Multiple sequence alignment - TraesCS5A01G088300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G088300 chr5A 100.000 2573 0 0 1 2573 118671998 118669426 0.000000e+00 4752.0
1 TraesCS5A01G088300 chr5B 92.540 2346 108 27 3 2318 123761957 123759649 0.000000e+00 3301.0
2 TraesCS5A01G088300 chr5B 95.753 259 11 0 2309 2567 123759238 123758980 3.960000e-113 418.0
3 TraesCS5A01G088300 chr5D 95.295 1913 52 10 661 2567 113392093 113390213 0.000000e+00 3000.0
4 TraesCS5A01G088300 chr5D 93.463 566 28 5 1 562 113392954 113392394 0.000000e+00 832.0
5 TraesCS5A01G088300 chr5D 94.444 36 2 0 858 893 285247437 285247472 3.580000e-04 56.5
6 TraesCS5A01G088300 chr6A 84.524 84 11 2 1183 1265 520869922 520870004 5.900000e-12 82.4
7 TraesCS5A01G088300 chr6A 90.000 50 5 0 864 913 63610630 63610581 5.940000e-07 65.8
8 TraesCS5A01G088300 chr6D 84.146 82 11 2 1185 1265 379723987 379723907 7.630000e-11 78.7
9 TraesCS5A01G088300 chr6D 90.000 50 5 0 864 913 52724690 52724641 5.940000e-07 65.8
10 TraesCS5A01G088300 chr6D 84.375 64 8 2 1183 1245 115021148 115021086 7.690000e-06 62.1
11 TraesCS5A01G088300 chr7D 82.927 82 12 2 1185 1265 136253322 136253242 3.550000e-09 73.1
12 TraesCS5A01G088300 chr7B 88.333 60 7 0 1185 1244 99130768 99130709 3.550000e-09 73.1
13 TraesCS5A01G088300 chr6B 90.000 50 5 0 864 913 119849602 119849553 5.940000e-07 65.8
14 TraesCS5A01G088300 chr6B 84.375 64 8 2 1183 1245 204333994 204333932 7.690000e-06 62.1
15 TraesCS5A01G088300 chr3D 87.037 54 7 0 861 914 252334801 252334854 7.690000e-06 62.1
16 TraesCS5A01G088300 chr3B 87.037 54 7 0 861 914 313808034 313808087 7.690000e-06 62.1
17 TraesCS5A01G088300 chr3A 88.235 51 6 0 864 914 332220134 332220084 7.690000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G088300 chr5A 118669426 118671998 2572 True 4752.0 4752 100.0000 1 2573 1 chr5A.!!$R1 2572
1 TraesCS5A01G088300 chr5B 123758980 123761957 2977 True 1859.5 3301 94.1465 3 2567 2 chr5B.!!$R1 2564
2 TraesCS5A01G088300 chr5D 113390213 113392954 2741 True 1916.0 3000 94.3790 1 2567 2 chr5D.!!$R1 2566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 909 0.324943 GGGAGCTGCTGTTCTTGGTA 59.675 55.0 7.01 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2240 0.396435 CACAGACTTGGTGTGGGCTA 59.604 55.0 0.32 0.0 41.43 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.954335 AGCCAGTGCATATAAAGTGTTTTC 58.046 37.500 0.00 0.00 41.13 2.29
112 113 1.403679 CGAGCCACCTGTCAAAACAAA 59.596 47.619 0.00 0.00 34.24 2.83
113 114 2.794631 CGAGCCACCTGTCAAAACAAAC 60.795 50.000 0.00 0.00 34.24 2.93
118 119 4.753233 CCACCTGTCAAAACAAACATGAA 58.247 39.130 0.00 0.00 34.24 2.57
119 120 5.358922 CCACCTGTCAAAACAAACATGAAT 58.641 37.500 0.00 0.00 34.24 2.57
120 121 6.511416 CCACCTGTCAAAACAAACATGAATA 58.489 36.000 0.00 0.00 34.24 1.75
122 123 7.656948 CCACCTGTCAAAACAAACATGAATAAT 59.343 33.333 0.00 0.00 34.24 1.28
123 124 9.689976 CACCTGTCAAAACAAACATGAATAATA 57.310 29.630 0.00 0.00 34.24 0.98
124 125 9.691362 ACCTGTCAAAACAAACATGAATAATAC 57.309 29.630 0.00 0.00 34.24 1.89
125 126 8.849490 CCTGTCAAAACAAACATGAATAATACG 58.151 33.333 0.00 0.00 34.24 3.06
126 127 9.605955 CTGTCAAAACAAACATGAATAATACGA 57.394 29.630 0.00 0.00 34.24 3.43
127 128 9.388346 TGTCAAAACAAACATGAATAATACGAC 57.612 29.630 0.00 0.00 30.70 4.34
317 323 2.555227 GGACCAGCAAAGATTCCTCCAA 60.555 50.000 0.00 0.00 0.00 3.53
439 445 2.802057 GCGTGTGAAGTTACAGGAGTGT 60.802 50.000 0.00 0.00 38.38 3.55
444 450 4.163458 TGTGAAGTTACAGGAGTGTCCTTT 59.837 41.667 0.00 0.00 46.91 3.11
541 547 1.930908 GCTGCCATTGCTCTCCACAC 61.931 60.000 0.00 0.00 38.71 3.82
544 557 0.682209 GCCATTGCTCTCCACACCAT 60.682 55.000 0.00 0.00 33.53 3.55
583 596 0.826715 TCATCACCACTCTGCTAGCC 59.173 55.000 13.29 0.00 0.00 3.93
600 613 1.950973 GCCCGAGTCTCCCTCTTGAC 61.951 65.000 0.00 0.00 38.11 3.18
601 614 1.324005 CCCGAGTCTCCCTCTTGACC 61.324 65.000 0.00 0.00 38.11 4.02
603 616 0.612174 CGAGTCTCCCTCTTGACCCA 60.612 60.000 0.00 0.00 38.11 4.51
609 622 2.261671 CCTCTTGACCCACCGTCG 59.738 66.667 0.00 0.00 45.23 5.12
615 628 1.969200 TTGACCCACCGTCGGTTTCA 61.969 55.000 15.97 14.54 45.23 2.69
616 629 1.666872 GACCCACCGTCGGTTTCAG 60.667 63.158 15.97 2.99 31.02 3.02
618 631 3.047877 CCACCGTCGGTTTCAGGC 61.048 66.667 15.97 0.00 31.02 4.85
623 636 2.654877 GTCGGTTTCAGGCCTCGA 59.345 61.111 0.00 5.68 0.00 4.04
628 641 1.095600 GGTTTCAGGCCTCGAAATCC 58.904 55.000 24.04 21.77 35.01 3.01
649 662 1.075698 TCGTCCCAGTCTCTTTCTCCT 59.924 52.381 0.00 0.00 0.00 3.69
651 664 2.300437 CGTCCCAGTCTCTTTCTCCTTT 59.700 50.000 0.00 0.00 0.00 3.11
655 668 4.040952 TCCCAGTCTCTTTCTCCTTTCAAG 59.959 45.833 0.00 0.00 0.00 3.02
692 907 0.676151 GAGGGAGCTGCTGTTCTTGG 60.676 60.000 7.01 0.00 0.00 3.61
694 909 0.324943 GGGAGCTGCTGTTCTTGGTA 59.675 55.000 7.01 0.00 0.00 3.25
695 910 1.677217 GGGAGCTGCTGTTCTTGGTAG 60.677 57.143 7.01 0.00 0.00 3.18
696 911 1.677217 GGAGCTGCTGTTCTTGGTAGG 60.677 57.143 7.01 0.00 0.00 3.18
697 912 1.276421 GAGCTGCTGTTCTTGGTAGGA 59.724 52.381 7.01 0.00 0.00 2.94
698 913 1.002544 AGCTGCTGTTCTTGGTAGGAC 59.997 52.381 0.00 0.00 0.00 3.85
725 941 1.461075 CCAGATCTGGGGGAGAGGG 60.461 68.421 31.14 4.70 46.81 4.30
731 947 3.882670 TGGGGGAGAGGGTGGGTT 61.883 66.667 0.00 0.00 0.00 4.11
923 1139 4.907269 TGTGATCTCATAATTGGCCCTCTA 59.093 41.667 0.00 0.00 0.00 2.43
975 1194 8.759481 ATTTTCTCCTTCTTCTTGTTCTTCTT 57.241 30.769 0.00 0.00 0.00 2.52
1022 1241 5.753921 AGTGATAAATAAGAACCGTAGCAGC 59.246 40.000 0.00 0.00 0.00 5.25
1023 1242 5.522460 GTGATAAATAAGAACCGTAGCAGCA 59.478 40.000 0.00 0.00 0.00 4.41
1024 1243 5.753438 TGATAAATAAGAACCGTAGCAGCAG 59.247 40.000 0.00 0.00 0.00 4.24
1025 1244 1.941325 ATAAGAACCGTAGCAGCAGC 58.059 50.000 0.00 0.00 42.56 5.25
1026 1245 0.606096 TAAGAACCGTAGCAGCAGCA 59.394 50.000 3.17 0.00 45.49 4.41
1027 1246 0.036010 AAGAACCGTAGCAGCAGCAT 60.036 50.000 3.17 0.00 45.49 3.79
1028 1247 0.460987 AGAACCGTAGCAGCAGCATC 60.461 55.000 3.17 0.00 45.49 3.91
1029 1248 0.740868 GAACCGTAGCAGCAGCATCA 60.741 55.000 3.17 0.00 45.49 3.07
1030 1249 0.107508 AACCGTAGCAGCAGCATCAT 60.108 50.000 3.17 0.00 45.49 2.45
1031 1250 0.531532 ACCGTAGCAGCAGCATCATC 60.532 55.000 3.17 0.00 45.49 2.92
1032 1251 0.531311 CCGTAGCAGCAGCATCATCA 60.531 55.000 3.17 0.00 45.49 3.07
1033 1252 1.509703 CGTAGCAGCAGCATCATCAT 58.490 50.000 3.17 0.00 45.49 2.45
1056 1284 2.166664 AGCAGCAGTAGTAGCCAAGTAC 59.833 50.000 0.00 0.00 34.64 2.73
1598 1826 0.189822 GAGGATCCCCTGTAGGAGCT 59.810 60.000 8.55 0.00 44.53 4.09
1636 1864 4.357325 TGGCAAGAGGAAGAAGATCTACT 58.643 43.478 0.00 0.00 0.00 2.57
1739 1977 3.203412 CGTCGTCCTCCTCCTCCG 61.203 72.222 0.00 0.00 0.00 4.63
1882 2120 4.275689 CCAGTGTTCAGTGTAAATTCTGCA 59.724 41.667 6.84 0.00 0.00 4.41
1981 2219 3.130340 TGAAGAACAGTTTGGCCAGTTTC 59.870 43.478 5.11 5.69 0.00 2.78
2018 2256 3.306472 TTTTTAGCCCACACCAAGTCT 57.694 42.857 0.00 0.00 0.00 3.24
2021 2259 0.396435 TAGCCCACACCAAGTCTGTG 59.604 55.000 0.00 0.00 39.05 3.66
2039 2277 3.346315 TGTGTAAATCTGTGGGCTCATG 58.654 45.455 0.00 0.00 0.00 3.07
2074 2312 1.134280 AGGTGGAAGGCATCGAATCAG 60.134 52.381 0.00 0.00 0.00 2.90
2093 2331 2.032204 CAGCTTGAGTGCAGAGAAACAC 60.032 50.000 0.00 0.00 37.05 3.32
2177 2415 6.551385 CAGCTCTCTGTTCTATGTTGTTTT 57.449 37.500 0.00 0.00 35.61 2.43
2178 2416 7.658179 CAGCTCTCTGTTCTATGTTGTTTTA 57.342 36.000 0.00 0.00 35.61 1.52
2182 2420 9.899226 GCTCTCTGTTCTATGTTGTTTTATTTT 57.101 29.630 0.00 0.00 0.00 1.82
2188 2426 9.809096 TGTTCTATGTTGTTTTATTTTCTTGCA 57.191 25.926 0.00 0.00 0.00 4.08
2208 2446 4.467082 TGCATGCATCTATTCCAACCTTTT 59.533 37.500 18.46 0.00 0.00 2.27
2211 2449 6.684613 GCATGCATCTATTCCAACCTTTTCAT 60.685 38.462 14.21 0.00 0.00 2.57
2267 2505 3.190079 CACTAGGTCACAATCCATGTCG 58.810 50.000 0.00 0.00 41.46 4.35
2288 2532 5.293324 GTCGCAACCATCAAGATATGTGTTA 59.707 40.000 0.00 0.00 0.00 2.41
2307 2551 1.308998 ACAACAGGGAAGAAACAGCG 58.691 50.000 0.00 0.00 0.00 5.18
2348 3012 4.811555 TCAGTAATCACGCAATAATGGC 57.188 40.909 0.00 0.00 0.00 4.40
2356 3020 4.450976 TCACGCAATAATGGCTAATGACT 58.549 39.130 0.00 0.00 0.00 3.41
2361 3025 5.615544 CGCAATAATGGCTAATGACTGTAGC 60.616 44.000 0.00 0.00 42.73 3.58
2404 3068 4.921515 TCCGTCATCAGAAAACTAAACTCG 59.078 41.667 0.00 0.00 0.00 4.18
2505 3169 6.266558 ACCAGATAGAAGAGCACCAGTTATAG 59.733 42.308 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 7.224557 GGCTCGCATTGTAATTTTGGATTTATT 59.775 33.333 0.00 0.00 0.00 1.40
95 96 2.663826 TGTTTGTTTTGACAGGTGGC 57.336 45.000 0.00 0.00 0.00 5.01
112 113 3.640029 AGGGGTCGTCGTATTATTCATGT 59.360 43.478 0.00 0.00 0.00 3.21
113 114 4.235360 GAGGGGTCGTCGTATTATTCATG 58.765 47.826 0.00 0.00 0.00 3.07
118 119 3.448301 TGTTTGAGGGGTCGTCGTATTAT 59.552 43.478 0.00 0.00 0.00 1.28
119 120 2.824936 TGTTTGAGGGGTCGTCGTATTA 59.175 45.455 0.00 0.00 0.00 0.98
120 121 1.619827 TGTTTGAGGGGTCGTCGTATT 59.380 47.619 0.00 0.00 0.00 1.89
122 123 1.039068 TTGTTTGAGGGGTCGTCGTA 58.961 50.000 0.00 0.00 0.00 3.43
123 124 0.178533 TTTGTTTGAGGGGTCGTCGT 59.821 50.000 0.00 0.00 0.00 4.34
124 125 0.584876 GTTTGTTTGAGGGGTCGTCG 59.415 55.000 0.00 0.00 0.00 5.12
125 126 1.332686 GTGTTTGTTTGAGGGGTCGTC 59.667 52.381 0.00 0.00 0.00 4.20
126 127 1.385528 GTGTTTGTTTGAGGGGTCGT 58.614 50.000 0.00 0.00 0.00 4.34
127 128 0.306533 CGTGTTTGTTTGAGGGGTCG 59.693 55.000 0.00 0.00 0.00 4.79
222 225 1.693627 TTTCCCCAAAACGCTAAGCA 58.306 45.000 0.00 0.00 0.00 3.91
230 233 2.169561 TGGAGTTGCTTTTCCCCAAAAC 59.830 45.455 0.00 0.00 32.29 2.43
317 323 1.619160 GGACGGAGAGGGTAGAAAGGT 60.619 57.143 0.00 0.00 0.00 3.50
373 379 2.928116 CGAGGGTGTTTCCGTAATTCTC 59.072 50.000 0.00 0.00 37.00 2.87
375 381 2.004733 CCGAGGGTGTTTCCGTAATTC 58.995 52.381 0.00 0.00 37.00 2.17
400 406 1.152383 GCGAGGGCGTTCTGGTAATC 61.152 60.000 0.00 0.00 40.36 1.75
439 445 2.838637 ATTTATTGGCGGGGAAAGGA 57.161 45.000 0.00 0.00 0.00 3.36
444 450 1.133419 GGGGTTATTTATTGGCGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
600 613 2.358247 CCTGAAACCGACGGTGGG 60.358 66.667 22.53 16.07 35.34 4.61
601 614 3.047877 GCCTGAAACCGACGGTGG 61.048 66.667 22.53 18.20 35.34 4.61
603 616 3.236003 GAGGCCTGAAACCGACGGT 62.236 63.158 12.00 15.37 37.65 4.83
609 622 1.095600 GGATTTCGAGGCCTGAAACC 58.904 55.000 23.84 21.65 38.08 3.27
623 636 2.239681 AGAGACTGGGACGAGGATTT 57.760 50.000 0.00 0.00 0.00 2.17
628 641 1.474879 GGAGAAAGAGACTGGGACGAG 59.525 57.143 0.00 0.00 0.00 4.18
655 668 4.832823 TCCCTCAACCCAAAGAAATTCTTC 59.167 41.667 8.86 0.00 35.27 2.87
708 923 1.053264 CACCCTCTCCCCCAGATCTG 61.053 65.000 16.24 16.24 0.00 2.90
725 941 0.248866 CAAGCGGAACAACAACCCAC 60.249 55.000 0.00 0.00 0.00 4.61
731 947 3.250762 CAGAGATTTCAAGCGGAACAACA 59.749 43.478 0.00 0.00 34.56 3.33
923 1139 2.171725 GCTAGCGACGGCGGATTTT 61.172 57.895 15.06 0.00 46.35 1.82
967 1186 4.794329 GCAGGAAAAGGAAGCAAGAAGAAC 60.794 45.833 0.00 0.00 0.00 3.01
975 1194 0.179032 TGACGCAGGAAAAGGAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
1022 1241 1.265365 CTGCTGCTGATGATGATGCTG 59.735 52.381 0.00 0.00 0.00 4.41
1023 1242 1.134068 ACTGCTGCTGATGATGATGCT 60.134 47.619 13.69 0.00 0.00 3.79
1024 1243 1.309950 ACTGCTGCTGATGATGATGC 58.690 50.000 13.69 0.00 0.00 3.91
1025 1244 3.729966 ACTACTGCTGCTGATGATGATG 58.270 45.455 13.69 0.00 0.00 3.07
1026 1245 4.561123 GCTACTACTGCTGCTGATGATGAT 60.561 45.833 13.69 0.00 0.00 2.45
1027 1246 3.243670 GCTACTACTGCTGCTGATGATGA 60.244 47.826 13.69 0.00 0.00 2.92
1028 1247 3.058450 GCTACTACTGCTGCTGATGATG 58.942 50.000 13.69 2.20 0.00 3.07
1029 1248 2.036992 GGCTACTACTGCTGCTGATGAT 59.963 50.000 13.69 0.00 0.00 2.45
1030 1249 1.410517 GGCTACTACTGCTGCTGATGA 59.589 52.381 13.69 0.00 0.00 2.92
1031 1250 1.137675 TGGCTACTACTGCTGCTGATG 59.862 52.381 13.69 7.58 0.00 3.07
1032 1251 1.489481 TGGCTACTACTGCTGCTGAT 58.511 50.000 13.69 0.76 0.00 2.90
1033 1252 1.205655 CTTGGCTACTACTGCTGCTGA 59.794 52.381 13.69 0.00 0.00 4.26
1056 1284 1.207089 TCTTGGCACCGGAATCACTAG 59.793 52.381 9.46 0.00 0.00 2.57
1775 2013 9.639601 CGATACATAGAACACAACCATACATAT 57.360 33.333 0.00 0.00 0.00 1.78
1776 2014 8.635328 ACGATACATAGAACACAACCATACATA 58.365 33.333 0.00 0.00 0.00 2.29
1777 2015 7.438160 CACGATACATAGAACACAACCATACAT 59.562 37.037 0.00 0.00 0.00 2.29
1882 2120 8.691661 ACACTTGAATTATTACTTGGAACACT 57.308 30.769 0.00 0.00 39.29 3.55
1923 2161 0.472471 ACCAACATCCGGTGACTGTT 59.528 50.000 0.00 5.03 34.69 3.16
2002 2240 0.396435 CACAGACTTGGTGTGGGCTA 59.604 55.000 0.32 0.00 41.43 3.93
2018 2256 3.244875 ACATGAGCCCACAGATTTACACA 60.245 43.478 0.00 0.00 0.00 3.72
2021 2259 3.609853 TGACATGAGCCCACAGATTTAC 58.390 45.455 0.00 0.00 0.00 2.01
2039 2277 5.048713 CCTTCCACCTTACTTGTGATTTGAC 60.049 44.000 0.00 0.00 35.74 3.18
2074 2312 1.265365 GGTGTTTCTCTGCACTCAAGC 59.735 52.381 0.00 0.00 36.03 4.01
2093 2331 2.224606 TCTCTGCTTTTGAGCACTTGG 58.775 47.619 0.00 0.00 40.23 3.61
2177 2415 7.585579 TGGAATAGATGCATGCAAGAAAATA 57.414 32.000 26.68 11.33 0.00 1.40
2178 2416 6.474140 TGGAATAGATGCATGCAAGAAAAT 57.526 33.333 26.68 6.72 0.00 1.82
2182 2420 3.633525 GGTTGGAATAGATGCATGCAAGA 59.366 43.478 26.68 13.24 0.00 3.02
2183 2421 3.635373 AGGTTGGAATAGATGCATGCAAG 59.365 43.478 26.68 0.00 0.00 4.01
2184 2422 3.634504 AGGTTGGAATAGATGCATGCAA 58.365 40.909 26.68 9.06 0.00 4.08
2185 2423 3.301794 AGGTTGGAATAGATGCATGCA 57.698 42.857 25.04 25.04 0.00 3.96
2186 2424 4.660789 AAAGGTTGGAATAGATGCATGC 57.339 40.909 11.82 11.82 0.00 4.06
2187 2425 6.211587 TGAAAAGGTTGGAATAGATGCATG 57.788 37.500 2.46 0.00 0.00 4.06
2188 2426 7.232127 CCTATGAAAAGGTTGGAATAGATGCAT 59.768 37.037 0.00 0.00 31.46 3.96
2208 2446 2.819608 GTCACCTTGCTTTTGCCTATGA 59.180 45.455 0.00 0.00 46.87 2.15
2211 2449 2.356665 TGTCACCTTGCTTTTGCCTA 57.643 45.000 0.00 0.00 46.87 3.93
2259 2497 1.003003 TCTTGATGGTTGCGACATGGA 59.997 47.619 6.39 0.00 0.00 3.41
2267 2505 6.435430 TGTAACACATATCTTGATGGTTGC 57.565 37.500 0.00 0.00 0.00 4.17
2288 2532 1.308998 CGCTGTTTCTTCCCTGTTGT 58.691 50.000 0.00 0.00 0.00 3.32
2307 2551 6.051717 ACTGATCAAAGGTGCTGATGTATAC 58.948 40.000 0.00 0.00 33.63 1.47
2348 3012 4.026475 GCTTGCTTACGCTACAGTCATTAG 60.026 45.833 0.00 0.00 36.97 1.73
2356 3020 2.066262 GTTCTGCTTGCTTACGCTACA 58.934 47.619 0.00 0.00 36.97 2.74
2361 3025 1.698165 TCTCGTTCTGCTTGCTTACG 58.302 50.000 0.00 0.00 0.00 3.18
2404 3068 1.062258 TCGTTTTCGTATGCGGTCAC 58.938 50.000 2.62 0.00 44.46 3.67
2505 3169 4.202050 GGAACAAGCACCATCATTATGACC 60.202 45.833 0.00 0.00 34.84 4.02
2549 3213 5.017490 AGTGAGCTAACAAGCTACTCCTTA 58.983 41.667 3.43 0.00 46.36 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.