Multiple sequence alignment - TraesCS5A01G087600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G087600 chr5A 100.000 3419 0 0 1 3419 117387579 117390997 0.000000e+00 6314.0
1 TraesCS5A01G087600 chr5A 73.391 808 196 13 862 1654 116585847 116585044 2.010000e-72 283.0
2 TraesCS5A01G087600 chr5A 72.027 740 188 13 862 1587 116776394 116775660 5.790000e-48 202.0
3 TraesCS5A01G087600 chr5A 94.444 108 6 0 3059 3166 117390537 117390644 2.110000e-37 167.0
4 TraesCS5A01G087600 chr5A 94.444 108 6 0 2959 3066 117390637 117390744 2.110000e-37 167.0
5 TraesCS5A01G087600 chr5B 97.379 2213 51 4 859 3066 122831836 122834046 0.000000e+00 3759.0
6 TraesCS5A01G087600 chr5B 96.721 854 20 2 1 852 122830943 122831790 0.000000e+00 1415.0
7 TraesCS5A01G087600 chr5B 83.987 893 138 3 859 1746 34720717 34721609 0.000000e+00 852.0
8 TraesCS5A01G087600 chr5B 81.681 595 109 0 1810 2404 34721646 34722240 2.370000e-136 496.0
9 TraesCS5A01G087600 chr5B 95.312 128 6 0 3059 3186 122833939 122834066 1.610000e-48 204.0
10 TraesCS5A01G087600 chr5B 96.875 32 1 0 2971 3002 522324743 522324774 2.000000e-03 54.7
11 TraesCS5A01G087600 chr5D 97.885 1513 27 2 859 2366 109943444 109941932 0.000000e+00 2612.0
12 TraesCS5A01G087600 chr5D 95.621 845 29 3 11 852 109944329 109943490 0.000000e+00 1349.0
13 TraesCS5A01G087600 chr5D 92.157 255 4 3 2812 3066 109940291 109940053 2.530000e-91 346.0
14 TraesCS5A01G087600 chr5D 73.490 811 196 13 859 1654 110367734 110368540 4.320000e-74 289.0
15 TraesCS5A01G087600 chr5D 94.156 154 5 1 2352 2501 109941919 109941766 7.380000e-57 231.0
16 TraesCS5A01G087600 chr5D 96.154 130 5 0 2488 2617 109940591 109940462 2.670000e-51 213.0
17 TraesCS5A01G087600 chr5D 96.000 125 5 0 3062 3186 109940157 109940033 1.610000e-48 204.0
18 TraesCS5A01G087600 chr5D 71.429 812 211 15 859 1654 110349303 110350109 9.680000e-46 195.0
19 TraesCS5A01G087600 chr5D 100.000 28 0 0 2971 2998 433727682 433727655 6.000000e-03 52.8
20 TraesCS5A01G087600 chr5D 100.000 28 0 0 2971 2998 513168987 513169014 6.000000e-03 52.8
21 TraesCS5A01G087600 chr5D 100.000 28 0 0 2971 2998 513249486 513249513 6.000000e-03 52.8
22 TraesCS5A01G087600 chr3D 83.040 908 145 7 859 1759 582017897 582018802 0.000000e+00 815.0
23 TraesCS5A01G087600 chr3D 83.095 420 69 2 420 838 582017419 582017837 6.920000e-102 381.0
24 TraesCS5A01G087600 chr3D 92.308 234 18 0 3186 3419 588206152 588205919 1.970000e-87 333.0
25 TraesCS5A01G087600 chr3B 83.094 905 144 7 862 1759 779546481 779545579 0.000000e+00 815.0
26 TraesCS5A01G087600 chr3B 84.010 419 66 1 420 838 725096738 725097155 5.310000e-108 401.0
27 TraesCS5A01G087600 chr3B 87.054 224 29 0 3192 3415 592324236 592324013 1.570000e-63 254.0
28 TraesCS5A01G087600 chr7B 89.565 230 23 1 3186 3415 84631224 84630996 1.200000e-74 291.0
29 TraesCS5A01G087600 chr7B 86.522 230 31 0 3186 3415 179905981 179906210 1.570000e-63 254.0
30 TraesCS5A01G087600 chr1A 87.554 233 29 0 3183 3415 584002688 584002920 1.560000e-68 270.0
31 TraesCS5A01G087600 chr1B 86.538 52 4 3 2971 3021 314549129 314549178 2.000000e-03 54.7
32 TraesCS5A01G087600 chr2A 94.286 35 1 1 2971 3005 177447237 177447270 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G087600 chr5A 117387579 117390997 3418 False 2216.000000 6314 96.296000 1 3419 3 chr5A.!!$F1 3418
1 TraesCS5A01G087600 chr5A 116585044 116585847 803 True 283.000000 283 73.391000 862 1654 1 chr5A.!!$R1 792
2 TraesCS5A01G087600 chr5A 116775660 116776394 734 True 202.000000 202 72.027000 862 1587 1 chr5A.!!$R2 725
3 TraesCS5A01G087600 chr5B 122830943 122834066 3123 False 1792.666667 3759 96.470667 1 3186 3 chr5B.!!$F3 3185
4 TraesCS5A01G087600 chr5B 34720717 34722240 1523 False 674.000000 852 82.834000 859 2404 2 chr5B.!!$F2 1545
5 TraesCS5A01G087600 chr5D 109940033 109944329 4296 True 825.833333 2612 95.328833 11 3186 6 chr5D.!!$R2 3175
6 TraesCS5A01G087600 chr5D 110367734 110368540 806 False 289.000000 289 73.490000 859 1654 1 chr5D.!!$F2 795
7 TraesCS5A01G087600 chr3D 582017419 582018802 1383 False 598.000000 815 83.067500 420 1759 2 chr3D.!!$F1 1339
8 TraesCS5A01G087600 chr3B 779545579 779546481 902 True 815.000000 815 83.094000 862 1759 1 chr3B.!!$R2 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 353 3.173953 TCATTTGGCATTCAGGAGGTT 57.826 42.857 0.0 0.0 0.00 3.50 F
1847 1911 1.224592 CTTGGTTCCCATCCCCTCG 59.775 63.158 0.0 0.0 31.53 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 2357 1.404315 CGGAAGGAGAGTAACTGTGCC 60.404 57.143 0.0 0.0 0.00 5.01 R
3206 4489 0.035176 GCAGGCAGCCATTTCCAAAA 59.965 50.000 15.8 0.0 37.23 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.831664 AGAAGTGATCCAGTACCCAATTAT 57.168 37.500 0.00 0.00 0.00 1.28
86 87 7.629157 TCTGATAATTGTACAATCCTGGTTCA 58.371 34.615 21.02 14.91 0.00 3.18
236 239 8.594881 ACTCCGTTTCAATATATCTGTTCATC 57.405 34.615 0.00 0.00 0.00 2.92
237 240 8.204160 ACTCCGTTTCAATATATCTGTTCATCA 58.796 33.333 0.00 0.00 0.00 3.07
252 255 7.695055 TCTGTTCATCAAGGAATTAAAGGGTA 58.305 34.615 0.00 0.00 0.00 3.69
347 353 3.173953 TCATTTGGCATTCAGGAGGTT 57.826 42.857 0.00 0.00 0.00 3.50
528 534 6.183360 TGGGAGCAAAATAATGACAACAACTT 60.183 34.615 0.00 0.00 0.00 2.66
548 554 7.827236 ACAACTTGCAGTATTACTATAGCCAAA 59.173 33.333 0.00 0.00 0.00 3.28
830 836 4.903045 AAAAGATCCCGGTGTAGAAGAA 57.097 40.909 0.00 0.00 0.00 2.52
841 847 6.371389 CCGGTGTAGAAGAAATGAGAAAAAC 58.629 40.000 0.00 0.00 0.00 2.43
852 858 7.989826 AGAAATGAGAAAAACATTATCCCTCG 58.010 34.615 0.00 0.00 37.04 4.63
854 860 5.429681 TGAGAAAAACATTATCCCTCGGA 57.570 39.130 0.00 0.00 35.55 4.55
855 861 5.428253 TGAGAAAAACATTATCCCTCGGAG 58.572 41.667 0.00 0.00 34.05 4.63
856 862 4.781934 AGAAAAACATTATCCCTCGGAGG 58.218 43.478 17.41 17.41 34.05 4.30
857 863 4.473559 AGAAAAACATTATCCCTCGGAGGA 59.526 41.667 25.60 11.70 37.67 3.71
1011 1058 6.831664 ATCAATAGGAGTATGGTTCAACCT 57.168 37.500 8.40 0.00 39.58 3.50
1847 1911 1.224592 CTTGGTTCCCATCCCCTCG 59.775 63.158 0.00 0.00 31.53 4.63
2073 2137 6.704289 ATAAGCAGCAACATGTTCATATGT 57.296 33.333 8.48 0.00 42.82 2.29
2181 2245 1.810151 GTTCCATTAGACGCAGGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
2283 2347 2.367202 GGTGGAGGCATCGGAGGAA 61.367 63.158 0.00 0.00 0.00 3.36
2293 2357 1.414061 ATCGGAGGAAGCCATCAGGG 61.414 60.000 0.00 0.00 40.85 4.45
2378 2469 1.081092 TGGAGGAGGACCAAGGGAG 59.919 63.158 0.00 0.00 38.94 4.30
2507 3790 3.490439 ACACATGGATCACTGAACACA 57.510 42.857 0.00 0.00 0.00 3.72
2515 3798 4.099113 TGGATCACTGAACACATTGCAAAA 59.901 37.500 1.71 0.00 0.00 2.44
2585 3868 7.882791 TCTGAACTCCAAACTTGCATATTTAGA 59.117 33.333 0.00 0.00 0.00 2.10
2593 3876 8.127327 CCAAACTTGCATATTTAGATCACTGAG 58.873 37.037 0.00 0.00 0.00 3.35
2620 3903 3.054213 GTGGGTCAGTCTAGGAGTCTAGT 60.054 52.174 0.00 0.00 42.66 2.57
2623 3906 4.324408 GGGTCAGTCTAGGAGTCTAGTTCA 60.324 50.000 0.00 0.00 42.66 3.18
2630 3913 5.818857 GTCTAGGAGTCTAGTTCAGTACCAG 59.181 48.000 0.00 0.00 42.66 4.00
2805 4088 2.759355 CCTAGTCCACCCAATCCTACA 58.241 52.381 0.00 0.00 0.00 2.74
2810 4093 1.553248 TCCACCCAATCCTACACTTCG 59.447 52.381 0.00 0.00 0.00 3.79
2866 4149 4.019174 ACCAAAACCATGATGCTCCTAAG 58.981 43.478 0.00 0.00 0.00 2.18
2868 4151 4.706476 CCAAAACCATGATGCTCCTAAGAA 59.294 41.667 0.00 0.00 0.00 2.52
2922 4205 8.857216 CACTAGAAATTGAATGAGCATTTCAAC 58.143 33.333 9.88 1.04 39.77 3.18
3046 4329 6.051717 ACTATGACCATCTGAGCATAAACAC 58.948 40.000 0.00 0.00 0.00 3.32
3047 4330 4.558226 TGACCATCTGAGCATAAACACT 57.442 40.909 0.00 0.00 0.00 3.55
3048 4331 4.910195 TGACCATCTGAGCATAAACACTT 58.090 39.130 0.00 0.00 0.00 3.16
3049 4332 4.696877 TGACCATCTGAGCATAAACACTTG 59.303 41.667 0.00 0.00 0.00 3.16
3050 4333 4.655963 ACCATCTGAGCATAAACACTTGT 58.344 39.130 0.00 0.00 0.00 3.16
3051 4334 4.697352 ACCATCTGAGCATAAACACTTGTC 59.303 41.667 0.00 0.00 0.00 3.18
3052 4335 4.696877 CCATCTGAGCATAAACACTTGTCA 59.303 41.667 0.00 0.00 0.00 3.58
3053 4336 5.181811 CCATCTGAGCATAAACACTTGTCAA 59.818 40.000 0.00 0.00 0.00 3.18
3054 4337 6.127814 CCATCTGAGCATAAACACTTGTCAAT 60.128 38.462 0.00 0.00 0.00 2.57
3055 4338 7.066163 CCATCTGAGCATAAACACTTGTCAATA 59.934 37.037 0.00 0.00 0.00 1.90
3056 4339 7.364522 TCTGAGCATAAACACTTGTCAATAC 57.635 36.000 0.00 0.00 0.00 1.89
3057 4340 6.371548 TCTGAGCATAAACACTTGTCAATACC 59.628 38.462 0.00 0.00 0.00 2.73
3058 4341 6.000840 TGAGCATAAACACTTGTCAATACCA 58.999 36.000 0.00 0.00 0.00 3.25
3059 4342 6.072728 TGAGCATAAACACTTGTCAATACCAC 60.073 38.462 0.00 0.00 0.00 4.16
3060 4343 6.003950 AGCATAAACACTTGTCAATACCACT 58.996 36.000 0.00 0.00 0.00 4.00
3061 4344 6.072508 AGCATAAACACTTGTCAATACCACTG 60.073 38.462 0.00 0.00 0.00 3.66
3062 4345 6.072728 GCATAAACACTTGTCAATACCACTGA 60.073 38.462 0.00 0.00 0.00 3.41
3063 4346 5.751243 AAACACTTGTCAATACCACTGAC 57.249 39.130 0.00 0.00 42.94 3.51
3072 4355 7.389803 TGTCAATACCACTGACATTTAATGG 57.610 36.000 9.88 0.00 46.30 3.16
3073 4356 6.945435 TGTCAATACCACTGACATTTAATGGT 59.055 34.615 9.88 0.55 46.30 3.55
3074 4357 7.450014 TGTCAATACCACTGACATTTAATGGTT 59.550 33.333 9.88 0.00 46.30 3.67
3075 4358 8.303876 GTCAATACCACTGACATTTAATGGTTT 58.696 33.333 9.88 0.00 40.86 3.27
3076 4359 9.521841 TCAATACCACTGACATTTAATGGTTTA 57.478 29.630 9.88 0.00 40.86 2.01
3081 4364 9.487790 ACCACTGACATTTAATGGTTTAATTTG 57.512 29.630 9.88 0.00 40.86 2.32
3082 4365 9.703892 CCACTGACATTTAATGGTTTAATTTGA 57.296 29.630 9.88 0.00 33.60 2.69
3095 4378 8.729805 TGGTTTAATTTGATAAATGCCATTCC 57.270 30.769 0.00 0.00 0.00 3.01
3096 4379 8.324306 TGGTTTAATTTGATAAATGCCATTCCA 58.676 29.630 0.00 0.00 0.00 3.53
3097 4380 9.171877 GGTTTAATTTGATAAATGCCATTCCAA 57.828 29.630 0.00 0.00 0.00 3.53
3098 4381 9.986833 GTTTAATTTGATAAATGCCATTCCAAC 57.013 29.630 0.00 0.00 0.00 3.77
3099 4382 9.956640 TTTAATTTGATAAATGCCATTCCAACT 57.043 25.926 0.00 0.00 0.00 3.16
3100 4383 9.956640 TTAATTTGATAAATGCCATTCCAACTT 57.043 25.926 0.00 0.43 0.00 2.66
3101 4384 8.496707 AATTTGATAAATGCCATTCCAACTTC 57.503 30.769 0.00 0.00 0.00 3.01
3102 4385 6.855763 TTGATAAATGCCATTCCAACTTCT 57.144 33.333 0.00 0.00 0.00 2.85
3103 4386 6.211587 TGATAAATGCCATTCCAACTTCTG 57.788 37.500 0.00 0.00 0.00 3.02
3104 4387 3.323751 AAATGCCATTCCAACTTCTGC 57.676 42.857 0.00 0.00 0.00 4.26
3105 4388 1.927487 ATGCCATTCCAACTTCTGCA 58.073 45.000 0.00 0.00 0.00 4.41
3106 4389 1.927487 TGCCATTCCAACTTCTGCAT 58.073 45.000 0.00 0.00 0.00 3.96
3107 4390 1.546923 TGCCATTCCAACTTCTGCATG 59.453 47.619 0.00 0.00 0.00 4.06
3108 4391 1.738030 GCCATTCCAACTTCTGCATGC 60.738 52.381 11.82 11.82 0.00 4.06
3109 4392 1.822990 CCATTCCAACTTCTGCATGCT 59.177 47.619 20.33 0.00 0.00 3.79
3110 4393 2.232941 CCATTCCAACTTCTGCATGCTT 59.767 45.455 20.33 0.58 0.00 3.91
3111 4394 3.508762 CATTCCAACTTCTGCATGCTTC 58.491 45.455 20.33 0.00 0.00 3.86
3112 4395 2.275134 TCCAACTTCTGCATGCTTCA 57.725 45.000 20.33 0.00 0.00 3.02
3113 4396 2.585330 TCCAACTTCTGCATGCTTCAA 58.415 42.857 20.33 7.74 0.00 2.69
3114 4397 2.957680 TCCAACTTCTGCATGCTTCAAA 59.042 40.909 20.33 6.83 0.00 2.69
3115 4398 3.005050 TCCAACTTCTGCATGCTTCAAAG 59.995 43.478 20.33 17.33 0.00 2.77
3116 4399 3.005050 CCAACTTCTGCATGCTTCAAAGA 59.995 43.478 20.33 9.99 0.00 2.52
3117 4400 4.500205 CCAACTTCTGCATGCTTCAAAGAA 60.500 41.667 20.33 16.91 0.00 2.52
3118 4401 5.227908 CAACTTCTGCATGCTTCAAAGAAT 58.772 37.500 20.33 2.37 0.00 2.40
3119 4402 4.806330 ACTTCTGCATGCTTCAAAGAATG 58.194 39.130 20.33 13.66 43.68 2.67
3124 4407 3.587797 CATGCTTCAAAGAATGCCACT 57.412 42.857 0.00 0.00 35.38 4.00
3125 4408 4.707030 CATGCTTCAAAGAATGCCACTA 57.293 40.909 0.00 0.00 35.38 2.74
3126 4409 5.258456 CATGCTTCAAAGAATGCCACTAT 57.742 39.130 0.00 0.00 35.38 2.12
3127 4410 4.707030 TGCTTCAAAGAATGCCACTATG 57.293 40.909 0.00 0.00 0.00 2.23
3128 4411 4.334552 TGCTTCAAAGAATGCCACTATGA 58.665 39.130 0.00 0.00 0.00 2.15
3129 4412 4.397103 TGCTTCAAAGAATGCCACTATGAG 59.603 41.667 0.00 0.00 0.00 2.90
3130 4413 4.732938 GCTTCAAAGAATGCCACTATGAGC 60.733 45.833 0.00 0.00 0.00 4.26
3131 4414 3.954200 TCAAAGAATGCCACTATGAGCA 58.046 40.909 0.00 0.00 44.45 4.26
3177 4460 0.810031 ACTGTCATATTCGTGCCCGC 60.810 55.000 0.00 0.00 0.00 6.13
3186 4469 0.600557 TTCGTGCCCGCATTTTCATT 59.399 45.000 0.00 0.00 0.00 2.57
3187 4470 1.454201 TCGTGCCCGCATTTTCATTA 58.546 45.000 0.00 0.00 0.00 1.90
3188 4471 1.400142 TCGTGCCCGCATTTTCATTAG 59.600 47.619 0.00 0.00 0.00 1.73
3189 4472 1.400142 CGTGCCCGCATTTTCATTAGA 59.600 47.619 0.00 0.00 0.00 2.10
3190 4473 2.033299 CGTGCCCGCATTTTCATTAGAT 59.967 45.455 0.00 0.00 0.00 1.98
3191 4474 3.489059 CGTGCCCGCATTTTCATTAGATT 60.489 43.478 0.00 0.00 0.00 2.40
3192 4475 4.044426 GTGCCCGCATTTTCATTAGATTC 58.956 43.478 0.00 0.00 0.00 2.52
3193 4476 3.068024 TGCCCGCATTTTCATTAGATTCC 59.932 43.478 0.00 0.00 0.00 3.01
3194 4477 3.068024 GCCCGCATTTTCATTAGATTCCA 59.932 43.478 0.00 0.00 0.00 3.53
3195 4478 4.794003 GCCCGCATTTTCATTAGATTCCAG 60.794 45.833 0.00 0.00 0.00 3.86
3196 4479 4.261741 CCCGCATTTTCATTAGATTCCAGG 60.262 45.833 0.00 0.00 0.00 4.45
3197 4480 4.580167 CCGCATTTTCATTAGATTCCAGGA 59.420 41.667 0.00 0.00 0.00 3.86
3198 4481 5.067674 CCGCATTTTCATTAGATTCCAGGAA 59.932 40.000 3.72 3.72 0.00 3.36
3199 4482 6.239120 CCGCATTTTCATTAGATTCCAGGAAT 60.239 38.462 15.15 15.15 34.71 3.01
3200 4483 6.639686 CGCATTTTCATTAGATTCCAGGAATG 59.360 38.462 20.21 6.40 31.89 2.67
3201 4484 7.469043 CGCATTTTCATTAGATTCCAGGAATGA 60.469 37.037 20.21 8.84 36.71 2.57
3202 4485 8.199449 GCATTTTCATTAGATTCCAGGAATGAA 58.801 33.333 20.21 14.37 43.20 2.57
3206 4489 9.705103 TTTCATTAGATTCCAGGAATGAATTCT 57.295 29.630 20.21 12.87 43.89 2.40
3207 4490 9.705103 TTCATTAGATTCCAGGAATGAATTCTT 57.295 29.630 20.21 0.00 41.19 2.52
3208 4491 9.705103 TCATTAGATTCCAGGAATGAATTCTTT 57.295 29.630 20.21 6.65 35.82 2.52
3211 4494 7.179076 AGATTCCAGGAATGAATTCTTTTGG 57.821 36.000 20.21 14.45 37.00 3.28
3212 4495 6.955851 AGATTCCAGGAATGAATTCTTTTGGA 59.044 34.615 20.21 17.41 38.58 3.53
3213 4496 6.992664 TTCCAGGAATGAATTCTTTTGGAA 57.007 33.333 23.50 23.50 42.33 3.53
3214 4497 6.992664 TCCAGGAATGAATTCTTTTGGAAA 57.007 33.333 18.39 4.54 38.04 3.13
3215 4498 7.557875 TCCAGGAATGAATTCTTTTGGAAAT 57.442 32.000 18.39 0.00 38.04 2.17
3216 4499 7.388437 TCCAGGAATGAATTCTTTTGGAAATG 58.612 34.615 18.39 8.44 38.04 2.32
3217 4500 6.596497 CCAGGAATGAATTCTTTTGGAAATGG 59.404 38.462 15.11 10.20 37.49 3.16
3218 4501 6.093082 CAGGAATGAATTCTTTTGGAAATGGC 59.907 38.462 7.05 0.00 37.49 4.40
3219 4502 6.013119 AGGAATGAATTCTTTTGGAAATGGCT 60.013 34.615 7.05 0.00 37.49 4.75
3220 4503 6.093082 GGAATGAATTCTTTTGGAAATGGCTG 59.907 38.462 7.05 0.00 37.49 4.85
3221 4504 4.317488 TGAATTCTTTTGGAAATGGCTGC 58.683 39.130 7.05 0.00 37.49 5.25
3222 4505 2.837532 TTCTTTTGGAAATGGCTGCC 57.162 45.000 12.87 12.87 0.00 4.85
3223 4506 2.014010 TCTTTTGGAAATGGCTGCCT 57.986 45.000 21.03 0.00 0.00 4.75
3224 4507 1.619827 TCTTTTGGAAATGGCTGCCTG 59.380 47.619 21.03 0.00 0.00 4.85
3225 4508 0.035176 TTTTGGAAATGGCTGCCTGC 59.965 50.000 21.03 5.55 41.94 4.85
3226 4509 1.120184 TTTGGAAATGGCTGCCTGCA 61.120 50.000 21.03 8.44 45.15 4.41
3227 4510 1.537814 TTGGAAATGGCTGCCTGCAG 61.538 55.000 21.03 14.70 45.15 4.41
3228 4511 1.980772 GGAAATGGCTGCCTGCAGT 60.981 57.895 21.03 0.00 45.24 4.40
3229 4512 1.538687 GGAAATGGCTGCCTGCAGTT 61.539 55.000 21.03 4.96 45.24 3.16
3230 4513 0.389426 GAAATGGCTGCCTGCAGTTG 60.389 55.000 21.03 3.22 45.24 3.16
3231 4514 0.828762 AAATGGCTGCCTGCAGTTGA 60.829 50.000 21.03 5.36 45.24 3.18
3232 4515 0.613853 AATGGCTGCCTGCAGTTGAT 60.614 50.000 21.03 7.29 45.24 2.57
3233 4516 0.256752 ATGGCTGCCTGCAGTTGATA 59.743 50.000 21.03 0.00 45.24 2.15
3234 4517 0.677731 TGGCTGCCTGCAGTTGATAC 60.678 55.000 21.03 2.72 45.24 2.24
3235 4518 0.677731 GGCTGCCTGCAGTTGATACA 60.678 55.000 19.45 0.10 45.24 2.29
3236 4519 0.731417 GCTGCCTGCAGTTGATACAG 59.269 55.000 19.45 10.65 45.24 2.74
3237 4520 0.731417 CTGCCTGCAGTTGATACAGC 59.269 55.000 13.81 6.67 39.10 4.40
3238 4521 0.325933 TGCCTGCAGTTGATACAGCT 59.674 50.000 13.81 0.00 37.64 4.24
3239 4522 0.731417 GCCTGCAGTTGATACAGCTG 59.269 55.000 13.48 13.48 43.76 4.24
3240 4523 1.376543 CCTGCAGTTGATACAGCTGG 58.623 55.000 19.93 0.00 44.89 4.85
3241 4524 2.391616 CTGCAGTTGATACAGCTGGA 57.608 50.000 19.93 10.84 41.77 3.86
3242 4525 2.391616 TGCAGTTGATACAGCTGGAG 57.608 50.000 19.93 0.00 41.77 3.86
3243 4526 1.065926 TGCAGTTGATACAGCTGGAGG 60.066 52.381 19.93 0.00 41.77 4.30
3244 4527 1.661341 CAGTTGATACAGCTGGAGGC 58.339 55.000 19.93 6.66 38.67 4.70
3245 4528 1.065926 CAGTTGATACAGCTGGAGGCA 60.066 52.381 19.93 9.53 44.79 4.75
3246 4529 1.842562 AGTTGATACAGCTGGAGGCAT 59.157 47.619 19.93 2.72 44.79 4.40
3247 4530 2.158842 AGTTGATACAGCTGGAGGCATC 60.159 50.000 19.93 11.07 44.79 3.91
3248 4531 0.761187 TGATACAGCTGGAGGCATCC 59.239 55.000 19.93 11.34 46.87 3.51
3249 4532 1.055040 GATACAGCTGGAGGCATCCT 58.945 55.000 19.75 0.00 46.80 3.24
3250 4533 2.251818 GATACAGCTGGAGGCATCCTA 58.748 52.381 19.75 2.06 46.80 2.94
3251 4534 2.174685 TACAGCTGGAGGCATCCTAA 57.825 50.000 19.75 0.00 46.80 2.69
3252 4535 1.516110 ACAGCTGGAGGCATCCTAAT 58.484 50.000 19.75 0.67 46.80 1.73
3253 4536 2.694397 ACAGCTGGAGGCATCCTAATA 58.306 47.619 19.75 0.00 46.80 0.98
3254 4537 2.636893 ACAGCTGGAGGCATCCTAATAG 59.363 50.000 19.75 8.56 46.80 1.73
3255 4538 2.027377 CAGCTGGAGGCATCCTAATAGG 60.027 54.545 19.75 0.00 46.80 2.57
3256 4539 1.981495 GCTGGAGGCATCCTAATAGGT 59.019 52.381 19.75 0.00 46.80 3.08
3257 4540 2.027653 GCTGGAGGCATCCTAATAGGTC 60.028 54.545 19.75 0.00 46.80 3.85
3258 4541 3.515562 CTGGAGGCATCCTAATAGGTCT 58.484 50.000 19.75 0.71 46.80 3.85
3259 4542 3.906846 CTGGAGGCATCCTAATAGGTCTT 59.093 47.826 19.75 0.00 46.80 3.01
3260 4543 5.087323 CTGGAGGCATCCTAATAGGTCTTA 58.913 45.833 19.75 0.00 46.80 2.10
3261 4544 5.473273 TGGAGGCATCCTAATAGGTCTTAA 58.527 41.667 19.75 0.00 46.80 1.85
3262 4545 5.544176 TGGAGGCATCCTAATAGGTCTTAAG 59.456 44.000 19.75 0.00 46.80 1.85
3263 4546 5.046231 GGAGGCATCCTAATAGGTCTTAAGG 60.046 48.000 10.91 0.00 42.94 2.69
3264 4547 5.727630 AGGCATCCTAATAGGTCTTAAGGA 58.272 41.667 6.17 0.00 36.53 3.36
3265 4548 6.335115 AGGCATCCTAATAGGTCTTAAGGAT 58.665 40.000 6.17 0.00 36.53 3.24
3278 4561 8.324191 AGGTCTTAAGGATGATACATTTGAGA 57.676 34.615 1.85 0.00 0.00 3.27
3279 4562 8.943085 AGGTCTTAAGGATGATACATTTGAGAT 58.057 33.333 1.85 0.00 0.00 2.75
3280 4563 9.213799 GGTCTTAAGGATGATACATTTGAGATC 57.786 37.037 1.85 0.00 0.00 2.75
3281 4564 9.213799 GTCTTAAGGATGATACATTTGAGATCC 57.786 37.037 1.85 0.00 0.00 3.36
3282 4565 9.163894 TCTTAAGGATGATACATTTGAGATCCT 57.836 33.333 1.85 0.00 41.20 3.24
3286 4569 8.914213 AGGATGATACATTTGAGATCCTATCT 57.086 34.615 0.00 0.00 43.70 1.98
3287 4570 9.336462 AGGATGATACATTTGAGATCCTATCTT 57.664 33.333 0.00 0.00 40.38 2.40
3288 4571 9.381033 GGATGATACATTTGAGATCCTATCTTG 57.619 37.037 0.00 0.00 40.38 3.02
3289 4572 9.941325 GATGATACATTTGAGATCCTATCTTGT 57.059 33.333 0.00 0.00 40.38 3.16
3290 4573 9.722184 ATGATACATTTGAGATCCTATCTTGTG 57.278 33.333 0.00 0.00 40.38 3.33
3291 4574 8.927411 TGATACATTTGAGATCCTATCTTGTGA 58.073 33.333 0.00 0.00 40.38 3.58
3292 4575 9.202273 GATACATTTGAGATCCTATCTTGTGAC 57.798 37.037 0.00 0.00 40.38 3.67
3293 4576 6.950842 ACATTTGAGATCCTATCTTGTGACA 58.049 36.000 0.00 0.00 40.38 3.58
3294 4577 7.571919 ACATTTGAGATCCTATCTTGTGACAT 58.428 34.615 0.00 0.00 40.38 3.06
3295 4578 7.714377 ACATTTGAGATCCTATCTTGTGACATC 59.286 37.037 0.00 0.00 40.38 3.06
3296 4579 5.798125 TGAGATCCTATCTTGTGACATCC 57.202 43.478 0.00 0.00 40.38 3.51
3297 4580 5.211201 TGAGATCCTATCTTGTGACATCCA 58.789 41.667 0.00 0.00 40.38 3.41
3298 4581 5.842874 TGAGATCCTATCTTGTGACATCCAT 59.157 40.000 0.00 0.00 40.38 3.41
3299 4582 7.012607 TGAGATCCTATCTTGTGACATCCATA 58.987 38.462 0.00 0.00 40.38 2.74
3300 4583 7.178097 TGAGATCCTATCTTGTGACATCCATAG 59.822 40.741 0.00 0.00 40.38 2.23
3301 4584 7.015680 AGATCCTATCTTGTGACATCCATAGT 58.984 38.462 0.00 0.00 35.76 2.12
3302 4585 7.512058 AGATCCTATCTTGTGACATCCATAGTT 59.488 37.037 0.00 0.00 35.76 2.24
3303 4586 7.437713 TCCTATCTTGTGACATCCATAGTTT 57.562 36.000 0.00 0.00 0.00 2.66
3304 4587 7.861629 TCCTATCTTGTGACATCCATAGTTTT 58.138 34.615 0.00 0.00 0.00 2.43
3305 4588 8.328758 TCCTATCTTGTGACATCCATAGTTTTT 58.671 33.333 0.00 0.00 0.00 1.94
3306 4589 8.400947 CCTATCTTGTGACATCCATAGTTTTTG 58.599 37.037 0.00 0.00 0.00 2.44
3307 4590 7.765695 ATCTTGTGACATCCATAGTTTTTGT 57.234 32.000 0.00 0.00 0.00 2.83
3308 4591 6.969366 TCTTGTGACATCCATAGTTTTTGTG 58.031 36.000 0.00 0.00 0.00 3.33
3309 4592 6.545666 TCTTGTGACATCCATAGTTTTTGTGT 59.454 34.615 0.00 0.00 0.00 3.72
3310 4593 6.707440 TGTGACATCCATAGTTTTTGTGTT 57.293 33.333 0.00 0.00 0.00 3.32
3311 4594 7.106439 TGTGACATCCATAGTTTTTGTGTTT 57.894 32.000 0.00 0.00 0.00 2.83
3312 4595 7.199766 TGTGACATCCATAGTTTTTGTGTTTC 58.800 34.615 0.00 0.00 0.00 2.78
3313 4596 6.640907 GTGACATCCATAGTTTTTGTGTTTCC 59.359 38.462 0.00 0.00 0.00 3.13
3314 4597 6.549364 TGACATCCATAGTTTTTGTGTTTCCT 59.451 34.615 0.00 0.00 0.00 3.36
3315 4598 6.748132 ACATCCATAGTTTTTGTGTTTCCTG 58.252 36.000 0.00 0.00 0.00 3.86
3316 4599 6.323739 ACATCCATAGTTTTTGTGTTTCCTGT 59.676 34.615 0.00 0.00 0.00 4.00
3317 4600 6.385649 TCCATAGTTTTTGTGTTTCCTGTC 57.614 37.500 0.00 0.00 0.00 3.51
3318 4601 6.126409 TCCATAGTTTTTGTGTTTCCTGTCT 58.874 36.000 0.00 0.00 0.00 3.41
3319 4602 6.605594 TCCATAGTTTTTGTGTTTCCTGTCTT 59.394 34.615 0.00 0.00 0.00 3.01
3320 4603 6.918022 CCATAGTTTTTGTGTTTCCTGTCTTC 59.082 38.462 0.00 0.00 0.00 2.87
3321 4604 7.201821 CCATAGTTTTTGTGTTTCCTGTCTTCT 60.202 37.037 0.00 0.00 0.00 2.85
3322 4605 6.196079 AGTTTTTGTGTTTCCTGTCTTCTC 57.804 37.500 0.00 0.00 0.00 2.87
3323 4606 5.710099 AGTTTTTGTGTTTCCTGTCTTCTCA 59.290 36.000 0.00 0.00 0.00 3.27
3324 4607 5.818136 TTTTGTGTTTCCTGTCTTCTCAG 57.182 39.130 0.00 0.00 35.45 3.35
3325 4608 4.753516 TTGTGTTTCCTGTCTTCTCAGA 57.246 40.909 0.00 0.00 37.61 3.27
3326 4609 4.963318 TGTGTTTCCTGTCTTCTCAGAT 57.037 40.909 0.00 0.00 37.61 2.90
3327 4610 4.635223 TGTGTTTCCTGTCTTCTCAGATG 58.365 43.478 0.00 0.00 37.61 2.90
3328 4611 3.434984 GTGTTTCCTGTCTTCTCAGATGC 59.565 47.826 0.00 0.00 37.61 3.91
3329 4612 3.071457 TGTTTCCTGTCTTCTCAGATGCA 59.929 43.478 0.00 0.00 37.61 3.96
3330 4613 3.606595 TTCCTGTCTTCTCAGATGCAG 57.393 47.619 0.00 5.52 37.61 4.41
3331 4614 2.812658 TCCTGTCTTCTCAGATGCAGA 58.187 47.619 11.27 0.00 37.61 4.26
3332 4615 3.168292 TCCTGTCTTCTCAGATGCAGAA 58.832 45.455 11.27 0.00 37.61 3.02
3333 4616 3.580022 TCCTGTCTTCTCAGATGCAGAAA 59.420 43.478 11.27 0.00 37.61 2.52
3334 4617 4.224594 TCCTGTCTTCTCAGATGCAGAAAT 59.775 41.667 11.27 0.00 37.61 2.17
3335 4618 5.423290 TCCTGTCTTCTCAGATGCAGAAATA 59.577 40.000 11.27 0.00 37.61 1.40
3336 4619 6.070596 TCCTGTCTTCTCAGATGCAGAAATAA 60.071 38.462 11.27 0.00 37.61 1.40
3337 4620 6.036953 CCTGTCTTCTCAGATGCAGAAATAAC 59.963 42.308 11.27 0.00 37.61 1.89
3338 4621 5.877012 TGTCTTCTCAGATGCAGAAATAACC 59.123 40.000 0.00 0.00 29.36 2.85
3339 4622 5.877012 GTCTTCTCAGATGCAGAAATAACCA 59.123 40.000 0.00 0.00 29.36 3.67
3340 4623 6.541641 GTCTTCTCAGATGCAGAAATAACCAT 59.458 38.462 0.00 0.00 29.36 3.55
3341 4624 7.712639 GTCTTCTCAGATGCAGAAATAACCATA 59.287 37.037 0.00 0.00 29.36 2.74
3342 4625 8.267183 TCTTCTCAGATGCAGAAATAACCATAA 58.733 33.333 0.00 0.00 29.36 1.90
3343 4626 8.806429 TTCTCAGATGCAGAAATAACCATAAA 57.194 30.769 0.00 0.00 0.00 1.40
3344 4627 8.442632 TCTCAGATGCAGAAATAACCATAAAG 57.557 34.615 0.00 0.00 0.00 1.85
3345 4628 8.267183 TCTCAGATGCAGAAATAACCATAAAGA 58.733 33.333 0.00 0.00 0.00 2.52
3346 4629 8.806429 TCAGATGCAGAAATAACCATAAAGAA 57.194 30.769 0.00 0.00 0.00 2.52
3347 4630 9.412460 TCAGATGCAGAAATAACCATAAAGAAT 57.588 29.630 0.00 0.00 0.00 2.40
3348 4631 9.459640 CAGATGCAGAAATAACCATAAAGAATG 57.540 33.333 0.00 0.00 35.15 2.67
3373 4656 9.213777 TGGAGACTTATCTATGTTTATGGTTCT 57.786 33.333 0.00 0.00 34.34 3.01
3374 4657 9.482627 GGAGACTTATCTATGTTTATGGTTCTG 57.517 37.037 0.00 0.00 34.34 3.02
3375 4658 8.894768 AGACTTATCTATGTTTATGGTTCTGC 57.105 34.615 0.00 0.00 31.46 4.26
3376 4659 8.486210 AGACTTATCTATGTTTATGGTTCTGCA 58.514 33.333 0.00 0.00 31.46 4.41
3377 4660 9.277783 GACTTATCTATGTTTATGGTTCTGCAT 57.722 33.333 0.00 0.00 0.00 3.96
3382 4665 9.970553 ATCTATGTTTATGGTTCTGCATATGAT 57.029 29.630 6.97 0.00 0.00 2.45
3383 4666 9.223099 TCTATGTTTATGGTTCTGCATATGATG 57.777 33.333 6.97 0.00 0.00 3.07
3384 4667 9.223099 CTATGTTTATGGTTCTGCATATGATGA 57.777 33.333 6.97 0.19 0.00 2.92
3385 4668 7.500720 TGTTTATGGTTCTGCATATGATGAG 57.499 36.000 6.97 0.00 0.00 2.90
3386 4669 6.487668 TGTTTATGGTTCTGCATATGATGAGG 59.512 38.462 6.97 0.00 0.00 3.86
3387 4670 3.497103 TGGTTCTGCATATGATGAGGG 57.503 47.619 6.97 0.00 0.00 4.30
3388 4671 2.157738 GGTTCTGCATATGATGAGGGC 58.842 52.381 6.97 0.00 0.00 5.19
3389 4672 2.487805 GGTTCTGCATATGATGAGGGCA 60.488 50.000 6.97 0.00 0.00 5.36
3390 4673 3.216800 GTTCTGCATATGATGAGGGCAA 58.783 45.455 6.97 0.00 33.58 4.52
3391 4674 3.136009 TCTGCATATGATGAGGGCAAG 57.864 47.619 6.97 0.00 33.58 4.01
3392 4675 1.540267 CTGCATATGATGAGGGCAAGC 59.460 52.381 6.97 0.00 33.58 4.01
3393 4676 1.144298 TGCATATGATGAGGGCAAGCT 59.856 47.619 6.97 0.00 0.00 3.74
3394 4677 2.236766 GCATATGATGAGGGCAAGCTT 58.763 47.619 6.97 0.00 0.00 3.74
3395 4678 2.030185 GCATATGATGAGGGCAAGCTTG 60.030 50.000 22.44 22.44 0.00 4.01
3396 4679 3.483421 CATATGATGAGGGCAAGCTTGA 58.517 45.455 30.39 9.05 0.00 3.02
3397 4680 1.760192 ATGATGAGGGCAAGCTTGAC 58.240 50.000 30.39 27.74 34.70 3.18
3398 4681 0.694771 TGATGAGGGCAAGCTTGACT 59.305 50.000 30.68 24.80 36.14 3.41
3399 4682 1.074405 TGATGAGGGCAAGCTTGACTT 59.926 47.619 30.68 25.07 40.05 3.01
3400 4683 2.165998 GATGAGGGCAAGCTTGACTTT 58.834 47.619 30.68 19.61 36.04 2.66
3401 4684 2.949177 TGAGGGCAAGCTTGACTTTA 57.051 45.000 30.68 18.63 36.04 1.85
3402 4685 3.439857 TGAGGGCAAGCTTGACTTTAT 57.560 42.857 30.68 15.01 36.04 1.40
3403 4686 3.766545 TGAGGGCAAGCTTGACTTTATT 58.233 40.909 30.68 12.17 36.04 1.40
3404 4687 4.917385 TGAGGGCAAGCTTGACTTTATTA 58.083 39.130 30.68 9.55 36.04 0.98
3405 4688 5.321102 TGAGGGCAAGCTTGACTTTATTAA 58.679 37.500 30.68 8.09 36.04 1.40
3406 4689 5.951747 TGAGGGCAAGCTTGACTTTATTAAT 59.048 36.000 30.68 7.74 36.04 1.40
3407 4690 6.127647 TGAGGGCAAGCTTGACTTTATTAATG 60.128 38.462 30.68 0.09 36.04 1.90
3408 4691 5.951747 AGGGCAAGCTTGACTTTATTAATGA 59.048 36.000 30.68 0.00 36.04 2.57
3409 4692 6.437162 AGGGCAAGCTTGACTTTATTAATGAA 59.563 34.615 30.68 0.00 36.04 2.57
3410 4693 7.124750 AGGGCAAGCTTGACTTTATTAATGAAT 59.875 33.333 30.68 0.00 36.04 2.57
3411 4694 7.765819 GGGCAAGCTTGACTTTATTAATGAATT 59.234 33.333 30.68 0.00 36.04 2.17
3412 4695 9.801873 GGCAAGCTTGACTTTATTAATGAATTA 57.198 29.630 30.39 0.00 36.04 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.629157 TGAACCAGGATTGTACAATTATCAGA 58.371 34.615 21.63 1.15 0.00 3.27
102 105 2.504585 TGAGCTTCAGGAATCATGCTCT 59.495 45.455 16.79 0.00 44.80 4.09
103 106 2.613133 GTGAGCTTCAGGAATCATGCTC 59.387 50.000 11.78 11.78 44.77 4.26
104 107 2.641305 GTGAGCTTCAGGAATCATGCT 58.359 47.619 0.00 0.00 0.00 3.79
105 108 1.329906 CGTGAGCTTCAGGAATCATGC 59.670 52.381 0.00 0.00 34.44 4.06
106 109 2.625737 ACGTGAGCTTCAGGAATCATG 58.374 47.619 11.20 0.00 35.94 3.07
107 110 3.055530 AGAACGTGAGCTTCAGGAATCAT 60.056 43.478 11.20 0.00 35.94 2.45
166 169 2.373169 AGTGAAACAGAGGAGGATGCAA 59.627 45.455 0.00 0.00 41.43 4.08
236 239 6.316390 CAGTAGCTGTACCCTTTAATTCCTTG 59.684 42.308 0.00 0.00 0.00 3.61
237 240 6.415573 CAGTAGCTGTACCCTTTAATTCCTT 58.584 40.000 0.00 0.00 0.00 3.36
243 246 4.627284 TTGCAGTAGCTGTACCCTTTAA 57.373 40.909 0.00 0.00 42.74 1.52
252 255 3.070018 GTGAGAACATTGCAGTAGCTGT 58.930 45.455 0.00 0.00 42.74 4.40
347 353 8.723942 AAGTGTTAACAACATAAAAATGGCAA 57.276 26.923 10.51 0.00 44.35 4.52
548 554 3.920231 TGCTGAGGAGAGCAACATAAT 57.080 42.857 0.00 0.00 46.05 1.28
830 836 6.423182 TCCGAGGGATAATGTTTTTCTCATT 58.577 36.000 0.00 0.00 38.72 2.57
841 847 2.560542 CTCAGTCCTCCGAGGGATAATG 59.439 54.545 14.76 5.26 37.73 1.90
852 858 6.551601 TCTTCTGGAAATATACTCAGTCCTCC 59.448 42.308 0.00 0.00 0.00 4.30
854 860 7.069331 CAGTCTTCTGGAAATATACTCAGTCCT 59.931 40.741 0.00 0.00 37.97 3.85
855 861 7.068839 TCAGTCTTCTGGAAATATACTCAGTCC 59.931 40.741 0.00 0.00 41.59 3.85
856 862 8.001881 TCAGTCTTCTGGAAATATACTCAGTC 57.998 38.462 0.00 0.00 41.59 3.51
857 863 7.836685 TCTCAGTCTTCTGGAAATATACTCAGT 59.163 37.037 0.00 0.00 41.59 3.41
1011 1058 6.581712 TCGACCATCATATTGAATTCTCACA 58.418 36.000 7.05 0.00 0.00 3.58
1847 1911 4.880696 CCATCTGAAATTTCTGGAGGAGAC 59.119 45.833 20.84 0.00 0.00 3.36
2073 2137 2.615493 GGTGAAGCGGAAATCCTTCAGA 60.615 50.000 3.55 0.00 45.63 3.27
2181 2245 3.383825 GCTGGATGCCAAAATCAAGATCT 59.616 43.478 0.00 0.00 30.12 2.75
2293 2357 1.404315 CGGAAGGAGAGTAACTGTGCC 60.404 57.143 0.00 0.00 0.00 5.01
2378 2469 0.758123 CTGGATCTCCTCTTCAGCCC 59.242 60.000 0.00 0.00 36.82 5.19
2507 3790 8.467963 TCAGTGATCCATATGTATTTTGCAAT 57.532 30.769 0.00 0.00 0.00 3.56
2515 3798 8.874156 AGTATGTGTTCAGTGATCCATATGTAT 58.126 33.333 1.24 0.00 0.00 2.29
2593 3876 2.691011 CTCCTAGACTGACCCACTAAGC 59.309 54.545 0.00 0.00 0.00 3.09
2620 3903 4.098914 AGGACAAAATGCTGGTACTGAA 57.901 40.909 0.00 0.00 0.00 3.02
2623 3906 5.179452 ACATAGGACAAAATGCTGGTACT 57.821 39.130 0.00 0.00 0.00 2.73
2630 3913 3.438781 TCGGTGAACATAGGACAAAATGC 59.561 43.478 0.00 0.00 0.00 3.56
2805 4088 9.778993 CATCATATGAAACAAGAAAATCGAAGT 57.221 29.630 9.99 0.00 0.00 3.01
3021 4304 7.069950 AGTGTTTATGCTCAGATGGTCATAGTA 59.930 37.037 0.00 0.00 0.00 1.82
3049 4332 7.391148 ACCATTAAATGTCAGTGGTATTGAC 57.609 36.000 0.00 0.00 41.15 3.18
3050 4333 8.415950 AAACCATTAAATGTCAGTGGTATTGA 57.584 30.769 0.00 0.00 42.05 2.57
3055 4338 9.487790 CAAATTAAACCATTAAATGTCAGTGGT 57.512 29.630 0.00 0.00 44.62 4.16
3056 4339 9.703892 TCAAATTAAACCATTAAATGTCAGTGG 57.296 29.630 0.00 0.00 34.80 4.00
3069 4352 9.341078 GGAATGGCATTTATCAAATTAAACCAT 57.659 29.630 14.93 0.00 33.04 3.55
3070 4353 8.324306 TGGAATGGCATTTATCAAATTAAACCA 58.676 29.630 14.93 9.04 0.00 3.67
3071 4354 8.729805 TGGAATGGCATTTATCAAATTAAACC 57.270 30.769 14.93 6.49 0.00 3.27
3072 4355 9.986833 GTTGGAATGGCATTTATCAAATTAAAC 57.013 29.630 14.93 4.46 0.00 2.01
3073 4356 9.956640 AGTTGGAATGGCATTTATCAAATTAAA 57.043 25.926 14.93 0.00 0.00 1.52
3074 4357 9.956640 AAGTTGGAATGGCATTTATCAAATTAA 57.043 25.926 22.82 6.28 0.00 1.40
3075 4358 9.598517 GAAGTTGGAATGGCATTTATCAAATTA 57.401 29.630 23.49 7.09 0.00 1.40
3076 4359 8.323567 AGAAGTTGGAATGGCATTTATCAAATT 58.676 29.630 23.58 23.58 0.00 1.82
3077 4360 7.767198 CAGAAGTTGGAATGGCATTTATCAAAT 59.233 33.333 14.93 14.57 0.00 2.32
3078 4361 7.098477 CAGAAGTTGGAATGGCATTTATCAAA 58.902 34.615 14.93 0.00 0.00 2.69
3079 4362 6.632909 CAGAAGTTGGAATGGCATTTATCAA 58.367 36.000 14.93 15.31 0.00 2.57
3080 4363 5.394443 GCAGAAGTTGGAATGGCATTTATCA 60.394 40.000 14.93 10.45 0.00 2.15
3081 4364 5.045872 GCAGAAGTTGGAATGGCATTTATC 58.954 41.667 14.93 8.02 0.00 1.75
3082 4365 4.467082 TGCAGAAGTTGGAATGGCATTTAT 59.533 37.500 14.93 0.00 0.00 1.40
3083 4366 3.831333 TGCAGAAGTTGGAATGGCATTTA 59.169 39.130 14.93 4.11 0.00 1.40
3084 4367 2.633967 TGCAGAAGTTGGAATGGCATTT 59.366 40.909 14.93 0.00 0.00 2.32
3085 4368 2.250031 TGCAGAAGTTGGAATGGCATT 58.750 42.857 13.54 13.54 0.00 3.56
3086 4369 1.927487 TGCAGAAGTTGGAATGGCAT 58.073 45.000 0.00 0.00 0.00 4.40
3087 4370 1.546923 CATGCAGAAGTTGGAATGGCA 59.453 47.619 0.00 0.00 0.00 4.92
3088 4371 1.738030 GCATGCAGAAGTTGGAATGGC 60.738 52.381 14.21 0.00 0.00 4.40
3089 4372 1.822990 AGCATGCAGAAGTTGGAATGG 59.177 47.619 21.98 0.00 0.00 3.16
3090 4373 3.057104 TGAAGCATGCAGAAGTTGGAATG 60.057 43.478 21.98 0.00 0.00 2.67
3091 4374 3.159472 TGAAGCATGCAGAAGTTGGAAT 58.841 40.909 21.98 0.00 0.00 3.01
3092 4375 2.585330 TGAAGCATGCAGAAGTTGGAA 58.415 42.857 21.98 0.00 0.00 3.53
3093 4376 2.275134 TGAAGCATGCAGAAGTTGGA 57.725 45.000 21.98 0.00 0.00 3.53
3094 4377 3.005050 TCTTTGAAGCATGCAGAAGTTGG 59.995 43.478 21.98 3.01 0.00 3.77
3095 4378 4.233123 TCTTTGAAGCATGCAGAAGTTG 57.767 40.909 21.98 4.38 0.00 3.16
3096 4379 4.924305 TTCTTTGAAGCATGCAGAAGTT 57.076 36.364 21.98 4.39 0.00 2.66
3097 4380 4.806330 CATTCTTTGAAGCATGCAGAAGT 58.194 39.130 21.98 7.05 0.00 3.01
3104 4387 3.587797 AGTGGCATTCTTTGAAGCATG 57.412 42.857 0.00 0.00 33.60 4.06
3105 4388 4.951715 TCATAGTGGCATTCTTTGAAGCAT 59.048 37.500 0.00 0.00 0.00 3.79
3106 4389 4.334552 TCATAGTGGCATTCTTTGAAGCA 58.665 39.130 0.00 0.00 0.00 3.91
3107 4390 4.732938 GCTCATAGTGGCATTCTTTGAAGC 60.733 45.833 0.00 0.00 0.00 3.86
3108 4391 4.397103 TGCTCATAGTGGCATTCTTTGAAG 59.603 41.667 0.00 0.00 33.23 3.02
3109 4392 4.334552 TGCTCATAGTGGCATTCTTTGAA 58.665 39.130 0.00 0.00 33.23 2.69
3110 4393 3.954200 TGCTCATAGTGGCATTCTTTGA 58.046 40.909 0.00 0.00 33.23 2.69
3111 4394 4.913335 ATGCTCATAGTGGCATTCTTTG 57.087 40.909 0.00 0.00 45.41 2.77
3118 4401 1.202615 GCTGAGATGCTCATAGTGGCA 60.203 52.381 0.00 0.00 39.92 4.92
3119 4402 1.202615 TGCTGAGATGCTCATAGTGGC 60.203 52.381 0.00 0.00 39.92 5.01
3120 4403 2.904697 TGCTGAGATGCTCATAGTGG 57.095 50.000 0.00 0.00 39.92 4.00
3121 4404 5.756833 TGTTTATGCTGAGATGCTCATAGTG 59.243 40.000 0.00 0.00 39.92 2.74
3122 4405 5.757320 GTGTTTATGCTGAGATGCTCATAGT 59.243 40.000 0.00 0.00 39.92 2.12
3123 4406 5.990386 AGTGTTTATGCTGAGATGCTCATAG 59.010 40.000 0.00 0.00 39.92 2.23
3124 4407 5.922053 AGTGTTTATGCTGAGATGCTCATA 58.078 37.500 0.00 0.00 39.92 2.15
3125 4408 4.778579 AGTGTTTATGCTGAGATGCTCAT 58.221 39.130 0.00 0.00 39.92 2.90
3126 4409 4.212143 AGTGTTTATGCTGAGATGCTCA 57.788 40.909 0.00 0.00 38.25 4.26
3127 4410 4.394300 ACAAGTGTTTATGCTGAGATGCTC 59.606 41.667 0.00 0.00 0.00 4.26
3128 4411 4.330250 ACAAGTGTTTATGCTGAGATGCT 58.670 39.130 0.00 0.00 0.00 3.79
3129 4412 4.154737 TGACAAGTGTTTATGCTGAGATGC 59.845 41.667 0.00 0.00 0.00 3.91
3130 4413 5.868043 TGACAAGTGTTTATGCTGAGATG 57.132 39.130 0.00 0.00 0.00 2.90
3131 4414 7.066284 GGTATTGACAAGTGTTTATGCTGAGAT 59.934 37.037 0.00 0.00 0.00 2.75
3132 4415 6.371548 GGTATTGACAAGTGTTTATGCTGAGA 59.628 38.462 0.00 0.00 0.00 3.27
3133 4416 6.149308 TGGTATTGACAAGTGTTTATGCTGAG 59.851 38.462 0.00 0.00 0.00 3.35
3134 4417 6.000840 TGGTATTGACAAGTGTTTATGCTGA 58.999 36.000 0.00 0.00 0.00 4.26
3135 4418 6.072508 AGTGGTATTGACAAGTGTTTATGCTG 60.073 38.462 0.00 0.00 0.00 4.41
3136 4419 6.003950 AGTGGTATTGACAAGTGTTTATGCT 58.996 36.000 0.00 0.00 0.00 3.79
3186 4469 8.115384 TCCAAAAGAATTCATTCCTGGAATCTA 58.885 33.333 18.87 10.24 37.49 1.98
3187 4470 6.955851 TCCAAAAGAATTCATTCCTGGAATCT 59.044 34.615 18.87 10.93 37.49 2.40
3188 4471 7.174107 TCCAAAAGAATTCATTCCTGGAATC 57.826 36.000 18.87 8.76 37.49 2.52
3189 4472 7.557875 TTCCAAAAGAATTCATTCCTGGAAT 57.442 32.000 18.83 16.15 41.08 3.01
3190 4473 6.992664 TTCCAAAAGAATTCATTCCTGGAA 57.007 33.333 18.83 18.83 42.27 3.53
3191 4474 6.992664 TTTCCAAAAGAATTCATTCCTGGA 57.007 33.333 11.15 11.15 38.09 3.86
3192 4475 6.596497 CCATTTCCAAAAGAATTCATTCCTGG 59.404 38.462 8.44 7.89 37.51 4.45
3193 4476 6.093082 GCCATTTCCAAAAGAATTCATTCCTG 59.907 38.462 8.44 0.00 37.51 3.86
3194 4477 6.013119 AGCCATTTCCAAAAGAATTCATTCCT 60.013 34.615 8.44 0.00 37.51 3.36
3195 4478 6.093082 CAGCCATTTCCAAAAGAATTCATTCC 59.907 38.462 8.44 0.00 37.51 3.01
3196 4479 6.402875 GCAGCCATTTCCAAAAGAATTCATTC 60.403 38.462 8.44 0.00 33.44 2.67
3197 4480 5.413523 GCAGCCATTTCCAAAAGAATTCATT 59.586 36.000 8.44 0.00 33.44 2.57
3198 4481 4.939439 GCAGCCATTTCCAAAAGAATTCAT 59.061 37.500 8.44 0.00 33.44 2.57
3199 4482 4.317488 GCAGCCATTTCCAAAAGAATTCA 58.683 39.130 8.44 0.00 33.44 2.57
3200 4483 3.686241 GGCAGCCATTTCCAAAAGAATTC 59.314 43.478 6.55 0.00 33.44 2.17
3201 4484 3.328637 AGGCAGCCATTTCCAAAAGAATT 59.671 39.130 15.80 0.00 33.44 2.17
3202 4485 2.908351 AGGCAGCCATTTCCAAAAGAAT 59.092 40.909 15.80 0.00 33.44 2.40
3203 4486 2.037511 CAGGCAGCCATTTCCAAAAGAA 59.962 45.455 15.80 0.00 0.00 2.52
3204 4487 1.619827 CAGGCAGCCATTTCCAAAAGA 59.380 47.619 15.80 0.00 0.00 2.52
3205 4488 1.942586 GCAGGCAGCCATTTCCAAAAG 60.943 52.381 15.80 0.00 37.23 2.27
3206 4489 0.035176 GCAGGCAGCCATTTCCAAAA 59.965 50.000 15.80 0.00 37.23 2.44
3207 4490 1.120184 TGCAGGCAGCCATTTCCAAA 61.120 50.000 15.80 0.00 44.83 3.28
3208 4491 1.533513 TGCAGGCAGCCATTTCCAA 60.534 52.632 15.80 0.00 44.83 3.53
3209 4492 1.980232 CTGCAGGCAGCCATTTCCA 60.980 57.895 15.80 1.81 44.83 3.53
3210 4493 2.890371 CTGCAGGCAGCCATTTCC 59.110 61.111 15.80 0.00 44.83 3.13
3218 4501 0.731417 GCTGTATCAACTGCAGGCAG 59.269 55.000 19.93 19.11 46.56 4.85
3219 4502 2.858622 GCTGTATCAACTGCAGGCA 58.141 52.632 19.93 0.75 46.56 4.75
3225 4508 1.065926 TGCCTCCAGCTGTATCAACTG 60.066 52.381 13.81 0.00 44.23 3.16
3226 4509 1.279496 TGCCTCCAGCTGTATCAACT 58.721 50.000 13.81 0.00 44.23 3.16
3227 4510 2.216898 GATGCCTCCAGCTGTATCAAC 58.783 52.381 13.81 0.42 44.23 3.18
3228 4511 1.141657 GGATGCCTCCAGCTGTATCAA 59.858 52.381 13.81 0.00 44.23 2.57
3229 4512 0.761187 GGATGCCTCCAGCTGTATCA 59.239 55.000 13.81 5.36 44.23 2.15
3230 4513 1.055040 AGGATGCCTCCAGCTGTATC 58.945 55.000 13.81 8.05 44.79 2.24
3231 4514 2.405618 TAGGATGCCTCCAGCTGTAT 57.594 50.000 13.81 0.00 44.79 2.29
3232 4515 2.174685 TTAGGATGCCTCCAGCTGTA 57.825 50.000 13.81 0.00 44.79 2.74
3233 4516 1.516110 ATTAGGATGCCTCCAGCTGT 58.484 50.000 13.81 0.00 44.79 4.40
3234 4517 2.027377 CCTATTAGGATGCCTCCAGCTG 60.027 54.545 6.78 6.78 44.79 4.24
3235 4518 2.264455 CCTATTAGGATGCCTCCAGCT 58.736 52.381 10.92 0.00 44.79 4.24
3236 4519 1.981495 ACCTATTAGGATGCCTCCAGC 59.019 52.381 16.80 0.00 44.79 4.85
3237 4520 3.515562 AGACCTATTAGGATGCCTCCAG 58.484 50.000 16.80 0.00 44.79 3.86
3238 4521 3.637821 AGACCTATTAGGATGCCTCCA 57.362 47.619 16.80 0.00 44.79 3.86
3239 4522 5.046231 CCTTAAGACCTATTAGGATGCCTCC 60.046 48.000 16.80 0.00 37.67 4.30
3240 4523 5.780793 TCCTTAAGACCTATTAGGATGCCTC 59.219 44.000 16.80 3.17 37.67 4.70
3241 4524 5.727630 TCCTTAAGACCTATTAGGATGCCT 58.272 41.667 16.80 5.10 37.67 4.75
3242 4525 6.213600 TCATCCTTAAGACCTATTAGGATGCC 59.786 42.308 16.80 3.02 46.34 4.40
3243 4526 7.246171 TCATCCTTAAGACCTATTAGGATGC 57.754 40.000 16.80 5.49 46.34 3.91
3252 4535 9.434275 TCTCAAATGTATCATCCTTAAGACCTA 57.566 33.333 3.36 0.00 0.00 3.08
3253 4536 8.324191 TCTCAAATGTATCATCCTTAAGACCT 57.676 34.615 3.36 0.00 0.00 3.85
3254 4537 9.213799 GATCTCAAATGTATCATCCTTAAGACC 57.786 37.037 3.36 0.00 0.00 3.85
3255 4538 9.213799 GGATCTCAAATGTATCATCCTTAAGAC 57.786 37.037 3.36 0.00 0.00 3.01
3256 4539 9.163894 AGGATCTCAAATGTATCATCCTTAAGA 57.836 33.333 3.36 0.00 37.46 2.10
3260 4543 9.336462 AGATAGGATCTCAAATGTATCATCCTT 57.664 33.333 3.67 0.00 40.52 3.36
3261 4544 8.914213 AGATAGGATCTCAAATGTATCATCCT 57.086 34.615 3.83 3.83 42.32 3.24
3262 4545 9.381033 CAAGATAGGATCTCAAATGTATCATCC 57.619 37.037 0.00 0.00 39.08 3.51
3263 4546 9.941325 ACAAGATAGGATCTCAAATGTATCATC 57.059 33.333 0.00 0.00 39.08 2.92
3264 4547 9.722184 CACAAGATAGGATCTCAAATGTATCAT 57.278 33.333 0.00 0.00 39.08 2.45
3265 4548 8.927411 TCACAAGATAGGATCTCAAATGTATCA 58.073 33.333 0.00 0.00 39.08 2.15
3266 4549 9.202273 GTCACAAGATAGGATCTCAAATGTATC 57.798 37.037 0.00 0.00 39.08 2.24
3267 4550 8.708378 TGTCACAAGATAGGATCTCAAATGTAT 58.292 33.333 0.00 0.00 39.08 2.29
3268 4551 8.078060 TGTCACAAGATAGGATCTCAAATGTA 57.922 34.615 0.00 0.00 39.08 2.29
3269 4552 6.950842 TGTCACAAGATAGGATCTCAAATGT 58.049 36.000 0.00 0.00 39.08 2.71
3270 4553 7.172875 GGATGTCACAAGATAGGATCTCAAATG 59.827 40.741 0.00 0.00 39.08 2.32
3271 4554 7.147426 TGGATGTCACAAGATAGGATCTCAAAT 60.147 37.037 0.00 0.00 39.08 2.32
3272 4555 6.156775 TGGATGTCACAAGATAGGATCTCAAA 59.843 38.462 0.00 0.00 39.08 2.69
3273 4556 5.662657 TGGATGTCACAAGATAGGATCTCAA 59.337 40.000 0.00 0.00 39.08 3.02
3274 4557 5.211201 TGGATGTCACAAGATAGGATCTCA 58.789 41.667 0.00 0.00 39.08 3.27
3275 4558 5.798125 TGGATGTCACAAGATAGGATCTC 57.202 43.478 0.00 0.00 39.08 2.75
3276 4559 7.015680 ACTATGGATGTCACAAGATAGGATCT 58.984 38.462 0.00 0.00 42.61 2.75
3277 4560 7.238486 ACTATGGATGTCACAAGATAGGATC 57.762 40.000 6.21 0.00 0.00 3.36
3278 4561 7.623999 AACTATGGATGTCACAAGATAGGAT 57.376 36.000 6.21 0.00 0.00 3.24
3279 4562 7.437713 AAACTATGGATGTCACAAGATAGGA 57.562 36.000 6.21 0.00 0.00 2.94
3280 4563 8.400947 CAAAAACTATGGATGTCACAAGATAGG 58.599 37.037 6.21 0.00 0.00 2.57
3281 4564 8.950210 ACAAAAACTATGGATGTCACAAGATAG 58.050 33.333 0.00 0.00 0.00 2.08
3282 4565 8.729756 CACAAAAACTATGGATGTCACAAGATA 58.270 33.333 0.00 0.00 0.00 1.98
3283 4566 7.231317 ACACAAAAACTATGGATGTCACAAGAT 59.769 33.333 0.00 0.00 0.00 2.40
3284 4567 6.545666 ACACAAAAACTATGGATGTCACAAGA 59.454 34.615 0.00 0.00 0.00 3.02
3285 4568 6.738114 ACACAAAAACTATGGATGTCACAAG 58.262 36.000 0.00 0.00 0.00 3.16
3286 4569 6.707440 ACACAAAAACTATGGATGTCACAA 57.293 33.333 0.00 0.00 0.00 3.33
3287 4570 6.707440 AACACAAAAACTATGGATGTCACA 57.293 33.333 0.00 0.00 0.00 3.58
3288 4571 6.640907 GGAAACACAAAAACTATGGATGTCAC 59.359 38.462 0.00 0.00 0.00 3.67
3289 4572 6.549364 AGGAAACACAAAAACTATGGATGTCA 59.451 34.615 0.00 0.00 0.00 3.58
3290 4573 6.863126 CAGGAAACACAAAAACTATGGATGTC 59.137 38.462 0.00 0.00 0.00 3.06
3291 4574 6.323739 ACAGGAAACACAAAAACTATGGATGT 59.676 34.615 0.00 0.00 0.00 3.06
3292 4575 6.748132 ACAGGAAACACAAAAACTATGGATG 58.252 36.000 0.00 0.00 0.00 3.51
3293 4576 6.777580 AGACAGGAAACACAAAAACTATGGAT 59.222 34.615 0.00 0.00 0.00 3.41
3294 4577 6.126409 AGACAGGAAACACAAAAACTATGGA 58.874 36.000 0.00 0.00 0.00 3.41
3295 4578 6.391227 AGACAGGAAACACAAAAACTATGG 57.609 37.500 0.00 0.00 0.00 2.74
3296 4579 7.707104 AGAAGACAGGAAACACAAAAACTATG 58.293 34.615 0.00 0.00 0.00 2.23
3297 4580 7.556275 TGAGAAGACAGGAAACACAAAAACTAT 59.444 33.333 0.00 0.00 0.00 2.12
3298 4581 6.882140 TGAGAAGACAGGAAACACAAAAACTA 59.118 34.615 0.00 0.00 0.00 2.24
3299 4582 5.710099 TGAGAAGACAGGAAACACAAAAACT 59.290 36.000 0.00 0.00 0.00 2.66
3300 4583 5.949735 TGAGAAGACAGGAAACACAAAAAC 58.050 37.500 0.00 0.00 0.00 2.43
3301 4584 5.943416 TCTGAGAAGACAGGAAACACAAAAA 59.057 36.000 0.00 0.00 38.31 1.94
3302 4585 5.496556 TCTGAGAAGACAGGAAACACAAAA 58.503 37.500 0.00 0.00 38.31 2.44
3303 4586 5.097742 TCTGAGAAGACAGGAAACACAAA 57.902 39.130 0.00 0.00 38.31 2.83
3304 4587 4.753516 TCTGAGAAGACAGGAAACACAA 57.246 40.909 0.00 0.00 38.31 3.33
3305 4588 4.635223 CATCTGAGAAGACAGGAAACACA 58.365 43.478 0.00 0.00 38.31 3.72
3306 4589 3.434984 GCATCTGAGAAGACAGGAAACAC 59.565 47.826 0.00 0.00 38.31 3.32
3307 4590 3.071457 TGCATCTGAGAAGACAGGAAACA 59.929 43.478 0.00 0.00 38.31 2.83
3308 4591 3.668447 TGCATCTGAGAAGACAGGAAAC 58.332 45.455 0.00 0.00 38.31 2.78
3309 4592 3.580022 TCTGCATCTGAGAAGACAGGAAA 59.420 43.478 9.06 0.00 38.31 3.13
3310 4593 3.168292 TCTGCATCTGAGAAGACAGGAA 58.832 45.455 9.06 0.00 38.31 3.36
3311 4594 2.812658 TCTGCATCTGAGAAGACAGGA 58.187 47.619 9.06 0.00 38.31 3.86
3312 4595 3.606595 TTCTGCATCTGAGAAGACAGG 57.393 47.619 9.06 0.00 38.31 4.00
3313 4596 6.036953 GGTTATTTCTGCATCTGAGAAGACAG 59.963 42.308 4.05 4.05 39.02 3.51
3314 4597 5.877012 GGTTATTTCTGCATCTGAGAAGACA 59.123 40.000 0.00 0.00 31.17 3.41
3315 4598 5.877012 TGGTTATTTCTGCATCTGAGAAGAC 59.123 40.000 0.00 0.00 31.17 3.01
3316 4599 6.053632 TGGTTATTTCTGCATCTGAGAAGA 57.946 37.500 0.00 0.00 31.17 2.87
3317 4600 6.939132 ATGGTTATTTCTGCATCTGAGAAG 57.061 37.500 0.00 0.00 31.17 2.85
3318 4601 8.806429 TTTATGGTTATTTCTGCATCTGAGAA 57.194 30.769 0.00 0.00 0.00 2.87
3319 4602 8.267183 TCTTTATGGTTATTTCTGCATCTGAGA 58.733 33.333 0.00 0.00 0.00 3.27
3320 4603 8.442632 TCTTTATGGTTATTTCTGCATCTGAG 57.557 34.615 0.00 0.00 0.00 3.35
3321 4604 8.806429 TTCTTTATGGTTATTTCTGCATCTGA 57.194 30.769 0.00 0.00 0.00 3.27
3322 4605 9.459640 CATTCTTTATGGTTATTTCTGCATCTG 57.540 33.333 0.00 0.00 0.00 2.90
3347 4630 9.213777 AGAACCATAAACATAGATAAGTCTCCA 57.786 33.333 0.00 0.00 35.87 3.86
3348 4631 9.482627 CAGAACCATAAACATAGATAAGTCTCC 57.517 37.037 0.00 0.00 35.87 3.71
3349 4632 8.983724 GCAGAACCATAAACATAGATAAGTCTC 58.016 37.037 0.00 0.00 35.87 3.36
3350 4633 8.486210 TGCAGAACCATAAACATAGATAAGTCT 58.514 33.333 0.00 0.00 38.52 3.24
3351 4634 8.662781 TGCAGAACCATAAACATAGATAAGTC 57.337 34.615 0.00 0.00 0.00 3.01
3356 4639 9.970553 ATCATATGCAGAACCATAAACATAGAT 57.029 29.630 0.00 0.00 31.96 1.98
3357 4640 9.223099 CATCATATGCAGAACCATAAACATAGA 57.777 33.333 0.00 0.00 31.96 1.98
3358 4641 9.223099 TCATCATATGCAGAACCATAAACATAG 57.777 33.333 0.00 0.00 31.96 2.23
3359 4642 9.223099 CTCATCATATGCAGAACCATAAACATA 57.777 33.333 0.00 0.00 31.96 2.29
3360 4643 7.176165 CCTCATCATATGCAGAACCATAAACAT 59.824 37.037 0.00 0.00 31.96 2.71
3361 4644 6.487668 CCTCATCATATGCAGAACCATAAACA 59.512 38.462 0.00 0.00 31.96 2.83
3362 4645 6.072286 CCCTCATCATATGCAGAACCATAAAC 60.072 42.308 0.00 0.00 31.96 2.01
3363 4646 6.005823 CCCTCATCATATGCAGAACCATAAA 58.994 40.000 0.00 0.00 31.96 1.40
3364 4647 5.563592 CCCTCATCATATGCAGAACCATAA 58.436 41.667 0.00 0.00 31.96 1.90
3365 4648 4.566278 GCCCTCATCATATGCAGAACCATA 60.566 45.833 0.00 0.00 32.67 2.74
3366 4649 3.813240 GCCCTCATCATATGCAGAACCAT 60.813 47.826 0.00 0.00 0.00 3.55
3367 4650 2.487805 GCCCTCATCATATGCAGAACCA 60.488 50.000 0.00 0.00 0.00 3.67
3368 4651 2.157738 GCCCTCATCATATGCAGAACC 58.842 52.381 0.00 0.00 0.00 3.62
3369 4652 2.854963 TGCCCTCATCATATGCAGAAC 58.145 47.619 0.00 0.00 0.00 3.01
3370 4653 3.483421 CTTGCCCTCATCATATGCAGAA 58.517 45.455 0.00 0.00 32.88 3.02
3371 4654 2.812983 GCTTGCCCTCATCATATGCAGA 60.813 50.000 0.00 0.00 32.88 4.26
3372 4655 1.540267 GCTTGCCCTCATCATATGCAG 59.460 52.381 0.00 0.00 32.88 4.41
3373 4656 1.144298 AGCTTGCCCTCATCATATGCA 59.856 47.619 0.00 0.00 0.00 3.96
3374 4657 1.906990 AGCTTGCCCTCATCATATGC 58.093 50.000 0.00 0.00 0.00 3.14
3375 4658 3.252701 GTCAAGCTTGCCCTCATCATATG 59.747 47.826 21.99 0.00 0.00 1.78
3376 4659 3.137913 AGTCAAGCTTGCCCTCATCATAT 59.862 43.478 21.99 0.00 0.00 1.78
3377 4660 2.507058 AGTCAAGCTTGCCCTCATCATA 59.493 45.455 21.99 0.00 0.00 2.15
3378 4661 1.284198 AGTCAAGCTTGCCCTCATCAT 59.716 47.619 21.99 0.00 0.00 2.45
3379 4662 0.694771 AGTCAAGCTTGCCCTCATCA 59.305 50.000 21.99 0.00 0.00 3.07
3380 4663 1.831580 AAGTCAAGCTTGCCCTCATC 58.168 50.000 21.99 5.79 35.80 2.92
3381 4664 2.299326 AAAGTCAAGCTTGCCCTCAT 57.701 45.000 21.99 9.35 37.52 2.90
3382 4665 2.949177 TAAAGTCAAGCTTGCCCTCA 57.051 45.000 21.99 0.56 37.52 3.86
3383 4666 5.897377 TTAATAAAGTCAAGCTTGCCCTC 57.103 39.130 21.99 11.30 37.52 4.30
3384 4667 5.951747 TCATTAATAAAGTCAAGCTTGCCCT 59.048 36.000 21.99 15.99 37.52 5.19
3385 4668 6.207691 TCATTAATAAAGTCAAGCTTGCCC 57.792 37.500 21.99 13.98 37.52 5.36
3386 4669 8.707938 AATTCATTAATAAAGTCAAGCTTGCC 57.292 30.769 21.99 11.00 37.52 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.