Multiple sequence alignment - TraesCS5A01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G087400 chr5A 100.000 5059 0 0 1 5059 116588352 116583294 0.000000e+00 9343.0
1 TraesCS5A01G087400 chr5A 92.506 2095 148 5 2365 4457 116776535 116774448 0.000000e+00 2990.0
2 TraesCS5A01G087400 chr5A 90.228 1576 146 5 1969 3540 116697564 116695993 0.000000e+00 2050.0
3 TraesCS5A01G087400 chr5A 86.118 1736 199 22 254 1972 116781147 116779437 0.000000e+00 1832.0
4 TraesCS5A01G087400 chr5A 97.508 883 22 0 3577 4459 116695996 116695114 0.000000e+00 1509.0
5 TraesCS5A01G087400 chr5A 87.326 1294 140 10 684 1972 116698864 116697590 0.000000e+00 1459.0
6 TraesCS5A01G087400 chr5A 92.651 381 26 1 1969 2347 116779411 116779031 9.580000e-152 547.0
7 TraesCS5A01G087400 chr5A 73.366 811 197 13 2503 3309 117388437 117389232 2.980000e-72 283.0
8 TraesCS5A01G087400 chr5A 92.147 191 14 1 4270 4459 116774086 116773896 8.350000e-68 268.0
9 TraesCS5A01G087400 chr5A 91.623 191 15 1 4270 4459 116694754 116694564 3.880000e-66 263.0
10 TraesCS5A01G087400 chr5A 90.104 192 17 2 4270 4459 116695029 116694838 1.090000e-61 248.0
11 TraesCS5A01G087400 chr5A 88.542 192 20 2 4270 4459 116774361 116774170 1.100000e-56 231.0
12 TraesCS5A01G087400 chr5D 96.147 4204 140 11 39 4221 110365256 110369458 0.000000e+00 6846.0
13 TraesCS5A01G087400 chr5D 88.138 4350 406 55 35 4305 110346786 110351104 0.000000e+00 5073.0
14 TraesCS5A01G087400 chr5D 93.894 606 33 3 4455 5059 110369624 110370226 0.000000e+00 911.0
15 TraesCS5A01G087400 chr5D 73.920 1204 294 15 2113 3309 109943834 109942644 2.760000e-127 466.0
16 TraesCS5A01G087400 chr5D 96.341 82 2 1 4379 4459 110351104 110351185 3.180000e-27 134.0
17 TraesCS5A01G087400 chr5B 87.023 4269 432 59 41 4227 122439710 122435482 0.000000e+00 4702.0
18 TraesCS5A01G087400 chr5B 88.006 617 55 11 4455 5059 122435321 122434712 0.000000e+00 712.0
19 TraesCS5A01G087400 chr5B 74.274 1205 288 16 2113 3309 122831446 122832636 5.890000e-134 488.0
20 TraesCS5A01G087400 chrUn 86.753 385 47 2 846 1227 480886713 480887096 4.680000e-115 425.0
21 TraesCS5A01G087400 chr6A 95.946 74 2 1 4305 4378 435605309 435605381 8.900000e-23 119.0
22 TraesCS5A01G087400 chr6B 93.671 79 4 1 4303 4381 290716619 290716696 3.200000e-22 117.0
23 TraesCS5A01G087400 chr4A 93.506 77 5 0 4306 4382 321906749 321906673 1.150000e-21 115.0
24 TraesCS5A01G087400 chr7A 87.342 79 9 1 4210 4288 484671381 484671304 6.980000e-14 89.8
25 TraesCS5A01G087400 chr3B 84.058 69 9 2 2029 2096 829213233 829213300 1.180000e-06 65.8
26 TraesCS5A01G087400 chr3B 100.000 31 0 0 2029 2059 817011814 817011784 1.970000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G087400 chr5A 116583294 116588352 5058 True 9343.0 9343 100.0000 1 5059 1 chr5A.!!$R1 5058
1 TraesCS5A01G087400 chr5A 116773896 116781147 7251 True 1173.6 2990 90.3928 254 4459 5 chr5A.!!$R3 4205
2 TraesCS5A01G087400 chr5A 116694564 116698864 4300 True 1105.8 2050 91.3578 684 4459 5 chr5A.!!$R2 3775
3 TraesCS5A01G087400 chr5A 117388437 117389232 795 False 283.0 283 73.3660 2503 3309 1 chr5A.!!$F1 806
4 TraesCS5A01G087400 chr5D 110365256 110370226 4970 False 3878.5 6846 95.0205 39 5059 2 chr5D.!!$F2 5020
5 TraesCS5A01G087400 chr5D 110346786 110351185 4399 False 2603.5 5073 92.2395 35 4459 2 chr5D.!!$F1 4424
6 TraesCS5A01G087400 chr5D 109942644 109943834 1190 True 466.0 466 73.9200 2113 3309 1 chr5D.!!$R1 1196
7 TraesCS5A01G087400 chr5B 122434712 122439710 4998 True 2707.0 4702 87.5145 41 5059 2 chr5B.!!$R1 5018
8 TraesCS5A01G087400 chr5B 122831446 122832636 1190 False 488.0 488 74.2740 2113 3309 1 chr5B.!!$F1 1196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 1.069358 GAAGATACTTCCTCCGCCCAG 59.931 57.143 0.00 0.0 0.0 4.45 F
1452 1508 0.693049 ATGTTTTCTCCAGGCCGAGT 59.307 50.000 7.44 0.0 0.0 4.18 F
1507 1563 0.749049 CATGGAGATGACGAGGCTCA 59.251 55.000 15.95 0.0 0.0 4.26 F
1704 1760 1.144093 TCGGTGTCCCAAAAACCTGAT 59.856 47.619 0.00 0.0 0.0 2.90 F
3482 6055 0.533032 GGTTTCCTCCTCCTCGTCTG 59.467 60.000 0.00 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1812 0.040058 TCCCATGCTTCATTGCTGGT 59.960 50.000 0.00 0.0 32.92 4.00 R
3192 5765 3.139770 AGAGCTTGCATATTCCCAATCCT 59.860 43.478 0.00 0.0 0.00 3.24 R
3281 5854 5.309806 ACCAAGTATCCTTAGTTTGGTCAGT 59.690 40.000 1.58 0.0 0.00 3.41 R
3649 6222 3.832527 TCTTTAGGCCTTGCTGTTCTTT 58.167 40.909 12.58 0.0 0.00 2.52 R
4424 7558 0.537188 CTCCAATGGTCCAGCGTACT 59.463 55.000 0.00 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.465512 GCACGGAGGCGCATGTTG 62.466 66.667 10.83 0.00 0.00 3.33
18 19 2.741985 CACGGAGGCGCATGTTGA 60.742 61.111 10.83 0.00 0.00 3.18
19 20 2.742372 ACGGAGGCGCATGTTGAC 60.742 61.111 10.83 0.00 0.00 3.18
20 21 2.741985 CGGAGGCGCATGTTGACA 60.742 61.111 10.83 0.00 0.00 3.58
21 22 2.324330 CGGAGGCGCATGTTGACAA 61.324 57.895 10.83 0.00 0.00 3.18
22 23 1.647545 CGGAGGCGCATGTTGACAAT 61.648 55.000 10.83 0.00 0.00 2.71
23 24 1.378531 GGAGGCGCATGTTGACAATA 58.621 50.000 10.83 0.00 0.00 1.90
24 25 1.949525 GGAGGCGCATGTTGACAATAT 59.050 47.619 10.83 0.00 0.00 1.28
25 26 2.358898 GGAGGCGCATGTTGACAATATT 59.641 45.455 10.83 0.00 0.00 1.28
26 27 3.181487 GGAGGCGCATGTTGACAATATTT 60.181 43.478 10.83 0.00 0.00 1.40
27 28 4.423732 GAGGCGCATGTTGACAATATTTT 58.576 39.130 10.83 0.00 0.00 1.82
28 29 4.423732 AGGCGCATGTTGACAATATTTTC 58.576 39.130 10.83 0.00 0.00 2.29
29 30 4.158394 AGGCGCATGTTGACAATATTTTCT 59.842 37.500 10.83 0.00 0.00 2.52
30 31 4.500477 GGCGCATGTTGACAATATTTTCTC 59.500 41.667 10.83 0.00 0.00 2.87
31 32 4.500477 GCGCATGTTGACAATATTTTCTCC 59.500 41.667 0.30 0.00 0.00 3.71
32 33 5.639757 CGCATGTTGACAATATTTTCTCCA 58.360 37.500 3.41 0.92 0.00 3.86
33 34 6.092092 CGCATGTTGACAATATTTTCTCCAA 58.908 36.000 3.41 0.00 0.00 3.53
36 37 8.243426 GCATGTTGACAATATTTTCTCCAAGTA 58.757 33.333 3.41 0.00 0.00 2.24
82 83 1.069358 GAAGATACTTCCTCCGCCCAG 59.931 57.143 0.00 0.00 0.00 4.45
100 101 4.780815 CCCAGAAATCTAAGGTGCACATA 58.219 43.478 20.43 10.17 0.00 2.29
196 204 6.293004 TGGATTGAAAAACACTTTCCAGTT 57.707 33.333 0.00 0.00 32.31 3.16
447 490 4.098807 GGTCTCTGTCTTCATCCCTCTTAC 59.901 50.000 0.00 0.00 0.00 2.34
941 987 5.938322 ACTTTGAAAGGTTATGCGTGTATG 58.062 37.500 10.02 0.00 0.00 2.39
1271 1320 2.753043 CATGCTGTCCCTGGGTGC 60.753 66.667 13.56 15.56 0.00 5.01
1288 1344 2.436646 CCGAGTCCAGCCGCAAAT 60.437 61.111 0.00 0.00 0.00 2.32
1404 1460 7.224297 TCAAACAAAGAGCTATTGAGGTTAGT 58.776 34.615 16.35 0.00 32.11 2.24
1415 1471 0.807496 GAGGTTAGTAGTCGGCGTGT 59.193 55.000 6.85 0.00 0.00 4.49
1452 1508 0.693049 ATGTTTTCTCCAGGCCGAGT 59.307 50.000 7.44 0.00 0.00 4.18
1507 1563 0.749049 CATGGAGATGACGAGGCTCA 59.251 55.000 15.95 0.00 0.00 4.26
1564 1620 3.806949 TGCTAACAGAAGGGGAATGTT 57.193 42.857 0.00 0.00 40.17 2.71
1704 1760 1.144093 TCGGTGTCCCAAAAACCTGAT 59.856 47.619 0.00 0.00 0.00 2.90
1814 1870 7.496529 TCAACAAAATAAGACAGTTCCTCAG 57.503 36.000 0.00 0.00 0.00 3.35
1847 1906 6.970484 GGTATGCAACCTTATTTACTCATGG 58.030 40.000 9.89 0.00 45.75 3.66
1933 1992 8.575589 TGAACTTTGTGTTAATGCTACATCAAT 58.424 29.630 0.00 0.00 39.30 2.57
1936 1995 9.410556 ACTTTGTGTTAATGCTACATCAATTTC 57.589 29.630 0.00 0.00 0.00 2.17
1941 2000 8.190122 GTGTTAATGCTACATCAATTTCATCCA 58.810 33.333 0.00 0.00 0.00 3.41
2104 2197 9.558396 AATCAAATGTGCTTTTCCTGAAAATAA 57.442 25.926 5.58 0.00 39.29 1.40
2626 5197 5.908247 AGGAAGTAGGAGAAGGCTATTTCAT 59.092 40.000 0.00 0.00 0.00 2.57
3050 5623 4.735822 CGACTCGATGTAAGAAGAATCACC 59.264 45.833 0.00 0.00 0.00 4.02
3192 5765 8.212312 TGGTTAATTGTACAGAGTTACCTGAAA 58.788 33.333 13.72 1.50 37.59 2.69
3281 5854 1.076412 TTTGCAGGAGTTGGGCACA 60.076 52.632 0.00 0.00 37.26 4.57
3482 6055 0.533032 GGTTTCCTCCTCCTCGTCTG 59.467 60.000 0.00 0.00 0.00 3.51
4240 6824 1.868713 TACTAGGTGATTTCCCCGCA 58.131 50.000 0.00 0.00 0.00 5.69
4424 7558 4.991153 TGTGTGTGGAAAAAGTATGCAA 57.009 36.364 0.00 0.00 0.00 4.08
4490 7624 8.840321 GCTTCTATAGGAAAATGTGAGCAAATA 58.160 33.333 0.00 0.00 33.07 1.40
4560 7695 5.624159 TGTTCATTGAGAAACCAGATCAGT 58.376 37.500 0.00 0.00 38.13 3.41
4641 7776 5.165961 TGTATTTCTTCCCACTTCCTGAG 57.834 43.478 0.00 0.00 0.00 3.35
4679 7814 7.276658 TGTCCACAATCAGACAGTTTAGTAAA 58.723 34.615 0.00 0.00 38.07 2.01
4726 7869 7.201617 GGTGTTGGTGCTACTATCAGTATTTTC 60.202 40.741 0.00 0.00 29.08 2.29
4752 7895 2.692557 CCCATTTGTTCAGTGTCCACAA 59.307 45.455 0.00 0.00 0.00 3.33
4760 7904 5.167121 TGTTCAGTGTCCACAAACATTTTG 58.833 37.500 11.85 0.00 35.65 2.44
4803 7948 8.777413 CATTCTGCTACTGCTAATTTATAAGCA 58.223 33.333 0.93 0.93 46.11 3.91
4867 8012 5.473504 TCTTTCTCAGTTTGCCAGTTATTCC 59.526 40.000 0.00 0.00 0.00 3.01
4959 8105 3.016474 GACGCTGAAACTCGCTGCC 62.016 63.158 0.00 0.00 0.00 4.85
5013 8159 2.639839 AGTGTGGACTGCTCTTACCAAT 59.360 45.455 0.00 0.00 34.11 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.465512 CAACATGCGCCTCCGTGC 62.466 66.667 4.18 0.00 46.11 5.34
1 2 2.741985 TCAACATGCGCCTCCGTG 60.742 61.111 4.18 0.00 36.67 4.94
2 3 2.742372 GTCAACATGCGCCTCCGT 60.742 61.111 4.18 0.00 36.67 4.69
3 4 1.647545 ATTGTCAACATGCGCCTCCG 61.648 55.000 4.18 0.00 37.57 4.63
4 5 1.378531 TATTGTCAACATGCGCCTCC 58.621 50.000 4.18 0.00 0.00 4.30
5 6 3.698029 AATATTGTCAACATGCGCCTC 57.302 42.857 4.18 0.00 0.00 4.70
6 7 4.158394 AGAAAATATTGTCAACATGCGCCT 59.842 37.500 4.18 0.00 0.00 5.52
7 8 4.423732 AGAAAATATTGTCAACATGCGCC 58.576 39.130 4.18 0.00 0.00 6.53
8 9 4.500477 GGAGAAAATATTGTCAACATGCGC 59.500 41.667 8.36 0.00 30.64 6.09
9 10 5.639757 TGGAGAAAATATTGTCAACATGCG 58.360 37.500 8.36 0.00 30.64 4.73
10 11 7.092716 ACTTGGAGAAAATATTGTCAACATGC 58.907 34.615 8.36 0.00 30.64 4.06
13 14 9.349713 AGTTACTTGGAGAAAATATTGTCAACA 57.650 29.630 8.36 3.66 30.64 3.33
16 17 9.667107 CCTAGTTACTTGGAGAAAATATTGTCA 57.333 33.333 7.04 0.00 30.64 3.58
17 18 9.110502 CCCTAGTTACTTGGAGAAAATATTGTC 57.889 37.037 14.13 0.00 0.00 3.18
18 19 8.053355 CCCCTAGTTACTTGGAGAAAATATTGT 58.947 37.037 14.13 0.00 0.00 2.71
19 20 8.272173 TCCCCTAGTTACTTGGAGAAAATATTG 58.728 37.037 14.13 0.00 0.00 1.90
20 21 8.401955 TCCCCTAGTTACTTGGAGAAAATATT 57.598 34.615 14.13 0.00 0.00 1.28
21 22 8.401955 TTCCCCTAGTTACTTGGAGAAAATAT 57.598 34.615 14.13 0.00 0.00 1.28
22 23 7.460082 ACTTCCCCTAGTTACTTGGAGAAAATA 59.540 37.037 14.13 0.00 25.74 1.40
23 24 6.274908 ACTTCCCCTAGTTACTTGGAGAAAAT 59.725 38.462 14.13 1.84 25.74 1.82
24 25 5.609708 ACTTCCCCTAGTTACTTGGAGAAAA 59.390 40.000 14.13 2.69 25.74 2.29
25 26 5.160386 ACTTCCCCTAGTTACTTGGAGAAA 58.840 41.667 14.13 4.82 25.74 2.52
26 27 4.759953 ACTTCCCCTAGTTACTTGGAGAA 58.240 43.478 14.13 11.39 0.00 2.87
27 28 4.415224 ACTTCCCCTAGTTACTTGGAGA 57.585 45.455 14.13 3.64 0.00 3.71
28 29 6.612049 AGATAACTTCCCCTAGTTACTTGGAG 59.388 42.308 14.13 6.48 41.85 3.86
29 30 6.383147 CAGATAACTTCCCCTAGTTACTTGGA 59.617 42.308 14.13 4.35 41.85 3.53
30 31 6.408206 CCAGATAACTTCCCCTAGTTACTTGG 60.408 46.154 5.88 5.88 41.85 3.61
31 32 6.156429 ACCAGATAACTTCCCCTAGTTACTTG 59.844 42.308 0.00 0.00 41.85 3.16
32 33 6.269974 ACCAGATAACTTCCCCTAGTTACTT 58.730 40.000 0.00 0.00 41.85 2.24
33 34 5.851418 ACCAGATAACTTCCCCTAGTTACT 58.149 41.667 0.00 0.00 41.85 2.24
36 37 6.158169 CCTTTACCAGATAACTTCCCCTAGTT 59.842 42.308 0.00 0.00 41.13 2.24
82 83 5.297029 GGGAAGTATGTGCACCTTAGATTTC 59.703 44.000 15.69 5.74 0.00 2.17
100 101 6.983906 AATCAAAGACAATTCTTGGGAAGT 57.016 33.333 0.00 0.00 41.56 3.01
196 204 4.387559 CCGATTTGATACAAAGTCGACACA 59.612 41.667 19.50 3.33 40.51 3.72
447 490 2.789842 CCAGCCATGGTGTCTGATG 58.210 57.895 14.67 1.49 42.17 3.07
1209 1258 2.037367 TAGGACAGCTCCCGCACT 59.963 61.111 0.00 0.00 37.25 4.40
1271 1320 2.436646 ATTTGCGGCTGGACTCGG 60.437 61.111 0.00 0.00 0.00 4.63
1404 1460 0.606130 TGTACCTCACACGCCGACTA 60.606 55.000 0.00 0.00 30.04 2.59
1415 1471 4.908601 ACATCATCAACCTTGTACCTCA 57.091 40.909 0.00 0.00 0.00 3.86
1452 1508 2.248248 CGGGGATCTATGCTTGTCCTA 58.752 52.381 0.00 0.00 0.00 2.94
1490 1546 1.137675 CAATGAGCCTCGTCATCTCCA 59.862 52.381 0.00 0.00 36.07 3.86
1564 1620 3.874807 TTAGCTGCTGCGCCGTTGA 62.875 57.895 13.43 0.00 45.42 3.18
1629 1685 3.307242 GCTTCTGGTACACTTGATTAGCG 59.693 47.826 0.00 0.00 0.00 4.26
1756 1812 0.040058 TCCCATGCTTCATTGCTGGT 59.960 50.000 0.00 0.00 32.92 4.00
1830 1889 7.961326 AAGATTGCCATGAGTAAATAAGGTT 57.039 32.000 0.00 0.00 0.00 3.50
1831 1890 9.646522 AATAAGATTGCCATGAGTAAATAAGGT 57.353 29.630 0.00 0.00 0.00 3.50
1847 1906 9.918630 ATGCATATTAGACCAAAATAAGATTGC 57.081 29.630 0.00 0.00 0.00 3.56
1902 1961 5.938322 AGCATTAACACAAAGTTCATACGG 58.062 37.500 0.00 0.00 41.64 4.02
1959 2018 3.120165 GGTGAAGCAGTAGTAAGCAAAGC 60.120 47.826 0.00 0.00 0.00 3.51
2076 2169 5.534207 TCAGGAAAAGCACATTTGATTGT 57.466 34.783 0.00 0.00 29.70 2.71
2104 2197 7.112122 TGTTGTAAGTATTCTGCTGGATGAAT 58.888 34.615 0.00 0.00 36.87 2.57
2626 5197 3.413846 AGCTTCTGTTGATCAGCTCAA 57.586 42.857 11.09 2.85 43.32 3.02
3050 5623 3.334691 TCCTAATTGTTCAGGAAGTGCG 58.665 45.455 0.00 0.00 38.02 5.34
3130 5703 7.119699 CCAGCTTCTGTAGTTGAACAATATTCA 59.880 37.037 0.00 0.00 37.27 2.57
3133 5706 5.355350 GCCAGCTTCTGTAGTTGAACAATAT 59.645 40.000 0.00 0.00 37.27 1.28
3192 5765 3.139770 AGAGCTTGCATATTCCCAATCCT 59.860 43.478 0.00 0.00 0.00 3.24
3281 5854 5.309806 ACCAAGTATCCTTAGTTTGGTCAGT 59.690 40.000 1.58 0.00 0.00 3.41
3649 6222 3.832527 TCTTTAGGCCTTGCTGTTCTTT 58.167 40.909 12.58 0.00 0.00 2.52
4240 6824 3.003897 TCTTTAAATTTCCGCAGCAACGT 59.996 39.130 0.00 0.00 0.00 3.99
4424 7558 0.537188 CTCCAATGGTCCAGCGTACT 59.463 55.000 0.00 0.00 0.00 2.73
4480 7614 8.025445 ACAAAGAATCAATCTGTATTTGCTCAC 58.975 33.333 0.00 0.00 38.79 3.51
4533 7667 7.780064 TGATCTGGTTTCTCAATGAACAAAAA 58.220 30.769 0.00 0.00 33.88 1.94
4537 7672 5.624159 ACTGATCTGGTTTCTCAATGAACA 58.376 37.500 4.49 0.00 33.88 3.18
4641 7776 0.598065 GTGGACAATCCTTGCACCAC 59.402 55.000 15.62 15.62 46.07 4.16
4679 7814 5.824624 CACCAGAGCAAAACCATGATATAGT 59.175 40.000 0.00 0.00 0.00 2.12
4681 7816 5.754782 ACACCAGAGCAAAACCATGATATA 58.245 37.500 0.00 0.00 0.00 0.86
4682 7817 4.603131 ACACCAGAGCAAAACCATGATAT 58.397 39.130 0.00 0.00 0.00 1.63
4688 7823 1.110442 CCAACACCAGAGCAAAACCA 58.890 50.000 0.00 0.00 0.00 3.67
4726 7869 3.503748 GGACACTGAACAAATGGGAAGAG 59.496 47.826 0.00 0.00 0.00 2.85
4752 7895 3.134442 ACATCAAGTGGTGGCAAAATGTT 59.866 39.130 0.00 0.00 0.00 2.71
4760 7904 3.758554 AGAATGTAACATCAAGTGGTGGC 59.241 43.478 0.00 0.00 0.00 5.01
4891 8037 3.873952 GCAGATGAAACTAGGCTAAGTGG 59.126 47.826 0.00 0.00 0.00 4.00
4959 8105 1.149174 AGCTAATCATGGCACCGGG 59.851 57.895 6.32 0.00 35.08 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.