Multiple sequence alignment - TraesCS5A01G088500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G088500 chr5A 100.000 2429 0 0 1 2429 118867000 118864572 0.000000e+00 4486.0
1 TraesCS5A01G088500 chr5A 92.553 376 24 3 2057 2429 632172980 632173354 9.880000e-149 536.0
2 TraesCS5A01G088500 chr5A 91.421 373 29 2 2057 2429 46281852 46281483 2.150000e-140 508.0
3 TraesCS5A01G088500 chr5A 94.444 324 18 0 2106 2429 417033598 417033275 1.300000e-137 499.0
4 TraesCS5A01G088500 chr5A 100.000 32 0 0 2053 2084 502929436 502929467 2.610000e-05 60.2
5 TraesCS5A01G088500 chr5D 93.262 1217 60 10 850 2058 113747365 113746163 0.000000e+00 1773.0
6 TraesCS5A01G088500 chr5D 83.136 759 94 16 2 730 113749723 113748969 0.000000e+00 662.0
7 TraesCS5A01G088500 chr5D 94.505 91 4 1 719 809 113747463 113747374 3.260000e-29 139.0
8 TraesCS5A01G088500 chr5B 91.019 824 44 10 850 1648 124634650 124633832 0.000000e+00 1085.0
9 TraesCS5A01G088500 chr5B 89.721 788 49 14 850 1615 124592363 124591586 0.000000e+00 977.0
10 TraesCS5A01G088500 chr5B 87.485 847 66 20 1 809 124593219 124592375 0.000000e+00 941.0
11 TraesCS5A01G088500 chr5B 87.028 848 69 13 1 809 124645383 124644538 0.000000e+00 918.0
12 TraesCS5A01G088500 chr5B 93.499 523 30 2 850 1372 124644525 124644007 0.000000e+00 774.0
13 TraesCS5A01G088500 chr5B 90.027 371 28 6 1688 2058 124591566 124591205 2.830000e-129 472.0
14 TraesCS5A01G088500 chr5B 89.011 91 5 5 723 809 124634749 124634660 9.180000e-20 108.0
15 TraesCS5A01G088500 chr7A 94.930 355 18 0 2075 2429 107598094 107597740 7.590000e-155 556.0
16 TraesCS5A01G088500 chr7A 92.978 356 23 2 2075 2429 282363102 282363456 3.580000e-143 518.0
17 TraesCS5A01G088500 chr7A 92.394 355 23 3 2075 2429 90225093 90224743 1.000000e-138 503.0
18 TraesCS5A01G088500 chr7A 92.113 355 28 0 2075 2429 291658155 291657801 3.610000e-138 501.0
19 TraesCS5A01G088500 chr2A 93.239 355 24 0 2075 2429 725889472 725889826 7.690000e-145 523.0
20 TraesCS5A01G088500 chr6A 92.655 354 24 2 2075 2428 130417971 130418322 2.150000e-140 508.0
21 TraesCS5A01G088500 chr4D 100.000 31 0 0 2053 2083 496030129 496030159 9.380000e-05 58.4
22 TraesCS5A01G088500 chr3D 94.595 37 1 1 2049 2085 450871901 450871866 3.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G088500 chr5A 118864572 118867000 2428 True 4486.000000 4486 100.000000 1 2429 1 chr5A.!!$R2 2428
1 TraesCS5A01G088500 chr5D 113746163 113749723 3560 True 858.000000 1773 90.301000 2 2058 3 chr5D.!!$R1 2056
2 TraesCS5A01G088500 chr5B 124644007 124645383 1376 True 846.000000 918 90.263500 1 1372 2 chr5B.!!$R3 1371
3 TraesCS5A01G088500 chr5B 124591205 124593219 2014 True 796.666667 977 89.077667 1 2058 3 chr5B.!!$R1 2057
4 TraesCS5A01G088500 chr5B 124633832 124634749 917 True 596.500000 1085 90.015000 723 1648 2 chr5B.!!$R2 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 520 0.700564 ATGTGTCAGGTTGGATGGCT 59.299 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 3672 0.030101 CGTGAACCCGCAAACATGTT 59.97 50.0 4.92 4.92 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.376037 AACACTAGCTTGCGGAGGC 60.376 57.895 1.80 1.80 40.52 4.70
69 70 3.486252 GAGGATCCGGGCTTCGTCG 62.486 68.421 5.98 0.00 37.11 5.12
71 72 2.278661 GATCCGGGCTTCGTCGAC 60.279 66.667 5.18 5.18 37.11 4.20
122 123 4.511246 CCCCGCACCATCTGCCAT 62.511 66.667 0.00 0.00 43.84 4.40
138 139 1.236616 CCATGAGCGTTGGCAGACAA 61.237 55.000 0.00 0.00 43.41 3.18
143 144 3.022287 CGTTGGCAGACAAAGCGT 58.978 55.556 0.00 0.00 41.58 5.07
155 156 4.452455 CAGACAAAGCGTGACCTCTTATTT 59.548 41.667 0.00 0.00 0.00 1.40
251 267 1.451927 GCCGCCAATGACCATGAGA 60.452 57.895 0.00 0.00 0.00 3.27
284 300 1.268899 CGTAGACGTCAACCTCACCTT 59.731 52.381 19.50 0.00 34.11 3.50
301 317 2.762969 CTTCACCGGCAACATCCCCA 62.763 60.000 0.00 0.00 0.00 4.96
358 374 2.203451 ACGGACGTGACCACCTCT 60.203 61.111 0.00 0.00 0.00 3.69
442 458 8.391106 GGTTGATGACTTTAGCTATGTACAAAG 58.609 37.037 0.00 0.00 34.80 2.77
490 508 4.517075 TGTCCGCTTTTATTTGATGTGTCA 59.483 37.500 0.00 0.00 0.00 3.58
502 520 0.700564 ATGTGTCAGGTTGGATGGCT 59.299 50.000 0.00 0.00 0.00 4.75
510 528 3.329889 TTGGATGGCTGGCTCGGT 61.330 61.111 2.00 0.00 0.00 4.69
513 531 1.223487 GGATGGCTGGCTCGGTTAA 59.777 57.895 2.00 0.00 0.00 2.01
538 556 2.092291 CCACGAACACATCCGGACG 61.092 63.158 6.12 7.44 0.00 4.79
557 575 3.054276 CGTGTCCAAAAACGTTTAGCA 57.946 42.857 15.03 6.41 35.13 3.49
567 594 4.637483 AAACGTTTAGCATGATGGATGG 57.363 40.909 12.83 0.00 31.99 3.51
636 668 5.047731 GGAAAAGCTCTTCCATTAAACAGCT 60.048 40.000 14.22 0.00 43.84 4.24
638 670 5.635417 AAGCTCTTCCATTAAACAGCTTC 57.365 39.130 0.00 0.00 38.28 3.86
654 686 1.401905 GCTTCCCGAACAATGTCATCC 59.598 52.381 0.00 0.00 0.00 3.51
657 689 1.714899 CCCGAACAATGTCATCCGCC 61.715 60.000 0.00 0.00 0.00 6.13
672 709 2.843545 GCCACCAGGTCCAAAGGA 59.156 61.111 0.00 0.00 37.19 3.36
732 769 5.163374 GCTTCCGAACCCCTAGTTAGAATTA 60.163 44.000 0.00 0.00 39.40 1.40
805 2362 4.111375 ACTTACGTCTCCAGCAAGTATG 57.889 45.455 0.00 0.00 0.00 2.39
809 2366 1.478510 CGTCTCCAGCAAGTATGTCCT 59.521 52.381 0.00 0.00 0.00 3.85
810 2367 2.688446 CGTCTCCAGCAAGTATGTCCTA 59.312 50.000 0.00 0.00 0.00 2.94
811 2368 3.243234 CGTCTCCAGCAAGTATGTCCTAG 60.243 52.174 0.00 0.00 0.00 3.02
812 2369 2.695666 TCTCCAGCAAGTATGTCCTAGC 59.304 50.000 0.00 0.00 0.00 3.42
815 2372 3.455910 TCCAGCAAGTATGTCCTAGCATT 59.544 43.478 0.00 0.00 0.00 3.56
816 2373 3.812053 CCAGCAAGTATGTCCTAGCATTC 59.188 47.826 0.00 0.00 0.00 2.67
818 2375 3.142174 GCAAGTATGTCCTAGCATTCCC 58.858 50.000 0.00 0.00 0.00 3.97
820 2377 4.636249 CAAGTATGTCCTAGCATTCCCTC 58.364 47.826 0.00 0.00 0.00 4.30
821 2378 3.928754 AGTATGTCCTAGCATTCCCTCA 58.071 45.455 0.00 0.00 0.00 3.86
822 2379 4.298626 AGTATGTCCTAGCATTCCCTCAA 58.701 43.478 0.00 0.00 0.00 3.02
823 2380 4.721776 AGTATGTCCTAGCATTCCCTCAAA 59.278 41.667 0.00 0.00 0.00 2.69
824 2381 4.591321 ATGTCCTAGCATTCCCTCAAAA 57.409 40.909 0.00 0.00 0.00 2.44
825 2382 4.380843 TGTCCTAGCATTCCCTCAAAAA 57.619 40.909 0.00 0.00 0.00 1.94
851 2408 9.953565 AAAAGTGTGTCCTAGCATTATTAGTTA 57.046 29.630 0.00 0.00 0.00 2.24
853 2410 9.601217 AAGTGTGTCCTAGCATTATTAGTTAAG 57.399 33.333 0.00 0.00 0.00 1.85
872 2429 7.803724 AGTTAAGTAATCAATCGACAACCAAC 58.196 34.615 0.00 0.00 0.00 3.77
881 2438 0.753848 CGACAACCAACCCCCTTTGT 60.754 55.000 0.00 0.00 34.88 2.83
901 2458 1.274167 TCCGTGTAACCCTAGCAGTTG 59.726 52.381 6.64 0.00 0.00 3.16
963 2520 1.355066 CGAGCGACAGGAAAAGAGCC 61.355 60.000 0.00 0.00 0.00 4.70
986 2543 1.888391 GCAAACCAAGGAGGAAGGAGG 60.888 57.143 0.00 0.00 41.22 4.30
1066 2623 0.750182 GGAGCCTGACGAGTCTAGCT 60.750 60.000 16.39 16.39 39.90 3.32
1117 2674 2.038426 TCCTTCTTGGCGTCTTTCATCA 59.962 45.455 0.00 0.00 35.26 3.07
1145 2702 0.238289 TTGCTGCTGCTCTTTTACGC 59.762 50.000 17.00 0.00 40.48 4.42
1320 2885 2.977914 AGGTTCATCCAGTTCGATGTG 58.022 47.619 0.00 0.00 40.50 3.21
1357 2922 4.104776 CGTTGGTTGGCATGACATATTTC 58.895 43.478 0.00 0.00 0.00 2.17
1460 3050 2.735134 GTTCTGGTTGTGCTAGGTAACG 59.265 50.000 0.00 0.00 46.39 3.18
1464 3054 1.730612 GGTTGTGCTAGGTAACGAAGC 59.269 52.381 1.55 1.55 46.74 3.86
1480 3070 4.442706 ACGAAGCCATATACTCTGTTTGG 58.557 43.478 0.00 0.00 0.00 3.28
1573 3163 0.389296 CGTGTCGGTATGAACTGCCA 60.389 55.000 0.00 0.00 31.50 4.92
1720 3310 9.118300 AGTGAAATAGATAAAAGCAGGATCTTG 57.882 33.333 0.00 0.00 32.27 3.02
1771 3361 4.789012 ATCCCTTGTGTGTATGCTTTTG 57.211 40.909 0.00 0.00 0.00 2.44
1773 3363 3.957497 TCCCTTGTGTGTATGCTTTTGTT 59.043 39.130 0.00 0.00 0.00 2.83
1786 3376 2.554893 GCTTTTGTTCCCGACCATAACA 59.445 45.455 0.00 0.00 0.00 2.41
1787 3377 3.004944 GCTTTTGTTCCCGACCATAACAA 59.995 43.478 0.00 0.00 40.36 2.83
1791 3381 2.081462 GTTCCCGACCATAACAAGGTG 58.919 52.381 0.00 0.00 40.09 4.00
1799 3389 4.863131 CGACCATAACAAGGTGTTACTCTC 59.137 45.833 3.07 0.00 44.54 3.20
1801 3391 4.181578 CCATAACAAGGTGTTACTCTCCG 58.818 47.826 3.07 0.00 44.54 4.63
1802 3392 4.322499 CCATAACAAGGTGTTACTCTCCGT 60.322 45.833 3.07 0.00 44.54 4.69
1803 3393 3.382048 AACAAGGTGTTACTCTCCGTC 57.618 47.619 0.00 0.00 39.09 4.79
1804 3394 1.268899 ACAAGGTGTTACTCTCCGTCG 59.731 52.381 0.00 0.00 35.13 5.12
1805 3395 1.268899 CAAGGTGTTACTCTCCGTCGT 59.731 52.381 0.00 0.00 35.13 4.34
1836 3427 7.696992 TTGCGAGAAAATAGGGAGTTTATTT 57.303 32.000 0.00 0.00 33.37 1.40
1863 3454 4.581824 AGTGACAGGTTTACAGTCGTCTAA 59.418 41.667 0.00 0.00 35.09 2.10
1869 3460 7.436118 ACAGGTTTACAGTCGTCTAATACAAA 58.564 34.615 0.00 0.00 0.00 2.83
1904 3495 2.844451 GCTGCGTGCTCCAACCAAA 61.844 57.895 0.00 0.00 38.95 3.28
1928 3519 1.576356 GGTGATGCGCTCCTTTCTAG 58.424 55.000 9.73 0.00 0.00 2.43
1935 3526 4.600692 TGCGCTCCTTTCTAGCATAATA 57.399 40.909 9.73 0.00 40.08 0.98
1936 3527 4.956085 TGCGCTCCTTTCTAGCATAATAA 58.044 39.130 9.73 0.00 40.08 1.40
1937 3528 5.551233 TGCGCTCCTTTCTAGCATAATAAT 58.449 37.500 9.73 0.00 40.08 1.28
1940 3531 7.331934 TGCGCTCCTTTCTAGCATAATAATTAG 59.668 37.037 9.73 0.00 40.08 1.73
2022 3613 3.758554 ACTACCATCAGCGCTTTGATTTT 59.241 39.130 7.50 1.05 35.67 1.82
2075 3666 3.817709 AAGAGCAACTCTAGCAGATCC 57.182 47.619 0.00 0.00 40.28 3.36
2076 3667 2.038659 AGAGCAACTCTAGCAGATCCC 58.961 52.381 0.00 0.00 39.28 3.85
2077 3668 0.749649 AGCAACTCTAGCAGATCCCG 59.250 55.000 0.00 0.00 0.00 5.14
2078 3669 0.878086 GCAACTCTAGCAGATCCCGC 60.878 60.000 0.00 0.00 0.00 6.13
2079 3670 0.461548 CAACTCTAGCAGATCCCGCA 59.538 55.000 7.42 0.00 0.00 5.69
2080 3671 1.134699 CAACTCTAGCAGATCCCGCAA 60.135 52.381 7.42 0.00 0.00 4.85
2081 3672 1.195115 ACTCTAGCAGATCCCGCAAA 58.805 50.000 7.42 0.00 0.00 3.68
2082 3673 1.555075 ACTCTAGCAGATCCCGCAAAA 59.445 47.619 7.42 0.00 0.00 2.44
2083 3674 1.936547 CTCTAGCAGATCCCGCAAAAC 59.063 52.381 7.42 0.00 0.00 2.43
2084 3675 1.277842 TCTAGCAGATCCCGCAAAACA 59.722 47.619 7.42 0.00 0.00 2.83
2085 3676 2.092968 TCTAGCAGATCCCGCAAAACAT 60.093 45.455 7.42 0.00 0.00 2.71
2086 3677 0.813184 AGCAGATCCCGCAAAACATG 59.187 50.000 7.42 0.00 0.00 3.21
2087 3678 0.527565 GCAGATCCCGCAAAACATGT 59.472 50.000 0.00 0.00 0.00 3.21
2088 3679 1.067635 GCAGATCCCGCAAAACATGTT 60.068 47.619 4.92 4.92 0.00 2.71
2089 3680 2.610232 GCAGATCCCGCAAAACATGTTT 60.610 45.455 18.13 18.13 0.00 2.83
2090 3681 2.988493 CAGATCCCGCAAAACATGTTTG 59.012 45.455 23.93 17.66 32.36 2.93
2095 3686 2.984871 GCAAAACATGTTTGCGGGT 58.015 47.368 23.93 5.61 44.13 5.28
2096 3687 1.294857 GCAAAACATGTTTGCGGGTT 58.705 45.000 23.93 4.86 44.13 4.11
2097 3688 1.260297 GCAAAACATGTTTGCGGGTTC 59.740 47.619 23.93 0.00 44.13 3.62
2098 3689 2.544685 CAAAACATGTTTGCGGGTTCA 58.455 42.857 23.93 0.00 32.36 3.18
2099 3690 2.217429 AAACATGTTTGCGGGTTCAC 57.783 45.000 22.71 0.00 0.00 3.18
2100 3691 0.030101 AACATGTTTGCGGGTTCACG 59.970 50.000 4.92 0.00 0.00 4.35
2101 3692 0.816018 ACATGTTTGCGGGTTCACGA 60.816 50.000 0.00 0.00 35.47 4.35
2102 3693 0.309302 CATGTTTGCGGGTTCACGAA 59.691 50.000 0.00 0.00 35.47 3.85
2103 3694 1.025812 ATGTTTGCGGGTTCACGAAA 58.974 45.000 0.00 0.00 35.47 3.46
2104 3695 0.809385 TGTTTGCGGGTTCACGAAAA 59.191 45.000 0.00 0.00 38.95 2.29
2105 3696 1.405821 TGTTTGCGGGTTCACGAAAAT 59.594 42.857 3.90 0.00 42.74 1.82
2106 3697 2.048498 GTTTGCGGGTTCACGAAAATC 58.952 47.619 3.90 0.00 42.74 2.17
2107 3698 0.236187 TTGCGGGTTCACGAAAATCG 59.764 50.000 0.00 0.00 46.93 3.34
2108 3699 1.511254 GCGGGTTCACGAAAATCGC 60.511 57.895 0.00 0.00 45.12 4.58
2109 3700 1.908066 GCGGGTTCACGAAAATCGCT 61.908 55.000 0.00 0.00 45.12 4.93
2110 3701 0.515564 CGGGTTCACGAAAATCGCTT 59.484 50.000 0.00 0.00 45.12 4.68
2111 3702 1.069500 CGGGTTCACGAAAATCGCTTT 60.069 47.619 0.00 0.00 45.12 3.51
2112 3703 2.603652 CGGGTTCACGAAAATCGCTTTT 60.604 45.455 0.00 0.00 45.12 2.27
2113 3704 3.364167 CGGGTTCACGAAAATCGCTTTTA 60.364 43.478 0.00 0.00 45.12 1.52
2114 3705 4.670735 CGGGTTCACGAAAATCGCTTTTAT 60.671 41.667 0.00 0.00 45.12 1.40
2115 3706 4.557301 GGGTTCACGAAAATCGCTTTTATG 59.443 41.667 0.00 0.14 45.12 1.90
2116 3707 4.557301 GGTTCACGAAAATCGCTTTTATGG 59.443 41.667 0.00 0.00 45.12 2.74
2117 3708 4.349663 TCACGAAAATCGCTTTTATGGG 57.650 40.909 0.00 0.00 45.12 4.00
2118 3709 3.754323 TCACGAAAATCGCTTTTATGGGT 59.246 39.130 0.00 0.00 45.12 4.51
2119 3710 4.095610 CACGAAAATCGCTTTTATGGGTC 58.904 43.478 0.00 0.00 45.12 4.46
2120 3711 3.754323 ACGAAAATCGCTTTTATGGGTCA 59.246 39.130 0.00 0.00 45.12 4.02
2121 3712 4.216687 ACGAAAATCGCTTTTATGGGTCAA 59.783 37.500 0.00 0.00 45.12 3.18
2122 3713 5.157781 CGAAAATCGCTTTTATGGGTCAAA 58.842 37.500 0.00 0.00 34.73 2.69
2123 3714 5.631512 CGAAAATCGCTTTTATGGGTCAAAA 59.368 36.000 0.00 0.00 34.73 2.44
2124 3715 6.144724 CGAAAATCGCTTTTATGGGTCAAAAA 59.855 34.615 0.00 0.00 34.73 1.94
2125 3716 7.148656 CGAAAATCGCTTTTATGGGTCAAAAAT 60.149 33.333 0.00 0.00 34.73 1.82
2126 3717 9.145865 GAAAATCGCTTTTATGGGTCAAAAATA 57.854 29.630 0.00 0.00 34.73 1.40
2127 3718 9.665719 AAAATCGCTTTTATGGGTCAAAAATAT 57.334 25.926 0.00 0.00 32.81 1.28
2129 3720 9.744468 AATCGCTTTTATGGGTCAAAAATATAC 57.256 29.630 0.00 0.00 0.00 1.47
2130 3721 7.411274 TCGCTTTTATGGGTCAAAAATATACG 58.589 34.615 0.00 0.00 0.00 3.06
2131 3722 6.141685 CGCTTTTATGGGTCAAAAATATACGC 59.858 38.462 0.00 0.00 0.00 4.42
2132 3723 6.141685 GCTTTTATGGGTCAAAAATATACGCG 59.858 38.462 3.53 3.53 0.00 6.01
2133 3724 6.680874 TTTATGGGTCAAAAATATACGCGT 57.319 33.333 19.17 19.17 0.00 6.01
2134 3725 4.806342 ATGGGTCAAAAATATACGCGTC 57.194 40.909 18.63 0.00 0.00 5.19
2135 3726 2.937799 TGGGTCAAAAATATACGCGTCC 59.062 45.455 18.63 6.35 0.00 4.79
2136 3727 2.937799 GGGTCAAAAATATACGCGTCCA 59.062 45.455 18.63 4.75 0.00 4.02
2137 3728 3.374678 GGGTCAAAAATATACGCGTCCAA 59.625 43.478 18.63 1.99 0.00 3.53
2138 3729 4.495184 GGGTCAAAAATATACGCGTCCAAG 60.495 45.833 18.63 0.00 0.00 3.61
2139 3730 4.026407 GTCAAAAATATACGCGTCCAAGC 58.974 43.478 18.63 0.00 0.00 4.01
2140 3731 3.685272 TCAAAAATATACGCGTCCAAGCA 59.315 39.130 18.63 0.00 36.85 3.91
2141 3732 3.944422 AAAATATACGCGTCCAAGCAG 57.056 42.857 18.63 0.00 36.85 4.24
2142 3733 2.882927 AATATACGCGTCCAAGCAGA 57.117 45.000 18.63 0.00 36.85 4.26
2143 3734 2.882927 ATATACGCGTCCAAGCAGAA 57.117 45.000 18.63 0.00 36.85 3.02
2144 3735 1.917273 TATACGCGTCCAAGCAGAAC 58.083 50.000 18.63 0.00 36.85 3.01
2145 3736 0.739813 ATACGCGTCCAAGCAGAACC 60.740 55.000 18.63 0.00 36.85 3.62
2146 3737 2.775032 TACGCGTCCAAGCAGAACCC 62.775 60.000 18.63 0.00 36.85 4.11
2147 3738 3.423154 GCGTCCAAGCAGAACCCG 61.423 66.667 0.00 0.00 37.05 5.28
2148 3739 2.030562 CGTCCAAGCAGAACCCGT 59.969 61.111 0.00 0.00 0.00 5.28
2149 3740 1.290955 CGTCCAAGCAGAACCCGTA 59.709 57.895 0.00 0.00 0.00 4.02
2150 3741 0.108329 CGTCCAAGCAGAACCCGTAT 60.108 55.000 0.00 0.00 0.00 3.06
2151 3742 1.653151 GTCCAAGCAGAACCCGTATC 58.347 55.000 0.00 0.00 0.00 2.24
2152 3743 1.207329 GTCCAAGCAGAACCCGTATCT 59.793 52.381 0.00 0.00 0.00 1.98
2153 3744 2.429610 GTCCAAGCAGAACCCGTATCTA 59.570 50.000 0.00 0.00 0.00 1.98
2154 3745 3.101437 TCCAAGCAGAACCCGTATCTAA 58.899 45.455 0.00 0.00 0.00 2.10
2155 3746 3.516300 TCCAAGCAGAACCCGTATCTAAA 59.484 43.478 0.00 0.00 0.00 1.85
2156 3747 3.621715 CCAAGCAGAACCCGTATCTAAAC 59.378 47.826 0.00 0.00 0.00 2.01
2157 3748 3.538634 AGCAGAACCCGTATCTAAACC 57.461 47.619 0.00 0.00 0.00 3.27
2158 3749 3.105283 AGCAGAACCCGTATCTAAACCT 58.895 45.455 0.00 0.00 0.00 3.50
2159 3750 3.118738 AGCAGAACCCGTATCTAAACCTG 60.119 47.826 0.00 0.00 0.00 4.00
2160 3751 3.369157 GCAGAACCCGTATCTAAACCTGT 60.369 47.826 0.00 0.00 0.00 4.00
2161 3752 4.142093 GCAGAACCCGTATCTAAACCTGTA 60.142 45.833 0.00 0.00 0.00 2.74
2162 3753 5.452917 GCAGAACCCGTATCTAAACCTGTAT 60.453 44.000 0.00 0.00 0.00 2.29
2163 3754 6.239120 GCAGAACCCGTATCTAAACCTGTATA 60.239 42.308 0.00 0.00 0.00 1.47
2164 3755 7.685155 GCAGAACCCGTATCTAAACCTGTATAA 60.685 40.741 0.00 0.00 0.00 0.98
2165 3756 7.650903 CAGAACCCGTATCTAAACCTGTATAAC 59.349 40.741 0.00 0.00 0.00 1.89
2166 3757 7.562821 AGAACCCGTATCTAAACCTGTATAACT 59.437 37.037 0.00 0.00 0.00 2.24
2167 3758 7.666063 ACCCGTATCTAAACCTGTATAACTT 57.334 36.000 0.00 0.00 0.00 2.66
2168 3759 7.495055 ACCCGTATCTAAACCTGTATAACTTG 58.505 38.462 0.00 0.00 0.00 3.16
2169 3760 7.342799 ACCCGTATCTAAACCTGTATAACTTGA 59.657 37.037 0.00 0.00 0.00 3.02
2170 3761 8.199449 CCCGTATCTAAACCTGTATAACTTGAA 58.801 37.037 0.00 0.00 0.00 2.69
2171 3762 9.590451 CCGTATCTAAACCTGTATAACTTGAAA 57.410 33.333 0.00 0.00 0.00 2.69
2182 3773 9.382244 CCTGTATAACTTGAAAAACTTCTTTCG 57.618 33.333 0.00 0.00 38.00 3.46
2183 3774 8.776680 TGTATAACTTGAAAAACTTCTTTCGC 57.223 30.769 0.00 0.00 38.00 4.70
2184 3775 7.858879 TGTATAACTTGAAAAACTTCTTTCGCC 59.141 33.333 0.00 0.00 38.00 5.54
2185 3776 3.691498 ACTTGAAAAACTTCTTTCGCCG 58.309 40.909 0.00 0.00 38.00 6.46
2186 3777 2.766970 TGAAAAACTTCTTTCGCCGG 57.233 45.000 0.00 0.00 38.00 6.13
2187 3778 2.290464 TGAAAAACTTCTTTCGCCGGA 58.710 42.857 5.05 0.00 38.00 5.14
2188 3779 2.289547 TGAAAAACTTCTTTCGCCGGAG 59.710 45.455 5.05 0.00 38.00 4.63
2189 3780 2.249844 AAAACTTCTTTCGCCGGAGA 57.750 45.000 5.05 3.81 0.00 3.71
2190 3781 2.249844 AAACTTCTTTCGCCGGAGAA 57.750 45.000 17.34 17.34 0.00 2.87
2191 3782 2.249844 AACTTCTTTCGCCGGAGAAA 57.750 45.000 28.25 28.25 37.74 2.52
2192 3783 1.509703 ACTTCTTTCGCCGGAGAAAC 58.490 50.000 26.87 0.00 35.44 2.78
2193 3784 1.070289 ACTTCTTTCGCCGGAGAAACT 59.930 47.619 26.87 8.97 35.44 2.66
2194 3785 1.461127 CTTCTTTCGCCGGAGAAACTG 59.539 52.381 26.87 18.88 35.44 3.16
2195 3786 0.949105 TCTTTCGCCGGAGAAACTGC 60.949 55.000 26.87 0.00 35.44 4.40
2196 3787 1.227704 TTTCGCCGGAGAAACTGCA 60.228 52.632 26.87 7.21 35.44 4.41
2197 3788 1.503818 TTTCGCCGGAGAAACTGCAC 61.504 55.000 26.87 0.00 35.44 4.57
2198 3789 2.652382 TTCGCCGGAGAAACTGCACA 62.652 55.000 18.98 0.00 0.00 4.57
2199 3790 2.250939 CGCCGGAGAAACTGCACAA 61.251 57.895 5.05 0.00 0.00 3.33
2200 3791 1.781025 CGCCGGAGAAACTGCACAAA 61.781 55.000 5.05 0.00 0.00 2.83
2201 3792 0.317854 GCCGGAGAAACTGCACAAAC 60.318 55.000 5.05 0.00 0.00 2.93
2202 3793 1.021202 CCGGAGAAACTGCACAAACA 58.979 50.000 0.00 0.00 0.00 2.83
2203 3794 1.268539 CCGGAGAAACTGCACAAACAC 60.269 52.381 0.00 0.00 0.00 3.32
2204 3795 1.400142 CGGAGAAACTGCACAAACACA 59.600 47.619 0.00 0.00 0.00 3.72
2205 3796 2.539547 CGGAGAAACTGCACAAACACAG 60.540 50.000 0.00 0.00 39.86 3.66
2211 3802 3.698029 ACTGCACAAACACAGTTCATC 57.302 42.857 0.00 0.00 44.59 2.92
2212 3803 3.016031 ACTGCACAAACACAGTTCATCA 58.984 40.909 0.00 0.00 44.59 3.07
2213 3804 3.181497 ACTGCACAAACACAGTTCATCAC 60.181 43.478 0.00 0.00 44.59 3.06
2214 3805 2.751806 TGCACAAACACAGTTCATCACA 59.248 40.909 0.00 0.00 0.00 3.58
2215 3806 3.380954 TGCACAAACACAGTTCATCACAT 59.619 39.130 0.00 0.00 0.00 3.21
2216 3807 4.578105 TGCACAAACACAGTTCATCACATA 59.422 37.500 0.00 0.00 0.00 2.29
2217 3808 4.911610 GCACAAACACAGTTCATCACATAC 59.088 41.667 0.00 0.00 0.00 2.39
2218 3809 5.277974 GCACAAACACAGTTCATCACATACT 60.278 40.000 0.00 0.00 0.00 2.12
2219 3810 6.073276 GCACAAACACAGTTCATCACATACTA 60.073 38.462 0.00 0.00 0.00 1.82
2220 3811 7.290842 CACAAACACAGTTCATCACATACTAC 58.709 38.462 0.00 0.00 0.00 2.73
2221 3812 6.989759 ACAAACACAGTTCATCACATACTACA 59.010 34.615 0.00 0.00 0.00 2.74
2222 3813 7.661437 ACAAACACAGTTCATCACATACTACAT 59.339 33.333 0.00 0.00 0.00 2.29
2223 3814 8.506437 CAAACACAGTTCATCACATACTACATT 58.494 33.333 0.00 0.00 0.00 2.71
2224 3815 7.601073 ACACAGTTCATCACATACTACATTG 57.399 36.000 0.00 0.00 0.00 2.82
2225 3816 7.161404 ACACAGTTCATCACATACTACATTGT 58.839 34.615 0.00 0.00 0.00 2.71
2226 3817 7.661437 ACACAGTTCATCACATACTACATTGTT 59.339 33.333 0.00 0.00 0.00 2.83
2227 3818 8.171196 CACAGTTCATCACATACTACATTGTTC 58.829 37.037 0.00 0.00 0.00 3.18
2228 3819 7.877612 ACAGTTCATCACATACTACATTGTTCA 59.122 33.333 0.00 0.00 0.00 3.18
2229 3820 8.886719 CAGTTCATCACATACTACATTGTTCAT 58.113 33.333 0.00 0.00 0.00 2.57
2230 3821 9.102757 AGTTCATCACATACTACATTGTTCATC 57.897 33.333 0.00 0.00 0.00 2.92
2231 3822 9.102757 GTTCATCACATACTACATTGTTCATCT 57.897 33.333 0.00 0.00 0.00 2.90
2232 3823 8.877808 TCATCACATACTACATTGTTCATCTC 57.122 34.615 0.00 0.00 0.00 2.75
2233 3824 8.477256 TCATCACATACTACATTGTTCATCTCA 58.523 33.333 0.00 0.00 0.00 3.27
2234 3825 9.269453 CATCACATACTACATTGTTCATCTCAT 57.731 33.333 0.00 0.00 0.00 2.90
2236 3827 9.750125 TCACATACTACATTGTTCATCTCATAC 57.250 33.333 0.00 0.00 0.00 2.39
2237 3828 9.755804 CACATACTACATTGTTCATCTCATACT 57.244 33.333 0.00 0.00 0.00 2.12
2252 3843 9.354673 TCATCTCATACTACATAGTTCATCACA 57.645 33.333 0.00 0.00 37.73 3.58
2253 3844 9.404348 CATCTCATACTACATAGTTCATCACAC 57.596 37.037 0.00 0.00 37.73 3.82
2254 3845 8.753497 TCTCATACTACATAGTTCATCACACT 57.247 34.615 0.00 0.00 37.73 3.55
2255 3846 9.847224 TCTCATACTACATAGTTCATCACACTA 57.153 33.333 0.00 0.00 37.73 2.74
2256 3847 9.885934 CTCATACTACATAGTTCATCACACTAC 57.114 37.037 0.00 0.00 37.73 2.73
2257 3848 9.403583 TCATACTACATAGTTCATCACACTACA 57.596 33.333 0.00 0.00 37.73 2.74
2260 3851 7.036220 ACTACATAGTTCATCACACTACAAGC 58.964 38.462 0.00 0.00 31.13 4.01
2261 3852 5.793817 ACATAGTTCATCACACTACAAGCA 58.206 37.500 0.00 0.00 29.39 3.91
2262 3853 6.409704 ACATAGTTCATCACACTACAAGCAT 58.590 36.000 0.00 0.00 29.39 3.79
2263 3854 7.555965 ACATAGTTCATCACACTACAAGCATA 58.444 34.615 0.00 0.00 29.39 3.14
2264 3855 7.492669 ACATAGTTCATCACACTACAAGCATAC 59.507 37.037 0.00 0.00 29.39 2.39
2265 3856 5.793817 AGTTCATCACACTACAAGCATACA 58.206 37.500 0.00 0.00 0.00 2.29
2266 3857 6.409704 AGTTCATCACACTACAAGCATACAT 58.590 36.000 0.00 0.00 0.00 2.29
2267 3858 7.555965 AGTTCATCACACTACAAGCATACATA 58.444 34.615 0.00 0.00 0.00 2.29
2268 3859 7.492669 AGTTCATCACACTACAAGCATACATAC 59.507 37.037 0.00 0.00 0.00 2.39
2269 3860 7.112452 TCATCACACTACAAGCATACATACT 57.888 36.000 0.00 0.00 0.00 2.12
2270 3861 8.232913 TCATCACACTACAAGCATACATACTA 57.767 34.615 0.00 0.00 0.00 1.82
2271 3862 8.860088 TCATCACACTACAAGCATACATACTAT 58.140 33.333 0.00 0.00 0.00 2.12
2272 3863 8.919661 CATCACACTACAAGCATACATACTATG 58.080 37.037 0.00 0.00 0.00 2.23
2273 3864 8.007405 TCACACTACAAGCATACATACTATGT 57.993 34.615 6.90 6.90 46.92 2.29
2274 3865 8.474831 TCACACTACAAGCATACATACTATGTT 58.525 33.333 7.01 0.00 41.63 2.71
2275 3866 9.744468 CACACTACAAGCATACATACTATGTTA 57.256 33.333 7.01 0.00 41.63 2.41
2278 3869 9.477484 ACTACAAGCATACATACTATGTTAAGC 57.523 33.333 7.01 8.90 41.63 3.09
2279 3870 9.698309 CTACAAGCATACATACTATGTTAAGCT 57.302 33.333 7.01 10.71 41.63 3.74
2281 3872 9.698309 ACAAGCATACATACTATGTTAAGCTAG 57.302 33.333 16.59 0.00 41.63 3.42
2282 3873 9.698309 CAAGCATACATACTATGTTAAGCTAGT 57.302 33.333 16.59 0.00 41.63 2.57
2289 3880 9.517868 ACATACTATGTTAAGCTAGTACTAGGG 57.482 37.037 27.24 8.24 41.63 3.53
2290 3881 8.958506 CATACTATGTTAAGCTAGTACTAGGGG 58.041 40.741 27.24 7.55 34.26 4.79
2291 3882 6.313324 ACTATGTTAAGCTAGTACTAGGGGG 58.687 44.000 27.24 7.21 33.87 5.40
2292 3883 4.614967 TGTTAAGCTAGTACTAGGGGGT 57.385 45.455 27.24 8.97 33.87 4.95
2293 3884 4.540715 TGTTAAGCTAGTACTAGGGGGTC 58.459 47.826 27.24 12.85 33.87 4.46
2294 3885 2.361643 AAGCTAGTACTAGGGGGTCG 57.638 55.000 27.24 5.50 33.87 4.79
2295 3886 0.477638 AGCTAGTACTAGGGGGTCGG 59.522 60.000 27.24 4.81 33.87 4.79
2296 3887 0.475906 GCTAGTACTAGGGGGTCGGA 59.524 60.000 27.24 0.00 33.87 4.55
2297 3888 1.075212 GCTAGTACTAGGGGGTCGGAT 59.925 57.143 27.24 0.00 33.87 4.18
2298 3889 2.879345 GCTAGTACTAGGGGGTCGGATC 60.879 59.091 27.24 6.57 33.87 3.36
2299 3890 1.532038 AGTACTAGGGGGTCGGATCT 58.468 55.000 0.00 0.00 0.00 2.75
2300 3891 2.711174 AGTACTAGGGGGTCGGATCTA 58.289 52.381 0.00 0.00 0.00 1.98
2301 3892 3.059097 AGTACTAGGGGGTCGGATCTAA 58.941 50.000 0.00 0.00 0.00 2.10
2302 3893 3.464833 AGTACTAGGGGGTCGGATCTAAA 59.535 47.826 0.00 0.00 0.00 1.85
2303 3894 2.675583 ACTAGGGGGTCGGATCTAAAC 58.324 52.381 0.00 0.00 0.00 2.01
2304 3895 1.612463 CTAGGGGGTCGGATCTAAACG 59.388 57.143 0.00 0.00 0.00 3.60
2305 3896 1.047034 AGGGGGTCGGATCTAAACGG 61.047 60.000 0.00 0.00 0.00 4.44
2306 3897 1.227468 GGGGTCGGATCTAAACGGC 60.227 63.158 0.00 0.00 0.00 5.68
2307 3898 1.590792 GGGTCGGATCTAAACGGCG 60.591 63.158 4.80 4.80 35.17 6.46
2308 3899 1.590792 GGTCGGATCTAAACGGCGG 60.591 63.158 13.24 0.00 35.17 6.13
2309 3900 2.105528 TCGGATCTAAACGGCGGC 59.894 61.111 13.24 0.00 0.00 6.53
2310 3901 3.327754 CGGATCTAAACGGCGGCG 61.328 66.667 31.06 31.06 0.00 6.46
2311 3902 2.105528 GGATCTAAACGGCGGCGA 59.894 61.111 38.93 16.07 0.00 5.54
2312 3903 1.949631 GGATCTAAACGGCGGCGAG 60.950 63.158 38.93 24.45 0.00 5.03
2313 3904 1.949631 GATCTAAACGGCGGCGAGG 60.950 63.158 38.93 21.99 0.00 4.63
2314 3905 2.624437 GATCTAAACGGCGGCGAGGT 62.624 60.000 38.93 21.61 0.00 3.85
2315 3906 2.624437 ATCTAAACGGCGGCGAGGTC 62.624 60.000 38.93 0.00 0.00 3.85
2316 3907 4.781959 TAAACGGCGGCGAGGTCG 62.782 66.667 38.93 8.23 41.63 4.79
2327 3918 4.373116 GAGGTCGCGGCAACTGGA 62.373 66.667 14.93 0.00 0.00 3.86
2328 3919 4.681978 AGGTCGCGGCAACTGGAC 62.682 66.667 14.93 0.00 0.00 4.02
2346 3937 4.803426 GACGCCGTGGAGGAGCTG 62.803 72.222 0.00 0.00 44.30 4.24
2349 3940 4.459089 GCCGTGGAGGAGCTGGAC 62.459 72.222 0.00 0.00 45.00 4.02
2350 3941 4.135153 CCGTGGAGGAGCTGGACG 62.135 72.222 0.00 0.00 45.00 4.79
2351 3942 4.803426 CGTGGAGGAGCTGGACGC 62.803 72.222 0.00 0.00 39.57 5.19
2360 3951 2.183046 GCTGGACGCTCACTCCTC 59.817 66.667 0.00 0.00 35.14 3.71
2361 3952 2.888863 CTGGACGCTCACTCCTCC 59.111 66.667 0.00 0.00 0.00 4.30
2362 3953 1.680651 CTGGACGCTCACTCCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
2363 3954 1.662438 CTGGACGCTCACTCCTCCTC 61.662 65.000 0.00 0.00 0.00 3.71
2364 3955 2.766400 GGACGCTCACTCCTCCTCG 61.766 68.421 0.00 0.00 0.00 4.63
2365 3956 2.034376 ACGCTCACTCCTCCTCGT 59.966 61.111 0.00 0.00 0.00 4.18
2366 3957 1.984321 GACGCTCACTCCTCCTCGTC 61.984 65.000 0.00 0.00 39.25 4.20
2367 3958 2.795297 GCTCACTCCTCCTCGTCG 59.205 66.667 0.00 0.00 0.00 5.12
2368 3959 2.766400 GCTCACTCCTCCTCGTCGG 61.766 68.421 0.00 0.00 0.00 4.79
2369 3960 1.078356 CTCACTCCTCCTCGTCGGA 60.078 63.158 0.00 0.00 40.30 4.55
2376 3967 3.443925 TCCTCGTCGGAGCTGCAG 61.444 66.667 10.11 10.11 39.06 4.41
2377 3968 3.443925 CCTCGTCGGAGCTGCAGA 61.444 66.667 20.43 0.47 39.06 4.26
2378 3969 2.101965 CTCGTCGGAGCTGCAGAG 59.898 66.667 20.43 6.99 32.61 3.35
2379 3970 2.359975 TCGTCGGAGCTGCAGAGA 60.360 61.111 20.43 7.72 0.00 3.10
2380 3971 1.723608 CTCGTCGGAGCTGCAGAGAT 61.724 60.000 20.43 1.27 32.61 2.75
2381 3972 1.299014 CGTCGGAGCTGCAGAGATC 60.299 63.158 20.43 11.60 33.54 2.75
2382 3973 1.299014 GTCGGAGCTGCAGAGATCG 60.299 63.158 20.43 14.65 35.28 3.69
2383 3974 1.452108 TCGGAGCTGCAGAGATCGA 60.452 57.895 20.43 16.72 35.28 3.59
2384 3975 1.299014 CGGAGCTGCAGAGATCGAC 60.299 63.158 20.43 0.00 35.28 4.20
2385 3976 1.812525 GGAGCTGCAGAGATCGACA 59.187 57.895 20.43 0.00 35.28 4.35
2386 3977 0.174389 GGAGCTGCAGAGATCGACAA 59.826 55.000 20.43 0.00 35.28 3.18
2387 3978 1.404717 GGAGCTGCAGAGATCGACAAA 60.405 52.381 20.43 0.00 35.28 2.83
2388 3979 1.658095 GAGCTGCAGAGATCGACAAAC 59.342 52.381 20.43 0.00 0.00 2.93
2389 3980 1.274728 AGCTGCAGAGATCGACAAACT 59.725 47.619 20.43 0.00 0.00 2.66
2390 3981 2.072298 GCTGCAGAGATCGACAAACTT 58.928 47.619 20.43 0.00 0.00 2.66
2391 3982 2.093467 GCTGCAGAGATCGACAAACTTC 59.907 50.000 20.43 0.00 0.00 3.01
2392 3983 3.583806 CTGCAGAGATCGACAAACTTCT 58.416 45.455 8.42 0.00 0.00 2.85
2393 3984 3.579709 TGCAGAGATCGACAAACTTCTC 58.420 45.455 3.73 3.73 35.84 2.87
2394 3985 2.926838 GCAGAGATCGACAAACTTCTCC 59.073 50.000 7.64 0.00 36.16 3.71
2395 3986 3.175152 CAGAGATCGACAAACTTCTCCG 58.825 50.000 7.64 0.00 36.16 4.63
2396 3987 1.921230 GAGATCGACAAACTTCTCCGC 59.079 52.381 0.82 0.00 30.61 5.54
2397 3988 1.000145 GATCGACAAACTTCTCCGCC 59.000 55.000 0.00 0.00 0.00 6.13
2398 3989 0.608640 ATCGACAAACTTCTCCGCCT 59.391 50.000 0.00 0.00 0.00 5.52
2399 3990 0.319555 TCGACAAACTTCTCCGCCTG 60.320 55.000 0.00 0.00 0.00 4.85
2400 3991 1.869690 GACAAACTTCTCCGCCTGC 59.130 57.895 0.00 0.00 0.00 4.85
2401 3992 0.603975 GACAAACTTCTCCGCCTGCT 60.604 55.000 0.00 0.00 0.00 4.24
2402 3993 0.603975 ACAAACTTCTCCGCCTGCTC 60.604 55.000 0.00 0.00 0.00 4.26
2403 3994 1.003233 AAACTTCTCCGCCTGCTCC 60.003 57.895 0.00 0.00 0.00 4.70
2404 3995 2.788191 AAACTTCTCCGCCTGCTCCG 62.788 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.374252 ACGACCAAGCTAGCAACGG 60.374 57.895 18.83 15.87 0.00 4.44
40 41 1.153349 GGATCCTCCACGACCAAGC 60.153 63.158 3.84 0.00 36.28 4.01
93 94 4.996434 GCGGGGGCTGATCATCGG 62.996 72.222 0.00 0.00 0.00 4.18
99 100 4.195334 GATGGTGCGGGGGCTGAT 62.195 66.667 0.00 0.00 0.00 2.90
121 122 0.877071 CTTTGTCTGCCAACGCTCAT 59.123 50.000 0.00 0.00 35.36 2.90
122 123 1.785041 GCTTTGTCTGCCAACGCTCA 61.785 55.000 0.00 0.00 43.10 4.26
138 139 3.003480 GCTCAAATAAGAGGTCACGCTT 58.997 45.455 0.00 0.00 40.04 4.68
143 144 4.686972 CGATCTGCTCAAATAAGAGGTCA 58.313 43.478 0.00 0.00 36.15 4.02
251 267 0.529378 GTCTACGTGAATGGTCCGGT 59.471 55.000 0.00 0.00 0.00 5.28
284 300 3.253061 TGGGGATGTTGCCGGTGA 61.253 61.111 1.90 0.00 0.00 4.02
327 343 5.630680 GTCACGTCCGTCTCTTATGTTTTAA 59.369 40.000 0.00 0.00 0.00 1.52
358 374 2.573009 TCCCATGTCTTGCTCTTCATCA 59.427 45.455 0.00 0.00 0.00 3.07
384 400 1.065109 CGACGATCGTGGGCACATA 59.935 57.895 28.12 0.00 34.72 2.29
480 498 2.794103 CCATCCAACCTGACACATCAA 58.206 47.619 0.00 0.00 33.30 2.57
490 508 2.679716 GAGCCAGCCATCCAACCT 59.320 61.111 0.00 0.00 0.00 3.50
502 520 1.373748 GACAGCGTTAACCGAGCCA 60.374 57.895 0.00 0.00 39.56 4.75
510 528 1.210870 GTGTTCGTGGACAGCGTTAA 58.789 50.000 0.00 0.00 0.00 2.01
513 531 0.944311 GATGTGTTCGTGGACAGCGT 60.944 55.000 0.00 0.00 0.00 5.07
538 556 4.602995 TCATGCTAAACGTTTTTGGACAC 58.397 39.130 20.19 2.21 0.00 3.67
554 572 2.154567 AAACTGCCATCCATCATGCT 57.845 45.000 0.00 0.00 0.00 3.79
557 575 3.181436 CCCTCTAAACTGCCATCCATCAT 60.181 47.826 0.00 0.00 0.00 2.45
567 594 1.207329 ACGTCATCCCCTCTAAACTGC 59.793 52.381 0.00 0.00 0.00 4.40
636 668 1.732941 CGGATGACATTGTTCGGGAA 58.267 50.000 0.00 0.00 0.00 3.97
638 670 1.714899 GGCGGATGACATTGTTCGGG 61.715 60.000 0.00 0.00 0.00 5.14
654 686 2.672996 CCTTTGGACCTGGTGGCG 60.673 66.667 2.82 0.00 36.63 5.69
657 689 0.771127 TCCTTCCTTTGGACCTGGTG 59.229 55.000 2.82 0.00 0.00 4.17
672 709 2.125106 GGAATCGCGGTGCTCCTT 60.125 61.111 6.13 0.00 0.00 3.36
743 2296 9.250624 CCCGTCTTTATCTTCTTTTACTATCTG 57.749 37.037 0.00 0.00 0.00 2.90
747 2300 8.184192 CGTACCCGTCTTTATCTTCTTTTACTA 58.816 37.037 0.00 0.00 0.00 1.82
824 2381 8.863872 ACTAATAATGCTAGGACACACTTTTT 57.136 30.769 0.00 0.00 0.00 1.94
825 2382 8.863872 AACTAATAATGCTAGGACACACTTTT 57.136 30.769 0.00 0.00 0.00 2.27
826 2383 9.953565 TTAACTAATAATGCTAGGACACACTTT 57.046 29.630 0.00 0.00 0.00 2.66
827 2384 9.601217 CTTAACTAATAATGCTAGGACACACTT 57.399 33.333 0.00 0.00 0.00 3.16
828 2385 8.759782 ACTTAACTAATAATGCTAGGACACACT 58.240 33.333 0.00 0.00 0.00 3.55
829 2386 8.943909 ACTTAACTAATAATGCTAGGACACAC 57.056 34.615 0.00 0.00 0.00 3.82
844 2401 9.661563 TGGTTGTCGATTGATTACTTAACTAAT 57.338 29.630 0.00 0.00 0.00 1.73
845 2402 9.491675 TTGGTTGTCGATTGATTACTTAACTAA 57.508 29.630 0.00 0.00 0.00 2.24
846 2403 8.928733 GTTGGTTGTCGATTGATTACTTAACTA 58.071 33.333 0.00 0.00 0.00 2.24
847 2404 7.094933 GGTTGGTTGTCGATTGATTACTTAACT 60.095 37.037 0.00 0.00 0.00 2.24
848 2405 7.019418 GGTTGGTTGTCGATTGATTACTTAAC 58.981 38.462 0.00 0.00 0.00 2.01
851 2408 4.457949 GGGTTGGTTGTCGATTGATTACTT 59.542 41.667 0.00 0.00 0.00 2.24
853 2410 3.128068 GGGGTTGGTTGTCGATTGATTAC 59.872 47.826 0.00 0.00 0.00 1.89
862 2419 0.753848 ACAAAGGGGGTTGGTTGTCG 60.754 55.000 0.00 0.00 32.50 4.35
863 2420 1.037493 GACAAAGGGGGTTGGTTGTC 58.963 55.000 0.00 0.00 42.04 3.18
864 2421 0.397957 GGACAAAGGGGGTTGGTTGT 60.398 55.000 0.00 0.00 36.92 3.32
868 2425 1.901464 CACGGACAAAGGGGGTTGG 60.901 63.158 0.00 0.00 32.50 3.77
872 2429 0.607217 GGTTACACGGACAAAGGGGG 60.607 60.000 0.00 0.00 0.00 5.40
881 2438 1.274167 CAACTGCTAGGGTTACACGGA 59.726 52.381 0.00 0.00 0.00 4.69
901 2458 3.782244 CGTTGCAGAGGCGCACTC 61.782 66.667 10.83 13.78 46.98 3.51
963 2520 1.615392 CCTTCCTCCTTGGTTTGCTTG 59.385 52.381 0.00 0.00 37.07 4.01
986 2543 1.092345 GGCCATCTGCTTTCCTCGAC 61.092 60.000 0.00 0.00 40.92 4.20
1020 2577 2.042843 AGGAGGCCGTCGAGGATT 60.043 61.111 6.70 0.00 45.00 3.01
1066 2623 4.218200 CACCAAGCATATGAACTTGTTCCA 59.782 41.667 16.92 0.21 41.36 3.53
1117 2674 3.282157 CAGCAGCAACACGCAGGT 61.282 61.111 0.00 0.00 46.13 4.00
1145 2702 1.202417 TGAAATAGCTCGAGAAGGCGG 60.202 52.381 18.75 0.00 0.00 6.13
1338 2903 5.265350 CATGAAATATGTCATGCCAACCA 57.735 39.130 20.44 0.00 46.14 3.67
1357 2922 6.762187 TGCAAGTTTGGATTATTATTGCCATG 59.238 34.615 4.73 0.00 40.53 3.66
1460 3050 6.058183 ACATCCAAACAGAGTATATGGCTTC 58.942 40.000 0.00 0.00 0.00 3.86
1464 3054 7.821359 CCAGATACATCCAAACAGAGTATATGG 59.179 40.741 9.32 9.32 43.67 2.74
1480 3070 8.354711 TGTATAAGTCTCCATCCAGATACATC 57.645 38.462 0.00 0.00 0.00 3.06
1573 3163 5.124138 CCAACTCAGACATAGACTACTCGTT 59.876 44.000 0.00 0.00 0.00 3.85
1720 3310 2.415893 CCCGAAATGTGCAATCAAGTCC 60.416 50.000 0.00 0.00 0.00 3.85
1771 3361 2.081462 CACCTTGTTATGGTCGGGAAC 58.919 52.381 0.00 0.00 35.28 3.62
1773 3363 1.354101 ACACCTTGTTATGGTCGGGA 58.646 50.000 0.00 0.00 35.28 5.14
1786 3376 1.613836 ACGACGGAGAGTAACACCTT 58.386 50.000 0.00 0.00 0.00 3.50
1787 3377 1.613836 AACGACGGAGAGTAACACCT 58.386 50.000 0.00 0.00 0.00 4.00
1828 3419 9.787435 TGTAAACCTGTCACTATGAAATAAACT 57.213 29.630 0.00 0.00 0.00 2.66
1836 3427 4.521639 ACGACTGTAAACCTGTCACTATGA 59.478 41.667 0.00 0.00 40.88 2.15
1863 3454 6.379988 AGCCCCTTTTATTCGTGATTTTGTAT 59.620 34.615 0.00 0.00 0.00 2.29
1869 3460 2.427095 GCAGCCCCTTTTATTCGTGATT 59.573 45.455 0.00 0.00 0.00 2.57
1928 3519 7.919690 TCACACTGTCTTGCTAATTATTATGC 58.080 34.615 0.00 0.00 0.00 3.14
1935 3526 6.882610 TGATTTCACACTGTCTTGCTAATT 57.117 33.333 0.00 0.00 0.00 1.40
1936 3527 8.743085 ATATGATTTCACACTGTCTTGCTAAT 57.257 30.769 0.00 0.00 0.00 1.73
1937 3528 8.565896 AATATGATTTCACACTGTCTTGCTAA 57.434 30.769 0.00 0.00 0.00 3.09
1940 3531 9.065871 GTAAAATATGATTTCACACTGTCTTGC 57.934 33.333 0.00 0.00 0.00 4.01
1967 3558 5.063204 TGTTCCAACGAAGACATCAAGATT 58.937 37.500 0.00 0.00 0.00 2.40
1978 3569 5.296035 AGTTTAGGAGTTTGTTCCAACGAAG 59.704 40.000 0.00 0.00 39.84 3.79
1982 3573 5.824097 TGGTAGTTTAGGAGTTTGTTCCAAC 59.176 40.000 0.00 0.00 39.84 3.77
1984 3575 5.633655 TGGTAGTTTAGGAGTTTGTTCCA 57.366 39.130 0.00 0.00 39.84 3.53
1997 3588 3.932822 TCAAAGCGCTGATGGTAGTTTA 58.067 40.909 12.58 0.00 0.00 2.01
2022 3613 5.183713 CCTGCTATTCAACACCTGATGAAAA 59.816 40.000 2.52 0.00 39.64 2.29
2058 3649 0.749649 CGGGATCTGCTAGAGTTGCT 59.250 55.000 0.00 0.00 0.00 3.91
2059 3650 0.878086 GCGGGATCTGCTAGAGTTGC 60.878 60.000 0.00 0.00 0.00 4.17
2060 3651 0.461548 TGCGGGATCTGCTAGAGTTG 59.538 55.000 10.94 0.00 0.00 3.16
2061 3652 1.195115 TTGCGGGATCTGCTAGAGTT 58.805 50.000 10.94 0.00 0.00 3.01
2062 3653 1.195115 TTTGCGGGATCTGCTAGAGT 58.805 50.000 10.94 0.00 0.00 3.24
2063 3654 1.936547 GTTTTGCGGGATCTGCTAGAG 59.063 52.381 10.94 0.00 0.00 2.43
2064 3655 1.277842 TGTTTTGCGGGATCTGCTAGA 59.722 47.619 10.94 0.00 0.00 2.43
2065 3656 1.737838 TGTTTTGCGGGATCTGCTAG 58.262 50.000 10.94 0.00 0.00 3.42
2066 3657 2.016318 CATGTTTTGCGGGATCTGCTA 58.984 47.619 10.94 2.09 0.00 3.49
2067 3658 0.813184 CATGTTTTGCGGGATCTGCT 59.187 50.000 10.94 0.00 0.00 4.24
2068 3659 0.527565 ACATGTTTTGCGGGATCTGC 59.472 50.000 0.00 3.88 0.00 4.26
2069 3660 2.988493 CAAACATGTTTTGCGGGATCTG 59.012 45.455 21.10 3.23 0.00 2.90
2070 3661 2.610232 GCAAACATGTTTTGCGGGATCT 60.610 45.455 21.10 0.00 44.13 2.75
2071 3662 1.726248 GCAAACATGTTTTGCGGGATC 59.274 47.619 21.10 0.57 44.13 3.36
2072 3663 1.794512 GCAAACATGTTTTGCGGGAT 58.205 45.000 21.10 0.00 44.13 3.85
2073 3664 3.280920 GCAAACATGTTTTGCGGGA 57.719 47.368 21.10 0.00 44.13 5.14
2078 3669 2.283884 GTGAACCCGCAAACATGTTTTG 59.716 45.455 21.10 15.67 0.00 2.44
2079 3670 2.545731 GTGAACCCGCAAACATGTTTT 58.454 42.857 21.10 5.86 0.00 2.43
2080 3671 1.535015 CGTGAACCCGCAAACATGTTT 60.535 47.619 18.13 18.13 0.00 2.83
2081 3672 0.030101 CGTGAACCCGCAAACATGTT 59.970 50.000 4.92 4.92 0.00 2.71
2082 3673 0.816018 TCGTGAACCCGCAAACATGT 60.816 50.000 0.00 0.00 0.00 3.21
2083 3674 0.309302 TTCGTGAACCCGCAAACATG 59.691 50.000 0.00 0.00 0.00 3.21
2084 3675 1.025812 TTTCGTGAACCCGCAAACAT 58.974 45.000 0.00 0.00 0.00 2.71
2085 3676 0.809385 TTTTCGTGAACCCGCAAACA 59.191 45.000 0.00 0.00 0.00 2.83
2086 3677 2.048498 GATTTTCGTGAACCCGCAAAC 58.952 47.619 0.00 0.00 0.00 2.93
2087 3678 1.334239 CGATTTTCGTGAACCCGCAAA 60.334 47.619 0.00 0.00 34.72 3.68
2088 3679 0.236187 CGATTTTCGTGAACCCGCAA 59.764 50.000 0.00 0.00 34.72 4.85
2089 3680 1.863491 CGATTTTCGTGAACCCGCA 59.137 52.632 0.00 0.00 34.72 5.69
2090 3681 1.511254 GCGATTTTCGTGAACCCGC 60.511 57.895 0.00 0.00 42.81 6.13
2091 3682 0.515564 AAGCGATTTTCGTGAACCCG 59.484 50.000 0.00 0.00 42.81 5.28
2092 3683 2.699251 AAAGCGATTTTCGTGAACCC 57.301 45.000 0.00 0.00 42.81 4.11
2093 3684 4.557301 CCATAAAAGCGATTTTCGTGAACC 59.443 41.667 15.60 0.00 42.81 3.62
2094 3685 4.557301 CCCATAAAAGCGATTTTCGTGAAC 59.443 41.667 15.60 0.00 42.81 3.18
2095 3686 4.216687 ACCCATAAAAGCGATTTTCGTGAA 59.783 37.500 15.60 0.00 42.81 3.18
2096 3687 3.754323 ACCCATAAAAGCGATTTTCGTGA 59.246 39.130 15.60 0.00 42.81 4.35
2097 3688 4.091453 ACCCATAAAAGCGATTTTCGTG 57.909 40.909 15.60 14.57 42.81 4.35
2098 3689 3.754323 TGACCCATAAAAGCGATTTTCGT 59.246 39.130 15.60 7.51 42.81 3.85
2099 3690 4.349663 TGACCCATAAAAGCGATTTTCG 57.650 40.909 15.60 7.88 43.89 3.46
2100 3691 7.414814 TTTTTGACCCATAAAAGCGATTTTC 57.585 32.000 15.60 0.18 32.27 2.29
2101 3692 7.977789 ATTTTTGACCCATAAAAGCGATTTT 57.022 28.000 16.41 16.41 32.27 1.82
2103 3694 9.744468 GTATATTTTTGACCCATAAAAGCGATT 57.256 29.630 0.00 0.00 0.00 3.34
2104 3695 8.073768 CGTATATTTTTGACCCATAAAAGCGAT 58.926 33.333 0.00 0.00 0.00 4.58
2105 3696 7.411274 CGTATATTTTTGACCCATAAAAGCGA 58.589 34.615 0.00 0.00 0.00 4.93
2106 3697 6.141685 GCGTATATTTTTGACCCATAAAAGCG 59.858 38.462 0.00 0.00 0.00 4.68
2107 3698 6.141685 CGCGTATATTTTTGACCCATAAAAGC 59.858 38.462 0.00 0.00 0.00 3.51
2108 3699 7.190871 ACGCGTATATTTTTGACCCATAAAAG 58.809 34.615 11.67 0.00 0.00 2.27
2109 3700 7.086230 ACGCGTATATTTTTGACCCATAAAA 57.914 32.000 11.67 0.00 0.00 1.52
2110 3701 6.238429 GGACGCGTATATTTTTGACCCATAAA 60.238 38.462 13.97 0.00 0.00 1.40
2111 3702 5.236911 GGACGCGTATATTTTTGACCCATAA 59.763 40.000 13.97 0.00 0.00 1.90
2112 3703 4.751098 GGACGCGTATATTTTTGACCCATA 59.249 41.667 13.97 0.00 0.00 2.74
2113 3704 3.562557 GGACGCGTATATTTTTGACCCAT 59.437 43.478 13.97 0.00 0.00 4.00
2114 3705 2.937799 GGACGCGTATATTTTTGACCCA 59.062 45.455 13.97 0.00 0.00 4.51
2115 3706 2.937799 TGGACGCGTATATTTTTGACCC 59.062 45.455 13.97 4.78 0.00 4.46
2116 3707 4.584394 CTTGGACGCGTATATTTTTGACC 58.416 43.478 13.97 5.40 0.00 4.02
2117 3708 4.026407 GCTTGGACGCGTATATTTTTGAC 58.974 43.478 13.97 0.00 0.00 3.18
2118 3709 3.685272 TGCTTGGACGCGTATATTTTTGA 59.315 39.130 13.97 0.00 0.00 2.69
2119 3710 4.009798 TGCTTGGACGCGTATATTTTTG 57.990 40.909 13.97 0.00 0.00 2.44
2120 3711 3.936453 TCTGCTTGGACGCGTATATTTTT 59.064 39.130 13.97 0.00 0.00 1.94
2121 3712 3.527533 TCTGCTTGGACGCGTATATTTT 58.472 40.909 13.97 0.00 0.00 1.82
2122 3713 3.173668 TCTGCTTGGACGCGTATATTT 57.826 42.857 13.97 0.00 0.00 1.40
2123 3714 2.864343 GTTCTGCTTGGACGCGTATATT 59.136 45.455 13.97 0.00 0.00 1.28
2124 3715 2.470821 GTTCTGCTTGGACGCGTATAT 58.529 47.619 13.97 0.00 0.00 0.86
2125 3716 1.470285 GGTTCTGCTTGGACGCGTATA 60.470 52.381 13.97 0.00 0.00 1.47
2126 3717 0.739813 GGTTCTGCTTGGACGCGTAT 60.740 55.000 13.97 0.00 0.00 3.06
2127 3718 1.373748 GGTTCTGCTTGGACGCGTA 60.374 57.895 13.97 0.00 0.00 4.42
2128 3719 2.665185 GGTTCTGCTTGGACGCGT 60.665 61.111 13.85 13.85 0.00 6.01
2129 3720 3.423154 GGGTTCTGCTTGGACGCG 61.423 66.667 3.53 3.53 0.00 6.01
2130 3721 2.775032 TACGGGTTCTGCTTGGACGC 62.775 60.000 0.00 0.00 0.00 5.19
2131 3722 0.108329 ATACGGGTTCTGCTTGGACG 60.108 55.000 0.00 0.00 0.00 4.79
2132 3723 1.207329 AGATACGGGTTCTGCTTGGAC 59.793 52.381 0.00 0.00 0.00 4.02
2133 3724 1.568504 AGATACGGGTTCTGCTTGGA 58.431 50.000 0.00 0.00 0.00 3.53
2134 3725 3.536956 TTAGATACGGGTTCTGCTTGG 57.463 47.619 0.00 0.00 0.00 3.61
2135 3726 3.621715 GGTTTAGATACGGGTTCTGCTTG 59.378 47.826 0.00 0.00 0.00 4.01
2136 3727 3.518303 AGGTTTAGATACGGGTTCTGCTT 59.482 43.478 0.00 0.00 0.00 3.91
2137 3728 3.105283 AGGTTTAGATACGGGTTCTGCT 58.895 45.455 0.00 0.00 0.00 4.24
2138 3729 3.195661 CAGGTTTAGATACGGGTTCTGC 58.804 50.000 0.00 0.00 0.00 4.26
2139 3730 4.467198 ACAGGTTTAGATACGGGTTCTG 57.533 45.455 0.00 0.00 0.00 3.02
2140 3731 7.562821 AGTTATACAGGTTTAGATACGGGTTCT 59.437 37.037 0.00 0.00 0.00 3.01
2141 3732 7.720442 AGTTATACAGGTTTAGATACGGGTTC 58.280 38.462 0.00 0.00 0.00 3.62
2142 3733 7.666063 AGTTATACAGGTTTAGATACGGGTT 57.334 36.000 0.00 0.00 0.00 4.11
2143 3734 7.342799 TCAAGTTATACAGGTTTAGATACGGGT 59.657 37.037 0.00 0.00 0.00 5.28
2144 3735 7.719483 TCAAGTTATACAGGTTTAGATACGGG 58.281 38.462 0.00 0.00 0.00 5.28
2145 3736 9.590451 TTTCAAGTTATACAGGTTTAGATACGG 57.410 33.333 0.00 0.00 0.00 4.02
2156 3747 9.382244 CGAAAGAAGTTTTTCAAGTTATACAGG 57.618 33.333 9.60 0.00 36.99 4.00
2157 3748 8.892905 GCGAAAGAAGTTTTTCAAGTTATACAG 58.107 33.333 0.00 0.00 36.99 2.74
2158 3749 7.858879 GGCGAAAGAAGTTTTTCAAGTTATACA 59.141 33.333 0.00 0.00 36.99 2.29
2159 3750 7.059147 CGGCGAAAGAAGTTTTTCAAGTTATAC 59.941 37.037 0.00 0.00 36.99 1.47
2160 3751 7.073265 CGGCGAAAGAAGTTTTTCAAGTTATA 58.927 34.615 0.00 0.00 36.99 0.98
2161 3752 5.912955 CGGCGAAAGAAGTTTTTCAAGTTAT 59.087 36.000 0.00 0.00 36.99 1.89
2162 3753 5.267776 CGGCGAAAGAAGTTTTTCAAGTTA 58.732 37.500 0.00 0.00 36.99 2.24
2163 3754 4.102649 CGGCGAAAGAAGTTTTTCAAGTT 58.897 39.130 0.00 0.00 36.99 2.66
2164 3755 3.488553 CCGGCGAAAGAAGTTTTTCAAGT 60.489 43.478 9.30 0.00 36.99 3.16
2165 3756 3.042887 CCGGCGAAAGAAGTTTTTCAAG 58.957 45.455 9.30 0.00 36.99 3.02
2166 3757 2.683867 TCCGGCGAAAGAAGTTTTTCAA 59.316 40.909 9.30 0.00 36.99 2.69
2167 3758 2.289547 CTCCGGCGAAAGAAGTTTTTCA 59.710 45.455 9.30 0.00 36.99 2.69
2168 3759 2.546789 TCTCCGGCGAAAGAAGTTTTTC 59.453 45.455 9.30 2.34 34.48 2.29
2169 3760 2.567985 TCTCCGGCGAAAGAAGTTTTT 58.432 42.857 9.30 0.00 0.00 1.94
2170 3761 2.249844 TCTCCGGCGAAAGAAGTTTT 57.750 45.000 9.30 0.00 0.00 2.43
2171 3762 2.249844 TTCTCCGGCGAAAGAAGTTT 57.750 45.000 9.30 0.00 0.00 2.66
2172 3763 1.871676 GTTTCTCCGGCGAAAGAAGTT 59.128 47.619 19.57 0.00 33.88 2.66
2173 3764 1.070289 AGTTTCTCCGGCGAAAGAAGT 59.930 47.619 19.57 0.00 33.88 3.01
2174 3765 1.461127 CAGTTTCTCCGGCGAAAGAAG 59.539 52.381 19.57 8.95 33.88 2.85
2175 3766 1.508632 CAGTTTCTCCGGCGAAAGAA 58.491 50.000 19.57 14.41 33.88 2.52
2176 3767 0.949105 GCAGTTTCTCCGGCGAAAGA 60.949 55.000 19.57 8.30 33.88 2.52
2177 3768 1.227999 TGCAGTTTCTCCGGCGAAAG 61.228 55.000 19.57 10.39 33.88 2.62
2178 3769 1.227704 TGCAGTTTCTCCGGCGAAA 60.228 52.632 15.48 15.48 0.00 3.46
2179 3770 1.959226 GTGCAGTTTCTCCGGCGAA 60.959 57.895 9.30 1.88 0.00 4.70
2180 3771 2.357034 GTGCAGTTTCTCCGGCGA 60.357 61.111 9.30 0.00 0.00 5.54
2181 3772 1.781025 TTTGTGCAGTTTCTCCGGCG 61.781 55.000 0.00 0.00 0.00 6.46
2182 3773 0.317854 GTTTGTGCAGTTTCTCCGGC 60.318 55.000 0.00 0.00 0.00 6.13
2183 3774 1.021202 TGTTTGTGCAGTTTCTCCGG 58.979 50.000 0.00 0.00 0.00 5.14
2184 3775 1.400142 TGTGTTTGTGCAGTTTCTCCG 59.600 47.619 0.00 0.00 0.00 4.63
2185 3776 2.423538 ACTGTGTTTGTGCAGTTTCTCC 59.576 45.455 0.00 0.00 42.61 3.71
2186 3777 3.764885 ACTGTGTTTGTGCAGTTTCTC 57.235 42.857 0.00 0.00 42.61 2.87
2191 3782 3.016031 TGATGAACTGTGTTTGTGCAGT 58.984 40.909 0.00 0.00 46.61 4.40
2192 3783 3.181498 TGTGATGAACTGTGTTTGTGCAG 60.181 43.478 0.00 0.00 38.58 4.41
2193 3784 2.751806 TGTGATGAACTGTGTTTGTGCA 59.248 40.909 0.00 0.00 0.00 4.57
2194 3785 3.419264 TGTGATGAACTGTGTTTGTGC 57.581 42.857 0.00 0.00 0.00 4.57
2195 3786 6.304356 AGTATGTGATGAACTGTGTTTGTG 57.696 37.500 0.00 0.00 0.00 3.33
2196 3787 6.989759 TGTAGTATGTGATGAACTGTGTTTGT 59.010 34.615 0.00 0.00 0.00 2.83
2197 3788 7.420184 TGTAGTATGTGATGAACTGTGTTTG 57.580 36.000 0.00 0.00 0.00 2.93
2198 3789 8.506437 CAATGTAGTATGTGATGAACTGTGTTT 58.494 33.333 0.00 0.00 0.00 2.83
2199 3790 7.661437 ACAATGTAGTATGTGATGAACTGTGTT 59.339 33.333 0.00 0.00 0.00 3.32
2200 3791 7.161404 ACAATGTAGTATGTGATGAACTGTGT 58.839 34.615 0.00 0.00 0.00 3.72
2201 3792 7.601073 ACAATGTAGTATGTGATGAACTGTG 57.399 36.000 0.00 0.00 0.00 3.66
2202 3793 7.877612 TGAACAATGTAGTATGTGATGAACTGT 59.122 33.333 0.00 0.00 0.00 3.55
2203 3794 8.255394 TGAACAATGTAGTATGTGATGAACTG 57.745 34.615 0.00 0.00 0.00 3.16
2204 3795 9.102757 GATGAACAATGTAGTATGTGATGAACT 57.897 33.333 0.00 0.00 0.00 3.01
2205 3796 9.102757 AGATGAACAATGTAGTATGTGATGAAC 57.897 33.333 0.00 0.00 0.00 3.18
2206 3797 9.317936 GAGATGAACAATGTAGTATGTGATGAA 57.682 33.333 0.00 0.00 0.00 2.57
2207 3798 8.477256 TGAGATGAACAATGTAGTATGTGATGA 58.523 33.333 0.00 0.00 0.00 2.92
2208 3799 8.652810 TGAGATGAACAATGTAGTATGTGATG 57.347 34.615 0.00 0.00 0.00 3.07
2210 3801 9.750125 GTATGAGATGAACAATGTAGTATGTGA 57.250 33.333 0.00 0.00 0.00 3.58
2211 3802 9.755804 AGTATGAGATGAACAATGTAGTATGTG 57.244 33.333 0.00 0.00 0.00 3.21
2226 3817 9.354673 TGTGATGAACTATGTAGTATGAGATGA 57.645 33.333 0.00 0.00 34.99 2.92
2227 3818 9.404348 GTGTGATGAACTATGTAGTATGAGATG 57.596 37.037 0.00 0.00 34.99 2.90
2228 3819 9.360901 AGTGTGATGAACTATGTAGTATGAGAT 57.639 33.333 0.00 0.00 34.99 2.75
2229 3820 8.753497 AGTGTGATGAACTATGTAGTATGAGA 57.247 34.615 0.00 0.00 34.99 3.27
2230 3821 9.885934 GTAGTGTGATGAACTATGTAGTATGAG 57.114 37.037 0.00 0.00 34.99 2.90
2231 3822 9.403583 TGTAGTGTGATGAACTATGTAGTATGA 57.596 33.333 0.00 0.00 34.99 2.15
2234 3825 8.188799 GCTTGTAGTGTGATGAACTATGTAGTA 58.811 37.037 0.00 0.00 34.99 1.82
2235 3826 7.036220 GCTTGTAGTGTGATGAACTATGTAGT 58.964 38.462 0.00 0.00 38.39 2.73
2236 3827 7.035612 TGCTTGTAGTGTGATGAACTATGTAG 58.964 38.462 0.00 0.00 32.94 2.74
2237 3828 6.930731 TGCTTGTAGTGTGATGAACTATGTA 58.069 36.000 0.00 0.00 32.94 2.29
2238 3829 5.793817 TGCTTGTAGTGTGATGAACTATGT 58.206 37.500 0.00 0.00 32.94 2.29
2239 3830 6.915544 ATGCTTGTAGTGTGATGAACTATG 57.084 37.500 0.00 0.00 32.94 2.23
2240 3831 7.555965 TGTATGCTTGTAGTGTGATGAACTAT 58.444 34.615 0.00 0.00 32.94 2.12
2241 3832 6.930731 TGTATGCTTGTAGTGTGATGAACTA 58.069 36.000 0.00 0.00 0.00 2.24
2242 3833 5.793817 TGTATGCTTGTAGTGTGATGAACT 58.206 37.500 0.00 0.00 0.00 3.01
2243 3834 6.668541 ATGTATGCTTGTAGTGTGATGAAC 57.331 37.500 0.00 0.00 0.00 3.18
2244 3835 7.555965 AGTATGTATGCTTGTAGTGTGATGAA 58.444 34.615 0.00 0.00 0.00 2.57
2245 3836 7.112452 AGTATGTATGCTTGTAGTGTGATGA 57.888 36.000 0.00 0.00 0.00 2.92
2246 3837 8.919661 CATAGTATGTATGCTTGTAGTGTGATG 58.080 37.037 1.65 0.00 0.00 3.07
2247 3838 8.642432 ACATAGTATGTATGCTTGTAGTGTGAT 58.358 33.333 14.25 0.00 42.78 3.06
2248 3839 8.007405 ACATAGTATGTATGCTTGTAGTGTGA 57.993 34.615 14.25 0.00 42.78 3.58
2249 3840 8.648557 AACATAGTATGTATGCTTGTAGTGTG 57.351 34.615 16.08 0.00 44.07 3.82
2252 3843 9.477484 GCTTAACATAGTATGTATGCTTGTAGT 57.523 33.333 16.08 0.00 44.07 2.73
2253 3844 9.698309 AGCTTAACATAGTATGTATGCTTGTAG 57.302 33.333 21.62 11.15 44.07 2.74
2255 3846 9.698309 CTAGCTTAACATAGTATGTATGCTTGT 57.302 33.333 27.26 12.28 44.07 3.16
2256 3847 9.698309 ACTAGCTTAACATAGTATGTATGCTTG 57.302 33.333 27.26 26.32 44.07 4.01
2263 3854 9.517868 CCCTAGTACTAGCTTAACATAGTATGT 57.482 37.037 22.39 10.10 36.98 2.29
2264 3855 8.958506 CCCCTAGTACTAGCTTAACATAGTATG 58.041 40.741 22.39 8.66 36.98 2.39
2265 3856 8.114743 CCCCCTAGTACTAGCTTAACATAGTAT 58.885 40.741 22.39 0.00 36.98 2.12
2266 3857 7.074237 ACCCCCTAGTACTAGCTTAACATAGTA 59.926 40.741 22.39 0.00 34.21 1.82
2267 3858 6.125949 ACCCCCTAGTACTAGCTTAACATAGT 60.126 42.308 22.39 7.53 36.28 2.12
2268 3859 6.313324 ACCCCCTAGTACTAGCTTAACATAG 58.687 44.000 22.39 7.12 31.95 2.23
2269 3860 6.285329 ACCCCCTAGTACTAGCTTAACATA 57.715 41.667 22.39 0.00 31.95 2.29
2270 3861 5.146298 GACCCCCTAGTACTAGCTTAACAT 58.854 45.833 22.39 5.40 31.95 2.71
2271 3862 4.540715 GACCCCCTAGTACTAGCTTAACA 58.459 47.826 22.39 0.00 31.95 2.41
2272 3863 3.567585 CGACCCCCTAGTACTAGCTTAAC 59.432 52.174 22.39 12.51 31.95 2.01
2273 3864 3.435601 CCGACCCCCTAGTACTAGCTTAA 60.436 52.174 22.39 0.00 31.95 1.85
2274 3865 2.107204 CCGACCCCCTAGTACTAGCTTA 59.893 54.545 22.39 0.00 31.95 3.09
2275 3866 1.133544 CCGACCCCCTAGTACTAGCTT 60.134 57.143 22.39 7.32 31.95 3.74
2276 3867 0.477638 CCGACCCCCTAGTACTAGCT 59.522 60.000 22.39 5.97 31.95 3.32
2277 3868 0.475906 TCCGACCCCCTAGTACTAGC 59.524 60.000 22.39 8.99 31.95 3.42
2278 3869 2.643801 AGATCCGACCCCCTAGTACTAG 59.356 54.545 21.11 21.11 0.00 2.57
2279 3870 2.711174 AGATCCGACCCCCTAGTACTA 58.289 52.381 1.89 1.89 0.00 1.82
2280 3871 1.532038 AGATCCGACCCCCTAGTACT 58.468 55.000 0.00 0.00 0.00 2.73
2281 3872 3.515602 TTAGATCCGACCCCCTAGTAC 57.484 52.381 0.00 0.00 0.00 2.73
2282 3873 3.748668 CGTTTAGATCCGACCCCCTAGTA 60.749 52.174 0.00 0.00 0.00 1.82
2283 3874 2.675583 GTTTAGATCCGACCCCCTAGT 58.324 52.381 0.00 0.00 0.00 2.57
2284 3875 1.612463 CGTTTAGATCCGACCCCCTAG 59.388 57.143 0.00 0.00 0.00 3.02
2285 3876 1.696063 CGTTTAGATCCGACCCCCTA 58.304 55.000 0.00 0.00 0.00 3.53
2286 3877 1.047034 CCGTTTAGATCCGACCCCCT 61.047 60.000 0.00 0.00 0.00 4.79
2287 3878 1.444672 CCGTTTAGATCCGACCCCC 59.555 63.158 0.00 0.00 0.00 5.40
2288 3879 1.227468 GCCGTTTAGATCCGACCCC 60.227 63.158 0.00 0.00 0.00 4.95
2289 3880 1.590792 CGCCGTTTAGATCCGACCC 60.591 63.158 0.00 0.00 0.00 4.46
2290 3881 1.590792 CCGCCGTTTAGATCCGACC 60.591 63.158 0.00 0.00 0.00 4.79
2291 3882 2.235699 GCCGCCGTTTAGATCCGAC 61.236 63.158 0.00 0.00 0.00 4.79
2292 3883 2.105528 GCCGCCGTTTAGATCCGA 59.894 61.111 0.00 0.00 0.00 4.55
2293 3884 3.327754 CGCCGCCGTTTAGATCCG 61.328 66.667 0.00 0.00 0.00 4.18
2294 3885 1.949631 CTCGCCGCCGTTTAGATCC 60.950 63.158 0.00 0.00 35.54 3.36
2295 3886 1.949631 CCTCGCCGCCGTTTAGATC 60.950 63.158 0.00 0.00 35.54 2.75
2296 3887 2.106332 CCTCGCCGCCGTTTAGAT 59.894 61.111 0.00 0.00 35.54 1.98
2297 3888 3.346631 GACCTCGCCGCCGTTTAGA 62.347 63.158 0.00 0.00 35.54 2.10
2298 3889 2.884207 GACCTCGCCGCCGTTTAG 60.884 66.667 0.00 0.00 35.54 1.85
2299 3890 4.781959 CGACCTCGCCGCCGTTTA 62.782 66.667 0.00 0.00 35.54 2.01
2310 3901 4.373116 TCCAGTTGCCGCGACCTC 62.373 66.667 8.23 0.00 0.00 3.85
2311 3902 4.681978 GTCCAGTTGCCGCGACCT 62.682 66.667 8.23 0.00 0.00 3.85
2329 3920 4.803426 CAGCTCCTCCACGGCGTC 62.803 72.222 10.85 0.00 0.00 5.19
2332 3923 4.459089 GTCCAGCTCCTCCACGGC 62.459 72.222 0.00 0.00 0.00 5.68
2333 3924 4.135153 CGTCCAGCTCCTCCACGG 62.135 72.222 0.00 0.00 0.00 4.94
2334 3925 4.803426 GCGTCCAGCTCCTCCACG 62.803 72.222 0.00 0.00 44.04 4.94
2344 3935 1.662438 GAGGAGGAGTGAGCGTCCAG 61.662 65.000 0.00 0.00 43.49 3.86
2345 3936 1.679305 GAGGAGGAGTGAGCGTCCA 60.679 63.158 0.00 0.00 43.49 4.02
2346 3937 2.766400 CGAGGAGGAGTGAGCGTCC 61.766 68.421 0.00 0.00 41.85 4.79
2347 3938 1.984321 GACGAGGAGGAGTGAGCGTC 61.984 65.000 0.00 0.00 40.75 5.19
2348 3939 2.034376 ACGAGGAGGAGTGAGCGT 59.966 61.111 0.00 0.00 0.00 5.07
2349 3940 2.795297 GACGAGGAGGAGTGAGCG 59.205 66.667 0.00 0.00 0.00 5.03
2350 3941 2.766400 CCGACGAGGAGGAGTGAGC 61.766 68.421 0.00 0.00 45.00 4.26
2351 3942 1.078356 TCCGACGAGGAGGAGTGAG 60.078 63.158 0.00 0.00 45.98 3.51
2352 3943 3.075186 TCCGACGAGGAGGAGTGA 58.925 61.111 0.00 0.00 45.98 3.41
2360 3951 3.408501 CTCTGCAGCTCCGACGAGG 62.409 68.421 9.47 0.00 42.97 4.63
2361 3952 1.723608 ATCTCTGCAGCTCCGACGAG 61.724 60.000 9.47 0.00 39.33 4.18
2362 3953 1.719725 GATCTCTGCAGCTCCGACGA 61.720 60.000 9.47 0.00 0.00 4.20
2363 3954 1.299014 GATCTCTGCAGCTCCGACG 60.299 63.158 9.47 0.00 0.00 5.12
2364 3955 1.299014 CGATCTCTGCAGCTCCGAC 60.299 63.158 9.47 0.00 0.00 4.79
2365 3956 1.452108 TCGATCTCTGCAGCTCCGA 60.452 57.895 9.47 12.03 0.00 4.55
2366 3957 1.299014 GTCGATCTCTGCAGCTCCG 60.299 63.158 9.47 9.83 0.00 4.63
2367 3958 0.174389 TTGTCGATCTCTGCAGCTCC 59.826 55.000 9.47 0.00 0.00 4.70
2368 3959 1.658095 GTTTGTCGATCTCTGCAGCTC 59.342 52.381 9.47 4.79 0.00 4.09
2369 3960 1.274728 AGTTTGTCGATCTCTGCAGCT 59.725 47.619 9.47 0.00 0.00 4.24
2370 3961 1.719600 AGTTTGTCGATCTCTGCAGC 58.280 50.000 9.47 0.00 0.00 5.25
2371 3962 3.583806 AGAAGTTTGTCGATCTCTGCAG 58.416 45.455 7.63 7.63 0.00 4.41
2372 3963 3.579709 GAGAAGTTTGTCGATCTCTGCA 58.420 45.455 4.56 0.00 36.29 4.41
2373 3964 2.926838 GGAGAAGTTTGTCGATCTCTGC 59.073 50.000 10.41 0.00 38.64 4.26
2374 3965 3.175152 CGGAGAAGTTTGTCGATCTCTG 58.825 50.000 10.41 8.26 38.64 3.35
2375 3966 2.416162 GCGGAGAAGTTTGTCGATCTCT 60.416 50.000 10.41 0.00 38.64 3.10
2376 3967 1.921230 GCGGAGAAGTTTGTCGATCTC 59.079 52.381 3.36 3.36 38.04 2.75
2377 3968 1.404315 GGCGGAGAAGTTTGTCGATCT 60.404 52.381 0.00 0.00 0.00 2.75
2378 3969 1.000145 GGCGGAGAAGTTTGTCGATC 59.000 55.000 0.00 0.00 0.00 3.69
2379 3970 0.608640 AGGCGGAGAAGTTTGTCGAT 59.391 50.000 0.00 0.00 0.00 3.59
2380 3971 0.319555 CAGGCGGAGAAGTTTGTCGA 60.320 55.000 0.00 0.00 0.00 4.20
2381 3972 1.901650 GCAGGCGGAGAAGTTTGTCG 61.902 60.000 0.00 0.00 0.00 4.35
2382 3973 0.603975 AGCAGGCGGAGAAGTTTGTC 60.604 55.000 0.00 0.00 0.00 3.18
2383 3974 0.603975 GAGCAGGCGGAGAAGTTTGT 60.604 55.000 0.00 0.00 0.00 2.83
2384 3975 1.301677 GGAGCAGGCGGAGAAGTTTG 61.302 60.000 0.00 0.00 0.00 2.93
2385 3976 1.003233 GGAGCAGGCGGAGAAGTTT 60.003 57.895 0.00 0.00 0.00 2.66
2386 3977 2.665603 GGAGCAGGCGGAGAAGTT 59.334 61.111 0.00 0.00 0.00 2.66
2387 3978 3.764466 CGGAGCAGGCGGAGAAGT 61.764 66.667 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.