGCTTCC 59.748 60.000 0.00 0.00 0.00 3.46
1162 1208 0.108424 CTTCCACCAGAGAGCTTCCG 60.108 60.000 0.00 0.00 0.00 4.30
1163 1209 0.541998 TTCCACCAGAGAGCTTCCGA 60.542 55.000 0.00 0.00 0.00 4.55
1164 1210 0.541998 TCCACCAGAGAGCTTCCGAA 60.542 55.000 0.00 0.00 0.00 4.30
1165 1211 0.108424 CCACCAGAGAGCTTCCGAAG 60.108 60.000 3.56 3.56 0.00 3.79
1175 1221 2.772739 CTTCCGAAGCACTCCCATG 58.227 57.895 0.00 0.00 0.00 3.66
1176 1222 0.745845 CTTCCGAAGCACTCCCATGG 60.746 60.000 4.14 4.14 0.00 3.66
1177 1223 2.819984 TTCCGAAGCACTCCCATGGC 62.820 60.000 6.09 0.00 0.00 4.40
1178 1224 2.270205 CGAAGCACTCCCATGGCT 59.730 61.111 6.09 0.00 40.14 4.75
1179 1225 1.817099 CGAAGCACTCCCATGGCTC 60.817 63.158 6.09 0.00 36.76 4.70
1180 1226 1.606531 GAAGCACTCCCATGGCTCT 59.393 57.895 6.09 0.00 36.76 4.09
1181 1227 0.747283 GAAGCACTCCCATGGCTCTG 60.747 60.000 6.09 1.10 36.76 3.35
1182 1228 2.827642 GCACTCCCATGGCTCTGC 60.828 66.667 6.09 8.10 0.00 4.26
1201 1247 4.792804 GCAGCCACAGCCTCCTCC 62.793 72.222 0.00 0.00 41.25 4.30
1202 1248 4.463879 CAGCCACAGCCTCCTCCG 62.464 72.222 0.00 0.00 41.25 4.63
1204 1250 4.459089 GCCACAGCCTCCTCCGTC 62.459 72.222 0.00 0.00 0.00 4.79
1205 1251 4.135153 CCACAGCCTCCTCCGTCG 62.135 72.222 0.00 0.00 0.00 5.12
1206 1252 3.374402 CACAGCCTCCTCCGTCGT 61.374 66.667 0.00 0.00 0.00 4.34
1207 1253 2.600769 ACAGCCTCCTCCGTCGTT 60.601 61.111 0.00 0.00 0.00 3.85
1208 1254 2.125912 CAGCCTCCTCCGTCGTTG 60.126 66.667 0.00 0.00 0.00 4.10
1209 1255 2.600769 AGCCTCCTCCGTCGTTGT 60.601 61.111 0.00 0.00 0.00 3.32
1210 1256 2.126031 GCCTCCTCCGTCGTTGTC 60.126 66.667 0.00 0.00 0.00 3.18
1211 1257 2.572284 CCTCCTCCGTCGTTGTCC 59.428 66.667 0.00 0.00 0.00 4.02
1212 1258 1.977544 CCTCCTCCGTCGTTGTCCT 60.978 63.158 0.00 0.00 0.00 3.85
1213 1259 1.507174 CTCCTCCGTCGTTGTCCTC 59.493 63.158 0.00 0.00 0.00 3.71
1214 1260 2.178521 CCTCCGTCGTTGTCCTCG 59.821 66.667 0.00 0.00 0.00 4.63
1215 1261 2.504244 CTCCGTCGTTGTCCTCGC 60.504 66.667 0.00 0.00 0.00 5.03
1216 1262 2.979197 CTCCGTCGTTGTCCTCGCT 61.979 63.158 0.00 0.00 0.00 4.93
1217 1263 2.504244 CCGTCGTTGTCCTCGCTC 60.504 66.667 0.00 0.00 0.00 5.03
1218 1264 2.254350 CGTCGTTGTCCTCGCTCA 59.746 61.111 0.00 0.00 0.00 4.26
1219 1265 1.154016 CGTCGTTGTCCTCGCTCAT 60.154 57.895 0.00 0.00 0.00 2.90
1220 1266 1.406219 CGTCGTTGTCCTCGCTCATG 61.406 60.000 0.00 0.00 0.00 3.07
1221 1267 1.078759 GTCGTTGTCCTCGCTCATGG 61.079 60.000 0.00 0.00 0.00 3.66
1222 1268 1.079819 CGTTGTCCTCGCTCATGGT 60.080 57.895 0.00 0.00 0.00 3.55
1223 1269 0.670546 CGTTGTCCTCGCTCATGGTT 60.671 55.000 0.00 0.00 0.00 3.67
1224 1270 0.798776 GTTGTCCTCGCTCATGGTTG 59.201 55.000 0.00 0.00 0.00 3.77
1225 1271 0.321564 TTGTCCTCGCTCATGGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
1226 1272 2.109126 GTCCTCGCTCATGGTTGGC 61.109 63.158 0.00 0.00 0.00 4.52
1227 1273 2.270205 CCTCGCTCATGGTTGGCT 59.730 61.111 0.00 0.00 0.00 4.75
1228 1274 1.817099 CCTCGCTCATGGTTGGCTC 60.817 63.158 0.00 0.00 0.00 4.70
1229 1275 1.078918 CTCGCTCATGGTTGGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
1230 1276 1.364626 CTCGCTCATGGTTGGCTCAC 61.365 60.000 0.00 0.00 0.00 3.51
1231 1277 2.401766 CGCTCATGGTTGGCTCACC 61.402 63.158 0.00 0.00 37.34 4.02
1232 1278 2.401766 GCTCATGGTTGGCTCACCG 61.402 63.158 0.00 0.00 40.09 4.94
1233 1279 1.296392 CTCATGGTTGGCTCACCGA 59.704 57.895 0.00 0.00 40.09 4.69
1234 1280 0.107508 CTCATGGTTGGCTCACCGAT 60.108 55.000 0.00 0.00 40.09 4.18
1235 1281 0.392863 TCATGGTTGGCTCACCGATG 60.393 55.000 0.00 7.05 40.09 3.84
1236 1282 1.077501 ATGGTTGGCTCACCGATGG 60.078 57.895 2.53 0.00 40.09 3.51
1237 1283 3.134127 GGTTGGCTCACCGATGGC 61.134 66.667 0.00 0.00 39.70 4.40
1238 1284 3.499737 GTTGGCTCACCGATGGCG 61.500 66.667 0.00 0.00 39.70 5.69
1239 1285 4.015406 TTGGCTCACCGATGGCGT 62.015 61.111 0.00 0.00 39.70 5.68
1240 1286 2.651105 TTGGCTCACCGATGGCGTA 61.651 57.895 0.00 0.00 39.70 4.42
1241 1287 1.966901 TTGGCTCACCGATGGCGTAT 61.967 55.000 0.00 0.00 39.70 3.06
1242 1288 1.227556 GGCTCACCGATGGCGTATT 60.228 57.895 0.00 0.00 35.23 1.89
1243 1289 1.222115 GGCTCACCGATGGCGTATTC 61.222 60.000 0.00 0.00 35.23 1.75
1244 1290 0.529773 GCTCACCGATGGCGTATTCA 60.530 55.000 0.00 0.00 35.23 2.57
1245 1291 1.873903 GCTCACCGATGGCGTATTCAT 60.874 52.381 0.00 0.00 35.23 2.57
1246 1292 2.061773 CTCACCGATGGCGTATTCATC 58.938 52.381 0.00 0.00 38.04 2.92
1253 1299 3.897325 GATGGCGTATTCATCGACTACA 58.103 45.455 0.00 0.00 37.22 2.74
1254 1300 3.786516 TGGCGTATTCATCGACTACAA 57.213 42.857 0.00 0.00 37.22 2.41
1255 1301 3.702330 TGGCGTATTCATCGACTACAAG 58.298 45.455 0.00 0.00 37.22 3.16
1256 1302 2.471743 GGCGTATTCATCGACTACAAGC 59.528 50.000 0.00 0.00 33.14 4.01
1257 1303 3.113322 GCGTATTCATCGACTACAAGCA 58.887 45.455 0.00 0.00 0.00 3.91
1258 1304 3.736252 GCGTATTCATCGACTACAAGCAT 59.264 43.478 0.00 0.00 0.00 3.79
1259 1305 4.375405 GCGTATTCATCGACTACAAGCATG 60.375 45.833 0.00 0.00 0.00 4.06
1260 1306 4.375405 CGTATTCATCGACTACAAGCATGC 60.375 45.833 10.51 10.51 0.00 4.06
1261 1307 1.939974 TCATCGACTACAAGCATGCC 58.060 50.000 15.66 0.00 0.00 4.40
1262 1308 1.206849 TCATCGACTACAAGCATGCCA 59.793 47.619 15.66 0.00 0.00 4.92
1263 1309 1.596260 CATCGACTACAAGCATGCCAG 59.404 52.381 15.66 9.93 0.00 4.85
1264 1310 0.108186 TCGACTACAAGCATGCCAGG 60.108 55.000 15.66 6.69 0.00 4.45
1265 1311 0.108186 CGACTACAAGCATGCCAGGA 60.108 55.000 15.66 2.42 0.00 3.86
1266 1312 1.661341 GACTACAAGCATGCCAGGAG 58.339 55.000 15.66 15.65 0.00 3.69
1267 1313 0.393537 ACTACAAGCATGCCAGGAGC 60.394 55.000 15.66 0.00 44.14 4.70
1268 1314 1.077501 TACAAGCATGCCAGGAGCC 60.078 57.895 15.66 0.00 42.71 4.70
1269 1315 1.851065 TACAAGCATGCCAGGAGCCA 61.851 55.000 15.66 0.00 42.71 4.75
1270 1316 2.044252 AAGCATGCCAGGAGCCAG 60.044 61.111 15.66 0.00 42.71 4.85
1271 1317 2.609534 AAGCATGCCAGGAGCCAGA 61.610 57.895 15.66 0.00 42.71 3.86
1272 1318 1.934459 AAGCATGCCAGGAGCCAGAT 61.934 55.000 15.66 0.00 42.71 2.90
1273 1319 2.194212 GCATGCCAGGAGCCAGATG 61.194 63.158 6.36 0.00 42.71 2.90
1274 1320 1.226542 CATGCCAGGAGCCAGATGT 59.773 57.895 0.00 0.00 42.71 3.06
1275 1321 0.395311 CATGCCAGGAGCCAGATGTT 60.395 55.000 0.00 0.00 42.71 2.71
1276 1322 0.395311 ATGCCAGGAGCCAGATGTTG 60.395 55.000 0.00 0.00 42.71 3.33
1277 1323 1.300963 GCCAGGAGCCAGATGTTGA 59.699 57.895 0.00 0.00 34.35 3.18
1278 1324 1.028868 GCCAGGAGCCAGATGTTGAC 61.029 60.000 0.00 0.00 34.35 3.18
1279 1325 0.325933 CCAGGAGCCAGATGTTGACA 59.674 55.000 0.00 0.00 0.00 3.58
1280 1326 1.446907 CAGGAGCCAGATGTTGACAC 58.553 55.000 0.00 0.00 0.00 3.67
1281 1327 0.036952 AGGAGCCAGATGTTGACACG 60.037 55.000 0.00 0.00 0.00 4.49
1282 1328 1.021390 GGAGCCAGATGTTGACACGG 61.021 60.000 0.00 0.00 0.00 4.94
1283 1329 1.003355 AGCCAGATGTTGACACGGG 60.003 57.895 0.00 0.00 0.00 5.28
1284 1330 2.690778 GCCAGATGTTGACACGGGC 61.691 63.158 10.20 10.20 34.21 6.13
1285 1331 2.390599 CCAGATGTTGACACGGGCG 61.391 63.158 0.00 0.00 0.00 6.13
1286 1332 1.374125 CAGATGTTGACACGGGCGA 60.374 57.895 0.00 0.00 0.00 5.54
1287 1333 1.374252 AGATGTTGACACGGGCGAC 60.374 57.895 0.00 0.00 0.00 5.19
1304 1350 4.785950 CGCGATCGTCTTCTTCCA 57.214 55.556 17.81 0.00 0.00 3.53
1354 1400 1.686587 TCTTCACGGAGCAGAGAAACA 59.313 47.619 0.00 0.00 0.00 2.83
1385 1431 3.878519 GCTCCCTCGTCGTCTCCG 61.879 72.222 0.00 0.00 0.00 4.63
1388 1434 2.745100 CCCTCGTCGTCTCCGTCA 60.745 66.667 0.00 0.00 35.01 4.35
1413 1459 0.103026 CCATCCGATCTGTCTTCGCA 59.897 55.000 0.00 0.00 35.31 5.10
1459 1505 1.410004 CTCCATGCCTCGTAACCCTA 58.590 55.000 0.00 0.00 0.00 3.53
1461 1507 2.368875 CTCCATGCCTCGTAACCCTATT 59.631 50.000 0.00 0.00 0.00 1.73
1478 1524 3.006110 CCTATTGGTTTCCTCGCCGTATA 59.994 47.826 0.00 0.00 0.00 1.47
1479 1525 3.764237 ATTGGTTTCCTCGCCGTATAT 57.236 42.857 0.00 0.00 0.00 0.86
1483 1529 2.035576 GGTTTCCTCGCCGTATATCAGT 59.964 50.000 0.00 0.00 0.00 3.41
1489 1535 2.293677 CTCGCCGTATATCAGTGTCCTT 59.706 50.000 0.00 0.00 0.00 3.36
1568 1614 4.704103 TCTGTCCGCCTCCAGCCT 62.704 66.667 0.00 0.00 38.78 4.58
1604 1650 1.962822 CTGCTCCACACACGCACAT 60.963 57.895 0.00 0.00 0.00 3.21
1610 1656 0.676466 CCACACACGCACATACCCAT 60.676 55.000 0.00 0.00 0.00 4.00
1614 1660 0.394216 ACACGCACATACCCATGCAT 60.394 50.000 0.00 0.00 42.17 3.96
1752 1806 2.028876 CACATCATGTGCACATCCCAT 58.971 47.619 29.23 17.71 41.89 4.00
1785 1839 4.338710 CCTTTTCCGCACCCCCGA 62.339 66.667 0.00 0.00 0.00 5.14
1854 1908 1.272490 TGAGAATCAGTCGTCCACCAC 59.728 52.381 0.00 0.00 42.56 4.16
1855 1909 1.272490 GAGAATCAGTCGTCCACCACA 59.728 52.381 0.00 0.00 33.17 4.17
1938 1993 2.166130 TAGCAGCGCAGTGGTTAGCA 62.166 55.000 11.47 0.00 0.00 3.49
2004 2063 7.321908 GTGGTACCCTTTTTCTTTGTTTTGTA 58.678 34.615 10.07 0.00 0.00 2.41
2029 2089 3.960102 TGAATGTTGTTCTTTTCCCAGCT 59.040 39.130 0.00 0.00 0.00 4.24
2036 2096 3.630312 TGTTCTTTTCCCAGCTACACAAC 59.370 43.478 0.00 0.00 0.00 3.32
2039 2099 3.135712 TCTTTTCCCAGCTACACAACAGA 59.864 43.478 0.00 0.00 0.00 3.41
2045 2105 0.320771 AGCTACACAACAGAAGCCGG 60.321 55.000 0.00 0.00 35.54 6.13
2046 2106 0.320421 GCTACACAACAGAAGCCGGA 60.320 55.000 5.05 0.00 0.00 5.14
2054 2119 2.041819 AGAAGCCGGACCCCCTAG 60.042 66.667 5.05 0.00 0.00 3.02
2059 2124 0.492276 AGCCGGACCCCCTAGATATT 59.508 55.000 5.05 0.00 0.00 1.28
2100 2165 1.203994 GTGGCTAGCAGTCTCGGTTTA 59.796 52.381 18.24 0.00 0.00 2.01
2123 2189 0.613777 GGAGAGGTTGTGGGTTCGAT 59.386 55.000 0.00 0.00 0.00 3.59
2193 2294 0.178068 GATTCCACTTCTGGCCGCTA 59.822 55.000 0.00 0.00 37.49 4.26
2292 3291 9.691362 AATTATAGTTTTGCCACTGTTTTGTAG 57.309 29.630 0.00 0.00 0.00 2.74
2298 3297 1.069906 GCCACTGTTTTGTAGTGCTCG 60.070 52.381 0.00 0.00 43.19 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.886542 ACCGCACCTTTGAATTTCCTC 59.113 47.619 0.00 0.00 0.00 3.71
1 2 1.613437 CACCGCACCTTTGAATTTCCT 59.387 47.619 0.00 0.00 0.00 3.36
2 3 1.611491 TCACCGCACCTTTGAATTTCC 59.389 47.619 0.00 0.00 0.00 3.13
4 5 2.627699 ACATCACCGCACCTTTGAATTT 59.372 40.909 0.00 0.00 0.00 1.82
5 6 2.030007 CACATCACCGCACCTTTGAATT 60.030 45.455 0.00 0.00 0.00 2.17
6 7 1.541147 CACATCACCGCACCTTTGAAT 59.459 47.619 0.00 0.00 0.00 2.57
7 8 0.950836 CACATCACCGCACCTTTGAA 59.049 50.000 0.00 0.00 0.00 2.69
8 9 0.107643 TCACATCACCGCACCTTTGA 59.892 50.000 0.00 0.00 0.00 2.69
9 10 1.135603 CATCACATCACCGCACCTTTG 60.136 52.381 0.00 0.00 0.00 2.77
10 11 1.167851 CATCACATCACCGCACCTTT 58.832 50.000 0.00 0.00 0.00 3.11
11 12 1.308069 GCATCACATCACCGCACCTT 61.308 55.000 0.00 0.00 0.00 3.50
12 13 1.746615 GCATCACATCACCGCACCT 60.747 57.895 0.00 0.00 0.00 4.00
13 14 2.764314 GGCATCACATCACCGCACC 61.764 63.158 0.00 0.00 0.00 5.01
14 15 2.764314 GGGCATCACATCACCGCAC 61.764 63.158 0.00 0.00 0.00 5.34
15 16 2.438254 GGGCATCACATCACCGCA 60.438 61.111 0.00 0.00 0.00 5.69
16 17 3.211963 GGGGCATCACATCACCGC 61.212 66.667 0.00 0.00 0.00 5.68
17 18 2.516930 GGGGGCATCACATCACCG 60.517 66.667 0.00 0.00 0.00 4.94
18 19 1.454479 CTGGGGGCATCACATCACC 60.454 63.158 0.00 0.00 0.00 4.02
19 20 0.749454 GTCTGGGGGCATCACATCAC 60.749 60.000 0.00 0.00 0.00 3.06
20 21 0.915872 AGTCTGGGGGCATCACATCA 60.916 55.000 0.00 0.00 0.00 3.07
21 22 0.465097 CAGTCTGGGGGCATCACATC 60.465 60.000 0.00 0.00 0.00 3.06
22 23 0.915872 TCAGTCTGGGGGCATCACAT 60.916 55.000 0.00 0.00 0.00 3.21
26 27 1.527844 GCATCAGTCTGGGGGCATC 60.528 63.158 0.00 0.00 0.00 3.91
34 35 1.070445 GGGATCTGGAGCATCAGTCTG 59.930 57.143 6.28 0.00 36.25 3.51
38 39 1.072015 GGAAGGGATCTGGAGCATCAG 59.928 57.143 0.00 0.51 36.25 2.90
39 40 1.135094 GGAAGGGATCTGGAGCATCA 58.865 55.000 0.00 0.00 36.25 3.07
42 43 1.600058 AATGGAAGGGATCTGGAGCA 58.400 50.000 0.00 0.00 0.00 4.26
46 47 8.416329 CAACTAAAATAAATGGAAGGGATCTGG 58.584 37.037 0.00 0.00 0.00 3.86
50 51 9.100197 ACAACAACTAAAATAAATGGAAGGGAT 57.900 29.630 0.00 0.00 0.00 3.85
76 78 6.495706 TGCAACAAACATAATAAACACACGA 58.504 32.000 0.00 0.00 0.00 4.35
168 172 7.936496 TGAACATGATGTAAGAAGCCAAATA 57.064 32.000 0.00 0.00 0.00 1.40
173 178 6.690194 AAGATGAACATGATGTAAGAAGCC 57.310 37.500 0.00 0.00 0.00 4.35
226 232 5.717119 ACAAAGCAAGATGATCATGGAAAC 58.283 37.500 14.30 0.00 0.00 2.78
227 233 5.988310 ACAAAGCAAGATGATCATGGAAA 57.012 34.783 14.30 0.00 0.00 3.13
228 234 5.988310 AACAAAGCAAGATGATCATGGAA 57.012 34.783 14.30 0.00 0.00 3.53
229 235 8.789762 CATATAACAAAGCAAGATGATCATGGA 58.210 33.333 14.30 0.00 0.00 3.41
230 236 7.541091 GCATATAACAAAGCAAGATGATCATGG 59.459 37.037 14.30 3.59 0.00 3.66
231 237 8.297426 AGCATATAACAAAGCAAGATGATCATG 58.703 33.333 14.30 1.04 0.00 3.07
232 238 8.405418 AGCATATAACAAAGCAAGATGATCAT 57.595 30.769 8.25 8.25 0.00 2.45
233 239 7.812690 AGCATATAACAAAGCAAGATGATCA 57.187 32.000 0.00 0.00 0.00 2.92
234 240 8.347771 TGAAGCATATAACAAAGCAAGATGATC 58.652 33.333 0.00 0.00 0.00 2.92
235 241 8.229253 TGAAGCATATAACAAAGCAAGATGAT 57.771 30.769 0.00 0.00 0.00 2.45
236 242 7.628769 TGAAGCATATAACAAAGCAAGATGA 57.371 32.000 0.00 0.00 0.00 2.92
237 243 8.132995 TCATGAAGCATATAACAAAGCAAGATG 58.867 33.333 0.00 0.00 0.00 2.90
238 244 8.229253 TCATGAAGCATATAACAAAGCAAGAT 57.771 30.769 0.00 0.00 0.00 2.40
239 245 7.628769 TCATGAAGCATATAACAAAGCAAGA 57.371 32.000 0.00 0.00 0.00 3.02
240 246 8.867112 AATCATGAAGCATATAACAAAGCAAG 57.133 30.769 0.00 0.00 0.00 4.01
241 247 9.656040 AAAATCATGAAGCATATAACAAAGCAA 57.344 25.926 0.00 0.00 0.00 3.91
273 296 5.449041 GCGATGCAATAAAATGACAAGAGGA 60.449 40.000 0.00 0.00 0.00 3.71
332 357 5.218885 TCACACAAGAACACACAACAAAAG 58.781 37.500 0.00 0.00 0.00 2.27
385 412 2.428171 GCTGGTATGTGCATGGTGAAAT 59.572 45.455 0.00 0.00 0.00 2.17
388 415 0.327591 TGCTGGTATGTGCATGGTGA 59.672 50.000 0.00 0.00 33.94 4.02
551 585 4.402474 CCAAAAGACTTGAAAACTGGAGGT 59.598 41.667 0.00 0.00 0.00 3.85
876 921 2.665165 CCATGCTGGCCTAATTACCAA 58.335 47.619 3.32 0.00 34.96 3.67
895 940 2.524148 AGGGGGTGCAAAACTGCC 60.524 61.111 0.00 0.00 0.00 4.85
918 964 3.397439 GAGAGAGGCTGCCAGGCA 61.397 66.667 22.65 15.23 44.19 4.75
926 972 2.370633 GGGAAGGGGAGAGAGGCT 59.629 66.667 0.00 0.00 0.00 4.58
927 973 2.770475 GGGGAAGGGGAGAGAGGC 60.770 72.222 0.00 0.00 0.00 4.70
934 980 0.198696 AGGAAGAAAGGGGAAGGGGA 59.801 55.000 0.00 0.00 0.00 4.81
939 985 1.132201 TGGAGGAGGAAGAAAGGGGAA 60.132 52.381 0.00 0.00 0.00 3.97
962 1008 5.140454 AGTTTTGCTATGTGAGGGTCTTTT 58.860 37.500 0.00 0.00 0.00 2.27
964 1010 4.373156 AGTTTTGCTATGTGAGGGTCTT 57.627 40.909 0.00 0.00 0.00 3.01
973 1019 4.463891 CCCTCATCCAAAGTTTTGCTATGT 59.536 41.667 13.29 0.00 36.86 2.29
976 1022 2.825532 GCCCTCATCCAAAGTTTTGCTA 59.174 45.455 0.00 0.00 36.86 3.49
979 1025 2.364970 TGTGCCCTCATCCAAAGTTTTG 59.635 45.455 0.00 0.00 37.90 2.44
1023 1069 1.461091 TTATAGGAGGAGCGGGCGTG 61.461 60.000 0.00 0.00 0.00 5.34
1024 1070 0.757935 TTTATAGGAGGAGCGGGCGT 60.758 55.000 0.00 0.00 0.00 5.68
1025 1071 0.038159 CTTTATAGGAGGAGCGGGCG 60.038 60.000 0.00 0.00 0.00 6.13
1026 1072 0.320858 GCTTTATAGGAGGAGCGGGC 60.321 60.000 0.00 0.00 0.00 6.13
1027 1073 0.321996 GGCTTTATAGGAGGAGCGGG 59.678 60.000 0.00 0.00 36.02 6.13
1028 1074 0.321996 GGGCTTTATAGGAGGAGCGG 59.678 60.000 0.00 0.00 36.02 5.52
1029 1075 0.321996 GGGGCTTTATAGGAGGAGCG 59.678 60.000 0.00 0.00 36.02 5.03
1030 1076 1.349357 CTGGGGCTTTATAGGAGGAGC 59.651 57.143 0.00 0.00 0.00 4.70
1031 1077 2.635427 GTCTGGGGCTTTATAGGAGGAG 59.365 54.545 0.00 0.00 0.00 3.69
1032 1078 2.690840 GTCTGGGGCTTTATAGGAGGA 58.309 52.381 0.00 0.00 0.00 3.71
1033 1079 1.344763 CGTCTGGGGCTTTATAGGAGG 59.655 57.143 0.00 0.00 0.00 4.30
1034 1080 1.344763 CCGTCTGGGGCTTTATAGGAG 59.655 57.143 0.00 0.00 0.00 3.69
1035 1081 1.420430 CCGTCTGGGGCTTTATAGGA 58.580 55.000 0.00 0.00 0.00 2.94
1047 1093 3.470888 CCTAGGGTGCCCGTCTGG 61.471 72.222 0.00 0.00 41.95 3.86
1048 1094 3.470888 CCCTAGGGTGCCCGTCTG 61.471 72.222 20.88 0.00 41.95 3.51
1065 1111 1.112950 CGGAGAGGGTAGAGGGAAAC 58.887 60.000 0.00 0.00 0.00 2.78
1066 1112 0.708802 ACGGAGAGGGTAGAGGGAAA 59.291 55.000 0.00 0.00 0.00 3.13
1067 1113 0.033405 CACGGAGAGGGTAGAGGGAA 60.033 60.000 0.00 0.00 0.00 3.97
1068 1114 1.613610 CACGGAGAGGGTAGAGGGA 59.386 63.158 0.00 0.00 0.00 4.20
1069 1115 2.128507 GCACGGAGAGGGTAGAGGG 61.129 68.421 0.00 0.00 0.00 4.30
1070 1116 2.128507 GGCACGGAGAGGGTAGAGG 61.129 68.421 0.00 0.00 0.00 3.69
1071 1117 3.527641 GGCACGGAGAGGGTAGAG 58.472 66.667 0.00 0.00 0.00 2.43
1089 1135 4.587189 CTACTAGGTGGCGGCGGC 62.587 72.222 27.76 27.76 38.90 6.53
1090 1136 3.912907 CCTACTAGGTGGCGGCGG 61.913 72.222 9.78 0.00 0.00 6.13
1099 1145 0.460311 CGTGGCTTGGACCTACTAGG 59.540 60.000 0.00 0.00 42.49 3.02
1100 1146 0.179108 GCGTGGCTTGGACCTACTAG 60.179 60.000 0.00 0.00 0.00 2.57
1101 1147 1.610554 GGCGTGGCTTGGACCTACTA 61.611 60.000 0.00 0.00 0.00 1.82
1102 1148 2.663196 GCGTGGCTTGGACCTACT 59.337 61.111 0.00 0.00 0.00 2.57
1103 1149 2.436115 GGCGTGGCTTGGACCTAC 60.436 66.667 0.00 0.00 0.00 3.18
1104 1150 2.925706 TGGCGTGGCTTGGACCTA 60.926 61.111 0.00 0.00 0.00 3.08
1105 1151 4.643387 GTGGCGTGGCTTGGACCT 62.643 66.667 0.00 0.00 0.00 3.85
1114 1160 4.769063 TATGGTGGCGTGGCGTGG 62.769 66.667 0.00 0.00 0.00 4.94
1115 1161 3.195002 CTATGGTGGCGTGGCGTG 61.195 66.667 0.00 0.00 0.00 5.34
1118 1164 4.794648 TGGCTATGGTGGCGTGGC 62.795 66.667 0.00 0.00 35.06 5.01
1119 1165 1.893808 GATGGCTATGGTGGCGTGG 60.894 63.158 0.00 0.00 35.06 4.94
1120 1166 2.246739 CGATGGCTATGGTGGCGTG 61.247 63.158 0.00 0.00 35.06 5.34
1121 1167 2.108976 CGATGGCTATGGTGGCGT 59.891 61.111 0.00 0.00 35.06 5.68
1122 1168 3.349006 GCGATGGCTATGGTGGCG 61.349 66.667 0.00 0.00 35.83 5.69
1123 1169 2.980233 GGCGATGGCTATGGTGGC 60.980 66.667 0.00 0.00 39.81 5.01
1124 1170 2.281761 GGGCGATGGCTATGGTGG 60.282 66.667 0.00 0.00 39.81 4.61
1125 1171 2.281761 GGGGCGATGGCTATGGTG 60.282 66.667 0.00 0.00 39.81 4.17
1126 1172 3.570212 GGGGGCGATGGCTATGGT 61.570 66.667 0.00 0.00 39.81 3.55
1127 1173 2.754664 GAAGGGGGCGATGGCTATGG 62.755 65.000 0.00 0.00 39.81 2.74
1128 1174 1.302832 GAAGGGGGCGATGGCTATG 60.303 63.158 0.00 0.00 39.81 2.23
1129 1175 2.529744 GGAAGGGGGCGATGGCTAT 61.530 63.158 0.00 0.00 39.81 2.97
1130 1176 3.168528 GGAAGGGGGCGATGGCTA 61.169 66.667 0.00 0.00 39.81 3.93
1133 1179 4.506255 GGTGGAAGGGGGCGATGG 62.506 72.222 0.00 0.00 0.00 3.51
1134 1180 3.704231 CTGGTGGAAGGGGGCGATG 62.704 68.421 0.00 0.00 0.00 3.84
1135 1181 3.411517 CTGGTGGAAGGGGGCGAT 61.412 66.667 0.00 0.00 0.00 4.58
1136 1182 4.649705 TCTGGTGGAAGGGGGCGA 62.650 66.667 0.00 0.00 0.00 5.54
1137 1183 4.101448 CTCTGGTGGAAGGGGGCG 62.101 72.222 0.00 0.00 0.00 6.13
1138 1184 2.610859 TCTCTGGTGGAAGGGGGC 60.611 66.667 0.00 0.00 0.00 5.80
1139 1185 2.674220 GCTCTCTGGTGGAAGGGGG 61.674 68.421 0.00 0.00 0.00 5.40
1140 1186 1.204113 AAGCTCTCTGGTGGAAGGGG 61.204 60.000 0.00 0.00 0.00 4.79
1141 1187 0.251634 GAAGCTCTCTGGTGGAAGGG 59.748 60.000 0.00 0.00 0.00 3.95
1142 1188 0.251634 GGAAGCTCTCTGGTGGAAGG 59.748 60.000 0.00 0.00 0.00 3.46
1143 1189 0.108424 CGGAAGCTCTCTGGTGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
1144 1190 0.541998 TCGGAAGCTCTCTGGTGGAA 60.542 55.000 0.00 0.00 0.00 3.53
1145 1191 0.541998 TTCGGAAGCTCTCTGGTGGA 60.542 55.000 0.00 0.00 0.00 4.02
1146 1192 0.108424 CTTCGGAAGCTCTCTGGTGG 60.108 60.000 4.57 0.00 0.00 4.61
1147 1193 3.432517 CTTCGGAAGCTCTCTGGTG 57.567 57.895 4.57 0.00 0.00 4.17
1157 1203 0.745845 CCATGGGAGTGCTTCGGAAG 60.746 60.000 13.39 13.39 0.00 3.46
1158 1204 1.299648 CCATGGGAGTGCTTCGGAA 59.700 57.895 2.85 0.00 0.00 4.30
1159 1205 2.989639 CCATGGGAGTGCTTCGGA 59.010 61.111 2.85 0.00 0.00 4.55
1160 1206 2.825836 GCCATGGGAGTGCTTCGG 60.826 66.667 15.13 0.00 0.00 4.30
1161 1207 1.817099 GAGCCATGGGAGTGCTTCG 60.817 63.158 15.13 0.00 34.99 3.79
1162 1208 0.747283 CAGAGCCATGGGAGTGCTTC 60.747 60.000 15.13 0.00 34.99 3.86
1163 1209 1.302285 CAGAGCCATGGGAGTGCTT 59.698 57.895 15.13 0.00 34.99 3.91
1164 1210 2.996395 CAGAGCCATGGGAGTGCT 59.004 61.111 15.13 3.08 38.24 4.40
1165 1211 2.827642 GCAGAGCCATGGGAGTGC 60.828 66.667 15.13 0.00 0.00 4.40
1184 1230 4.792804 GGAGGAGGCTGTGGCTGC 62.793 72.222 0.00 4.60 46.03 5.25
1185 1231 4.463879 CGGAGGAGGCTGTGGCTG 62.464 72.222 0.00 0.00 38.98 4.85
1187 1233 4.459089 GACGGAGGAGGCTGTGGC 62.459 72.222 0.00 0.00 37.82 5.01
1188 1234 4.135153 CGACGGAGGAGGCTGTGG 62.135 72.222 0.00 0.00 0.00 4.17
1189 1235 2.932234 AACGACGGAGGAGGCTGTG 61.932 63.158 0.00 0.00 0.00 3.66
1190 1236 2.600769 AACGACGGAGGAGGCTGT 60.601 61.111 0.00 0.00 0.00 4.40
1191 1237 2.125912 CAACGACGGAGGAGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
1192 1238 2.600769 ACAACGACGGAGGAGGCT 60.601 61.111 0.00 0.00 0.00 4.58
1193 1239 2.126031 GACAACGACGGAGGAGGC 60.126 66.667 0.00 0.00 0.00 4.70
1194 1240 1.935327 GAGGACAACGACGGAGGAGG 61.935 65.000 0.00 0.00 0.00 4.30
1195 1241 1.507174 GAGGACAACGACGGAGGAG 59.493 63.158 0.00 0.00 0.00 3.69
1196 1242 2.330372 CGAGGACAACGACGGAGGA 61.330 63.158 0.00 0.00 0.00 3.71
1197 1243 2.178521 CGAGGACAACGACGGAGG 59.821 66.667 0.00 0.00 0.00 4.30
1198 1244 2.504244 GCGAGGACAACGACGGAG 60.504 66.667 0.00 0.00 0.00 4.63
1199 1245 2.974489 GAGCGAGGACAACGACGGA 61.974 63.158 0.00 0.00 0.00 4.69
1200 1246 2.504244 GAGCGAGGACAACGACGG 60.504 66.667 0.00 0.00 0.00 4.79
1201 1247 1.154016 ATGAGCGAGGACAACGACG 60.154 57.895 0.00 0.00 0.00 5.12
1202 1248 1.078759 CCATGAGCGAGGACAACGAC 61.079 60.000 0.00 0.00 0.00 4.34
1203 1249 1.215382 CCATGAGCGAGGACAACGA 59.785 57.895 0.00 0.00 0.00 3.85
1204 1250 0.670546 AACCATGAGCGAGGACAACG 60.671 55.000 0.00 0.00 0.00 4.10
1205 1251 0.798776 CAACCATGAGCGAGGACAAC 59.201 55.000 0.00 0.00 0.00 3.32
1206 1252 0.321564 CCAACCATGAGCGAGGACAA 60.322 55.000 0.00 0.00 0.00 3.18
1207 1253 1.296392 CCAACCATGAGCGAGGACA 59.704 57.895 0.00 0.00 0.00 4.02
1208 1254 2.109126 GCCAACCATGAGCGAGGAC 61.109 63.158 0.00 0.00 0.00 3.85
1209 1255 2.244117 GAGCCAACCATGAGCGAGGA 62.244 60.000 0.00 0.00 0.00 3.71
1210 1256 1.817099 GAGCCAACCATGAGCGAGG 60.817 63.158 0.00 0.00 0.00 4.63
1211 1257 1.078918 TGAGCCAACCATGAGCGAG 60.079 57.895 0.00 0.00 0.00 5.03
1212 1258 1.375908 GTGAGCCAACCATGAGCGA 60.376 57.895 0.00 0.00 0.00 4.93
1213 1259 2.401766 GGTGAGCCAACCATGAGCG 61.402 63.158 0.00 0.00 40.22 5.03
1214 1260 2.401766 CGGTGAGCCAACCATGAGC 61.402 63.158 6.26 0.00 40.53 4.26
1215 1261 0.107508 ATCGGTGAGCCAACCATGAG 60.108 55.000 6.26 0.00 40.53 2.90
1216 1262 0.392863 CATCGGTGAGCCAACCATGA 60.393 55.000 6.26 0.00 40.53 3.07
1217 1263 1.378882 CCATCGGTGAGCCAACCATG 61.379 60.000 0.00 8.02 40.53 3.66
1218 1264 1.077501 CCATCGGTGAGCCAACCAT 60.078 57.895 0.00 0.00 40.53 3.55
1219 1265 2.350895 CCATCGGTGAGCCAACCA 59.649 61.111 0.00 0.00 40.53 3.67
1220 1266 3.134127 GCCATCGGTGAGCCAACC 61.134 66.667 0.00 0.00 36.82 3.77
1221 1267 2.845752 TACGCCATCGGTGAGCCAAC 62.846 60.000 0.00 0.00 40.69 3.77
1222 1268 1.966901 ATACGCCATCGGTGAGCCAA 61.967 55.000 0.00 0.00 40.69 4.52
1223 1269 1.966901 AATACGCCATCGGTGAGCCA 61.967 55.000 0.00 0.00 40.69 4.75
1224 1270 1.222115 GAATACGCCATCGGTGAGCC 61.222 60.000 0.00 0.00 40.69 4.70
1225 1271 0.529773 TGAATACGCCATCGGTGAGC 60.530 55.000 0.00 0.00 40.69 4.26
1226 1272 2.061773 GATGAATACGCCATCGGTGAG 58.938 52.381 0.00 0.00 40.69 3.51
1227 1273 2.148916 GATGAATACGCCATCGGTGA 57.851 50.000 0.00 0.00 40.69 4.02
1232 1278 3.897325 TGTAGTCGATGAATACGCCATC 58.103 45.455 0.00 0.00 36.13 3.51
1233 1279 4.299155 CTTGTAGTCGATGAATACGCCAT 58.701 43.478 0.00 0.00 36.13 4.40
1234 1280 3.702330 CTTGTAGTCGATGAATACGCCA 58.298 45.455 0.00 0.00 36.13 5.69
1235 1281 2.471743 GCTTGTAGTCGATGAATACGCC 59.528 50.000 0.00 0.00 36.13 5.68
1236 1282 3.113322 TGCTTGTAGTCGATGAATACGC 58.887 45.455 0.00 0.21 36.13 4.42
1237 1283 4.375405 GCATGCTTGTAGTCGATGAATACG 60.375 45.833 11.37 0.00 36.13 3.06
1238 1284 4.084328 GGCATGCTTGTAGTCGATGAATAC 60.084 45.833 18.92 0.00 34.30 1.89
1239 1285 4.058124 GGCATGCTTGTAGTCGATGAATA 58.942 43.478 18.92 0.00 0.00 1.75
1240 1286 2.874701 GGCATGCTTGTAGTCGATGAAT 59.125 45.455 18.92 0.00 0.00 2.57
1241 1287 2.279741 GGCATGCTTGTAGTCGATGAA 58.720 47.619 18.92 0.00 0.00 2.57
1242 1288 1.206849 TGGCATGCTTGTAGTCGATGA 59.793 47.619 18.92 0.00 0.00 2.92
1243 1289 1.596260 CTGGCATGCTTGTAGTCGATG 59.404 52.381 18.92 0.00 0.00 3.84
1244 1290 1.473965 CCTGGCATGCTTGTAGTCGAT 60.474 52.381 18.92 0.00 0.00 3.59
1245 1291 0.108186 CCTGGCATGCTTGTAGTCGA 60.108 55.000 18.92 0.00 0.00 4.20
1246 1292 0.108186 TCCTGGCATGCTTGTAGTCG 60.108 55.000 18.92 0.64 0.00 4.18
1247 1293 1.661341 CTCCTGGCATGCTTGTAGTC 58.339 55.000 18.92 0.00 0.00 2.59
1248 1294 0.393537 GCTCCTGGCATGCTTGTAGT 60.394 55.000 18.92 0.00 41.35 2.73
1249 1295 1.099879 GGCTCCTGGCATGCTTGTAG 61.100 60.000 18.92 11.43 44.01 2.74
1250 1296 1.077501 GGCTCCTGGCATGCTTGTA 60.078 57.895 18.92 0.33 44.01 2.41
1251 1297 2.362120 GGCTCCTGGCATGCTTGT 60.362 61.111 18.92 0.00 44.01 3.16
1252 1298 2.361992 TGGCTCCTGGCATGCTTG 60.362 61.111 18.92 10.41 44.10 4.01
1258 1304 1.001764 CAACATCTGGCTCCTGGCA 60.002 57.895 0.00 0.00 46.87 4.92
1259 1305 1.028868 GTCAACATCTGGCTCCTGGC 61.029 60.000 0.00 0.00 40.90 4.85
1260 1306 0.325933 TGTCAACATCTGGCTCCTGG 59.674 55.000 0.00 0.00 0.00 4.45
1261 1307 1.446907 GTGTCAACATCTGGCTCCTG 58.553 55.000 0.00 0.00 0.00 3.86
1262 1308 0.036952 CGTGTCAACATCTGGCTCCT 60.037 55.000 0.00 0.00 0.00 3.69
1263 1309 1.021390 CCGTGTCAACATCTGGCTCC 61.021 60.000 0.00 0.00 0.00 4.70
1264 1310 1.021390 CCCGTGTCAACATCTGGCTC 61.021 60.000 0.00 0.00 0.00 4.70
1265 1311 1.003355 CCCGTGTCAACATCTGGCT 60.003 57.895 0.00 0.00 0.00 4.75
1266 1312 2.690778 GCCCGTGTCAACATCTGGC 61.691 63.158 5.24 5.24 0.00 4.85
1267 1313 2.390599 CGCCCGTGTCAACATCTGG 61.391 63.158 0.00 0.00 0.00 3.86
1268 1314 1.374125 TCGCCCGTGTCAACATCTG 60.374 57.895 0.00 0.00 0.00 2.90
1269 1315 1.374252 GTCGCCCGTGTCAACATCT 60.374 57.895 0.00 0.00 0.00 2.90
1270 1316 2.726691 CGTCGCCCGTGTCAACATC 61.727 63.158 0.00 0.00 0.00 3.06
1271 1317 2.736995 CGTCGCCCGTGTCAACAT 60.737 61.111 0.00 0.00 0.00 2.71
1287 1333 1.464429 CGTGGAAGAAGACGATCGCG 61.464 60.000 16.60 0.00 44.79 5.87
1288 1334 0.179171 TCGTGGAAGAAGACGATCGC 60.179 55.000 16.60 8.27 39.59 4.58
1289 1335 1.135774 TGTCGTGGAAGAAGACGATCG 60.136 52.381 14.88 14.88 45.62 3.69
1290 1336 2.631418 TGTCGTGGAAGAAGACGATC 57.369 50.000 0.00 0.00 45.62 3.69
1291 1337 2.159226 GGATGTCGTGGAAGAAGACGAT 60.159 50.000 0.00 0.00 45.62 3.73
1292 1338 1.201647 GGATGTCGTGGAAGAAGACGA 59.798 52.381 0.00 0.00 42.10 4.20
1293 1339 1.202582 AGGATGTCGTGGAAGAAGACG 59.797 52.381 0.00 0.00 35.96 4.18
1294 1340 2.494073 AGAGGATGTCGTGGAAGAAGAC 59.506 50.000 0.00 0.00 33.95 3.01
1295 1341 2.808919 AGAGGATGTCGTGGAAGAAGA 58.191 47.619 0.00 0.00 0.00 2.87
1300 1346 2.094700 CGAAGAAGAGGATGTCGTGGAA 60.095 50.000 0.00 0.00 0.00 3.53
1304 1350 2.438411 AGACGAAGAAGAGGATGTCGT 58.562 47.619 0.00 0.00 46.77 4.34
1309 1355 4.263435 ACGAAGTAGACGAAGAAGAGGAT 58.737 43.478 0.00 0.00 41.94 3.24
1354 1400 0.107945 GGGAGCTCGCTGAACTTGAT 60.108 55.000 22.62 0.00 0.00 2.57
1380 1426 1.815795 CGGATGGAGAGATGACGGAGA 60.816 57.143 0.00 0.00 0.00 3.71
1385 1431 2.890311 ACAGATCGGATGGAGAGATGAC 59.110 50.000 0.00 0.00 0.00 3.06
1388 1434 3.524095 AGACAGATCGGATGGAGAGAT 57.476 47.619 0.00 0.00 0.00 2.75
1459 1505 3.070446 TGATATACGGCGAGGAAACCAAT 59.930 43.478 16.62 0.00 0.00 3.16
1461 1507 2.033372 TGATATACGGCGAGGAAACCA 58.967 47.619 16.62 0.00 0.00 3.67
1478 1524 1.546476 GGACACGAGAAGGACACTGAT 59.454 52.381 0.00 0.00 0.00 2.90
1479 1525 0.959553 GGACACGAGAAGGACACTGA 59.040 55.000 0.00 0.00 0.00 3.41
1483 1529 4.486887 TCGGACACGAGAAGGACA 57.513 55.556 0.00 0.00 45.59 4.02
1522 1568 1.372582 GCTCTGTTTCATCCGCATGA 58.627 50.000 0.00 0.00 37.24 3.07
1604 1650 1.819208 GCACTCGCATGCATGGGTA 60.819 57.895 34.44 23.02 45.39 3.69
1850 1904 0.555769 TGGGGCTTTCTTCTTGTGGT 59.444 50.000 0.00 0.00 0.00 4.16
1854 1908 0.251519 AGGCTGGGGCTTTCTTCTTG 60.252 55.000 0.00 0.00 33.67 3.02
1855 1909 0.484655 AAGGCTGGGGCTTTCTTCTT 59.515 50.000 0.47 0.00 46.16 2.52
1902 1957 4.876107 GCTGCTACAATACTGGTGTACAAT 59.124 41.667 0.00 0.00 0.00 2.71
1938 1993 1.523711 CCGGATATGCGCAAGGTGT 60.524 57.895 17.11 0.00 38.28 4.16
1946 2001 1.219124 CCAGATCCCCGGATATGCG 59.781 63.158 9.98 9.98 41.09 4.73
2004 2063 5.759763 GCTGGGAAAAGAACAACATTCAAAT 59.240 36.000 0.00 0.00 0.00 2.32
2029 2089 0.034337 GGTCCGGCTTCTGTTGTGTA 59.966 55.000 0.00 0.00 0.00 2.90
2036 2096 2.365105 TAGGGGGTCCGGCTTCTG 60.365 66.667 0.00 0.00 38.33 3.02
2039 2099 0.492276 ATATCTAGGGGGTCCGGCTT 59.508 55.000 0.00 0.00 38.33 4.35
2045 2105 5.131475 TGGTGTTTGTAATATCTAGGGGGTC 59.869 44.000 0.00 0.00 0.00 4.46
2046 2106 5.041015 TGGTGTTTGTAATATCTAGGGGGT 58.959 41.667 0.00 0.00 0.00 4.95
2054 2119 4.211374 CGCTAGCCTGGTGTTTGTAATATC 59.789 45.833 9.66 0.00 0.00 1.63
2059 2124 0.672401 GCGCTAGCCTGGTGTTTGTA 60.672 55.000 9.66 0.00 37.42 2.41
2100 2165 0.549469 AACCCACAACCTCTCCGTTT 59.451 50.000 0.00 0.00 0.00 3.60
2123 2189 1.967343 AAAAAGGGGGTGCCTGGGAA 61.967 55.000 0.00 0.00 0.00 3.97
2193 2294 1.065126 GGGCCAGAAGCATTAGAGTGT 60.065 52.381 4.39 0.00 46.50 3.55
2292 3291 5.869344 TGCATGGATATTTAGATACGAGCAC 59.131 40.000 0.00 0.00 0.00 4.40
2298 3297 8.969260 TCATGGATGCATGGATATTTAGATAC 57.031 34.615 24.85 0.00 33.61 2.24
2374 3527 9.829507 AACATTTTAAACATGGATCAAAGTTGA 57.170 25.926 0.00 0.00 42.14 3.18
2401 3554 7.798596 TGTCATTTATGCAACACCAAATTTT 57.201 28.000 0.00 0.00 0.00 1.82
2408 3561 7.881643 TTTAACATGTCATTTATGCAACACC 57.118 32.000 0.00 0.00 0.00 4.16
2411 3564 8.934825 ACCATTTTAACATGTCATTTATGCAAC 58.065 29.630 0.00 0.00 0.00 4.17
2455 3622 9.754382 AAGTTTATTTAATTCGGAGCTACGATA 57.246 29.630 24.23 10.01 43.11 2.92
2457 3624 8.483307 AAAGTTTATTTAATTCGGAGCTACGA 57.517 30.769 19.35 19.35 41.76 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.