Multiple sequence alignment - TraesCS5A01G085900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G085900 chr5A 100.000 8496 0 0 1 8496 113796242 113804737 0.000000e+00 15690.0
1 TraesCS5A01G085900 chr5A 94.595 37 1 1 8062 8097 679753232 679753268 1.000000e-03 56.5
2 TraesCS5A01G085900 chr5D 94.619 4163 151 34 3506 7652 108530690 108534795 0.000000e+00 6379.0
3 TraesCS5A01G085900 chr5D 97.485 1789 28 3 1636 3424 108528921 108530692 0.000000e+00 3038.0
4 TraesCS5A01G085900 chr5D 93.361 1672 43 26 1 1624 108527224 108528875 0.000000e+00 2410.0
5 TraesCS5A01G085900 chr5D 91.111 360 19 6 7648 8005 108534824 108535172 7.720000e-130 475.0
6 TraesCS5A01G085900 chr5D 88.083 193 20 3 8245 8437 108558945 108559134 8.580000e-55 226.0
7 TraesCS5A01G085900 chr5D 87.500 88 10 1 3111 3198 470752588 470752674 5.430000e-17 100.0
8 TraesCS5A01G085900 chr5B 92.888 2517 70 31 1 2460 119400042 119402506 0.000000e+00 3555.0
9 TraesCS5A01G085900 chr5B 89.345 1511 109 21 3506 4974 119403579 119405079 0.000000e+00 1851.0
10 TraesCS5A01G085900 chr5B 87.825 1347 85 42 5007 6313 119405519 119406826 0.000000e+00 1506.0
11 TraesCS5A01G085900 chr5B 96.179 916 35 0 2464 3379 119402638 119403553 0.000000e+00 1498.0
12 TraesCS5A01G085900 chr5B 90.114 880 69 10 6785 7652 119407438 119408311 0.000000e+00 1127.0
13 TraesCS5A01G085900 chr5B 88.520 392 22 11 7648 8032 119408340 119408715 3.620000e-123 453.0
14 TraesCS5A01G085900 chr5B 87.397 365 36 8 6333 6691 119406885 119407245 2.210000e-110 411.0
15 TraesCS5A01G085900 chr5B 84.324 185 21 2 8312 8496 119409139 119409315 3.150000e-39 174.0
16 TraesCS5A01G085900 chr5B 98.913 92 1 0 3418 3509 676928099 676928190 1.900000e-36 165.0
17 TraesCS5A01G085900 chr5B 85.470 117 16 1 8311 8426 119408926 119409042 4.170000e-23 121.0
18 TraesCS5A01G085900 chr5B 83.621 116 18 1 8312 8426 119409033 119409148 3.240000e-19 108.0
19 TraesCS5A01G085900 chr5B 85.227 88 12 1 3111 3198 577949263 577949349 1.170000e-13 89.8
20 TraesCS5A01G085900 chr6B 83.333 210 26 4 7002 7210 426739123 426738922 1.460000e-42 185.0
21 TraesCS5A01G085900 chr7B 98.901 91 1 0 3423 3513 194555207 194555117 6.820000e-36 163.0
22 TraesCS5A01G085900 chr7B 97.872 94 1 1 3415 3508 432933331 432933239 2.450000e-35 161.0
23 TraesCS5A01G085900 chr3B 96.939 98 2 1 3413 3510 793269107 793269203 6.820000e-36 163.0
24 TraesCS5A01G085900 chr3B 91.892 111 6 3 3423 3530 804794021 804794131 1.480000e-32 152.0
25 TraesCS5A01G085900 chr3B 100.000 29 0 0 8070 8098 23957931 23957959 4.000000e-03 54.7
26 TraesCS5A01G085900 chr2A 96.000 100 4 0 3414 3513 68248998 68249097 6.820000e-36 163.0
27 TraesCS5A01G085900 chr2A 95.918 98 3 1 3413 3510 82344886 82344982 3.170000e-34 158.0
28 TraesCS5A01G085900 chr2D 94.340 106 3 3 3404 3508 592140702 592140599 8.830000e-35 159.0
29 TraesCS5A01G085900 chr2D 100.000 29 0 0 8070 8098 122702376 122702348 4.000000e-03 54.7
30 TraesCS5A01G085900 chr4A 95.918 98 3 1 3413 3510 615525514 615525418 3.170000e-34 158.0
31 TraesCS5A01G085900 chrUn 76.868 281 48 16 6022 6298 216302110 216302377 8.890000e-30 143.0
32 TraesCS5A01G085900 chr4D 76.868 281 48 16 6022 6298 131329743 131330010 8.890000e-30 143.0
33 TraesCS5A01G085900 chr4D 100.000 29 0 0 8070 8098 9219121 9219093 4.000000e-03 54.7
34 TraesCS5A01G085900 chr7D 100.000 34 0 0 8066 8099 93979773 93979740 7.120000e-06 63.9
35 TraesCS5A01G085900 chr7D 96.875 32 1 0 8066 8097 375975823 375975854 4.000000e-03 54.7
36 TraesCS5A01G085900 chr4B 96.875 32 1 0 8066 8097 166785446 166785477 4.000000e-03 54.7
37 TraesCS5A01G085900 chr3D 100.000 29 0 0 8071 8099 6459466 6459438 4.000000e-03 54.7
38 TraesCS5A01G085900 chr2B 100.000 29 0 0 8069 8097 562680492 562680464 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G085900 chr5A 113796242 113804737 8495 False 15690.0 15690 100.0000 1 8496 1 chr5A.!!$F1 8495
1 TraesCS5A01G085900 chr5D 108527224 108535172 7948 False 3075.5 6379 94.1440 1 8005 4 chr5D.!!$F3 8004
2 TraesCS5A01G085900 chr5B 119400042 119409315 9273 False 1080.4 3555 88.5683 1 8496 10 chr5B.!!$F3 8495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.032615 TTCTCCCTGCTCTCTCCCTC 60.033 60.000 0.00 0.0 0.00 4.30 F
254 255 0.923729 TCTCCCTGCTCTCTCCCTCT 60.924 60.000 0.00 0.0 0.00 3.69 F
689 736 1.203001 CCAAGTTTCCAACCCCAGCTA 60.203 52.381 0.00 0.0 0.00 3.32 F
1765 1851 1.480137 TGTTGTTCCAAGTTGCCCAAG 59.520 47.619 0.00 0.0 0.00 3.61 F
3438 3652 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.0 0.00 4.55 F
3439 3653 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.0 0.00 4.18 F
3440 3654 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.0 0.00 3.34 F
3447 3661 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.0 46.18 4.18 F
3453 3667 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.0 46.18 4.16 F
3454 3668 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.0 46.18 3.67 F
4804 5061 2.008242 ACAAAACCTGCCATGGCTTA 57.992 45.000 35.53 17.3 42.51 3.09 F
5801 6490 0.252197 AAGGCCACATCGGGTAGTTC 59.748 55.000 5.01 0.0 34.06 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1845 0.250901 TCAACTCTTGGCTCTTGGGC 60.251 55.000 0.00 0.0 41.27 5.36 R
1766 1852 1.072806 TGCATCACTCAACTCTTGGCT 59.927 47.619 0.00 0.0 0.00 4.75 R
1767 1853 1.198637 GTGCATCACTCAACTCTTGGC 59.801 52.381 0.00 0.0 0.00 4.52 R
3491 3705 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.0 0.00 4.55 R
4268 4500 5.393135 GGCTAAGAAAATACTGAAAGCCACC 60.393 44.000 5.20 0.0 37.60 4.61 R
4827 5084 5.619220 AGAGATGAGATTTACCATGCCTTC 58.381 41.667 0.00 0.0 0.00 3.46 R
5335 6015 5.709631 TGCCAGTGAGTATTGAAGCATAAAA 59.290 36.000 0.00 0.0 0.00 1.52 R
5687 6376 6.249893 CGTTTTGTATGCAATCAATGTCTCTG 59.750 38.462 0.00 0.0 34.18 3.35 R
5703 6392 8.626526 AGGTGTCTCAAATTTTACGTTTTGTAT 58.373 29.630 9.57 0.0 35.01 2.29 R
5719 6408 7.581213 ACAAATACAAAATCAGGTGTCTCAA 57.419 32.000 0.00 0.0 0.00 3.02 R
5870 6570 0.181350 GTAGAATCCAGCCACCCAGG 59.819 60.000 0.00 0.0 41.84 4.45 R
7881 8781 0.037303 CAGAAGAAGGCAAGGGAGCA 59.963 55.000 0.00 0.0 35.83 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.017509 ACAATGTAGTTGATCAACATGAAAGAT 57.982 29.630 33.92 17.11 43.47 2.40
89 90 2.945278 CATGCACCCACAAACATGTAC 58.055 47.619 0.00 0.00 36.11 2.90
204 205 2.991540 GCCAGTGGGAAAGGCCAC 60.992 66.667 12.15 0.00 42.58 5.01
245 246 1.821332 CGCCCATTTCTCCCTGCTC 60.821 63.158 0.00 0.00 0.00 4.26
246 247 1.611965 GCCCATTTCTCCCTGCTCT 59.388 57.895 0.00 0.00 0.00 4.09
247 248 0.465278 GCCCATTTCTCCCTGCTCTC 60.465 60.000 0.00 0.00 0.00 3.20
248 249 1.211456 CCCATTTCTCCCTGCTCTCT 58.789 55.000 0.00 0.00 0.00 3.10
249 250 1.140652 CCCATTTCTCCCTGCTCTCTC 59.859 57.143 0.00 0.00 0.00 3.20
250 251 1.140652 CCATTTCTCCCTGCTCTCTCC 59.859 57.143 0.00 0.00 0.00 3.71
251 252 1.140652 CATTTCTCCCTGCTCTCTCCC 59.859 57.143 0.00 0.00 0.00 4.30
252 253 0.415429 TTTCTCCCTGCTCTCTCCCT 59.585 55.000 0.00 0.00 0.00 4.20
253 254 0.032615 TTCTCCCTGCTCTCTCCCTC 60.033 60.000 0.00 0.00 0.00 4.30
254 255 0.923729 TCTCCCTGCTCTCTCCCTCT 60.924 60.000 0.00 0.00 0.00 3.69
263 264 1.762957 CTCTCTCCCTCTCTCTCTCGT 59.237 57.143 0.00 0.00 0.00 4.18
347 348 2.612251 CCTCCCCTCTCCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
368 369 3.600388 CCTCCTACTGTGTGGATCAAAC 58.400 50.000 0.00 0.00 0.00 2.93
416 420 8.857216 GCAGATTGACAAGTAAATGAATTTCTG 58.143 33.333 0.00 0.00 0.00 3.02
567 581 4.040461 ACCAGGTCACCTATATCATTTCCG 59.960 45.833 0.00 0.00 29.64 4.30
689 736 1.203001 CCAAGTTTCCAACCCCAGCTA 60.203 52.381 0.00 0.00 0.00 3.32
770 820 6.806668 TCTTTTTCTTTTCCTGGATTTGGT 57.193 33.333 0.00 0.00 0.00 3.67
995 1045 3.730761 CTGGTTCACGCTGCTGCC 61.731 66.667 10.24 0.00 35.36 4.85
1140 1190 4.838486 CGCTCGCAGTCCGTCTCC 62.838 72.222 0.00 0.00 38.35 3.71
1574 1624 6.426633 GTGCTTTTAGTGGCATTTTAACCATT 59.573 34.615 0.00 0.00 40.66 3.16
1580 1630 6.047511 AGTGGCATTTTAACCATTTATGCA 57.952 33.333 0.00 0.00 42.48 3.96
1583 1633 6.538021 GTGGCATTTTAACCATTTATGCATGA 59.462 34.615 10.16 0.00 42.48 3.07
1588 1638 8.984764 CATTTTAACCATTTATGCATGAGATGG 58.015 33.333 24.57 24.57 42.28 3.51
1624 1674 9.226606 CTACTTGGTGAAATCTGGTATTTTGTA 57.773 33.333 0.00 0.00 0.00 2.41
1625 1675 7.882179 ACTTGGTGAAATCTGGTATTTTGTAC 58.118 34.615 0.00 0.00 0.00 2.90
1626 1676 7.724061 ACTTGGTGAAATCTGGTATTTTGTACT 59.276 33.333 0.00 0.00 0.00 2.73
1628 1678 8.556213 TGGTGAAATCTGGTATTTTGTACTAC 57.444 34.615 0.00 0.00 0.00 2.73
1629 1679 8.158132 TGGTGAAATCTGGTATTTTGTACTACA 58.842 33.333 0.00 0.00 0.00 2.74
1630 1680 9.005777 GGTGAAATCTGGTATTTTGTACTACAA 57.994 33.333 0.00 0.00 36.11 2.41
1705 1791 4.202212 GCCTGGTTGAACAAATTGGTAACT 60.202 41.667 0.00 0.00 37.61 2.24
1712 1798 8.597227 GGTTGAACAAATTGGTAACTGTAAAAC 58.403 33.333 0.00 0.00 37.61 2.43
1752 1838 2.397549 GCACTTCTGCCATTGTTGTTC 58.602 47.619 0.00 0.00 37.45 3.18
1757 1843 2.665165 TCTGCCATTGTTGTTCCAAGT 58.335 42.857 0.00 0.00 0.00 3.16
1758 1844 3.030291 TCTGCCATTGTTGTTCCAAGTT 58.970 40.909 0.00 0.00 0.00 2.66
1759 1845 3.125316 CTGCCATTGTTGTTCCAAGTTG 58.875 45.455 0.00 0.00 0.00 3.16
1760 1846 1.866601 GCCATTGTTGTTCCAAGTTGC 59.133 47.619 0.00 0.00 0.00 4.17
1761 1847 2.482864 CCATTGTTGTTCCAAGTTGCC 58.517 47.619 0.00 0.00 0.00 4.52
1762 1848 2.482864 CATTGTTGTTCCAAGTTGCCC 58.517 47.619 0.00 0.00 0.00 5.36
1763 1849 1.561643 TTGTTGTTCCAAGTTGCCCA 58.438 45.000 0.00 0.00 0.00 5.36
1764 1850 1.561643 TGTTGTTCCAAGTTGCCCAA 58.438 45.000 0.00 0.00 0.00 4.12
1765 1851 1.480137 TGTTGTTCCAAGTTGCCCAAG 59.520 47.619 0.00 0.00 0.00 3.61
1766 1852 1.754226 GTTGTTCCAAGTTGCCCAAGA 59.246 47.619 0.00 0.00 0.00 3.02
1767 1853 1.691196 TGTTCCAAGTTGCCCAAGAG 58.309 50.000 0.00 0.00 0.00 2.85
1768 1854 0.315251 GTTCCAAGTTGCCCAAGAGC 59.685 55.000 0.00 0.00 0.00 4.09
1820 1906 4.875536 AGTTTTGGGTCTTCATTTTTGTGC 59.124 37.500 0.00 0.00 0.00 4.57
1904 1990 7.039784 ACCTGTGCTAAACAAACATCACATATT 60.040 33.333 0.00 0.00 38.67 1.28
1932 2018 1.281287 AGTCTGCAGTTCTGCATGGAT 59.719 47.619 24.46 10.81 44.47 3.41
1936 2022 3.192001 TCTGCAGTTCTGCATGGATTTTC 59.808 43.478 24.46 0.00 44.47 2.29
2367 2453 4.145876 TGCAGCAACAGTAATCGAAAAG 57.854 40.909 0.00 0.00 0.00 2.27
2491 2705 6.964807 AGTAGAAATATGCATGCCATTGAA 57.035 33.333 16.68 0.00 35.34 2.69
2543 2757 9.586435 AGCATGTTTTCTTAATTATTTGCTACC 57.414 29.630 0.00 0.00 35.15 3.18
2586 2800 5.246307 AGAATAACACAGGCTAACAAGGTC 58.754 41.667 0.00 0.00 0.00 3.85
2664 2878 0.390860 GCAGTGGTGAGAGTCAGTGT 59.609 55.000 0.00 0.00 36.85 3.55
2901 3115 1.673168 GGGAGAATGATGTGCCTGAC 58.327 55.000 0.00 0.00 0.00 3.51
3012 3226 7.042992 GCTGAATACAACCAACCTAACAAAAAC 60.043 37.037 0.00 0.00 0.00 2.43
3431 3645 8.653036 ATTACAACTAGATATGTACTCCCTCC 57.347 38.462 0.00 0.00 32.07 4.30
3432 3646 5.071370 ACAACTAGATATGTACTCCCTCCG 58.929 45.833 0.00 0.00 0.00 4.63
3433 3647 4.997545 ACTAGATATGTACTCCCTCCGT 57.002 45.455 0.00 0.00 0.00 4.69
3434 3648 5.321934 ACTAGATATGTACTCCCTCCGTT 57.678 43.478 0.00 0.00 0.00 4.44
3435 3649 5.315348 ACTAGATATGTACTCCCTCCGTTC 58.685 45.833 0.00 0.00 0.00 3.95
3436 3650 3.498334 AGATATGTACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
3437 3651 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
3438 3652 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
3439 3653 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
3440 3654 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
3441 3655 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
3442 3656 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
3443 3657 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
3444 3658 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
3445 3659 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
3447 3661 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
3448 3662 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
3449 3663 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
3450 3664 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
3451 3665 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
3452 3666 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
3453 3667 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
3454 3668 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
3455 3669 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
3456 3670 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
3457 3671 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
3458 3672 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
3459 3673 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
3460 3674 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
3461 3675 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
3462 3676 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3463 3677 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3464 3678 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3465 3679 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3466 3680 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3467 3681 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3468 3682 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3469 3683 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3470 3684 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3483 3697 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3484 3698 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
3485 3699 7.313646 TCAAATTTGAACTAAAACCACGACAA 58.686 30.769 18.45 0.00 33.55 3.18
3486 3700 7.486551 TCAAATTTGAACTAAAACCACGACAAG 59.513 33.333 18.45 0.00 33.55 3.16
3487 3701 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
3488 3702 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
3489 3703 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
3490 3704 6.981762 TGAACTAAAACCACGACAAGTAAA 57.018 33.333 0.00 0.00 0.00 2.01
3491 3705 7.556733 TGAACTAAAACCACGACAAGTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
3492 3706 7.632721 TGAACTAAAACCACGACAAGTAAATC 58.367 34.615 0.00 0.00 0.00 2.17
3493 3707 6.219302 ACTAAAACCACGACAAGTAAATCG 57.781 37.500 0.00 0.00 43.97 3.34
3494 3708 4.477302 AAAACCACGACAAGTAAATCGG 57.523 40.909 0.00 0.00 42.67 4.18
3495 3709 3.389925 AACCACGACAAGTAAATCGGA 57.610 42.857 0.00 0.00 42.67 4.55
3496 3710 3.389925 ACCACGACAAGTAAATCGGAA 57.610 42.857 0.00 0.00 42.67 4.30
3497 3711 3.062042 ACCACGACAAGTAAATCGGAAC 58.938 45.455 0.00 0.00 42.67 3.62
3583 3797 5.675684 AATTTTATTACAAGTGGGGCCAG 57.324 39.130 4.39 0.00 0.00 4.85
3584 3798 3.818295 TTTATTACAAGTGGGGCCAGT 57.182 42.857 4.39 0.00 0.00 4.00
3651 3865 4.095036 GCTTTCACATGGGTAGCTTAAGTC 59.905 45.833 14.78 0.00 0.00 3.01
3663 3877 6.403746 GGGTAGCTTAAGTCTGCTTTCAAATC 60.404 42.308 4.02 0.00 40.35 2.17
3725 3939 8.057742 GCTATTTTGGTTTGATATGAATTTGCG 58.942 33.333 0.00 0.00 0.00 4.85
3731 3945 5.682862 GGTTTGATATGAATTTGCGCTACTG 59.317 40.000 9.73 0.00 0.00 2.74
3775 3991 4.633565 GGACCTGAACATTTAGAGAGCTTG 59.366 45.833 0.00 0.00 0.00 4.01
3788 4019 3.006247 GAGAGCTTGGACCATCAAGAAC 58.994 50.000 8.56 2.26 44.98 3.01
3791 4022 3.823304 GAGCTTGGACCATCAAGAACTTT 59.177 43.478 8.56 0.00 44.98 2.66
3795 4026 3.754965 TGGACCATCAAGAACTTTCCTG 58.245 45.455 0.00 0.00 0.00 3.86
3820 4051 5.327091 CATTTATGCTCAAACACTTCTCCG 58.673 41.667 0.00 0.00 0.00 4.63
3865 4096 9.030452 TGAATTTAGTTGCTATATTGGGTTTGT 57.970 29.630 0.00 0.00 0.00 2.83
3905 4136 4.035441 ACAAGCATGCCAAAAATGTTGAAC 59.965 37.500 15.66 0.00 0.00 3.18
3918 4149 3.755112 TGTTGAACGGACAATGGAGTA 57.245 42.857 0.00 0.00 32.36 2.59
4097 4328 9.495572 TTTGGTTGTTAGTTTCATCTTTTTGTT 57.504 25.926 0.00 0.00 0.00 2.83
4161 4392 3.323979 GGCAGGAATATTCGGAGGAAGTA 59.676 47.826 9.32 0.00 35.19 2.24
4230 4462 8.853077 ACTTCTGTTAGTTGATTCATGAATGA 57.147 30.769 25.37 14.86 34.44 2.57
4268 4500 5.021033 ACAATGTCTCTCTAATCAGCAGG 57.979 43.478 0.00 0.00 0.00 4.85
4340 4579 5.192927 TGTTCTATTGATACTTTGGGCCTG 58.807 41.667 4.53 0.00 0.00 4.85
4414 4660 2.553172 CCATGGTTGCCAAACATTTTGG 59.447 45.455 4.94 12.53 42.37 3.28
4421 4667 3.265791 TGCCAAACATTTTGGTGTGAAC 58.734 40.909 17.01 2.61 41.53 3.18
4529 4778 8.420374 TCAGGTCTCGTGATATCATTTTAAAC 57.580 34.615 9.02 3.48 0.00 2.01
4804 5061 2.008242 ACAAAACCTGCCATGGCTTA 57.992 45.000 35.53 17.30 42.51 3.09
4820 5077 8.296000 GCCATGGCTTAATTTTTACAAAAACAT 58.704 29.630 29.98 0.00 38.13 2.71
5042 5706 6.728632 ACACCTCCTTTCTCTAGATTTCTCTT 59.271 38.462 0.00 0.00 32.66 2.85
5078 5756 8.429237 AAAGACCCAACATGTTCCATATTTTA 57.571 30.769 8.48 0.00 0.00 1.52
5184 5863 6.947464 TCCTAGCTAACAGAAGTTATTTGCT 58.053 36.000 0.00 7.65 40.34 3.91
5188 5867 5.770162 AGCTAACAGAAGTTATTTGCTGGTT 59.230 36.000 0.00 0.00 37.65 3.67
5206 5885 8.492673 TGCTGGTTTTAACTAGATTAGACATG 57.507 34.615 9.80 0.00 39.59 3.21
5290 5969 4.337274 GCCATACCGTTTATTAGGCTGTTT 59.663 41.667 0.00 0.00 37.67 2.83
5413 6097 6.963083 ACAGAATATGACTACTACCCTGAC 57.037 41.667 0.00 0.00 0.00 3.51
5419 6103 9.298250 GAATATGACTACTACCCTGACTTCATA 57.702 37.037 0.00 0.00 0.00 2.15
5687 6376 7.945134 AGAATTATTCTTGGATTGTGGTATGC 58.055 34.615 0.99 0.00 36.36 3.14
5756 6445 3.397482 TGTATTTGTTGCAAATGGGCAC 58.603 40.909 14.99 7.50 44.86 5.01
5801 6490 0.252197 AAGGCCACATCGGGTAGTTC 59.748 55.000 5.01 0.00 34.06 3.01
5908 6608 9.922305 GATTCTACCTGAAGTTTCGAATTATTG 57.078 33.333 0.00 0.00 38.18 1.90
6164 6867 8.362639 ACATTACAATCATTTGCTCTTCAAACT 58.637 29.630 0.00 0.00 46.36 2.66
6200 6903 6.286758 TCCTACTTGCATCTCATTTCATCTC 58.713 40.000 0.00 0.00 0.00 2.75
6255 6958 4.030753 CGTCTCAAGCGTGAAACTTATCTC 59.969 45.833 3.39 0.00 31.88 2.75
6290 6993 5.178809 CAGGAAAAGGAACGGTAAGTACAAG 59.821 44.000 0.00 0.00 0.00 3.16
6291 6994 4.083643 GGAAAAGGAACGGTAAGTACAAGC 60.084 45.833 0.00 0.00 0.00 4.01
6296 6999 5.067954 AGGAACGGTAAGTACAAGCAAAAT 58.932 37.500 0.00 0.00 0.00 1.82
6348 7091 9.546428 CATGGATCTTTTGTTTTCCTAACTTTT 57.454 29.630 0.00 0.00 0.00 2.27
6438 7181 8.031864 AGATGAGAAGTAAGTACATGACAGTTG 58.968 37.037 0.00 0.00 0.00 3.16
6600 7345 8.632679 GGAAAATCTCAATTCAATGCAGGTATA 58.367 33.333 0.00 0.00 0.00 1.47
6677 7424 5.648178 TGGTTCAGATTGTGATGATTTGG 57.352 39.130 0.00 0.00 34.17 3.28
6686 7433 6.718454 AGATTGTGATGATTTGGACTTCAAGT 59.282 34.615 0.00 0.00 36.62 3.16
6708 7531 4.500499 AATATTTGTCTCAGCAGCTCCT 57.500 40.909 0.00 0.00 0.00 3.69
6726 7556 7.209475 CAGCTCCTCAAAAAGTTAAATTCCAA 58.791 34.615 0.00 0.00 0.00 3.53
6767 7597 2.380084 TTGGTTACAGCGCTTCCTAG 57.620 50.000 7.50 0.00 0.00 3.02
6819 7667 9.850198 TTGACATATGAATATTCAGTTGATGGA 57.150 29.630 25.63 14.36 41.08 3.41
6848 7700 8.067784 TCTAAATTTGTCCGATTAATTGCGATC 58.932 33.333 0.00 0.00 0.00 3.69
6990 7843 3.900966 TCTGTGCTCAGTATTGCAGAT 57.099 42.857 15.01 0.00 41.91 2.90
6993 7846 5.733676 TCTGTGCTCAGTATTGCAGATTAA 58.266 37.500 15.01 0.00 41.91 1.40
6998 7851 6.744537 GTGCTCAGTATTGCAGATTAAAACTG 59.255 38.462 8.16 8.16 40.06 3.16
7208 8062 7.348080 TCCTTACTGGACATCACTTATACTG 57.652 40.000 0.00 0.00 40.56 2.74
7246 8100 2.609747 TGTACTATCTCTGCCATCCCC 58.390 52.381 0.00 0.00 0.00 4.81
7247 8101 1.903183 GTACTATCTCTGCCATCCCCC 59.097 57.143 0.00 0.00 0.00 5.40
7446 8300 2.158842 AGTATGCTGTCCAGAATCAGGC 60.159 50.000 0.00 0.00 32.94 4.85
7513 8368 2.238521 TGAAGATTCCAACAACCTGCC 58.761 47.619 0.00 0.00 0.00 4.85
7526 8381 2.281761 CTGCCAAGGCGGTGAGTT 60.282 61.111 11.80 0.00 45.51 3.01
7547 8402 0.179097 GCGAGTGAGGAGGGAACATC 60.179 60.000 0.00 0.00 0.00 3.06
7563 8422 0.528466 CATCGTCGGTGATGGAGTGG 60.528 60.000 0.00 0.00 41.63 4.00
7595 8454 2.115343 AGAAAAGATTCGTGCCTCCC 57.885 50.000 0.00 0.00 40.63 4.30
7642 8501 2.089201 TGCTGAAGATTGTGCAGATGG 58.911 47.619 0.00 0.00 0.00 3.51
7646 8505 2.575735 TGAAGATTGTGCAGATGGGGTA 59.424 45.455 0.00 0.00 0.00 3.69
7686 8578 4.467795 TCTGGCAGCAAAGATTAGAGTAGT 59.532 41.667 10.34 0.00 0.00 2.73
7736 8628 0.809636 CTACATTCCGTGGCGATGCA 60.810 55.000 0.00 0.00 0.00 3.96
7748 8640 0.999406 GCGATGCATGACTAACACGT 59.001 50.000 2.46 0.00 0.00 4.49
7834 8733 5.633601 TCTGATGACAAATTGTACACGAGTC 59.366 40.000 0.00 2.59 0.00 3.36
7871 8771 8.553459 AGAACCTTGTAAGATTCATACTTGTG 57.447 34.615 1.83 0.00 0.00 3.33
7903 8803 0.773644 TCCCTTGCCTTCTTCTGCTT 59.226 50.000 0.00 0.00 0.00 3.91
7909 8809 4.262335 CCTTGCCTTCTTCTGCTTTTCAAT 60.262 41.667 0.00 0.00 0.00 2.57
7912 8812 5.291971 TGCCTTCTTCTGCTTTTCAATTTC 58.708 37.500 0.00 0.00 0.00 2.17
7913 8813 4.687948 GCCTTCTTCTGCTTTTCAATTTCC 59.312 41.667 0.00 0.00 0.00 3.13
7929 8830 2.302587 TTCCTTTTGGCGGGAATTCT 57.697 45.000 5.23 0.00 36.78 2.40
7958 8859 1.666888 GCACAAATCAACCGAAGCTGG 60.667 52.381 0.00 0.00 0.00 4.85
7965 8866 1.148310 CAACCGAAGCTGGTACTGTG 58.852 55.000 0.00 0.00 42.89 3.66
7966 8867 0.602905 AACCGAAGCTGGTACTGTGC 60.603 55.000 0.00 0.00 42.89 4.57
7967 8868 1.293498 CCGAAGCTGGTACTGTGCT 59.707 57.895 0.00 0.00 38.87 4.40
8032 8933 5.165961 ACTTGGCTATTTTGTCTGCTCTA 57.834 39.130 0.00 0.00 0.00 2.43
8034 8935 4.551702 TGGCTATTTTGTCTGCTCTACA 57.448 40.909 0.00 0.00 0.00 2.74
8037 8938 5.945784 TGGCTATTTTGTCTGCTCTACAATT 59.054 36.000 0.00 0.00 36.75 2.32
8038 8939 6.434028 TGGCTATTTTGTCTGCTCTACAATTT 59.566 34.615 0.00 0.00 36.75 1.82
8039 8940 7.609918 TGGCTATTTTGTCTGCTCTACAATTTA 59.390 33.333 0.00 0.00 36.75 1.40
8040 8941 8.624776 GGCTATTTTGTCTGCTCTACAATTTAT 58.375 33.333 0.00 0.00 36.75 1.40
8044 8945 7.899178 TTTGTCTGCTCTACAATTTATTCGA 57.101 32.000 0.00 0.00 36.75 3.71
8045 8946 7.525688 TTGTCTGCTCTACAATTTATTCGAG 57.474 36.000 0.00 0.00 32.07 4.04
8046 8947 5.520288 TGTCTGCTCTACAATTTATTCGAGC 59.480 40.000 0.00 0.00 42.97 5.03
8048 8949 5.973651 TGCTCTACAATTTATTCGAGCAG 57.026 39.130 7.59 0.00 46.05 4.24
8049 8950 5.419542 TGCTCTACAATTTATTCGAGCAGT 58.580 37.500 7.59 0.00 46.05 4.40
8050 8951 5.291858 TGCTCTACAATTTATTCGAGCAGTG 59.708 40.000 7.59 0.00 46.05 3.66
8051 8952 5.718649 TCTACAATTTATTCGAGCAGTGC 57.281 39.130 7.13 7.13 0.00 4.40
8052 8953 3.764885 ACAATTTATTCGAGCAGTGCC 57.235 42.857 12.58 2.23 0.00 5.01
8053 8954 3.347216 ACAATTTATTCGAGCAGTGCCT 58.653 40.909 12.58 0.00 0.00 4.75
8054 8955 3.375299 ACAATTTATTCGAGCAGTGCCTC 59.625 43.478 12.58 7.95 0.00 4.70
8055 8956 3.550437 ATTTATTCGAGCAGTGCCTCT 57.450 42.857 12.58 0.00 0.00 3.69
8056 8957 2.299993 TTATTCGAGCAGTGCCTCTG 57.700 50.000 12.58 0.00 46.12 3.35
8063 8964 4.613929 CAGTGCCTCTGCTCTTCC 57.386 61.111 0.00 0.00 39.21 3.46
8064 8965 1.675801 CAGTGCCTCTGCTCTTCCA 59.324 57.895 0.00 0.00 39.21 3.53
8065 8966 0.035881 CAGTGCCTCTGCTCTTCCAA 59.964 55.000 0.00 0.00 39.21 3.53
8066 8967 0.990374 AGTGCCTCTGCTCTTCCAAT 59.010 50.000 0.00 0.00 38.09 3.16
8067 8968 1.353694 AGTGCCTCTGCTCTTCCAATT 59.646 47.619 0.00 0.00 38.09 2.32
8068 8969 2.165998 GTGCCTCTGCTCTTCCAATTT 58.834 47.619 0.00 0.00 38.71 1.82
8069 8970 3.009473 AGTGCCTCTGCTCTTCCAATTTA 59.991 43.478 0.00 0.00 38.09 1.40
8070 8971 3.376546 GTGCCTCTGCTCTTCCAATTTAG 59.623 47.826 0.00 0.00 38.71 1.85
8076 8977 6.351371 CCTCTGCTCTTCCAATTTAGTACTCA 60.351 42.308 0.00 0.00 0.00 3.41
8080 8981 5.813157 GCTCTTCCAATTTAGTACTCACTCC 59.187 44.000 0.00 0.00 36.14 3.85
8083 8984 5.320549 TCCAATTTAGTACTCACTCCGTC 57.679 43.478 0.00 0.00 36.14 4.79
8084 8985 4.159135 TCCAATTTAGTACTCACTCCGTCC 59.841 45.833 0.00 0.00 36.14 4.79
8085 8986 4.430908 CAATTTAGTACTCACTCCGTCCC 58.569 47.826 0.00 0.00 36.14 4.46
8086 8987 2.885135 TTAGTACTCACTCCGTCCCA 57.115 50.000 0.00 0.00 36.14 4.37
8087 8988 3.377253 TTAGTACTCACTCCGTCCCAT 57.623 47.619 0.00 0.00 36.14 4.00
8099 9000 6.380274 TCACTCCGTCCCATAATATAAGATCC 59.620 42.308 0.00 0.00 0.00 3.36
8100 9001 5.661759 ACTCCGTCCCATAATATAAGATCCC 59.338 44.000 0.00 0.00 0.00 3.85
8101 9002 4.966805 TCCGTCCCATAATATAAGATCCCC 59.033 45.833 0.00 0.00 0.00 4.81
8102 9003 4.719773 CCGTCCCATAATATAAGATCCCCA 59.280 45.833 0.00 0.00 0.00 4.96
8103 9004 5.369699 CCGTCCCATAATATAAGATCCCCAT 59.630 44.000 0.00 0.00 0.00 4.00
8104 9005 6.557253 CCGTCCCATAATATAAGATCCCCATA 59.443 42.308 0.00 0.00 0.00 2.74
8119 9020 9.892130 AAGATCCCCATAATATAAGATCGTTTC 57.108 33.333 0.00 0.00 36.19 2.78
8120 9021 8.487028 AGATCCCCATAATATAAGATCGTTTCC 58.513 37.037 0.00 0.00 36.19 3.13
8121 9022 7.562259 TCCCCATAATATAAGATCGTTTCCA 57.438 36.000 0.00 0.00 0.00 3.53
8122 9023 7.980032 TCCCCATAATATAAGATCGTTTCCAA 58.020 34.615 0.00 0.00 0.00 3.53
8123 9024 8.100791 TCCCCATAATATAAGATCGTTTCCAAG 58.899 37.037 0.00 0.00 0.00 3.61
8124 9025 7.148239 CCCCATAATATAAGATCGTTTCCAAGC 60.148 40.741 0.00 0.00 0.00 4.01
8125 9026 7.607991 CCCATAATATAAGATCGTTTCCAAGCT 59.392 37.037 0.00 0.00 0.00 3.74
8126 9027 9.653287 CCATAATATAAGATCGTTTCCAAGCTA 57.347 33.333 0.00 0.00 0.00 3.32
8131 9032 7.681939 ATAAGATCGTTTCCAAGCTAAAACA 57.318 32.000 15.46 6.85 35.57 2.83
8132 9033 5.358298 AGATCGTTTCCAAGCTAAAACAC 57.642 39.130 15.46 8.73 35.57 3.32
8140 9041 3.137544 TCCAAGCTAAAACACAGAGGGAA 59.862 43.478 0.00 0.00 0.00 3.97
8143 9044 5.888161 CCAAGCTAAAACACAGAGGGAATAT 59.112 40.000 0.00 0.00 0.00 1.28
8147 9048 6.378280 AGCTAAAACACAGAGGGAATATTTGG 59.622 38.462 0.00 0.00 0.00 3.28
8152 9053 4.137543 CACAGAGGGAATATTTGGGTAGC 58.862 47.826 0.00 0.00 0.00 3.58
8154 9100 4.416848 ACAGAGGGAATATTTGGGTAGCAT 59.583 41.667 0.00 0.00 0.00 3.79
8157 9103 5.134339 AGAGGGAATATTTGGGTAGCATGAA 59.866 40.000 0.00 0.00 0.00 2.57
8160 9106 5.185828 GGGAATATTTGGGTAGCATGAATCC 59.814 44.000 0.00 0.00 0.00 3.01
8161 9107 5.185828 GGAATATTTGGGTAGCATGAATCCC 59.814 44.000 0.00 4.68 40.26 3.85
8167 9113 1.133976 GGTAGCATGAATCCCAGCAGT 60.134 52.381 0.00 0.00 0.00 4.40
8178 9124 1.344953 CCCAGCAGTAGTATGGGCCA 61.345 60.000 9.61 9.61 46.86 5.36
8187 9133 0.919710 AGTATGGGCCAACTTCCCTC 59.080 55.000 11.89 0.00 44.23 4.30
8197 9143 1.135141 CAACTTCCCTCGAGCTCTCTG 60.135 57.143 12.85 1.36 0.00 3.35
8204 9150 1.134175 CCTCGAGCTCTCTGTTTCTCC 59.866 57.143 12.85 0.00 0.00 3.71
8205 9151 1.815613 CTCGAGCTCTCTGTTTCTCCA 59.184 52.381 12.85 0.00 0.00 3.86
8222 9168 3.494336 AGCTGCTGCGCGTCATTC 61.494 61.111 8.43 2.35 45.42 2.67
8238 9184 0.411058 ATTCCCTCAGCTTGCCCTTT 59.589 50.000 0.00 0.00 0.00 3.11
8239 9185 0.188342 TTCCCTCAGCTTGCCCTTTT 59.812 50.000 0.00 0.00 0.00 2.27
8241 9187 0.540365 CCCTCAGCTTGCCCTTTTCA 60.540 55.000 0.00 0.00 0.00 2.69
8243 9189 1.475682 CCTCAGCTTGCCCTTTTCATC 59.524 52.381 0.00 0.00 0.00 2.92
8247 9193 3.256631 TCAGCTTGCCCTTTTCATCTTTC 59.743 43.478 0.00 0.00 0.00 2.62
8255 9201 0.239879 TTTTCATCTTTCGCCACCGC 59.760 50.000 0.00 0.00 0.00 5.68
8256 9202 1.582610 TTTCATCTTTCGCCACCGCC 61.583 55.000 0.00 0.00 0.00 6.13
8257 9203 3.864686 CATCTTTCGCCACCGCCG 61.865 66.667 0.00 0.00 0.00 6.46
8270 9216 4.368808 CGCCGGTCTGCAACGTTG 62.369 66.667 23.90 23.90 0.00 4.10
8271 9217 4.025401 GCCGGTCTGCAACGTTGG 62.025 66.667 28.33 13.76 0.00 3.77
8272 9218 2.280524 CCGGTCTGCAACGTTGGA 60.281 61.111 28.33 25.08 0.00 3.53
8273 9219 2.317609 CCGGTCTGCAACGTTGGAG 61.318 63.158 35.69 35.69 46.51 3.86
8274 9220 2.946762 GGTCTGCAACGTTGGAGC 59.053 61.111 36.33 30.02 45.01 4.70
8275 9221 1.598130 GGTCTGCAACGTTGGAGCT 60.598 57.895 36.33 0.00 45.01 4.09
8276 9222 1.571460 GTCTGCAACGTTGGAGCTG 59.429 57.895 36.33 22.61 45.01 4.24
8277 9223 1.146041 TCTGCAACGTTGGAGCTGT 59.854 52.632 36.33 0.00 45.01 4.40
8278 9224 0.880278 TCTGCAACGTTGGAGCTGTC 60.880 55.000 36.33 16.87 45.01 3.51
8279 9225 1.153269 TGCAACGTTGGAGCTGTCA 60.153 52.632 28.33 13.63 0.00 3.58
8280 9226 0.746204 TGCAACGTTGGAGCTGTCAA 60.746 50.000 28.33 0.00 0.00 3.18
8281 9227 0.040958 GCAACGTTGGAGCTGTCAAG 60.041 55.000 28.33 0.00 0.00 3.02
8282 9228 1.299541 CAACGTTGGAGCTGTCAAGT 58.700 50.000 20.71 0.00 0.00 3.16
8283 9229 2.479837 CAACGTTGGAGCTGTCAAGTA 58.520 47.619 20.71 0.00 0.00 2.24
8284 9230 2.440539 ACGTTGGAGCTGTCAAGTAG 57.559 50.000 0.00 0.00 0.00 2.57
8285 9231 1.961394 ACGTTGGAGCTGTCAAGTAGA 59.039 47.619 0.00 0.00 0.00 2.59
8286 9232 2.029828 ACGTTGGAGCTGTCAAGTAGAG 60.030 50.000 0.00 0.00 0.00 2.43
8287 9233 2.342179 GTTGGAGCTGTCAAGTAGAGC 58.658 52.381 0.00 0.00 44.80 4.09
8320 9266 4.147322 CGGTCATCGTGCGGTTGC 62.147 66.667 0.00 0.00 43.20 4.17
8330 9276 3.423154 GCGGTTGCCCTGTCTTCG 61.423 66.667 0.00 0.00 33.98 3.79
8340 9286 1.477295 CCCTGTCTTCGTTCTAGGGTC 59.523 57.143 0.00 0.00 42.52 4.46
8341 9287 1.132643 CCTGTCTTCGTTCTAGGGTCG 59.867 57.143 0.00 0.00 0.00 4.79
8343 9289 2.683867 CTGTCTTCGTTCTAGGGTCGAT 59.316 50.000 0.00 0.00 33.72 3.59
8346 9292 4.701651 TGTCTTCGTTCTAGGGTCGATAAA 59.298 41.667 0.00 0.00 33.72 1.40
8375 9533 1.372499 CGACGTCCTTCGAGCCAAA 60.372 57.895 10.58 0.00 41.78 3.28
8377 9535 1.439679 GACGTCCTTCGAGCCAAAAT 58.560 50.000 3.51 0.00 42.86 1.82
8380 9538 1.804151 CGTCCTTCGAGCCAAAATGAA 59.196 47.619 0.00 0.00 42.86 2.57
8381 9539 2.225491 CGTCCTTCGAGCCAAAATGAAA 59.775 45.455 0.00 0.00 42.86 2.69
8383 9541 2.819608 TCCTTCGAGCCAAAATGAAAGG 59.180 45.455 0.00 0.00 0.00 3.11
8429 9587 1.011333 GGTGTGTGTGCGTTGTACTT 58.989 50.000 0.00 0.00 0.00 2.24
8432 9590 1.011333 GTGTGTGCGTTGTACTTGGT 58.989 50.000 0.00 0.00 0.00 3.67
8433 9591 1.004292 GTGTGTGCGTTGTACTTGGTC 60.004 52.381 0.00 0.00 0.00 4.02
8434 9592 0.584876 GTGTGCGTTGTACTTGGTCC 59.415 55.000 0.00 0.00 0.00 4.46
8435 9593 0.533308 TGTGCGTTGTACTTGGTCCC 60.533 55.000 0.00 0.00 0.00 4.46
8436 9594 1.071814 TGCGTTGTACTTGGTCCCC 59.928 57.895 0.00 0.00 0.00 4.81
8437 9595 1.071814 GCGTTGTACTTGGTCCCCA 59.928 57.895 0.00 0.00 0.00 4.96
8438 9596 0.322187 GCGTTGTACTTGGTCCCCAT 60.322 55.000 0.00 0.00 31.53 4.00
8439 9597 1.065998 GCGTTGTACTTGGTCCCCATA 60.066 52.381 0.00 0.00 31.53 2.74
8440 9598 2.616001 GCGTTGTACTTGGTCCCCATAA 60.616 50.000 0.00 0.00 31.53 1.90
8452 9610 1.752694 CCCATAACCCCGTTGCAGG 60.753 63.158 0.00 0.00 0.00 4.85
8471 9629 0.042967 GCGATGGCGAGATCGTTTTC 60.043 55.000 15.29 0.00 45.73 2.29
8474 9632 2.093625 CGATGGCGAGATCGTTTTCAAA 59.906 45.455 3.94 0.00 40.32 2.69
8483 9641 1.674359 TCGTTTTCAAAGGCAGCTGA 58.326 45.000 20.43 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.509141 TCATGTTGATCAACTACATTGTTGT 57.491 32.000 32.57 0.00 45.26 3.32
63 64 2.166829 GTTTGTGGGTGCATGTGGATA 58.833 47.619 0.00 0.00 0.00 2.59
204 205 6.035843 CGAATTGGTTGGTCCATTTTATCAG 58.964 40.000 0.00 0.00 46.60 2.90
245 246 1.484653 TGACGAGAGAGAGAGGGAGAG 59.515 57.143 0.00 0.00 0.00 3.20
246 247 1.484653 CTGACGAGAGAGAGAGGGAGA 59.515 57.143 0.00 0.00 0.00 3.71
247 248 1.484653 TCTGACGAGAGAGAGAGGGAG 59.515 57.143 0.00 0.00 0.00 4.30
248 249 1.574263 TCTGACGAGAGAGAGAGGGA 58.426 55.000 0.00 0.00 0.00 4.20
249 250 2.158827 TCATCTGACGAGAGAGAGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
250 251 2.872245 GTCATCTGACGAGAGAGAGAGG 59.128 54.545 0.00 0.00 35.12 3.69
263 264 0.320683 CAACCTGTGGCGTCATCTGA 60.321 55.000 0.00 0.00 0.00 3.27
331 332 2.018086 AGGGGAGAGGAGAGGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
332 333 2.015726 GAGGGGAGAGGAGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
333 334 2.612251 GAGGGGAGAGGAGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
334 335 0.703056 TAGGAGGGGAGAGGAGAGGG 60.703 65.000 0.00 0.00 0.00 4.30
335 336 0.481128 GTAGGAGGGGAGAGGAGAGG 59.519 65.000 0.00 0.00 0.00 3.69
336 337 1.144913 CAGTAGGAGGGGAGAGGAGAG 59.855 61.905 0.00 0.00 0.00 3.20
339 340 0.631753 CACAGTAGGAGGGGAGAGGA 59.368 60.000 0.00 0.00 0.00 3.71
347 348 3.600388 GTTTGATCCACACAGTAGGAGG 58.400 50.000 0.00 0.00 37.34 4.30
508 512 4.776322 CGATTGGTCAGCCGGGCA 62.776 66.667 23.09 0.00 37.67 5.36
567 581 3.653122 TACAAGGGGGAGGGAGGGC 62.653 68.421 0.00 0.00 0.00 5.19
579 597 3.626028 AAAAGAAGCAAGCGTACAAGG 57.374 42.857 0.00 0.00 0.00 3.61
689 736 1.882623 GGAGCAAACAAGTAGCAGCTT 59.117 47.619 0.00 0.00 31.61 3.74
774 824 0.535335 CGAGATTTCCCGGACAGGAA 59.465 55.000 0.73 0.00 44.30 3.36
776 826 4.835927 CGAGATTTCCCGGACAGG 57.164 61.111 0.73 0.00 40.63 4.00
1574 1624 4.508551 AGTTCCACCATCTCATGCATAA 57.491 40.909 0.00 0.00 0.00 1.90
1580 1630 6.352222 CCAAGTAGTAAGTTCCACCATCTCAT 60.352 42.308 0.00 0.00 0.00 2.90
1583 1633 4.844655 ACCAAGTAGTAAGTTCCACCATCT 59.155 41.667 0.00 0.00 0.00 2.90
1588 1638 6.935208 AGATTTCACCAAGTAGTAAGTTCCAC 59.065 38.462 0.00 0.00 0.00 4.02
1624 1674 3.955650 AGCATGGACGTAACTTGTAGT 57.044 42.857 0.00 0.00 0.00 2.73
1625 1675 5.348986 ACATAGCATGGACGTAACTTGTAG 58.651 41.667 0.00 0.00 33.60 2.74
1626 1676 5.105675 TGACATAGCATGGACGTAACTTGTA 60.106 40.000 0.00 0.00 33.60 2.41
1628 1678 4.032900 GTGACATAGCATGGACGTAACTTG 59.967 45.833 0.00 0.00 33.60 3.16
1629 1679 4.181578 GTGACATAGCATGGACGTAACTT 58.818 43.478 0.00 0.00 33.60 2.66
1630 1680 3.194755 TGTGACATAGCATGGACGTAACT 59.805 43.478 0.00 0.00 33.60 2.24
1631 1681 3.517602 TGTGACATAGCATGGACGTAAC 58.482 45.455 0.00 0.00 33.60 2.50
1633 1683 2.758423 ACTGTGACATAGCATGGACGTA 59.242 45.455 0.00 0.00 33.60 3.57
1634 1684 1.550524 ACTGTGACATAGCATGGACGT 59.449 47.619 0.00 0.00 33.60 4.34
1705 1791 9.307121 CATGAAACCTTATTGTGTTGTTTTACA 57.693 29.630 0.00 0.00 29.89 2.41
1712 1798 4.685628 GTGCCATGAAACCTTATTGTGTTG 59.314 41.667 0.00 0.00 0.00 3.33
1752 1838 3.369921 GGCTCTTGGGCAACTTGG 58.630 61.111 0.00 0.00 40.53 3.61
1759 1845 0.250901 TCAACTCTTGGCTCTTGGGC 60.251 55.000 0.00 0.00 41.27 5.36
1760 1846 1.072965 ACTCAACTCTTGGCTCTTGGG 59.927 52.381 0.00 0.00 0.00 4.12
1761 1847 2.149578 CACTCAACTCTTGGCTCTTGG 58.850 52.381 0.00 0.00 0.00 3.61
1762 1848 3.117491 TCACTCAACTCTTGGCTCTTG 57.883 47.619 0.00 0.00 0.00 3.02
1763 1849 3.672808 CATCACTCAACTCTTGGCTCTT 58.327 45.455 0.00 0.00 0.00 2.85
1764 1850 2.614987 GCATCACTCAACTCTTGGCTCT 60.615 50.000 0.00 0.00 0.00 4.09
1765 1851 1.736681 GCATCACTCAACTCTTGGCTC 59.263 52.381 0.00 0.00 0.00 4.70
1766 1852 1.072806 TGCATCACTCAACTCTTGGCT 59.927 47.619 0.00 0.00 0.00 4.75
1767 1853 1.198637 GTGCATCACTCAACTCTTGGC 59.801 52.381 0.00 0.00 0.00 4.52
1768 1854 2.497138 TGTGCATCACTCAACTCTTGG 58.503 47.619 0.00 0.00 35.11 3.61
1820 1906 1.477105 TCGATAAGCAATGCGACTCG 58.523 50.000 16.13 16.13 0.00 4.18
1932 2018 5.949735 ACAAGAACAAAAGAGAAGCGAAAA 58.050 33.333 0.00 0.00 0.00 2.29
1936 2022 6.129352 GCATTAACAAGAACAAAAGAGAAGCG 60.129 38.462 0.00 0.00 0.00 4.68
2367 2453 4.051237 GGATTTCTGTTCAACAAACTGGC 58.949 43.478 0.00 0.00 38.76 4.85
2586 2800 4.212636 ACCCTCGAACGAACTTTATTTGTG 59.787 41.667 0.00 0.00 0.00 3.33
2664 2878 5.046591 ACCTTCCTTGTTATCACGATCAGAA 60.047 40.000 0.00 0.00 0.00 3.02
2901 3115 2.486472 AGGTCACCTGATTTCTGCAG 57.514 50.000 7.63 7.63 29.57 4.41
2928 3142 4.201891 CCATTCTCTTGCTCACTATGCAAC 60.202 45.833 0.00 0.00 44.24 4.17
3012 3226 1.153289 CCAGGAACCTGATGCCTCG 60.153 63.158 20.79 0.17 46.30 4.63
3244 3458 4.693566 CCGCTGGTAGAAACTATGAAACAA 59.306 41.667 0.00 0.00 0.00 2.83
3437 3651 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
3438 3652 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
3439 3653 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
3440 3654 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3441 3655 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3442 3656 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3443 3657 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3444 3658 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3445 3659 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3446 3660 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3459 3673 7.313646 TGTCGTGGTTTTAGTTCAAATTTGAA 58.686 30.769 26.01 26.01 44.31 2.69
3460 3674 6.853720 TGTCGTGGTTTTAGTTCAAATTTGA 58.146 32.000 16.91 16.91 34.92 2.69
3461 3675 7.274686 ACTTGTCGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
3462 3676 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
3463 3677 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
3464 3678 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
3465 3679 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
3466 3680 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
3467 3681 6.981762 TTTACTTGTCGTGGTTTTAGTTCA 57.018 33.333 0.00 0.00 0.00 3.18
3468 3682 6.788930 CGATTTACTTGTCGTGGTTTTAGTTC 59.211 38.462 0.00 0.00 33.42 3.01
3469 3683 6.293027 CCGATTTACTTGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 36.17 2.24
3470 3684 5.178067 CCGATTTACTTGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 36.17 2.24
3471 3685 5.406175 TCCGATTTACTTGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 36.17 1.85
3472 3686 5.295950 TCCGATTTACTTGTCGTGGTTTTA 58.704 37.500 0.00 0.00 36.17 1.52
3473 3687 4.128643 TCCGATTTACTTGTCGTGGTTTT 58.871 39.130 0.00 0.00 36.17 2.43
3474 3688 3.731089 TCCGATTTACTTGTCGTGGTTT 58.269 40.909 0.00 0.00 36.17 3.27
3475 3689 3.389925 TCCGATTTACTTGTCGTGGTT 57.610 42.857 0.00 0.00 36.17 3.67
3476 3690 3.062042 GTTCCGATTTACTTGTCGTGGT 58.938 45.455 0.00 0.00 36.17 4.16
3477 3691 2.091588 CGTTCCGATTTACTTGTCGTGG 59.908 50.000 0.00 0.00 36.17 4.94
3478 3692 2.091588 CCGTTCCGATTTACTTGTCGTG 59.908 50.000 0.00 0.00 36.17 4.35
3479 3693 2.030007 TCCGTTCCGATTTACTTGTCGT 60.030 45.455 0.00 0.00 36.17 4.34
3480 3694 2.597305 CTCCGTTCCGATTTACTTGTCG 59.403 50.000 0.00 0.00 37.58 4.35
3481 3695 2.928116 CCTCCGTTCCGATTTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3482 3696 2.354403 CCCTCCGTTCCGATTTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3483 3697 2.093869 TCCCTCCGTTCCGATTTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3484 3698 2.167900 CTCCCTCCGTTCCGATTTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3485 3699 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
3486 3700 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
3487 3701 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
3488 3702 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
3489 3703 1.341778 ACTACTCCCTCCGTTCCGATT 60.342 52.381 0.00 0.00 0.00 3.34
3490 3704 0.258194 ACTACTCCCTCCGTTCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
3491 3705 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
3492 3706 0.172803 CAACTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
3493 3707 0.535797 CCAACTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
3494 3708 1.553706 TCCAACTACTCCCTCCGTTC 58.446 55.000 0.00 0.00 0.00 3.95
3495 3709 2.019807 TTCCAACTACTCCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
3496 3710 2.249309 ATTCCAACTACTCCCTCCGT 57.751 50.000 0.00 0.00 0.00 4.69
3497 3711 4.748277 TTTATTCCAACTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
3725 3939 4.093556 GGATAAGCACACACTTTCAGTAGC 59.906 45.833 0.00 0.00 0.00 3.58
3731 3945 4.081087 TCCTAGGGATAAGCACACACTTTC 60.081 45.833 9.46 0.00 0.00 2.62
3775 3991 3.084786 CCAGGAAAGTTCTTGATGGTCC 58.915 50.000 4.84 0.00 36.49 4.46
3820 4051 7.396540 AATTCACACAAGAGTATTTGGATCC 57.603 36.000 4.20 4.20 32.32 3.36
3877 4108 3.658757 TTTTTGGCATGCTTGTACTCC 57.341 42.857 18.92 0.00 0.00 3.85
3905 4136 3.735237 AGCAGTATACTCCATTGTCCG 57.265 47.619 1.26 0.00 0.00 4.79
3918 4149 8.624367 ACACTCGATATAGTAGAAAGCAGTAT 57.376 34.615 0.00 0.00 0.00 2.12
3937 4168 4.755123 AGGGACACAATTAGAAAACACTCG 59.245 41.667 0.00 0.00 0.00 4.18
4097 4328 0.978151 ATCCTGCAGCAAAATGCCAA 59.022 45.000 8.66 0.00 46.52 4.52
4161 4392 3.600388 CTCTTGTCGAAAGGCCTGTATT 58.400 45.455 5.69 0.00 32.11 1.89
4268 4500 5.393135 GGCTAAGAAAATACTGAAAGCCACC 60.393 44.000 5.20 0.00 37.60 4.61
4421 4667 7.980662 TCTGTGGCCATGTTATTTTCATATTTG 59.019 33.333 9.72 0.00 0.00 2.32
4827 5084 5.619220 AGAGATGAGATTTACCATGCCTTC 58.381 41.667 0.00 0.00 0.00 3.46
5042 5706 7.059788 ACATGTTGGGTCTTTATATGCATGTA 58.940 34.615 10.16 3.81 41.39 2.29
5184 5863 9.871238 GAGACATGTCTAATCTAGTTAAAACCA 57.129 33.333 27.95 0.00 40.61 3.67
5206 5885 6.987404 GGATACACCATAAGAGAAAAGGAGAC 59.013 42.308 0.00 0.00 38.79 3.36
5335 6015 5.709631 TGCCAGTGAGTATTGAAGCATAAAA 59.290 36.000 0.00 0.00 0.00 1.52
5687 6376 6.249893 CGTTTTGTATGCAATCAATGTCTCTG 59.750 38.462 0.00 0.00 34.18 3.35
5703 6392 8.626526 AGGTGTCTCAAATTTTACGTTTTGTAT 58.373 29.630 9.57 0.00 35.01 2.29
5719 6408 7.581213 ACAAATACAAAATCAGGTGTCTCAA 57.419 32.000 0.00 0.00 0.00 3.02
5756 6445 7.827819 TTATCTGGAATTCAACTTCTACACG 57.172 36.000 7.93 0.00 0.00 4.49
5870 6570 0.181350 GTAGAATCCAGCCACCCAGG 59.819 60.000 0.00 0.00 41.84 4.45
5871 6571 0.181350 GGTAGAATCCAGCCACCCAG 59.819 60.000 0.00 0.00 0.00 4.45
6200 6903 1.376543 ATCTGCAACCTGATTGAGCG 58.623 50.000 0.00 0.00 41.23 5.03
6255 6958 5.164002 CGTTCCTTTTCCTGTTTTTGTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
6296 6999 7.756272 GCTGTGTATGTCAATCAATCAAATGAA 59.244 33.333 0.00 0.00 32.06 2.57
6348 7091 1.680735 ACACAAGAAAGCGGCATCAAA 59.319 42.857 1.45 0.00 0.00 2.69
6388 7131 2.017049 GGTTCATTGCGCAATACCTCT 58.983 47.619 33.32 15.24 30.44 3.69
6438 7181 5.063880 ACCACAGGAACTTCTGTTGATTAC 58.936 41.667 3.62 0.00 44.74 1.89
6600 7345 9.890629 TGACAGATAAAACTACATAGAAGCAAT 57.109 29.630 0.00 0.00 0.00 3.56
6677 7424 8.256611 TGCTGAGACAAATATTACTTGAAGTC 57.743 34.615 0.00 0.00 0.00 3.01
6686 7433 5.129320 TGAGGAGCTGCTGAGACAAATATTA 59.871 40.000 14.48 0.00 0.00 0.98
6696 7519 2.502295 ACTTTTTGAGGAGCTGCTGAG 58.498 47.619 14.48 5.12 0.00 3.35
6757 7587 1.094785 TGCCAAATTCTAGGAAGCGC 58.905 50.000 0.00 0.00 0.00 5.92
6767 7597 3.184986 GCTCATGTTGTTGTGCCAAATTC 59.815 43.478 0.00 0.00 31.58 2.17
6819 7667 7.696453 CGCAATTAATCGGACAAATTTAGAAGT 59.304 33.333 0.00 0.00 0.00 3.01
6848 7700 5.475909 TCCTAGGTGACCAATAATACTAGCG 59.524 44.000 9.08 0.00 0.00 4.26
7106 7960 7.159372 TGACCTACATAGGAAAGAGTTTCAAC 58.841 38.462 12.05 0.00 46.63 3.18
7208 8062 4.992951 AGTACATACGTTTCCCAACAACTC 59.007 41.667 0.00 0.00 32.54 3.01
7305 8159 1.529438 ACATGTACGAAAACCAGCACG 59.471 47.619 0.00 0.00 0.00 5.34
7429 8283 1.078918 CGCCTGATTCTGGACAGCA 60.079 57.895 13.34 0.00 33.40 4.41
7446 8300 1.937846 GCAGATGCATTTCGCTGCG 60.938 57.895 18.82 17.25 45.30 5.18
7506 8361 3.850098 CTCACCGCCTTGGCAGGTT 62.850 63.158 19.81 7.97 43.18 3.50
7507 8362 4.335647 CTCACCGCCTTGGCAGGT 62.336 66.667 17.72 17.72 43.18 4.00
7509 8364 1.898574 AAACTCACCGCCTTGGCAG 60.899 57.895 12.45 2.66 43.94 4.85
7513 8368 2.175184 CTCGCAAACTCACCGCCTTG 62.175 60.000 0.00 0.00 0.00 3.61
7523 8378 0.832135 TCCCTCCTCACTCGCAAACT 60.832 55.000 0.00 0.00 0.00 2.66
7526 8381 1.118965 TGTTCCCTCCTCACTCGCAA 61.119 55.000 0.00 0.00 0.00 4.85
7547 8402 2.509336 GCCACTCCATCACCGACG 60.509 66.667 0.00 0.00 0.00 5.12
7561 8420 3.700038 TCTTTTCTTGGGTTAAAACGCCA 59.300 39.130 7.36 3.76 40.74 5.69
7563 8422 5.116528 CGAATCTTTTCTTGGGTTAAAACGC 59.883 40.000 3.16 3.16 41.69 4.84
7642 8501 2.428925 TTGCGGTCGGAGGATACCC 61.429 63.158 0.00 0.00 31.68 3.69
7646 8505 1.218316 GAAGTTGCGGTCGGAGGAT 59.782 57.895 0.00 0.00 0.00 3.24
7736 8628 4.112634 CAATCCGATCACGTGTTAGTCAT 58.887 43.478 16.51 0.00 37.88 3.06
7834 8733 2.489329 ACAAGGTTCTTGATGATTGGCG 59.511 45.455 13.74 0.00 0.00 5.69
7878 8778 1.963515 GAAGAAGGCAAGGGAGCAAAA 59.036 47.619 0.00 0.00 35.83 2.44
7879 8779 1.145738 AGAAGAAGGCAAGGGAGCAAA 59.854 47.619 0.00 0.00 35.83 3.68
7880 8780 0.773644 AGAAGAAGGCAAGGGAGCAA 59.226 50.000 0.00 0.00 35.83 3.91
7881 8781 0.037303 CAGAAGAAGGCAAGGGAGCA 59.963 55.000 0.00 0.00 35.83 4.26
7882 8782 1.311651 GCAGAAGAAGGCAAGGGAGC 61.312 60.000 0.00 0.00 0.00 4.70
7883 8783 0.327591 AGCAGAAGAAGGCAAGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
7884 8784 0.773644 AAGCAGAAGAAGGCAAGGGA 59.226 50.000 0.00 0.00 0.00 4.20
7903 8803 2.700897 TCCCGCCAAAAGGAAATTGAAA 59.299 40.909 0.00 0.00 0.00 2.69
7909 8809 2.298729 CAGAATTCCCGCCAAAAGGAAA 59.701 45.455 0.65 0.00 45.03 3.13
7912 8812 1.544724 TCAGAATTCCCGCCAAAAGG 58.455 50.000 0.65 0.00 0.00 3.11
7913 8813 3.429410 GGATTCAGAATTCCCGCCAAAAG 60.429 47.826 0.65 0.00 0.00 2.27
7929 8830 2.562298 GGTTGATTTGTGCTGGGATTCA 59.438 45.455 0.00 0.00 0.00 2.57
7997 8898 9.271828 CAAAATAGCCAAGTTATGTTTTTCCTT 57.728 29.630 0.00 0.00 0.00 3.36
8008 8909 5.560724 AGAGCAGACAAAATAGCCAAGTTA 58.439 37.500 0.00 0.00 0.00 2.24
8014 8915 6.442513 AATTGTAGAGCAGACAAAATAGCC 57.557 37.500 2.72 0.00 40.07 3.93
8032 8933 3.347216 AGGCACTGCTCGAATAAATTGT 58.653 40.909 0.00 0.00 37.18 2.71
8034 8935 3.624861 CAGAGGCACTGCTCGAATAAATT 59.375 43.478 0.00 0.00 41.55 1.82
8037 8938 2.299993 CAGAGGCACTGCTCGAATAA 57.700 50.000 0.00 0.00 41.55 1.40
8039 8940 4.928398 CAGAGGCACTGCTCGAAT 57.072 55.556 0.00 0.00 41.55 3.34
8048 8949 1.831580 AATTGGAAGAGCAGAGGCAC 58.168 50.000 0.00 0.00 44.61 5.01
8049 8950 2.592102 AAATTGGAAGAGCAGAGGCA 57.408 45.000 0.00 0.00 44.61 4.75
8050 8951 3.615155 ACTAAATTGGAAGAGCAGAGGC 58.385 45.455 0.00 0.00 41.61 4.70
8051 8952 5.983540 AGTACTAAATTGGAAGAGCAGAGG 58.016 41.667 0.00 0.00 0.00 3.69
8052 8953 6.533367 GTGAGTACTAAATTGGAAGAGCAGAG 59.467 42.308 0.00 0.00 0.00 3.35
8053 8954 6.211584 AGTGAGTACTAAATTGGAAGAGCAGA 59.788 38.462 0.00 0.00 34.74 4.26
8054 8955 6.402222 AGTGAGTACTAAATTGGAAGAGCAG 58.598 40.000 0.00 0.00 34.74 4.24
8055 8956 6.360370 AGTGAGTACTAAATTGGAAGAGCA 57.640 37.500 0.00 0.00 34.74 4.26
8056 8957 5.813157 GGAGTGAGTACTAAATTGGAAGAGC 59.187 44.000 0.00 0.00 37.25 4.09
8057 8958 6.037098 CGGAGTGAGTACTAAATTGGAAGAG 58.963 44.000 0.00 0.00 37.25 2.85
8058 8959 5.479375 ACGGAGTGAGTACTAAATTGGAAGA 59.521 40.000 0.00 0.00 42.51 2.87
8059 8960 5.721232 ACGGAGTGAGTACTAAATTGGAAG 58.279 41.667 0.00 0.00 42.51 3.46
8060 8961 5.733620 ACGGAGTGAGTACTAAATTGGAA 57.266 39.130 0.00 0.00 42.51 3.53
8080 8981 5.950544 TGGGGATCTTATATTATGGGACG 57.049 43.478 0.00 0.00 0.00 4.79
8099 9000 7.607991 AGCTTGGAAACGATCTTATATTATGGG 59.392 37.037 0.00 0.00 0.00 4.00
8100 9001 8.553459 AGCTTGGAAACGATCTTATATTATGG 57.447 34.615 0.00 0.00 0.00 2.74
8107 9008 7.174253 TGTGTTTTAGCTTGGAAACGATCTTAT 59.826 33.333 0.00 0.00 38.31 1.73
8108 9009 6.483974 TGTGTTTTAGCTTGGAAACGATCTTA 59.516 34.615 0.00 0.00 38.31 2.10
8109 9010 5.298276 TGTGTTTTAGCTTGGAAACGATCTT 59.702 36.000 0.00 0.00 38.31 2.40
8110 9011 4.819630 TGTGTTTTAGCTTGGAAACGATCT 59.180 37.500 0.00 0.00 38.31 2.75
8111 9012 5.049680 TCTGTGTTTTAGCTTGGAAACGATC 60.050 40.000 0.00 0.00 38.31 3.69
8112 9013 4.819630 TCTGTGTTTTAGCTTGGAAACGAT 59.180 37.500 0.00 0.00 38.31 3.73
8113 9014 4.193090 TCTGTGTTTTAGCTTGGAAACGA 58.807 39.130 0.00 0.00 38.31 3.85
8114 9015 4.527564 CTCTGTGTTTTAGCTTGGAAACG 58.472 43.478 0.00 0.00 38.31 3.60
8115 9016 4.261614 CCCTCTGTGTTTTAGCTTGGAAAC 60.262 45.833 0.00 2.18 36.53 2.78
8116 9017 3.888930 CCCTCTGTGTTTTAGCTTGGAAA 59.111 43.478 0.00 0.00 0.00 3.13
8117 9018 3.137544 TCCCTCTGTGTTTTAGCTTGGAA 59.862 43.478 0.00 0.00 0.00 3.53
8118 9019 2.708861 TCCCTCTGTGTTTTAGCTTGGA 59.291 45.455 0.00 0.00 0.00 3.53
8119 9020 3.140325 TCCCTCTGTGTTTTAGCTTGG 57.860 47.619 0.00 0.00 0.00 3.61
8120 9021 7.396540 AATATTCCCTCTGTGTTTTAGCTTG 57.603 36.000 0.00 0.00 0.00 4.01
8121 9022 7.093771 CCAAATATTCCCTCTGTGTTTTAGCTT 60.094 37.037 0.00 0.00 0.00 3.74
8122 9023 6.378280 CCAAATATTCCCTCTGTGTTTTAGCT 59.622 38.462 0.00 0.00 0.00 3.32
8123 9024 6.405842 CCCAAATATTCCCTCTGTGTTTTAGC 60.406 42.308 0.00 0.00 0.00 3.09
8124 9025 6.663523 ACCCAAATATTCCCTCTGTGTTTTAG 59.336 38.462 0.00 0.00 0.00 1.85
8125 9026 6.557568 ACCCAAATATTCCCTCTGTGTTTTA 58.442 36.000 0.00 0.00 0.00 1.52
8126 9027 5.402630 ACCCAAATATTCCCTCTGTGTTTT 58.597 37.500 0.00 0.00 0.00 2.43
8127 9028 5.010708 ACCCAAATATTCCCTCTGTGTTT 57.989 39.130 0.00 0.00 0.00 2.83
8128 9029 4.675063 ACCCAAATATTCCCTCTGTGTT 57.325 40.909 0.00 0.00 0.00 3.32
8129 9030 4.385310 GCTACCCAAATATTCCCTCTGTGT 60.385 45.833 0.00 0.00 0.00 3.72
8130 9031 4.137543 GCTACCCAAATATTCCCTCTGTG 58.862 47.826 0.00 0.00 0.00 3.66
8131 9032 3.785887 TGCTACCCAAATATTCCCTCTGT 59.214 43.478 0.00 0.00 0.00 3.41
8132 9033 4.437682 TGCTACCCAAATATTCCCTCTG 57.562 45.455 0.00 0.00 0.00 3.35
8147 9048 1.133976 ACTGCTGGGATTCATGCTACC 60.134 52.381 0.00 0.00 0.00 3.18
8152 9053 4.321718 CCATACTACTGCTGGGATTCATG 58.678 47.826 0.00 0.00 0.00 3.07
8160 9106 0.546122 TTGGCCCATACTACTGCTGG 59.454 55.000 0.00 0.00 0.00 4.85
8161 9107 1.210478 AGTTGGCCCATACTACTGCTG 59.790 52.381 0.00 0.00 0.00 4.41
8175 9121 1.448717 GAGCTCGAGGGAAGTTGGC 60.449 63.158 15.58 0.00 0.00 4.52
8178 9124 1.181786 CAGAGAGCTCGAGGGAAGTT 58.818 55.000 15.58 0.00 34.09 2.66
8187 9133 1.735369 GCTGGAGAAACAGAGAGCTCG 60.735 57.143 8.37 0.00 40.97 5.03
8197 9143 2.866028 CGCAGCAGCTGGAGAAAC 59.134 61.111 24.13 4.99 39.10 2.78
8219 9165 0.411058 AAAGGGCAAGCTGAGGGAAT 59.589 50.000 0.00 0.00 0.00 3.01
8222 9168 0.540365 TGAAAAGGGCAAGCTGAGGG 60.540 55.000 0.00 0.00 0.00 4.30
8238 9184 2.038269 GGCGGTGGCGAAAGATGAA 61.038 57.895 0.00 0.00 41.24 2.57
8239 9185 2.435938 GGCGGTGGCGAAAGATGA 60.436 61.111 0.00 0.00 41.24 2.92
8255 9201 2.280524 TCCAACGTTGCAGACCGG 60.281 61.111 22.93 7.51 0.00 5.28
8256 9202 2.954753 GCTCCAACGTTGCAGACCG 61.955 63.158 23.26 8.44 0.00 4.79
8257 9203 1.598130 AGCTCCAACGTTGCAGACC 60.598 57.895 23.26 6.08 0.00 3.85
8258 9204 1.160329 ACAGCTCCAACGTTGCAGAC 61.160 55.000 23.26 13.53 0.00 3.51
8259 9205 0.880278 GACAGCTCCAACGTTGCAGA 60.880 55.000 23.26 14.38 0.00 4.26
8260 9206 1.159713 TGACAGCTCCAACGTTGCAG 61.160 55.000 22.93 19.02 0.00 4.41
8261 9207 0.746204 TTGACAGCTCCAACGTTGCA 60.746 50.000 22.93 7.36 0.00 4.08
8262 9208 0.040958 CTTGACAGCTCCAACGTTGC 60.041 55.000 22.93 11.87 0.00 4.17
8263 9209 1.299541 ACTTGACAGCTCCAACGTTG 58.700 50.000 21.47 21.47 0.00 4.10
8264 9210 2.364324 TCTACTTGACAGCTCCAACGTT 59.636 45.455 0.00 0.00 0.00 3.99
8265 9211 1.961394 TCTACTTGACAGCTCCAACGT 59.039 47.619 0.00 0.00 0.00 3.99
8266 9212 2.600731 CTCTACTTGACAGCTCCAACG 58.399 52.381 0.00 0.00 0.00 4.10
8267 9213 2.028567 AGCTCTACTTGACAGCTCCAAC 60.029 50.000 0.00 0.00 0.00 3.77
8268 9214 2.251818 AGCTCTACTTGACAGCTCCAA 58.748 47.619 0.00 0.00 0.00 3.53
8269 9215 1.930251 AGCTCTACTTGACAGCTCCA 58.070 50.000 0.00 0.00 0.00 3.86
8279 9225 1.296715 CCCGCACCAAGCTCTACTT 59.703 57.895 0.00 0.00 42.61 2.24
8280 9226 2.982130 CCCGCACCAAGCTCTACT 59.018 61.111 0.00 0.00 42.61 2.57
8281 9227 2.820037 GCCCGCACCAAGCTCTAC 60.820 66.667 0.00 0.00 42.61 2.59
8282 9228 2.803155 CTTGCCCGCACCAAGCTCTA 62.803 60.000 0.00 0.00 42.61 2.43
8283 9229 4.269523 TTGCCCGCACCAAGCTCT 62.270 61.111 0.00 0.00 42.61 4.09
8284 9230 3.741476 CTTGCCCGCACCAAGCTC 61.741 66.667 0.00 0.00 42.61 4.09
8295 9241 4.778143 ACGATGACCGCCTTGCCC 62.778 66.667 0.00 0.00 43.32 5.36
8296 9242 3.499737 CACGATGACCGCCTTGCC 61.500 66.667 0.00 0.00 43.32 4.52
8297 9243 4.166011 GCACGATGACCGCCTTGC 62.166 66.667 0.00 0.00 43.32 4.01
8298 9244 3.853330 CGCACGATGACCGCCTTG 61.853 66.667 0.00 0.00 43.32 3.61
8302 9248 4.147322 CAACCGCACGATGACCGC 62.147 66.667 0.00 0.00 43.32 5.68
8303 9249 4.147322 GCAACCGCACGATGACCG 62.147 66.667 0.00 0.00 45.44 4.79
8304 9250 3.799755 GGCAACCGCACGATGACC 61.800 66.667 0.00 0.00 41.24 4.02
8316 9262 2.338500 CTAGAACGAAGACAGGGCAAC 58.662 52.381 0.00 0.00 0.00 4.17
8341 9287 1.072348 CGTCGCACCGTCGAATTTATC 60.072 52.381 0.00 0.00 40.28 1.75
8343 9289 0.387112 ACGTCGCACCGTCGAATTTA 60.387 50.000 10.74 0.00 40.28 1.40
8346 9292 2.503375 GACGTCGCACCGTCGAAT 60.503 61.111 0.00 0.00 46.47 3.34
8357 9515 0.942410 TTTTGGCTCGAAGGACGTCG 60.942 55.000 9.92 0.00 43.13 5.12
8362 9520 2.819608 CCTTTCATTTTGGCTCGAAGGA 59.180 45.455 0.00 0.00 0.00 3.36
8364 9522 2.558359 ACCCTTTCATTTTGGCTCGAAG 59.442 45.455 0.00 0.00 0.00 3.79
8383 9541 2.433146 GCCGAAGAGGGACCCTACC 61.433 68.421 14.87 1.22 41.48 3.18
8432 9590 2.204865 CTGCAACGGGGTTATGGGGA 62.205 60.000 0.00 0.00 0.00 4.81
8433 9591 1.752694 CTGCAACGGGGTTATGGGG 60.753 63.158 0.00 0.00 0.00 4.96
8434 9592 1.752694 CCTGCAACGGGGTTATGGG 60.753 63.158 0.00 0.00 0.00 4.00
8435 9593 2.414785 GCCTGCAACGGGGTTATGG 61.415 63.158 0.00 0.00 0.00 2.74
8436 9594 2.760159 CGCCTGCAACGGGGTTATG 61.760 63.158 1.22 0.00 32.74 1.90
8437 9595 2.265467 ATCGCCTGCAACGGGGTTAT 62.265 55.000 8.63 0.00 38.12 1.89
8438 9596 2.961893 ATCGCCTGCAACGGGGTTA 61.962 57.895 8.63 0.00 38.12 2.85
8439 9597 4.344865 ATCGCCTGCAACGGGGTT 62.345 61.111 8.63 0.00 38.12 4.11
8471 9629 1.067354 GGGAAACATCAGCTGCCTTTG 60.067 52.381 9.47 6.54 0.00 2.77
8474 9632 0.323178 CAGGGAAACATCAGCTGCCT 60.323 55.000 9.47 4.77 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.