Multiple sequence alignment - TraesCS5A01G089100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G089100 chr5A 100.000 2916 0 0 1 2916 119228409 119225494 0.000000e+00 5385.0
1 TraesCS5A01G089100 chr5A 88.453 433 37 6 1427 1859 701226524 701226943 7.210000e-141 510.0
2 TraesCS5A01G089100 chr5A 90.071 141 12 2 38 177 194977242 194977381 6.420000e-42 182.0
3 TraesCS5A01G089100 chr5A 89.362 141 13 2 38 177 194936499 194936638 2.990000e-40 176.0
4 TraesCS5A01G089100 chr5A 92.857 56 1 1 2384 2439 119225969 119225917 8.660000e-11 78.7
5 TraesCS5A01G089100 chr5A 92.857 56 1 1 2441 2493 119226026 119225971 8.660000e-11 78.7
6 TraesCS5A01G089100 chr5B 93.663 647 37 3 1794 2439 124773741 124773098 0.000000e+00 965.0
7 TraesCS5A01G089100 chr5B 86.920 841 44 34 471 1280 124775184 124774379 0.000000e+00 883.0
8 TraesCS5A01G089100 chr5B 90.798 489 22 8 2441 2916 124773153 124772675 1.470000e-177 632.0
9 TraesCS5A01G089100 chr5B 88.023 526 36 14 1336 1835 124774290 124773766 5.380000e-167 597.0
10 TraesCS5A01G089100 chr5B 91.748 206 15 2 185 388 124775400 124775195 4.760000e-73 285.0
11 TraesCS5A01G089100 chr5B 89.928 139 14 0 39 177 179661998 179662136 2.310000e-41 180.0
12 TraesCS5A01G089100 chr5B 97.674 43 0 1 1359 1400 677647950 677647908 4.030000e-09 73.1
13 TraesCS5A01G089100 chr5D 93.161 658 31 7 1794 2439 114013025 114012370 0.000000e+00 953.0
14 TraesCS5A01G089100 chr5D 89.145 737 32 14 569 1302 114014406 114013715 0.000000e+00 874.0
15 TraesCS5A01G089100 chr5D 88.492 504 35 9 1353 1834 114013620 114013118 3.240000e-164 588.0
16 TraesCS5A01G089100 chr5D 88.166 507 24 12 2441 2914 114012427 114011924 3.260000e-159 571.0
17 TraesCS5A01G089100 chr5D 90.000 390 25 6 176 555 114015022 114014637 2.610000e-135 492.0
18 TraesCS5A01G089100 chr3B 91.429 140 12 0 38 177 353878180 353878041 2.970000e-45 193.0
19 TraesCS5A01G089100 chr3B 84.615 65 10 0 2750 2814 757955694 757955758 6.750000e-07 65.8
20 TraesCS5A01G089100 chr4B 90.000 140 14 0 38 177 668083680 668083819 6.420000e-42 182.0
21 TraesCS5A01G089100 chr4B 96.154 52 2 0 2810 2861 406677792 406677741 5.180000e-13 86.1
22 TraesCS5A01G089100 chr2A 89.928 139 14 0 38 176 658866410 658866548 2.310000e-41 180.0
23 TraesCS5A01G089100 chr2A 96.154 52 2 0 2810 2861 659894363 659894414 5.180000e-13 86.1
24 TraesCS5A01G089100 chr6B 89.286 140 15 0 38 177 473510067 473510206 2.990000e-40 176.0
25 TraesCS5A01G089100 chr7D 87.013 154 20 0 1404 1557 566041063 566041216 1.070000e-39 174.0
26 TraesCS5A01G089100 chr7D 91.781 73 5 1 1408 1480 34871041 34871112 1.850000e-17 100.0
27 TraesCS5A01G089100 chr7D 93.846 65 4 0 986 1050 635503182 635503246 6.650000e-17 99.0
28 TraesCS5A01G089100 chr7D 90.667 75 2 3 1336 1406 635503817 635503890 8.600000e-16 95.3
29 TraesCS5A01G089100 chr2B 88.356 146 16 1 38 183 782983676 782983532 1.070000e-39 174.0
30 TraesCS5A01G089100 chr2B 96.154 52 2 0 2810 2861 607540310 607540361 5.180000e-13 86.1
31 TraesCS5A01G089100 chr7B 88.194 144 17 0 38 181 734730764 734730907 3.860000e-39 172.0
32 TraesCS5A01G089100 chr7B 96.774 62 2 0 989 1050 740568988 740568927 1.430000e-18 104.0
33 TraesCS5A01G089100 chr7B 93.846 65 3 1 989 1053 740627279 740627216 2.390000e-16 97.1
34 TraesCS5A01G089100 chr7B 94.915 59 3 0 992 1050 740513982 740513924 3.090000e-15 93.5
35 TraesCS5A01G089100 chr7B 91.304 69 3 2 1336 1401 740513310 740513242 1.110000e-14 91.6
36 TraesCS5A01G089100 chr7B 91.803 61 1 3 1343 1400 736286063 736286004 6.700000e-12 82.4
37 TraesCS5A01G089100 chr7B 92.727 55 2 2 1353 1406 740666708 740666655 8.660000e-11 78.7
38 TraesCS5A01G089100 chr7A 89.333 75 3 3 1336 1406 730513551 730513478 4.000000e-14 89.8
39 TraesCS5A01G089100 chr6D 97.872 47 0 1 2811 2857 97784046 97784091 2.410000e-11 80.5
40 TraesCS5A01G089100 chr4D 94.231 52 3 0 2812 2863 327379555 327379504 2.410000e-11 80.5
41 TraesCS5A01G089100 chr4A 95.918 49 2 0 2812 2860 143701462 143701510 2.410000e-11 80.5
42 TraesCS5A01G089100 chr3D 92.857 56 2 2 2810 2863 437356588 437356643 2.410000e-11 80.5
43 TraesCS5A01G089100 chr2D 94.118 51 3 0 2810 2860 506399567 506399517 8.660000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G089100 chr5A 119225494 119228409 2915 True 1847.466667 5385 95.2380 1 2916 3 chr5A.!!$R1 2915
1 TraesCS5A01G089100 chr5B 124772675 124775400 2725 True 672.400000 965 90.2304 185 2916 5 chr5B.!!$R2 2731
2 TraesCS5A01G089100 chr5D 114011924 114015022 3098 True 695.600000 953 89.7928 176 2914 5 chr5D.!!$R1 2738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1169 0.037326 TCCACGCCAAGAGTAGCAAG 60.037 55.0 0.00 0.0 0.00 4.01 F
1317 1591 0.394938 TGTAAGCCTCGGCAACAAGA 59.605 50.0 11.02 0.0 44.88 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2089 0.102300 AGTTTGCGTTGGGCTTGAAC 59.898 50.0 0.0 0.0 44.05 3.18 R
2158 2640 0.310854 GCAGAAGGGAACAAACCACG 59.689 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.807649 ATTAATTGCCTCTGTTTCAATACATTC 57.192 29.630 0.00 0.00 30.98 2.67
28 29 7.472334 AATTGCCTCTGTTTCAATACATTCT 57.528 32.000 0.00 0.00 30.98 2.40
29 30 8.579850 AATTGCCTCTGTTTCAATACATTCTA 57.420 30.769 0.00 0.00 30.98 2.10
30 31 7.994425 TTGCCTCTGTTTCAATACATTCTAA 57.006 32.000 0.00 0.00 0.00 2.10
31 32 8.579850 TTGCCTCTGTTTCAATACATTCTAAT 57.420 30.769 0.00 0.00 0.00 1.73
32 33 9.679661 TTGCCTCTGTTTCAATACATTCTAATA 57.320 29.630 0.00 0.00 0.00 0.98
33 34 9.679661 TGCCTCTGTTTCAATACATTCTAATAA 57.320 29.630 0.00 0.00 0.00 1.40
66 67 4.338379 GGTATAGCCTAGTGGTGGAAAG 57.662 50.000 0.00 0.00 35.27 2.62
67 68 3.071167 GGTATAGCCTAGTGGTGGAAAGG 59.929 52.174 0.00 0.00 35.27 3.11
68 69 1.580059 TAGCCTAGTGGTGGAAAGGG 58.420 55.000 0.00 0.00 35.27 3.95
69 70 1.208165 AGCCTAGTGGTGGAAAGGGG 61.208 60.000 0.00 0.00 35.27 4.79
70 71 1.498176 GCCTAGTGGTGGAAAGGGGT 61.498 60.000 0.00 0.00 35.27 4.95
71 72 1.073098 CCTAGTGGTGGAAAGGGGTT 58.927 55.000 0.00 0.00 0.00 4.11
72 73 1.271926 CCTAGTGGTGGAAAGGGGTTG 60.272 57.143 0.00 0.00 0.00 3.77
73 74 1.702957 CTAGTGGTGGAAAGGGGTTGA 59.297 52.381 0.00 0.00 0.00 3.18
74 75 1.158007 AGTGGTGGAAAGGGGTTGAT 58.842 50.000 0.00 0.00 0.00 2.57
75 76 1.203050 AGTGGTGGAAAGGGGTTGATG 60.203 52.381 0.00 0.00 0.00 3.07
76 77 0.856982 TGGTGGAAAGGGGTTGATGT 59.143 50.000 0.00 0.00 0.00 3.06
77 78 1.203001 TGGTGGAAAGGGGTTGATGTC 60.203 52.381 0.00 0.00 0.00 3.06
78 79 1.075536 GGTGGAAAGGGGTTGATGTCT 59.924 52.381 0.00 0.00 0.00 3.41
79 80 2.490902 GGTGGAAAGGGGTTGATGTCTT 60.491 50.000 0.00 0.00 0.00 3.01
80 81 3.230976 GTGGAAAGGGGTTGATGTCTTT 58.769 45.455 0.00 0.00 32.84 2.52
81 82 3.641436 GTGGAAAGGGGTTGATGTCTTTT 59.359 43.478 0.00 0.00 30.64 2.27
82 83 3.895041 TGGAAAGGGGTTGATGTCTTTTC 59.105 43.478 0.00 0.00 30.64 2.29
83 84 3.895041 GGAAAGGGGTTGATGTCTTTTCA 59.105 43.478 0.00 0.00 30.64 2.69
84 85 4.262036 GGAAAGGGGTTGATGTCTTTTCAC 60.262 45.833 0.00 0.00 30.64 3.18
85 86 2.876581 AGGGGTTGATGTCTTTTCACC 58.123 47.619 0.00 0.00 0.00 4.02
86 87 1.893137 GGGGTTGATGTCTTTTCACCC 59.107 52.381 0.00 0.00 35.46 4.61
87 88 2.593026 GGGTTGATGTCTTTTCACCCA 58.407 47.619 0.03 0.00 35.87 4.51
88 89 2.296190 GGGTTGATGTCTTTTCACCCAC 59.704 50.000 0.03 0.00 35.87 4.61
89 90 2.296190 GGTTGATGTCTTTTCACCCACC 59.704 50.000 0.00 0.00 0.00 4.61
90 91 2.286365 TGATGTCTTTTCACCCACCC 57.714 50.000 0.00 0.00 0.00 4.61
91 92 1.496857 TGATGTCTTTTCACCCACCCA 59.503 47.619 0.00 0.00 0.00 4.51
92 93 2.162681 GATGTCTTTTCACCCACCCAG 58.837 52.381 0.00 0.00 0.00 4.45
93 94 0.184933 TGTCTTTTCACCCACCCAGG 59.815 55.000 0.00 0.00 37.03 4.45
94 95 0.185175 GTCTTTTCACCCACCCAGGT 59.815 55.000 0.00 0.00 42.40 4.00
95 96 0.930726 TCTTTTCACCCACCCAGGTT 59.069 50.000 0.00 0.00 38.39 3.50
96 97 1.289530 TCTTTTCACCCACCCAGGTTT 59.710 47.619 0.00 0.00 38.39 3.27
97 98 2.514582 TCTTTTCACCCACCCAGGTTTA 59.485 45.455 0.00 0.00 38.39 2.01
98 99 3.052793 TCTTTTCACCCACCCAGGTTTAA 60.053 43.478 0.00 0.00 38.39 1.52
99 100 2.668144 TTCACCCACCCAGGTTTAAG 57.332 50.000 0.00 0.00 38.39 1.85
100 101 0.774908 TCACCCACCCAGGTTTAAGG 59.225 55.000 0.00 0.00 38.39 2.69
101 102 0.898326 CACCCACCCAGGTTTAAGGC 60.898 60.000 0.00 0.00 38.39 4.35
102 103 1.365105 ACCCACCCAGGTTTAAGGCA 61.365 55.000 0.00 0.00 36.44 4.75
103 104 0.041090 CCCACCCAGGTTTAAGGCAT 59.959 55.000 0.00 0.00 34.66 4.40
104 105 1.185315 CCACCCAGGTTTAAGGCATG 58.815 55.000 0.00 0.00 0.00 4.06
105 106 1.272425 CCACCCAGGTTTAAGGCATGA 60.272 52.381 0.00 0.00 0.00 3.07
106 107 2.624029 CCACCCAGGTTTAAGGCATGAT 60.624 50.000 0.00 0.00 0.00 2.45
107 108 3.372566 CCACCCAGGTTTAAGGCATGATA 60.373 47.826 0.00 0.00 0.00 2.15
108 109 3.632145 CACCCAGGTTTAAGGCATGATAC 59.368 47.826 0.00 0.00 0.00 2.24
109 110 3.527665 ACCCAGGTTTAAGGCATGATACT 59.472 43.478 0.00 0.00 0.00 2.12
110 111 4.017499 ACCCAGGTTTAAGGCATGATACTT 60.017 41.667 0.00 0.00 0.00 2.24
111 112 4.339247 CCCAGGTTTAAGGCATGATACTTG 59.661 45.833 0.00 0.00 0.00 3.16
112 113 4.202050 CCAGGTTTAAGGCATGATACTTGC 60.202 45.833 0.00 0.00 39.41 4.01
113 114 4.398988 CAGGTTTAAGGCATGATACTTGCA 59.601 41.667 0.00 0.00 41.95 4.08
114 115 5.016173 AGGTTTAAGGCATGATACTTGCAA 58.984 37.500 0.00 0.00 41.95 4.08
115 116 5.658190 AGGTTTAAGGCATGATACTTGCAAT 59.342 36.000 0.00 0.00 41.95 3.56
116 117 6.155049 AGGTTTAAGGCATGATACTTGCAATT 59.845 34.615 0.00 0.00 41.95 2.32
117 118 6.818142 GGTTTAAGGCATGATACTTGCAATTT 59.182 34.615 0.00 0.00 41.95 1.82
118 119 7.201548 GGTTTAAGGCATGATACTTGCAATTTG 60.202 37.037 0.00 0.00 41.95 2.32
119 120 4.395959 AGGCATGATACTTGCAATTTGG 57.604 40.909 0.00 0.00 41.95 3.28
120 121 4.025360 AGGCATGATACTTGCAATTTGGA 58.975 39.130 0.00 0.00 41.95 3.53
121 122 4.652421 AGGCATGATACTTGCAATTTGGAT 59.348 37.500 0.00 0.00 41.95 3.41
122 123 5.129815 AGGCATGATACTTGCAATTTGGATT 59.870 36.000 0.00 0.00 41.95 3.01
123 124 5.464389 GGCATGATACTTGCAATTTGGATTC 59.536 40.000 0.00 0.00 41.95 2.52
124 125 5.174398 GCATGATACTTGCAATTTGGATTCG 59.826 40.000 0.00 0.00 39.90 3.34
125 126 5.895636 TGATACTTGCAATTTGGATTCGT 57.104 34.783 0.00 0.00 0.00 3.85
126 127 6.266168 TGATACTTGCAATTTGGATTCGTT 57.734 33.333 0.00 0.00 0.00 3.85
127 128 6.092092 TGATACTTGCAATTTGGATTCGTTG 58.908 36.000 0.00 0.00 0.00 4.10
128 129 3.059166 ACTTGCAATTTGGATTCGTTGC 58.941 40.909 0.00 2.25 45.27 4.17
131 132 1.726248 GCAATTTGGATTCGTTGCACC 59.274 47.619 4.26 0.00 44.63 5.01
132 133 2.865670 GCAATTTGGATTCGTTGCACCA 60.866 45.455 4.26 0.00 44.63 4.17
133 134 3.388308 CAATTTGGATTCGTTGCACCAA 58.612 40.909 0.31 0.31 40.05 3.67
134 135 3.959535 ATTTGGATTCGTTGCACCAAT 57.040 38.095 5.16 0.00 41.14 3.16
135 136 3.742433 TTTGGATTCGTTGCACCAATT 57.258 38.095 5.16 0.00 41.14 2.32
136 137 4.855715 TTTGGATTCGTTGCACCAATTA 57.144 36.364 5.16 0.00 41.14 1.40
137 138 5.398603 TTTGGATTCGTTGCACCAATTAT 57.601 34.783 5.16 0.00 41.14 1.28
138 139 6.516739 TTTGGATTCGTTGCACCAATTATA 57.483 33.333 5.16 0.00 41.14 0.98
139 140 5.493133 TGGATTCGTTGCACCAATTATAC 57.507 39.130 0.00 0.00 0.00 1.47
140 141 5.189928 TGGATTCGTTGCACCAATTATACT 58.810 37.500 0.00 0.00 0.00 2.12
141 142 5.295787 TGGATTCGTTGCACCAATTATACTC 59.704 40.000 0.00 0.00 0.00 2.59
142 143 5.527582 GGATTCGTTGCACCAATTATACTCT 59.472 40.000 0.00 0.00 0.00 3.24
143 144 6.704493 GGATTCGTTGCACCAATTATACTCTA 59.296 38.462 0.00 0.00 0.00 2.43
144 145 7.225931 GGATTCGTTGCACCAATTATACTCTAA 59.774 37.037 0.00 0.00 0.00 2.10
145 146 7.534085 TTCGTTGCACCAATTATACTCTAAG 57.466 36.000 0.00 0.00 0.00 2.18
146 147 6.046593 TCGTTGCACCAATTATACTCTAAGG 58.953 40.000 0.00 0.00 0.00 2.69
147 148 5.236478 CGTTGCACCAATTATACTCTAAGGG 59.764 44.000 0.00 0.00 0.00 3.95
148 149 4.714632 TGCACCAATTATACTCTAAGGGC 58.285 43.478 0.00 0.00 0.00 5.19
149 150 4.072839 GCACCAATTATACTCTAAGGGCC 58.927 47.826 0.00 0.00 0.00 5.80
150 151 4.202472 GCACCAATTATACTCTAAGGGCCT 60.202 45.833 0.00 0.00 0.00 5.19
151 152 5.552178 CACCAATTATACTCTAAGGGCCTC 58.448 45.833 6.46 0.00 0.00 4.70
152 153 5.308237 CACCAATTATACTCTAAGGGCCTCT 59.692 44.000 6.46 0.00 0.00 3.69
153 154 5.544562 ACCAATTATACTCTAAGGGCCTCTC 59.455 44.000 6.46 0.00 0.00 3.20
154 155 5.782845 CCAATTATACTCTAAGGGCCTCTCT 59.217 44.000 6.46 0.00 0.00 3.10
155 156 6.271159 CCAATTATACTCTAAGGGCCTCTCTT 59.729 42.308 6.46 0.00 0.00 2.85
156 157 7.455008 CCAATTATACTCTAAGGGCCTCTCTTA 59.545 40.741 6.46 0.78 0.00 2.10
157 158 8.308207 CAATTATACTCTAAGGGCCTCTCTTAC 58.692 40.741 6.46 0.00 0.00 2.34
158 159 3.759815 ACTCTAAGGGCCTCTCTTACA 57.240 47.619 6.46 0.00 0.00 2.41
159 160 3.637769 ACTCTAAGGGCCTCTCTTACAG 58.362 50.000 6.46 1.89 0.00 2.74
160 161 3.011934 ACTCTAAGGGCCTCTCTTACAGT 59.988 47.826 6.46 2.56 0.00 3.55
161 162 3.633418 TCTAAGGGCCTCTCTTACAGTC 58.367 50.000 6.46 0.00 0.00 3.51
162 163 2.632763 AAGGGCCTCTCTTACAGTCT 57.367 50.000 6.46 0.00 0.00 3.24
163 164 2.632763 AGGGCCTCTCTTACAGTCTT 57.367 50.000 0.00 0.00 0.00 3.01
164 165 2.462723 AGGGCCTCTCTTACAGTCTTC 58.537 52.381 0.00 0.00 0.00 2.87
165 166 1.483004 GGGCCTCTCTTACAGTCTTCC 59.517 57.143 0.84 0.00 0.00 3.46
166 167 2.462723 GGCCTCTCTTACAGTCTTCCT 58.537 52.381 0.00 0.00 0.00 3.36
215 216 3.119193 CATTGTGTATGGCCCCGC 58.881 61.111 0.00 0.00 0.00 6.13
301 302 9.678941 GGTTAACTTGTTTCTGAAATTTCTAGG 57.321 33.333 18.64 9.29 0.00 3.02
329 330 0.321653 AAATCTTTGACGAGCCGCCT 60.322 50.000 0.00 0.00 0.00 5.52
331 332 0.321653 ATCTTTGACGAGCCGCCTTT 60.322 50.000 0.00 0.00 0.00 3.11
332 333 0.949105 TCTTTGACGAGCCGCCTTTC 60.949 55.000 0.00 0.00 0.00 2.62
333 334 0.951040 CTTTGACGAGCCGCCTTTCT 60.951 55.000 0.00 0.00 0.00 2.52
441 446 2.579738 GACGGACCCTTCCAGCTC 59.420 66.667 0.00 0.00 43.00 4.09
453 458 3.121030 CAGCTCGCTGGAAACGGG 61.121 66.667 10.98 0.00 40.17 5.28
561 596 5.584251 CAGGTGTACAAAACCAGCAAAATTT 59.416 36.000 0.00 0.00 40.40 1.82
590 819 1.446618 CAAATTGGCCAGGAAGCGC 60.447 57.895 5.11 0.00 0.00 5.92
591 820 2.993471 AAATTGGCCAGGAAGCGCG 61.993 57.895 5.11 0.00 0.00 6.86
631 866 3.834489 TCATGAAATCTCTGCCTCTCC 57.166 47.619 0.00 0.00 0.00 3.71
633 868 3.715315 TCATGAAATCTCTGCCTCTCCAT 59.285 43.478 0.00 0.00 0.00 3.41
635 870 2.220313 GAAATCTCTGCCTCTCCATGC 58.780 52.381 0.00 0.00 0.00 4.06
636 871 1.210538 AATCTCTGCCTCTCCATGCA 58.789 50.000 0.00 0.00 35.86 3.96
698 933 4.114794 GCATGAGAAACAAACAAAGCAGT 58.885 39.130 0.00 0.00 0.00 4.40
700 935 3.510719 TGAGAAACAAACAAAGCAGTGC 58.489 40.909 7.13 7.13 0.00 4.40
748 991 1.856014 GCACGCTGTGTTTGACTTCAC 60.856 52.381 9.76 0.00 35.75 3.18
749 992 1.665679 CACGCTGTGTTTGACTTCACT 59.334 47.619 0.00 0.00 35.82 3.41
750 993 1.933853 ACGCTGTGTTTGACTTCACTC 59.066 47.619 0.00 0.00 35.82 3.51
751 994 1.261619 CGCTGTGTTTGACTTCACTCC 59.738 52.381 0.00 0.00 35.82 3.85
752 995 2.288666 GCTGTGTTTGACTTCACTCCA 58.711 47.619 0.00 0.00 35.82 3.86
753 996 2.289002 GCTGTGTTTGACTTCACTCCAG 59.711 50.000 0.00 0.00 35.82 3.86
794 1037 1.377333 CCCCGAAGAGTGAAAGGCC 60.377 63.158 0.00 0.00 0.00 5.19
836 1079 2.750637 TCCGAGAGACCGACCTGC 60.751 66.667 0.00 0.00 0.00 4.85
837 1080 3.827898 CCGAGAGACCGACCTGCC 61.828 72.222 0.00 0.00 0.00 4.85
852 1098 0.541296 CTGCCCCCATCCAATCCATC 60.541 60.000 0.00 0.00 0.00 3.51
871 1117 1.063266 TCCACTTTCCTGCAAAGGGTT 60.063 47.619 1.91 0.00 43.30 4.11
872 1118 2.175931 TCCACTTTCCTGCAAAGGGTTA 59.824 45.455 1.91 0.00 43.30 2.85
877 1123 0.476808 TCCTGCAAAGGGTTAGGGGA 60.477 55.000 0.00 0.00 0.00 4.81
881 1127 0.256177 GCAAAGGGTTAGGGGAGAGG 59.744 60.000 0.00 0.00 0.00 3.69
918 1169 0.037326 TCCACGCCAAGAGTAGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
930 1181 5.789643 AGAGTAGCAAGGATCTCTGATTC 57.210 43.478 0.00 0.00 36.17 2.52
931 1182 5.457686 AGAGTAGCAAGGATCTCTGATTCT 58.542 41.667 0.00 0.00 36.17 2.40
932 1183 5.302568 AGAGTAGCAAGGATCTCTGATTCTG 59.697 44.000 0.00 0.00 36.17 3.02
933 1184 5.207354 AGTAGCAAGGATCTCTGATTCTGA 58.793 41.667 0.00 0.00 0.00 3.27
934 1185 5.840149 AGTAGCAAGGATCTCTGATTCTGAT 59.160 40.000 0.00 0.00 0.00 2.90
935 1186 5.633655 AGCAAGGATCTCTGATTCTGATT 57.366 39.130 0.00 0.00 0.00 2.57
942 1198 5.697633 GGATCTCTGATTCTGATTTGAGAGC 59.302 44.000 0.00 0.00 36.58 4.09
978 1234 2.115911 CCGACAGGAGGAGGTCTCG 61.116 68.421 0.00 0.00 43.34 4.04
979 1235 1.377463 CGACAGGAGGAGGTCTCGT 60.377 63.158 0.00 0.00 43.34 4.18
985 1241 1.507174 GAGGAGGTCTCGTTCACCG 59.493 63.158 0.00 0.00 39.13 4.94
1057 1313 0.947244 AGCTGCTTTCCTCGTTGTTG 59.053 50.000 0.00 0.00 0.00 3.33
1235 1509 3.318313 TCTTCTTCTTCCCCACTCTGTT 58.682 45.455 0.00 0.00 0.00 3.16
1247 1521 4.338879 CCCACTCTGTTCATCCAAAGATT 58.661 43.478 0.00 0.00 0.00 2.40
1248 1522 4.768968 CCCACTCTGTTCATCCAAAGATTT 59.231 41.667 0.00 0.00 0.00 2.17
1249 1523 5.105997 CCCACTCTGTTCATCCAAAGATTTC 60.106 44.000 0.00 0.00 0.00 2.17
1251 1525 5.012893 ACTCTGTTCATCCAAAGATTTCCC 58.987 41.667 0.00 0.00 0.00 3.97
1252 1526 5.222213 ACTCTGTTCATCCAAAGATTTCCCT 60.222 40.000 0.00 0.00 0.00 4.20
1253 1527 6.012508 ACTCTGTTCATCCAAAGATTTCCCTA 60.013 38.462 0.00 0.00 0.00 3.53
1254 1528 6.973642 TCTGTTCATCCAAAGATTTCCCTAT 58.026 36.000 0.00 0.00 0.00 2.57
1270 1544 7.510675 TTTCCCTATTTCTTCACCTCATACT 57.489 36.000 0.00 0.00 0.00 2.12
1283 1557 3.181446 ACCTCATACTACCTCGTCCCTAC 60.181 52.174 0.00 0.00 0.00 3.18
1292 1566 3.504375 ACCTCGTCCCTACAAGTTACTT 58.496 45.455 0.00 0.00 0.00 2.24
1293 1567 3.509184 ACCTCGTCCCTACAAGTTACTTC 59.491 47.826 0.00 0.00 0.00 3.01
1295 1569 4.159879 CCTCGTCCCTACAAGTTACTTCAT 59.840 45.833 0.00 0.00 0.00 2.57
1296 1570 5.359009 CCTCGTCCCTACAAGTTACTTCATA 59.641 44.000 0.00 0.00 0.00 2.15
1297 1571 6.199937 TCGTCCCTACAAGTTACTTCATAC 57.800 41.667 0.00 0.00 0.00 2.39
1299 1573 6.034591 CGTCCCTACAAGTTACTTCATACTG 58.965 44.000 0.00 0.00 0.00 2.74
1300 1574 6.349944 CGTCCCTACAAGTTACTTCATACTGT 60.350 42.308 0.00 0.00 0.00 3.55
1304 1578 7.491696 CCCTACAAGTTACTTCATACTGTAAGC 59.508 40.741 0.00 0.00 37.60 3.09
1305 1579 7.491696 CCTACAAGTTACTTCATACTGTAAGCC 59.508 40.741 0.00 0.00 37.60 4.35
1306 1580 7.005709 ACAAGTTACTTCATACTGTAAGCCT 57.994 36.000 0.00 0.00 37.60 4.58
1307 1581 7.097834 ACAAGTTACTTCATACTGTAAGCCTC 58.902 38.462 0.00 0.00 37.60 4.70
1309 1583 3.802948 ACTTCATACTGTAAGCCTCGG 57.197 47.619 0.00 0.00 37.60 4.63
1310 1584 2.159085 ACTTCATACTGTAAGCCTCGGC 60.159 50.000 0.00 0.00 37.60 5.54
1311 1585 1.480789 TCATACTGTAAGCCTCGGCA 58.519 50.000 11.02 0.00 44.88 5.69
1313 1587 1.933853 CATACTGTAAGCCTCGGCAAC 59.066 52.381 11.02 8.43 44.88 4.17
1314 1588 0.970640 TACTGTAAGCCTCGGCAACA 59.029 50.000 11.02 12.39 44.88 3.33
1317 1591 0.394938 TGTAAGCCTCGGCAACAAGA 59.605 50.000 11.02 0.00 44.88 3.02
1329 1613 3.548818 CGGCAACAAGAGGAAAACTGAAG 60.549 47.826 0.00 0.00 0.00 3.02
1341 1625 7.390162 AGAGGAAAACTGAAGAAAAGAGCATAG 59.610 37.037 0.00 0.00 0.00 2.23
1342 1626 6.072230 AGGAAAACTGAAGAAAAGAGCATAGC 60.072 38.462 0.00 0.00 0.00 2.97
1344 1628 4.292186 ACTGAAGAAAAGAGCATAGCCA 57.708 40.909 0.00 0.00 0.00 4.75
1347 1631 5.356470 ACTGAAGAAAAGAGCATAGCCATTC 59.644 40.000 0.00 0.00 0.00 2.67
1348 1632 4.641989 TGAAGAAAAGAGCATAGCCATTCC 59.358 41.667 0.00 0.00 0.00 3.01
1350 1634 4.205587 AGAAAAGAGCATAGCCATTCCAG 58.794 43.478 0.00 0.00 0.00 3.86
1356 1675 5.128919 AGAGCATAGCCATTCCAGTAAAAG 58.871 41.667 0.00 0.00 0.00 2.27
1394 1723 9.935241 AATTAATGTGGCATGTAAAATTGTACA 57.065 25.926 10.90 10.90 38.32 2.90
1408 1737 4.966965 ATTGTACAGTCTGTCGGTAGAG 57.033 45.455 9.26 0.00 0.00 2.43
1428 1759 0.690192 TAAGGGCTGCTGTGCTGTTA 59.310 50.000 0.00 0.00 0.00 2.41
1436 1767 2.928757 CTGCTGTGCTGTTATCAGTCTC 59.071 50.000 2.85 0.00 43.05 3.36
1442 1773 4.040339 TGTGCTGTTATCAGTCTCAGGAAA 59.960 41.667 2.85 0.00 43.05 3.13
1443 1774 4.997395 GTGCTGTTATCAGTCTCAGGAAAA 59.003 41.667 2.85 0.00 43.05 2.29
1474 1805 5.428496 TTGAGCACATTGAACTGAAAGAG 57.572 39.130 0.00 0.00 37.43 2.85
1481 1812 4.883585 ACATTGAACTGAAAGAGAAGTGCA 59.116 37.500 0.00 0.00 37.43 4.57
1482 1813 5.533903 ACATTGAACTGAAAGAGAAGTGCAT 59.466 36.000 0.00 0.00 37.43 3.96
1523 1857 4.574828 TGTGACAAAAGTAGAGCTTGTTCC 59.425 41.667 0.00 0.00 37.52 3.62
1567 1901 6.340522 CAGGTTCTTGTTTTGACCTTGAAAT 58.659 36.000 0.00 0.00 0.00 2.17
1571 1905 6.707440 TCTTGTTTTGACCTTGAAATGCTA 57.293 33.333 0.00 0.00 0.00 3.49
1588 1922 2.284190 GCTATGAAACTGCAGGAGGTC 58.716 52.381 19.93 9.72 0.00 3.85
1666 2000 4.357947 GTGCTCCAGGACGTCGCA 62.358 66.667 9.92 10.23 0.00 5.10
1669 2003 3.374402 CTCCAGGACGTCGCAGGT 61.374 66.667 9.92 0.00 0.00 4.00
1702 2036 3.423154 CGCACCAAGGAAGTCCGC 61.423 66.667 0.00 0.00 42.08 5.54
1751 2089 5.586643 GCTGTCTTCTTCCAGGTAAAATAGG 59.413 44.000 0.00 0.00 0.00 2.57
1764 2102 3.934457 AAAATAGGTTCAAGCCCAACG 57.066 42.857 0.00 0.00 0.00 4.10
1770 2108 0.102300 GTTCAAGCCCAACGCAAACT 59.898 50.000 0.00 0.00 41.38 2.66
1819 2301 5.163416 CCTGAACAAAACCTCACCTTGATTT 60.163 40.000 0.00 0.00 0.00 2.17
1820 2302 5.659463 TGAACAAAACCTCACCTTGATTTG 58.341 37.500 0.00 0.00 34.75 2.32
1947 2429 5.205821 TCAGCCAAATGATGATGAATTCCT 58.794 37.500 2.27 0.00 0.00 3.36
1949 2431 5.302059 CAGCCAAATGATGATGAATTCCTCT 59.698 40.000 11.39 0.00 0.00 3.69
1970 2452 3.160269 TGATGCAACAGTCTGAGAGAGA 58.840 45.455 6.91 0.00 0.00 3.10
2001 2483 7.660030 TTCTTTCTTCCCAAGAGATGTTTTT 57.340 32.000 0.00 0.00 39.03 1.94
2066 2548 5.048782 GGCGGCATATCATTTTCATAACTCA 60.049 40.000 3.07 0.00 0.00 3.41
2158 2640 6.992063 TGCTATGAGGACATTTTTCTCTTC 57.008 37.500 0.00 0.00 37.87 2.87
2307 2797 2.928757 CGATGAGCTGAGGAACTTCAAG 59.071 50.000 0.00 0.00 41.55 3.02
2311 2801 4.825422 TGAGCTGAGGAACTTCAAGTATG 58.175 43.478 0.00 0.00 41.55 2.39
2420 2910 7.988599 TGTACTAGAACCAATGTTACAACAACT 59.011 33.333 0.00 0.00 43.03 3.16
2421 2911 9.480053 GTACTAGAACCAATGTTACAACAACTA 57.520 33.333 0.00 0.00 43.03 2.24
2423 2913 8.999431 ACTAGAACCAATGTTACAACAACTATG 58.001 33.333 0.00 0.00 43.03 2.23
2424 2914 9.214957 CTAGAACCAATGTTACAACAACTATGA 57.785 33.333 0.00 0.00 43.03 2.15
2425 2915 8.458573 AGAACCAATGTTACAACAACTATGAA 57.541 30.769 0.00 0.00 43.03 2.57
2426 2916 8.349983 AGAACCAATGTTACAACAACTATGAAC 58.650 33.333 0.00 0.00 43.03 3.18
2427 2917 7.575414 ACCAATGTTACAACAACTATGAACA 57.425 32.000 0.00 0.00 43.03 3.18
2428 2918 7.648142 ACCAATGTTACAACAACTATGAACAG 58.352 34.615 0.00 0.00 43.03 3.16
2429 2919 7.500892 ACCAATGTTACAACAACTATGAACAGA 59.499 33.333 0.00 0.00 43.03 3.41
2430 2920 7.803189 CCAATGTTACAACAACTATGAACAGAC 59.197 37.037 0.00 0.00 43.03 3.51
2431 2921 8.341903 CAATGTTACAACAACTATGAACAGACA 58.658 33.333 0.00 0.00 43.03 3.41
2432 2922 7.477144 TGTTACAACAACTATGAACAGACAG 57.523 36.000 0.00 0.00 35.67 3.51
2433 2923 6.481976 TGTTACAACAACTATGAACAGACAGG 59.518 38.462 0.00 0.00 35.67 4.00
2434 2924 5.290493 ACAACAACTATGAACAGACAGGA 57.710 39.130 0.00 0.00 0.00 3.86
2435 2925 5.680619 ACAACAACTATGAACAGACAGGAA 58.319 37.500 0.00 0.00 0.00 3.36
2436 2926 5.760253 ACAACAACTATGAACAGACAGGAAG 59.240 40.000 0.00 0.00 0.00 3.46
2437 2927 5.552870 ACAACTATGAACAGACAGGAAGT 57.447 39.130 0.00 0.00 0.00 3.01
2438 2928 5.300752 ACAACTATGAACAGACAGGAAGTG 58.699 41.667 0.00 0.00 0.00 3.16
2439 2929 5.163301 ACAACTATGAACAGACAGGAAGTGT 60.163 40.000 0.00 0.00 44.49 3.55
2440 2930 5.552870 ACTATGAACAGACAGGAAGTGTT 57.447 39.130 0.00 0.00 40.56 3.32
2441 2931 5.300752 ACTATGAACAGACAGGAAGTGTTG 58.699 41.667 0.00 0.00 40.56 3.33
2442 2932 3.904800 TGAACAGACAGGAAGTGTTGA 57.095 42.857 0.00 0.00 40.56 3.18
2443 2933 4.422073 TGAACAGACAGGAAGTGTTGAT 57.578 40.909 0.00 0.00 40.56 2.57
2444 2934 4.780815 TGAACAGACAGGAAGTGTTGATT 58.219 39.130 0.00 0.00 40.56 2.57
2445 2935 4.816385 TGAACAGACAGGAAGTGTTGATTC 59.184 41.667 0.00 0.00 40.56 2.52
2446 2936 4.422073 ACAGACAGGAAGTGTTGATTCA 57.578 40.909 0.00 0.00 40.56 2.57
2447 2937 4.384056 ACAGACAGGAAGTGTTGATTCAG 58.616 43.478 0.00 0.00 40.56 3.02
2448 2938 3.188048 CAGACAGGAAGTGTTGATTCAGC 59.812 47.826 0.00 0.00 40.56 4.26
2449 2939 3.072184 AGACAGGAAGTGTTGATTCAGCT 59.928 43.478 2.11 0.00 40.56 4.24
2450 2940 4.284490 AGACAGGAAGTGTTGATTCAGCTA 59.716 41.667 2.11 0.00 40.56 3.32
2451 2941 5.046014 AGACAGGAAGTGTTGATTCAGCTAT 60.046 40.000 2.11 0.00 40.56 2.97
2452 2942 4.940046 ACAGGAAGTGTTGATTCAGCTATG 59.060 41.667 2.11 0.09 34.94 2.23
2453 2943 4.940046 CAGGAAGTGTTGATTCAGCTATGT 59.060 41.667 2.11 0.00 0.00 2.29
2454 2944 6.108687 CAGGAAGTGTTGATTCAGCTATGTA 58.891 40.000 2.11 0.00 0.00 2.29
2455 2945 6.036517 CAGGAAGTGTTGATTCAGCTATGTAC 59.963 42.308 2.11 0.00 0.00 2.90
2456 2946 6.070538 AGGAAGTGTTGATTCAGCTATGTACT 60.071 38.462 2.11 0.00 0.00 2.73
2457 2947 7.124298 AGGAAGTGTTGATTCAGCTATGTACTA 59.876 37.037 2.11 0.00 0.00 1.82
2458 2948 7.436673 GGAAGTGTTGATTCAGCTATGTACTAG 59.563 40.741 2.11 0.00 0.00 2.57
2459 2949 7.646548 AGTGTTGATTCAGCTATGTACTAGA 57.353 36.000 0.00 0.00 0.00 2.43
2460 2950 8.067751 AGTGTTGATTCAGCTATGTACTAGAA 57.932 34.615 0.00 0.00 0.00 2.10
2461 2951 7.976734 AGTGTTGATTCAGCTATGTACTAGAAC 59.023 37.037 0.00 0.00 0.00 3.01
2462 2952 7.222999 GTGTTGATTCAGCTATGTACTAGAACC 59.777 40.741 0.00 0.00 0.00 3.62
2463 2953 7.093509 TGTTGATTCAGCTATGTACTAGAACCA 60.094 37.037 0.00 0.00 0.00 3.67
2464 2954 7.418337 TGATTCAGCTATGTACTAGAACCAA 57.582 36.000 0.00 0.00 0.00 3.67
2465 2955 8.023021 TGATTCAGCTATGTACTAGAACCAAT 57.977 34.615 0.00 0.00 0.00 3.16
2466 2956 7.928167 TGATTCAGCTATGTACTAGAACCAATG 59.072 37.037 0.00 0.00 0.00 2.82
2467 2957 6.791867 TCAGCTATGTACTAGAACCAATGT 57.208 37.500 0.00 0.00 0.00 2.71
2468 2958 7.182817 TCAGCTATGTACTAGAACCAATGTT 57.817 36.000 0.00 0.00 37.42 2.71
2469 2959 8.301252 TCAGCTATGTACTAGAACCAATGTTA 57.699 34.615 0.00 0.00 33.97 2.41
2470 2960 8.195436 TCAGCTATGTACTAGAACCAATGTTAC 58.805 37.037 0.00 0.00 33.97 2.50
2471 2961 7.979537 CAGCTATGTACTAGAACCAATGTTACA 59.020 37.037 0.00 0.00 33.97 2.41
2472 2962 8.537016 AGCTATGTACTAGAACCAATGTTACAA 58.463 33.333 0.00 0.00 33.97 2.41
2473 2963 8.601476 GCTATGTACTAGAACCAATGTTACAAC 58.399 37.037 0.00 0.00 33.97 3.32
2552 3063 1.740025 CCAGGAGGAAAACAATCGAGC 59.260 52.381 0.00 0.00 36.89 5.03
2657 3169 7.201679 CCTTCAGCAGTTTATCTAGGAAATGTG 60.202 40.741 0.00 0.00 0.00 3.21
2663 3175 7.550906 GCAGTTTATCTAGGAAATGTGTTCTCT 59.449 37.037 0.00 0.00 0.00 3.10
2670 3182 8.833231 TCTAGGAAATGTGTTCTCTGTAAAAG 57.167 34.615 0.00 0.00 0.00 2.27
2674 3194 9.793259 AGGAAATGTGTTCTCTGTAAAAGAATA 57.207 29.630 0.00 0.00 35.35 1.75
2736 3257 4.740695 GTCATACTGTATTCTCTTCGCCAC 59.259 45.833 0.00 0.00 0.00 5.01
2775 3296 0.902531 CACACGGGAGTAGATTGGGT 59.097 55.000 0.00 0.00 44.67 4.51
2797 3318 6.739112 GGTACCCAAATTTGATATCTCAAGC 58.261 40.000 19.86 2.56 42.19 4.01
2801 3322 6.894103 ACCCAAATTTGATATCTCAAGCTTCT 59.106 34.615 19.86 0.00 42.19 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.807649 GAATGTATTGAAACAGAGGCAATTAAT 57.192 29.630 0.00 0.00 34.41 1.40
2 3 9.023962 AGAATGTATTGAAACAGAGGCAATTAA 57.976 29.630 0.00 0.00 34.41 1.40
3 4 8.579850 AGAATGTATTGAAACAGAGGCAATTA 57.420 30.769 0.00 0.00 34.41 1.40
4 5 7.472334 AGAATGTATTGAAACAGAGGCAATT 57.528 32.000 0.00 0.00 34.41 2.32
5 6 8.579850 TTAGAATGTATTGAAACAGAGGCAAT 57.420 30.769 0.00 0.00 36.35 3.56
6 7 7.994425 TTAGAATGTATTGAAACAGAGGCAA 57.006 32.000 0.00 0.00 31.70 4.52
7 8 9.679661 TTATTAGAATGTATTGAAACAGAGGCA 57.320 29.630 0.00 0.00 31.70 4.75
45 46 3.071167 CCTTTCCACCACTAGGCTATACC 59.929 52.174 0.00 0.00 39.06 2.73
46 47 3.071167 CCCTTTCCACCACTAGGCTATAC 59.929 52.174 0.00 0.00 39.06 1.47
47 48 3.314693 CCCTTTCCACCACTAGGCTATA 58.685 50.000 0.00 0.00 39.06 1.31
48 49 2.127708 CCCTTTCCACCACTAGGCTAT 58.872 52.381 0.00 0.00 39.06 2.97
49 50 1.580059 CCCTTTCCACCACTAGGCTA 58.420 55.000 0.00 0.00 39.06 3.93
50 51 1.208165 CCCCTTTCCACCACTAGGCT 61.208 60.000 0.00 0.00 39.06 4.58
51 52 1.303282 CCCCTTTCCACCACTAGGC 59.697 63.158 0.00 0.00 39.06 3.93
52 53 1.073098 AACCCCTTTCCACCACTAGG 58.927 55.000 0.00 0.00 42.21 3.02
53 54 1.702957 TCAACCCCTTTCCACCACTAG 59.297 52.381 0.00 0.00 0.00 2.57
54 55 1.822425 TCAACCCCTTTCCACCACTA 58.178 50.000 0.00 0.00 0.00 2.74
55 56 1.158007 ATCAACCCCTTTCCACCACT 58.842 50.000 0.00 0.00 0.00 4.00
56 57 1.256812 CATCAACCCCTTTCCACCAC 58.743 55.000 0.00 0.00 0.00 4.16
57 58 0.856982 ACATCAACCCCTTTCCACCA 59.143 50.000 0.00 0.00 0.00 4.17
58 59 1.075536 AGACATCAACCCCTTTCCACC 59.924 52.381 0.00 0.00 0.00 4.61
59 60 2.586648 AGACATCAACCCCTTTCCAC 57.413 50.000 0.00 0.00 0.00 4.02
60 61 3.611025 AAAGACATCAACCCCTTTCCA 57.389 42.857 0.00 0.00 0.00 3.53
61 62 3.895041 TGAAAAGACATCAACCCCTTTCC 59.105 43.478 0.00 0.00 0.00 3.13
62 63 4.262036 GGTGAAAAGACATCAACCCCTTTC 60.262 45.833 0.00 0.00 0.00 2.62
63 64 3.641436 GGTGAAAAGACATCAACCCCTTT 59.359 43.478 0.00 0.00 0.00 3.11
64 65 3.230976 GGTGAAAAGACATCAACCCCTT 58.769 45.455 0.00 0.00 0.00 3.95
65 66 2.490902 GGGTGAAAAGACATCAACCCCT 60.491 50.000 0.00 0.00 46.88 4.79
66 67 1.893137 GGGTGAAAAGACATCAACCCC 59.107 52.381 0.00 0.00 46.88 4.95
69 70 2.296190 GGGTGGGTGAAAAGACATCAAC 59.704 50.000 0.00 0.00 33.66 3.18
70 71 2.091610 TGGGTGGGTGAAAAGACATCAA 60.092 45.455 0.00 0.00 0.00 2.57
71 72 1.496857 TGGGTGGGTGAAAAGACATCA 59.503 47.619 0.00 0.00 0.00 3.07
72 73 2.162681 CTGGGTGGGTGAAAAGACATC 58.837 52.381 0.00 0.00 0.00 3.06
73 74 1.203050 CCTGGGTGGGTGAAAAGACAT 60.203 52.381 0.00 0.00 0.00 3.06
74 75 0.184933 CCTGGGTGGGTGAAAAGACA 59.815 55.000 0.00 0.00 0.00 3.41
75 76 0.185175 ACCTGGGTGGGTGAAAAGAC 59.815 55.000 0.00 0.00 41.11 3.01
76 77 0.930726 AACCTGGGTGGGTGAAAAGA 59.069 50.000 0.00 0.00 39.85 2.52
77 78 1.788229 AAACCTGGGTGGGTGAAAAG 58.212 50.000 0.00 0.00 39.85 2.27
78 79 3.301274 CTTAAACCTGGGTGGGTGAAAA 58.699 45.455 0.00 0.00 39.85 2.29
79 80 2.425102 CCTTAAACCTGGGTGGGTGAAA 60.425 50.000 0.00 0.00 39.85 2.69
80 81 1.146152 CCTTAAACCTGGGTGGGTGAA 59.854 52.381 0.00 0.00 39.85 3.18
81 82 0.774908 CCTTAAACCTGGGTGGGTGA 59.225 55.000 0.00 0.00 39.85 4.02
82 83 0.898326 GCCTTAAACCTGGGTGGGTG 60.898 60.000 0.00 0.00 39.85 4.61
83 84 1.365105 TGCCTTAAACCTGGGTGGGT 61.365 55.000 0.00 0.00 42.05 4.51
84 85 0.041090 ATGCCTTAAACCTGGGTGGG 59.959 55.000 0.00 0.00 41.11 4.61
85 86 1.185315 CATGCCTTAAACCTGGGTGG 58.815 55.000 0.00 0.00 42.93 4.61
86 87 2.214376 TCATGCCTTAAACCTGGGTG 57.786 50.000 0.00 0.00 0.00 4.61
87 88 3.527665 AGTATCATGCCTTAAACCTGGGT 59.472 43.478 0.00 0.00 0.00 4.51
88 89 4.170468 AGTATCATGCCTTAAACCTGGG 57.830 45.455 0.00 0.00 0.00 4.45
89 90 4.202050 GCAAGTATCATGCCTTAAACCTGG 60.202 45.833 0.00 0.00 37.85 4.45
90 91 4.398988 TGCAAGTATCATGCCTTAAACCTG 59.601 41.667 0.00 0.00 43.16 4.00
91 92 4.599041 TGCAAGTATCATGCCTTAAACCT 58.401 39.130 0.00 0.00 43.16 3.50
92 93 4.981806 TGCAAGTATCATGCCTTAAACC 57.018 40.909 0.00 0.00 43.16 3.27
93 94 7.201548 CCAAATTGCAAGTATCATGCCTTAAAC 60.202 37.037 4.94 0.00 43.16 2.01
94 95 6.817641 CCAAATTGCAAGTATCATGCCTTAAA 59.182 34.615 4.94 0.00 43.16 1.52
95 96 6.154192 TCCAAATTGCAAGTATCATGCCTTAA 59.846 34.615 4.94 0.00 43.16 1.85
96 97 5.655974 TCCAAATTGCAAGTATCATGCCTTA 59.344 36.000 4.94 0.00 43.16 2.69
97 98 4.467082 TCCAAATTGCAAGTATCATGCCTT 59.533 37.500 4.94 0.00 43.16 4.35
98 99 4.025360 TCCAAATTGCAAGTATCATGCCT 58.975 39.130 4.94 0.00 43.16 4.75
99 100 4.389890 TCCAAATTGCAAGTATCATGCC 57.610 40.909 4.94 0.00 43.16 4.40
100 101 5.174398 CGAATCCAAATTGCAAGTATCATGC 59.826 40.000 4.94 0.00 44.08 4.06
101 102 6.267817 ACGAATCCAAATTGCAAGTATCATG 58.732 36.000 4.94 0.00 0.00 3.07
102 103 6.455360 ACGAATCCAAATTGCAAGTATCAT 57.545 33.333 4.94 0.00 0.00 2.45
103 104 5.895636 ACGAATCCAAATTGCAAGTATCA 57.104 34.783 4.94 0.00 0.00 2.15
104 105 5.004726 GCAACGAATCCAAATTGCAAGTATC 59.995 40.000 4.94 0.00 45.38 2.24
105 106 4.864247 GCAACGAATCCAAATTGCAAGTAT 59.136 37.500 4.94 0.00 45.38 2.12
106 107 4.233789 GCAACGAATCCAAATTGCAAGTA 58.766 39.130 4.94 0.00 45.38 2.24
107 108 3.059166 GCAACGAATCCAAATTGCAAGT 58.941 40.909 4.94 0.00 45.38 3.16
108 109 3.710437 GCAACGAATCCAAATTGCAAG 57.290 42.857 4.94 0.00 45.38 4.01
111 112 1.726248 GGTGCAACGAATCCAAATTGC 59.274 47.619 0.00 0.94 46.08 3.56
112 113 3.023946 TGGTGCAACGAATCCAAATTG 57.976 42.857 0.00 0.00 38.12 2.32
113 114 3.742433 TTGGTGCAACGAATCCAAATT 57.258 38.095 0.00 0.00 38.12 1.82
114 115 3.959535 ATTGGTGCAACGAATCCAAAT 57.040 38.095 8.14 0.00 41.66 2.32
115 116 3.742433 AATTGGTGCAACGAATCCAAA 57.258 38.095 8.14 0.00 44.79 3.28
116 117 5.650266 AGTATAATTGGTGCAACGAATCCAA 59.350 36.000 6.66 6.66 44.79 3.53
117 118 5.189928 AGTATAATTGGTGCAACGAATCCA 58.810 37.500 0.00 0.00 44.79 3.41
118 119 5.527582 AGAGTATAATTGGTGCAACGAATCC 59.472 40.000 0.00 0.00 44.79 3.01
119 120 6.604735 AGAGTATAATTGGTGCAACGAATC 57.395 37.500 0.00 0.00 44.79 2.52
121 122 6.537301 CCTTAGAGTATAATTGGTGCAACGAA 59.463 38.462 0.00 0.00 39.39 3.85
122 123 6.046593 CCTTAGAGTATAATTGGTGCAACGA 58.953 40.000 0.00 0.00 38.12 3.85
123 124 5.236478 CCCTTAGAGTATAATTGGTGCAACG 59.764 44.000 0.00 0.00 38.12 4.10
124 125 5.008712 GCCCTTAGAGTATAATTGGTGCAAC 59.991 44.000 0.00 0.00 0.00 4.17
125 126 5.130350 GCCCTTAGAGTATAATTGGTGCAA 58.870 41.667 0.00 0.00 0.00 4.08
126 127 4.445735 GGCCCTTAGAGTATAATTGGTGCA 60.446 45.833 0.00 0.00 0.00 4.57
127 128 4.072839 GGCCCTTAGAGTATAATTGGTGC 58.927 47.826 0.00 0.00 0.00 5.01
128 129 5.308237 AGAGGCCCTTAGAGTATAATTGGTG 59.692 44.000 0.00 0.00 0.00 4.17
129 130 5.477913 AGAGGCCCTTAGAGTATAATTGGT 58.522 41.667 0.00 0.00 0.00 3.67
130 131 5.782845 AGAGAGGCCCTTAGAGTATAATTGG 59.217 44.000 0.00 0.00 0.00 3.16
131 132 6.926630 AGAGAGGCCCTTAGAGTATAATTG 57.073 41.667 0.00 0.00 0.00 2.32
132 133 8.011290 TGTAAGAGAGGCCCTTAGAGTATAATT 58.989 37.037 0.00 0.00 0.00 1.40
133 134 7.536625 TGTAAGAGAGGCCCTTAGAGTATAAT 58.463 38.462 0.00 0.00 0.00 1.28
134 135 6.919158 TGTAAGAGAGGCCCTTAGAGTATAA 58.081 40.000 0.00 0.00 0.00 0.98
135 136 6.102910 ACTGTAAGAGAGGCCCTTAGAGTATA 59.897 42.308 21.10 0.00 44.04 1.47
136 137 5.103430 ACTGTAAGAGAGGCCCTTAGAGTAT 60.103 44.000 21.10 5.46 44.04 2.12
137 138 4.230041 ACTGTAAGAGAGGCCCTTAGAGTA 59.770 45.833 21.10 0.00 44.04 2.59
138 139 3.011934 ACTGTAAGAGAGGCCCTTAGAGT 59.988 47.826 18.46 18.46 42.33 3.24
139 140 3.634910 GACTGTAAGAGAGGCCCTTAGAG 59.365 52.174 17.48 17.48 40.92 2.43
140 141 3.269906 AGACTGTAAGAGAGGCCCTTAGA 59.730 47.826 0.00 0.00 37.43 2.10
141 142 3.637769 AGACTGTAAGAGAGGCCCTTAG 58.362 50.000 0.00 0.00 37.43 2.18
142 143 3.759815 AGACTGTAAGAGAGGCCCTTA 57.240 47.619 0.00 0.00 37.43 2.69
143 144 2.632763 AGACTGTAAGAGAGGCCCTT 57.367 50.000 0.00 0.00 37.43 3.95
144 145 2.462723 GAAGACTGTAAGAGAGGCCCT 58.537 52.381 0.00 0.00 37.43 5.19
145 146 1.483004 GGAAGACTGTAAGAGAGGCCC 59.517 57.143 0.00 0.00 37.43 5.80
146 147 2.167487 CAGGAAGACTGTAAGAGAGGCC 59.833 54.545 0.00 0.00 42.42 5.19
147 148 3.518634 CAGGAAGACTGTAAGAGAGGC 57.481 52.381 0.00 0.00 42.42 4.70
197 198 3.119193 CGGGGCCATACACAATGC 58.881 61.111 4.39 0.00 33.92 3.56
258 259 0.182775 ACCAACCGCCTCAAGAAAGT 59.817 50.000 0.00 0.00 0.00 2.66
259 260 1.318576 AACCAACCGCCTCAAGAAAG 58.681 50.000 0.00 0.00 0.00 2.62
301 302 4.672801 GCTCGTCAAAGATTTGTCAATCCC 60.673 45.833 5.29 0.00 39.95 3.85
329 330 3.056393 CGTGTGGTGTGGATACCTAGAAA 60.056 47.826 0.00 0.00 41.43 2.52
331 332 2.097036 CGTGTGGTGTGGATACCTAGA 58.903 52.381 0.00 0.00 41.43 2.43
332 333 1.470979 GCGTGTGGTGTGGATACCTAG 60.471 57.143 0.00 0.00 41.43 3.02
333 334 0.533491 GCGTGTGGTGTGGATACCTA 59.467 55.000 0.00 0.00 41.43 3.08
398 403 3.699894 CCAGGAGAGGCAGTGCGT 61.700 66.667 10.66 10.66 0.00 5.24
427 432 3.394836 AGCGAGCTGGAAGGGTCC 61.395 66.667 0.00 0.00 45.21 4.46
428 433 2.125350 CAGCGAGCTGGAAGGGTC 60.125 66.667 16.69 0.00 40.17 4.46
441 446 1.130561 GAAGAATTCCCGTTTCCAGCG 59.869 52.381 0.65 0.00 39.83 5.18
519 531 3.061260 GCTGCAGCTGGCTAAAGGC 62.061 63.158 31.33 0.18 45.15 4.35
635 870 2.625823 GGGGACACCGCACACAATG 61.626 63.158 0.00 0.00 37.78 2.82
636 871 2.282180 GGGGACACCGCACACAAT 60.282 61.111 0.00 0.00 37.78 2.71
698 933 2.038269 GTCCTTTTCCGATGCCGCA 61.038 57.895 0.00 0.00 0.00 5.69
700 935 1.064060 GAATGTCCTTTTCCGATGCCG 59.936 52.381 0.00 0.00 0.00 5.69
753 996 4.106925 CTGGGGTGGAGCTGGAGC 62.107 72.222 0.00 0.00 42.49 4.70
794 1037 0.110147 AGCAAGTCGAGACGAAGACG 60.110 55.000 0.00 0.00 41.86 4.18
836 1079 0.178953 GTGGATGGATTGGATGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
837 1080 0.855598 AGTGGATGGATTGGATGGGG 59.144 55.000 0.00 0.00 0.00 4.96
852 1098 1.413118 AACCCTTTGCAGGAAAGTGG 58.587 50.000 12.94 14.58 44.19 4.00
871 1117 0.104934 GAATCCCTGCCTCTCCCCTA 60.105 60.000 0.00 0.00 0.00 3.53
872 1118 1.385206 GAATCCCTGCCTCTCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
877 1123 2.366167 AGCCGAATCCCTGCCTCT 60.366 61.111 0.00 0.00 0.00 3.69
918 1169 5.697633 GCTCTCAAATCAGAATCAGAGATCC 59.302 44.000 0.00 0.00 32.35 3.36
930 1181 0.098376 GCTTGCCGCTCTCAAATCAG 59.902 55.000 0.00 0.00 35.14 2.90
931 1182 0.606130 TGCTTGCCGCTCTCAAATCA 60.606 50.000 0.00 0.00 40.11 2.57
932 1183 0.737219 ATGCTTGCCGCTCTCAAATC 59.263 50.000 0.00 0.00 40.11 2.17
933 1184 0.737219 GATGCTTGCCGCTCTCAAAT 59.263 50.000 0.00 0.00 40.11 2.32
934 1185 1.638388 CGATGCTTGCCGCTCTCAAA 61.638 55.000 0.00 0.00 40.11 2.69
935 1186 2.102438 CGATGCTTGCCGCTCTCAA 61.102 57.895 0.00 0.00 40.11 3.02
942 1198 1.010350 GCTGATTCGATGCTTGCCG 60.010 57.895 0.00 0.00 0.00 5.69
978 1234 3.050275 GCTGCTGGGTCGGTGAAC 61.050 66.667 0.00 0.00 0.00 3.18
979 1235 3.535629 CTGCTGCTGGGTCGGTGAA 62.536 63.158 0.00 0.00 0.00 3.18
985 1241 3.138798 CATGGCTGCTGCTGGGTC 61.139 66.667 15.64 0.00 39.59 4.46
1038 1294 0.947244 CAACAACGAGGAAAGCAGCT 59.053 50.000 0.00 0.00 0.00 4.24
1115 1372 1.174712 AAGATGTTGTTGCTGCGGCT 61.175 50.000 20.27 0.00 39.59 5.52
1117 1374 0.311790 ACAAGATGTTGTTGCTGCGG 59.688 50.000 1.68 0.00 45.00 5.69
1235 1509 8.115384 TGAAGAAATAGGGAAATCTTTGGATGA 58.885 33.333 0.00 0.00 32.54 2.92
1247 1521 7.070821 GGTAGTATGAGGTGAAGAAATAGGGAA 59.929 40.741 0.00 0.00 0.00 3.97
1248 1522 6.553852 GGTAGTATGAGGTGAAGAAATAGGGA 59.446 42.308 0.00 0.00 0.00 4.20
1249 1523 6.555360 AGGTAGTATGAGGTGAAGAAATAGGG 59.445 42.308 0.00 0.00 0.00 3.53
1251 1525 7.013464 ACGAGGTAGTATGAGGTGAAGAAATAG 59.987 40.741 0.00 0.00 0.00 1.73
1252 1526 6.832384 ACGAGGTAGTATGAGGTGAAGAAATA 59.168 38.462 0.00 0.00 0.00 1.40
1253 1527 5.657302 ACGAGGTAGTATGAGGTGAAGAAAT 59.343 40.000 0.00 0.00 0.00 2.17
1254 1528 5.014858 ACGAGGTAGTATGAGGTGAAGAAA 58.985 41.667 0.00 0.00 0.00 2.52
1270 1544 4.307032 AGTAACTTGTAGGGACGAGGTA 57.693 45.455 0.00 0.00 40.96 3.08
1283 1557 6.253727 CGAGGCTTACAGTATGAAGTAACTTG 59.746 42.308 0.00 0.00 39.69 3.16
1292 1566 1.480789 TGCCGAGGCTTACAGTATGA 58.519 50.000 15.75 0.00 39.66 2.15
1293 1567 1.933853 GTTGCCGAGGCTTACAGTATG 59.066 52.381 15.75 0.00 42.04 2.39
1295 1569 0.970640 TGTTGCCGAGGCTTACAGTA 59.029 50.000 15.75 0.00 42.51 2.74
1296 1570 0.107831 TTGTTGCCGAGGCTTACAGT 59.892 50.000 15.75 0.00 42.51 3.55
1297 1571 0.798776 CTTGTTGCCGAGGCTTACAG 59.201 55.000 15.75 9.33 42.51 2.74
1299 1573 1.079503 CTCTTGTTGCCGAGGCTTAC 58.920 55.000 15.75 13.13 42.51 2.34
1300 1574 0.036388 CCTCTTGTTGCCGAGGCTTA 60.036 55.000 15.75 0.54 40.27 3.09
1304 1578 1.266989 GTTTTCCTCTTGTTGCCGAGG 59.733 52.381 0.00 0.00 46.52 4.63
1305 1579 2.031682 CAGTTTTCCTCTTGTTGCCGAG 60.032 50.000 0.00 0.00 0.00 4.63
1306 1580 1.946768 CAGTTTTCCTCTTGTTGCCGA 59.053 47.619 0.00 0.00 0.00 5.54
1307 1581 1.946768 TCAGTTTTCCTCTTGTTGCCG 59.053 47.619 0.00 0.00 0.00 5.69
1309 1583 4.900635 TCTTCAGTTTTCCTCTTGTTGC 57.099 40.909 0.00 0.00 0.00 4.17
1310 1584 7.538575 TCTTTTCTTCAGTTTTCCTCTTGTTG 58.461 34.615 0.00 0.00 0.00 3.33
1311 1585 7.629437 GCTCTTTTCTTCAGTTTTCCTCTTGTT 60.629 37.037 0.00 0.00 0.00 2.83
1313 1587 6.183360 TGCTCTTTTCTTCAGTTTTCCTCTTG 60.183 38.462 0.00 0.00 0.00 3.02
1314 1588 5.888161 TGCTCTTTTCTTCAGTTTTCCTCTT 59.112 36.000 0.00 0.00 0.00 2.85
1317 1591 6.072230 GCTATGCTCTTTTCTTCAGTTTTCCT 60.072 38.462 0.00 0.00 0.00 3.36
1329 1613 3.950395 ACTGGAATGGCTATGCTCTTTTC 59.050 43.478 0.00 0.00 0.00 2.29
1341 1625 5.010282 TCTTTCCTCTTTTACTGGAATGGC 58.990 41.667 0.00 0.00 39.30 4.40
1342 1626 6.150140 CAGTCTTTCCTCTTTTACTGGAATGG 59.850 42.308 0.00 0.00 39.30 3.16
1344 1628 7.079451 TCAGTCTTTCCTCTTTTACTGGAAT 57.921 36.000 0.00 0.00 39.30 3.01
1347 1631 7.751768 AATTCAGTCTTTCCTCTTTTACTGG 57.248 36.000 0.00 0.00 36.01 4.00
1356 1675 5.415701 TGCCACATTAATTCAGTCTTTCCTC 59.584 40.000 0.00 0.00 0.00 3.71
1394 1723 2.944991 GCCCTTACTCTACCGACAGACT 60.945 54.545 0.00 0.00 0.00 3.24
1408 1737 0.890996 AACAGCACAGCAGCCCTTAC 60.891 55.000 0.00 0.00 34.23 2.34
1442 1773 3.633525 TCAATGTGCTCAAGCTCAGTTTT 59.366 39.130 11.81 0.50 45.88 2.43
1443 1774 3.216800 TCAATGTGCTCAAGCTCAGTTT 58.783 40.909 11.81 1.11 45.88 2.66
1502 1833 3.807622 CGGAACAAGCTCTACTTTTGTCA 59.192 43.478 0.00 0.00 36.04 3.58
1507 1838 2.143925 GCACGGAACAAGCTCTACTTT 58.856 47.619 0.00 0.00 36.04 2.66
1567 1901 1.630369 ACCTCCTGCAGTTTCATAGCA 59.370 47.619 13.81 0.00 36.72 3.49
1571 1905 0.674895 GCGACCTCCTGCAGTTTCAT 60.675 55.000 13.81 0.00 0.00 2.57
1588 1922 1.290203 AGACACAGTTGTTGTCTGCG 58.710 50.000 4.23 0.00 40.87 5.18
1666 2000 2.160853 GGGAAGGGTTGGGTCACCT 61.161 63.158 0.00 0.00 36.97 4.00
1669 2003 3.253838 CGGGGAAGGGTTGGGTCA 61.254 66.667 0.00 0.00 0.00 4.02
1751 2089 0.102300 AGTTTGCGTTGGGCTTGAAC 59.898 50.000 0.00 0.00 44.05 3.18
1764 2102 6.088824 CCTCTGAATAATGTCAACAGTTTGC 58.911 40.000 0.00 0.00 32.17 3.68
1770 2108 8.956426 GGAATAAACCTCTGAATAATGTCAACA 58.044 33.333 0.00 0.00 0.00 3.33
1819 2301 2.026636 GGTGGCCTATAGAACACAACCA 60.027 50.000 20.85 7.49 35.62 3.67
1820 2302 2.640184 GGTGGCCTATAGAACACAACC 58.360 52.381 20.85 9.66 35.62 3.77
1849 2331 2.444895 AGCGTCATCCCCTCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
1927 2409 5.301045 TCAGAGGAATTCATCATCATTTGGC 59.699 40.000 21.18 0.00 41.31 4.52
1932 2414 5.631119 TGCATCAGAGGAATTCATCATCAT 58.369 37.500 21.18 7.59 41.31 2.45
1933 2415 5.043737 TGCATCAGAGGAATTCATCATCA 57.956 39.130 21.18 8.74 41.31 3.07
1939 2421 4.005650 GACTGTTGCATCAGAGGAATTCA 58.994 43.478 27.42 0.00 38.63 2.57
1941 2423 4.008330 CAGACTGTTGCATCAGAGGAATT 58.992 43.478 27.42 7.32 38.63 2.17
1947 2429 3.160269 TCTCTCAGACTGTTGCATCAGA 58.840 45.455 27.42 5.93 38.63 3.27
1949 2431 3.160269 TCTCTCTCAGACTGTTGCATCA 58.840 45.455 1.59 0.00 0.00 3.07
1996 2478 5.170748 CCAATTCATGCTACTGGGAAAAAC 58.829 41.667 0.00 0.00 0.00 2.43
2001 2483 1.565759 AGCCAATTCATGCTACTGGGA 59.434 47.619 0.00 0.00 35.69 4.37
2158 2640 0.310854 GCAGAAGGGAACAAACCACG 59.689 55.000 0.00 0.00 0.00 4.94
2307 2797 7.966204 ACAACAGCCGATGTAAATAAAACATAC 59.034 33.333 0.00 0.00 43.00 2.39
2311 2801 6.146898 ACACAACAGCCGATGTAAATAAAAC 58.853 36.000 0.00 0.00 43.00 2.43
2420 2910 5.545063 TCAACACTTCCTGTCTGTTCATA 57.455 39.130 0.00 0.00 30.29 2.15
2421 2911 4.422073 TCAACACTTCCTGTCTGTTCAT 57.578 40.909 0.00 0.00 30.29 2.57
2422 2912 3.904800 TCAACACTTCCTGTCTGTTCA 57.095 42.857 0.00 0.00 30.29 3.18
2423 2913 4.816385 TGAATCAACACTTCCTGTCTGTTC 59.184 41.667 0.00 0.00 30.29 3.18
2424 2914 4.780815 TGAATCAACACTTCCTGTCTGTT 58.219 39.130 0.00 0.00 30.29 3.16
2425 2915 4.384056 CTGAATCAACACTTCCTGTCTGT 58.616 43.478 0.00 0.00 30.29 3.41
2426 2916 3.188048 GCTGAATCAACACTTCCTGTCTG 59.812 47.826 0.00 0.00 30.29 3.51
2427 2917 3.072184 AGCTGAATCAACACTTCCTGTCT 59.928 43.478 0.00 0.00 30.29 3.41
2428 2918 3.406764 AGCTGAATCAACACTTCCTGTC 58.593 45.455 0.00 0.00 30.29 3.51
2429 2919 3.498774 AGCTGAATCAACACTTCCTGT 57.501 42.857 0.00 0.00 32.89 4.00
2430 2920 4.940046 ACATAGCTGAATCAACACTTCCTG 59.060 41.667 0.00 0.00 0.00 3.86
2431 2921 5.171339 ACATAGCTGAATCAACACTTCCT 57.829 39.130 0.00 0.00 0.00 3.36
2432 2922 6.109359 AGTACATAGCTGAATCAACACTTCC 58.891 40.000 0.00 0.00 0.00 3.46
2433 2923 8.191446 TCTAGTACATAGCTGAATCAACACTTC 58.809 37.037 0.00 0.00 0.00 3.01
2434 2924 8.067751 TCTAGTACATAGCTGAATCAACACTT 57.932 34.615 0.00 0.00 0.00 3.16
2435 2925 7.646548 TCTAGTACATAGCTGAATCAACACT 57.353 36.000 0.00 0.00 0.00 3.55
2436 2926 7.222999 GGTTCTAGTACATAGCTGAATCAACAC 59.777 40.741 0.00 0.00 0.00 3.32
2437 2927 7.093509 TGGTTCTAGTACATAGCTGAATCAACA 60.094 37.037 0.00 0.00 0.00 3.33
2438 2928 7.265673 TGGTTCTAGTACATAGCTGAATCAAC 58.734 38.462 0.00 0.00 0.00 3.18
2439 2929 7.418337 TGGTTCTAGTACATAGCTGAATCAA 57.582 36.000 0.00 0.00 0.00 2.57
2440 2930 7.418337 TTGGTTCTAGTACATAGCTGAATCA 57.582 36.000 0.00 0.00 0.00 2.57
2441 2931 7.928706 ACATTGGTTCTAGTACATAGCTGAATC 59.071 37.037 0.00 0.00 0.00 2.52
2442 2932 7.796054 ACATTGGTTCTAGTACATAGCTGAAT 58.204 34.615 0.00 0.00 0.00 2.57
2443 2933 7.182817 ACATTGGTTCTAGTACATAGCTGAA 57.817 36.000 0.00 0.00 0.00 3.02
2444 2934 6.791867 ACATTGGTTCTAGTACATAGCTGA 57.208 37.500 0.00 0.00 0.00 4.26
2445 2935 7.979537 TGTAACATTGGTTCTAGTACATAGCTG 59.020 37.037 0.00 0.00 38.45 4.24
2446 2936 8.074613 TGTAACATTGGTTCTAGTACATAGCT 57.925 34.615 1.69 0.00 38.45 3.32
2447 2937 8.601476 GTTGTAACATTGGTTCTAGTACATAGC 58.399 37.037 1.69 0.00 38.45 2.97
2448 2938 9.871238 AGTTGTAACATTGGTTCTAGTACATAG 57.129 33.333 1.69 0.00 38.45 2.23
2451 2941 9.647797 CATAGTTGTAACATTGGTTCTAGTACA 57.352 33.333 1.69 0.00 38.45 2.90
2452 2942 9.865321 TCATAGTTGTAACATTGGTTCTAGTAC 57.135 33.333 0.00 0.00 38.45 2.73
2454 2944 9.216117 GTTCATAGTTGTAACATTGGTTCTAGT 57.784 33.333 0.00 0.00 38.45 2.57
2455 2945 9.214957 TGTTCATAGTTGTAACATTGGTTCTAG 57.785 33.333 0.00 0.00 38.45 2.43
2456 2946 9.214957 CTGTTCATAGTTGTAACATTGGTTCTA 57.785 33.333 0.00 0.00 38.45 2.10
2457 2947 7.936847 TCTGTTCATAGTTGTAACATTGGTTCT 59.063 33.333 0.00 0.00 38.45 3.01
2458 2948 8.015658 GTCTGTTCATAGTTGTAACATTGGTTC 58.984 37.037 0.00 0.00 38.45 3.62
2459 2949 7.500892 TGTCTGTTCATAGTTGTAACATTGGTT 59.499 33.333 0.00 0.00 41.06 3.67
2460 2950 6.995686 TGTCTGTTCATAGTTGTAACATTGGT 59.004 34.615 0.00 0.00 33.01 3.67
2461 2951 7.361201 CCTGTCTGTTCATAGTTGTAACATTGG 60.361 40.741 0.00 0.00 33.01 3.16
2462 2952 7.387673 TCCTGTCTGTTCATAGTTGTAACATTG 59.612 37.037 0.00 0.00 33.01 2.82
2463 2953 7.450074 TCCTGTCTGTTCATAGTTGTAACATT 58.550 34.615 0.00 0.00 33.01 2.71
2464 2954 7.004555 TCCTGTCTGTTCATAGTTGTAACAT 57.995 36.000 0.00 0.00 33.01 2.71
2465 2955 6.413783 TCCTGTCTGTTCATAGTTGTAACA 57.586 37.500 0.00 0.00 0.00 2.41
2466 2956 6.929606 ACTTCCTGTCTGTTCATAGTTGTAAC 59.070 38.462 0.00 0.00 0.00 2.50
2467 2957 6.929049 CACTTCCTGTCTGTTCATAGTTGTAA 59.071 38.462 0.00 0.00 0.00 2.41
2468 2958 6.455647 CACTTCCTGTCTGTTCATAGTTGTA 58.544 40.000 0.00 0.00 0.00 2.41
2469 2959 5.300752 CACTTCCTGTCTGTTCATAGTTGT 58.699 41.667 0.00 0.00 0.00 3.32
2470 2960 4.153117 GCACTTCCTGTCTGTTCATAGTTG 59.847 45.833 0.00 0.00 0.00 3.16
2471 2961 4.202357 TGCACTTCCTGTCTGTTCATAGTT 60.202 41.667 0.00 0.00 0.00 2.24
2472 2962 3.324846 TGCACTTCCTGTCTGTTCATAGT 59.675 43.478 0.00 0.00 0.00 2.12
2473 2963 3.930336 TGCACTTCCTGTCTGTTCATAG 58.070 45.455 0.00 0.00 0.00 2.23
2552 3063 4.633126 CACAGGGATATTCACTCTTGTGTG 59.367 45.833 0.00 0.00 44.14 3.82
2736 3257 6.307155 GTGTGAAGTTTCAGAAATGTATCCG 58.693 40.000 0.00 0.00 37.98 4.18
2775 3296 8.055181 AGAAGCTTGAGATATCAAATTTGGGTA 58.945 33.333 17.90 11.52 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.