Multiple sequence alignment - TraesCS5A01G085200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G085200 chr5A 100.000 6150 0 0 1 6150 111628617 111622468 0.000000e+00 11358
1 TraesCS5A01G085200 chr5A 99.306 288 1 1 1 288 470080360 470080074 2.540000e-143 520
2 TraesCS5A01G085200 chr5D 95.232 4614 148 39 1564 6134 108127226 108122642 0.000000e+00 7236
3 TraesCS5A01G085200 chr5D 87.586 580 29 11 639 1200 108128555 108128001 3.130000e-177 632
4 TraesCS5A01G085200 chr5D 94.495 327 16 1 1230 1556 108127926 108127602 2.560000e-138 503
5 TraesCS5A01G085200 chr5D 90.295 237 11 6 461 696 108128780 108128555 3.600000e-77 300
6 TraesCS5A01G085200 chr5D 93.064 173 9 2 288 460 108129071 108128902 3.680000e-62 250
7 TraesCS5A01G085200 chr5B 94.316 4504 169 31 1228 5685 118533032 118528570 0.000000e+00 6818
8 TraesCS5A01G085200 chr5B 93.763 465 16 4 5683 6134 118528544 118528080 0.000000e+00 686
9 TraesCS5A01G085200 chr5B 85.960 349 27 6 500 827 118534186 118533839 2.730000e-93 353
10 TraesCS5A01G085200 chr5B 85.674 356 24 6 867 1200 118533460 118533110 3.530000e-92 350
11 TraesCS5A01G085200 chr4B 98.983 295 1 2 1 295 634772526 634772818 1.520000e-145 527
12 TraesCS5A01G085200 chr4B 82.824 425 40 16 470 872 227189164 227189577 3.530000e-92 350
13 TraesCS5A01G085200 chr3A 99.653 288 0 1 1 288 714575648 714575934 5.460000e-145 525
14 TraesCS5A01G085200 chr3A 99.308 289 1 1 1 288 646586435 646586723 7.060000e-144 521
15 TraesCS5A01G085200 chr3A 99.303 287 1 1 1 287 1324421 1324136 9.140000e-143 518
16 TraesCS5A01G085200 chr3A 97.351 302 4 4 1 301 36762173 36761875 1.530000e-140 510
17 TraesCS5A01G085200 chr7A 98.328 299 3 2 1 298 661611525 661611822 1.960000e-144 523
18 TraesCS5A01G085200 chr1A 99.652 287 0 1 1 287 369999831 370000116 1.960000e-144 523
19 TraesCS5A01G085200 chr1B 97.039 304 5 3 1 303 341553131 341552831 5.500000e-140 508


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G085200 chr5A 111622468 111628617 6149 True 11358.00 11358 100.00000 1 6150 1 chr5A.!!$R1 6149
1 TraesCS5A01G085200 chr5D 108122642 108129071 6429 True 1784.20 7236 92.13440 288 6134 5 chr5D.!!$R1 5846
2 TraesCS5A01G085200 chr5B 118528080 118534186 6106 True 2051.75 6818 89.92825 500 6134 4 chr5B.!!$R1 5634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 769 0.107993 CCACCGAGAGCACATGTCAT 60.108 55.0 0.00 0.00 0.00 3.06 F
1071 1651 0.033405 TCCCTCTGCTACCTACGCTT 60.033 55.0 0.00 0.00 0.00 4.68 F
1222 1823 0.099082 GTACGCTCTCCGACTCCTTG 59.901 60.0 0.00 0.00 41.02 3.61 F
2125 3134 0.321653 GTACACACCAGGGCCTCTTG 60.322 60.0 0.95 6.17 0.00 3.02 F
2815 3826 0.392998 AATTGTAGCTGGTCCTGCGG 60.393 55.0 14.44 0.00 33.59 5.69 F
3001 4012 0.472471 TGGTGTGGACAGGAGTTTCC 59.528 55.0 0.00 0.00 36.58 3.13 F
3473 4484 0.603707 AGACGTTGATGTGTGGCCTG 60.604 55.0 3.32 0.00 0.00 4.85 F
4572 5603 0.685097 TGGTTCCAGTCAGGCAGTAC 59.315 55.0 0.00 0.00 37.29 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 2611 0.110104 AGCAAGCAAGCTTCTCTGGT 59.890 50.000 3.97 0.00 43.70 4.00 R
2834 3845 0.106521 GGAGGAGATCTGAGGCAAGC 59.893 60.000 0.00 0.00 0.00 4.01 R
2880 3891 0.110373 GTTGGGTTAACTGAAGCGCG 60.110 55.000 0.00 0.00 36.33 6.86 R
3765 4776 0.386476 TCTGTGCGTACTTTGACGGT 59.614 50.000 4.97 0.00 43.13 4.83 R
4093 5109 0.402504 ACGCAAAATACCCCCACAGA 59.597 50.000 0.00 0.00 0.00 3.41 R
4868 5899 1.153549 GATCTCACCGCGGCTTCTT 60.154 57.895 28.58 7.78 0.00 2.52 R
4996 6027 1.446792 CGTTCATGCCTCAGCTCGT 60.447 57.895 0.00 0.00 40.80 4.18 R
5687 6739 1.402968 CCATTTGAAGCATGGGACTCG 59.597 52.381 0.00 0.00 38.05 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.933483 GCGTGCCAATTTTCGTGA 57.067 50.000 0.00 0.00 0.00 4.35
18 19 3.399879 GCGTGCCAATTTTCGTGAT 57.600 47.368 0.00 0.00 0.00 3.06
19 20 0.984109 GCGTGCCAATTTTCGTGATG 59.016 50.000 0.00 0.00 0.00 3.07
20 21 1.400888 GCGTGCCAATTTTCGTGATGA 60.401 47.619 0.00 0.00 0.00 2.92
21 22 2.920227 GCGTGCCAATTTTCGTGATGAA 60.920 45.455 0.00 0.00 33.85 2.57
22 23 3.304257 CGTGCCAATTTTCGTGATGAAA 58.696 40.909 0.00 0.00 44.70 2.69
23 24 3.919804 CGTGCCAATTTTCGTGATGAAAT 59.080 39.130 0.02 0.00 45.62 2.17
24 25 4.201513 CGTGCCAATTTTCGTGATGAAATG 60.202 41.667 0.02 0.00 45.62 2.32
25 26 4.922692 GTGCCAATTTTCGTGATGAAATGA 59.077 37.500 0.02 0.00 45.62 2.57
26 27 4.922692 TGCCAATTTTCGTGATGAAATGAC 59.077 37.500 0.02 0.00 45.62 3.06
27 28 4.922692 GCCAATTTTCGTGATGAAATGACA 59.077 37.500 0.02 0.00 45.62 3.58
28 29 5.577945 GCCAATTTTCGTGATGAAATGACAT 59.422 36.000 0.02 0.00 45.62 3.06
29 30 6.091169 GCCAATTTTCGTGATGAAATGACATT 59.909 34.615 0.02 0.00 45.62 2.71
30 31 7.360269 GCCAATTTTCGTGATGAAATGACATTT 60.360 33.333 13.24 13.24 45.62 2.32
31 32 7.953173 CCAATTTTCGTGATGAAATGACATTTG 59.047 33.333 18.00 3.05 45.62 2.32
32 33 8.489559 CAATTTTCGTGATGAAATGACATTTGT 58.510 29.630 18.00 6.62 45.62 2.83
33 34 6.989796 TTTCGTGATGAAATGACATTTGTG 57.010 33.333 18.00 2.12 41.59 3.33
34 35 5.045668 TCGTGATGAAATGACATTTGTGG 57.954 39.130 18.00 2.26 25.53 4.17
35 36 4.759183 TCGTGATGAAATGACATTTGTGGA 59.241 37.500 18.00 4.36 25.53 4.02
36 37 5.090757 CGTGATGAAATGACATTTGTGGAG 58.909 41.667 18.00 2.09 25.53 3.86
37 38 5.404946 GTGATGAAATGACATTTGTGGAGG 58.595 41.667 18.00 0.00 27.82 4.30
38 39 5.047802 GTGATGAAATGACATTTGTGGAGGT 60.048 40.000 18.00 0.00 27.82 3.85
39 40 4.852134 TGAAATGACATTTGTGGAGGTG 57.148 40.909 18.00 0.00 31.47 4.00
40 41 4.214310 TGAAATGACATTTGTGGAGGTGT 58.786 39.130 18.00 0.00 31.47 4.16
41 42 4.278170 TGAAATGACATTTGTGGAGGTGTC 59.722 41.667 18.00 0.67 40.93 3.67
43 44 2.849942 TGACATTTGTGGAGGTGTCAG 58.150 47.619 3.18 0.00 44.14 3.51
44 45 1.537202 GACATTTGTGGAGGTGTCAGC 59.463 52.381 0.00 0.00 40.41 4.26
45 46 1.133823 ACATTTGTGGAGGTGTCAGCA 60.134 47.619 4.59 0.00 0.00 4.41
46 47 1.955778 CATTTGTGGAGGTGTCAGCAA 59.044 47.619 4.59 0.00 0.00 3.91
47 48 2.136298 TTTGTGGAGGTGTCAGCAAA 57.864 45.000 4.59 0.00 0.00 3.68
48 49 2.136298 TTGTGGAGGTGTCAGCAAAA 57.864 45.000 4.59 0.00 0.00 2.44
49 50 2.136298 TGTGGAGGTGTCAGCAAAAA 57.864 45.000 4.59 0.00 0.00 1.94
95 96 5.816449 AACTGTTTTTGGAAGCATTTTGG 57.184 34.783 0.00 0.00 0.00 3.28
96 97 5.096443 ACTGTTTTTGGAAGCATTTTGGA 57.904 34.783 0.00 0.00 0.00 3.53
97 98 5.118286 ACTGTTTTTGGAAGCATTTTGGAG 58.882 37.500 0.00 0.00 0.00 3.86
98 99 3.876320 TGTTTTTGGAAGCATTTTGGAGC 59.124 39.130 0.00 0.00 0.00 4.70
99 100 3.834489 TTTTGGAAGCATTTTGGAGCA 57.166 38.095 0.00 0.00 0.00 4.26
100 101 4.354893 TTTTGGAAGCATTTTGGAGCAT 57.645 36.364 0.00 0.00 0.00 3.79
101 102 3.598019 TTGGAAGCATTTTGGAGCATC 57.402 42.857 0.00 0.00 0.00 3.91
102 103 1.473677 TGGAAGCATTTTGGAGCATCG 59.526 47.619 0.00 0.00 34.37 3.84
103 104 1.745087 GGAAGCATTTTGGAGCATCGA 59.255 47.619 0.00 0.00 34.37 3.59
104 105 2.360165 GGAAGCATTTTGGAGCATCGAT 59.640 45.455 0.00 0.00 34.37 3.59
105 106 3.181483 GGAAGCATTTTGGAGCATCGATT 60.181 43.478 0.00 0.00 34.37 3.34
106 107 4.427312 GAAGCATTTTGGAGCATCGATTT 58.573 39.130 0.00 0.00 34.37 2.17
107 108 4.460948 AGCATTTTGGAGCATCGATTTT 57.539 36.364 0.00 0.00 34.37 1.82
108 109 4.178540 AGCATTTTGGAGCATCGATTTTG 58.821 39.130 0.00 0.00 34.37 2.44
109 110 3.928375 GCATTTTGGAGCATCGATTTTGT 59.072 39.130 0.00 0.00 34.37 2.83
110 111 4.389687 GCATTTTGGAGCATCGATTTTGTT 59.610 37.500 0.00 0.00 34.37 2.83
111 112 5.106987 GCATTTTGGAGCATCGATTTTGTTT 60.107 36.000 0.00 0.00 34.37 2.83
112 113 6.566376 GCATTTTGGAGCATCGATTTTGTTTT 60.566 34.615 0.00 0.00 34.37 2.43
113 114 6.917217 TTTTGGAGCATCGATTTTGTTTTT 57.083 29.167 0.00 0.00 34.37 1.94
132 133 2.275134 TTTTGCTGAGACCTGCATGA 57.725 45.000 0.00 0.00 44.76 3.07
133 134 2.275134 TTTGCTGAGACCTGCATGAA 57.725 45.000 0.00 0.00 44.76 2.57
134 135 2.502142 TTGCTGAGACCTGCATGAAT 57.498 45.000 0.00 0.00 44.76 2.57
135 136 1.746470 TGCTGAGACCTGCATGAATG 58.254 50.000 0.00 0.00 41.38 2.67
136 137 1.003928 TGCTGAGACCTGCATGAATGT 59.996 47.619 0.00 0.00 41.38 2.71
137 138 1.669779 GCTGAGACCTGCATGAATGTC 59.330 52.381 0.00 0.00 37.23 3.06
138 139 2.938314 GCTGAGACCTGCATGAATGTCA 60.938 50.000 11.29 0.00 37.23 3.58
139 140 3.542648 CTGAGACCTGCATGAATGTCAT 58.457 45.455 11.29 0.00 37.65 3.06
140 141 3.945921 CTGAGACCTGCATGAATGTCATT 59.054 43.478 11.29 0.00 34.28 2.57
141 142 4.338012 TGAGACCTGCATGAATGTCATTT 58.662 39.130 11.29 0.00 34.28 2.32
142 143 4.768448 TGAGACCTGCATGAATGTCATTTT 59.232 37.500 11.29 0.00 34.28 1.82
143 144 5.068234 AGACCTGCATGAATGTCATTTTG 57.932 39.130 11.29 2.73 34.28 2.44
144 145 4.525487 AGACCTGCATGAATGTCATTTTGT 59.475 37.500 11.29 0.00 34.28 2.83
145 146 4.813027 ACCTGCATGAATGTCATTTTGTC 58.187 39.130 0.00 0.01 34.28 3.18
146 147 4.281435 ACCTGCATGAATGTCATTTTGTCA 59.719 37.500 0.00 0.00 34.28 3.58
147 148 5.046878 ACCTGCATGAATGTCATTTTGTCAT 60.047 36.000 0.00 0.00 34.28 3.06
148 149 5.290885 CCTGCATGAATGTCATTTTGTCATG 59.709 40.000 16.16 16.16 45.40 3.07
149 150 6.026947 TGCATGAATGTCATTTTGTCATGA 57.973 33.333 21.57 9.62 45.44 3.07
150 151 6.456501 TGCATGAATGTCATTTTGTCATGAA 58.543 32.000 21.57 13.06 45.44 2.57
151 152 6.929606 TGCATGAATGTCATTTTGTCATGAAA 59.070 30.769 21.57 10.87 45.44 2.69
152 153 7.441458 TGCATGAATGTCATTTTGTCATGAAAA 59.559 29.630 21.57 0.00 45.44 2.29
153 154 8.447833 GCATGAATGTCATTTTGTCATGAAAAT 58.552 29.630 21.57 0.00 45.44 1.82
160 161 8.750416 TGTCATTTTGTCATGAAAATTTGTACG 58.250 29.630 0.00 0.00 34.05 3.67
161 162 7.735586 GTCATTTTGTCATGAAAATTTGTACGC 59.264 33.333 0.00 0.00 34.05 4.42
162 163 7.436376 TCATTTTGTCATGAAAATTTGTACGCA 59.564 29.630 0.00 0.00 34.05 5.24
163 164 7.706281 TTTTGTCATGAAAATTTGTACGCAT 57.294 28.000 0.00 0.00 0.00 4.73
164 165 6.687653 TTGTCATGAAAATTTGTACGCATG 57.312 33.333 0.00 0.00 35.63 4.06
165 166 5.767269 TGTCATGAAAATTTGTACGCATGT 58.233 33.333 0.00 0.00 35.75 3.21
166 167 5.628606 TGTCATGAAAATTTGTACGCATGTG 59.371 36.000 4.30 4.30 35.75 3.21
167 168 5.855925 GTCATGAAAATTTGTACGCATGTGA 59.144 36.000 14.43 0.00 35.75 3.58
168 169 6.362016 GTCATGAAAATTTGTACGCATGTGAA 59.638 34.615 14.43 0.00 35.75 3.18
169 170 6.920210 TCATGAAAATTTGTACGCATGTGAAA 59.080 30.769 14.43 3.59 35.75 2.69
170 171 7.436376 TCATGAAAATTTGTACGCATGTGAAAA 59.564 29.630 14.43 10.58 35.75 2.29
171 172 7.525688 TGAAAATTTGTACGCATGTGAAAAA 57.474 28.000 14.43 10.24 0.00 1.94
172 173 8.136057 TGAAAATTTGTACGCATGTGAAAAAT 57.864 26.923 14.43 11.95 0.00 1.82
173 174 9.249457 TGAAAATTTGTACGCATGTGAAAAATA 57.751 25.926 14.43 0.00 0.00 1.40
176 177 8.755696 AATTTGTACGCATGTGAAAAATATGT 57.244 26.923 14.43 0.00 0.00 2.29
177 178 7.789341 TTTGTACGCATGTGAAAAATATGTC 57.211 32.000 14.43 0.00 0.00 3.06
178 179 6.487689 TGTACGCATGTGAAAAATATGTCA 57.512 33.333 14.43 0.00 0.00 3.58
179 180 6.903419 TGTACGCATGTGAAAAATATGTCAA 58.097 32.000 14.43 0.00 0.00 3.18
180 181 7.534282 TGTACGCATGTGAAAAATATGTCAAT 58.466 30.769 14.43 0.00 0.00 2.57
181 182 6.874297 ACGCATGTGAAAAATATGTCAATG 57.126 33.333 14.43 0.00 0.00 2.82
182 183 6.389091 ACGCATGTGAAAAATATGTCAATGT 58.611 32.000 14.43 0.00 0.00 2.71
183 184 6.867816 ACGCATGTGAAAAATATGTCAATGTT 59.132 30.769 14.43 0.00 0.00 2.71
184 185 7.384660 ACGCATGTGAAAAATATGTCAATGTTT 59.615 29.630 14.43 0.00 0.00 2.83
185 186 7.684897 CGCATGTGAAAAATATGTCAATGTTTG 59.315 33.333 0.00 0.00 28.64 2.93
186 187 8.497554 GCATGTGAAAAATATGTCAATGTTTGT 58.502 29.630 0.00 0.00 28.64 2.83
189 190 8.333908 TGTGAAAAATATGTCAATGTTTGTTGC 58.666 29.630 0.00 0.00 28.64 4.17
190 191 7.798052 GTGAAAAATATGTCAATGTTTGTTGCC 59.202 33.333 0.00 0.00 28.64 4.52
191 192 7.496920 TGAAAAATATGTCAATGTTTGTTGCCA 59.503 29.630 0.00 0.00 28.64 4.92
192 193 7.798596 AAAATATGTCAATGTTTGTTGCCAA 57.201 28.000 0.00 0.00 28.64 4.52
193 194 7.798596 AAATATGTCAATGTTTGTTGCCAAA 57.201 28.000 0.00 0.00 38.22 3.28
194 195 7.798596 AATATGTCAATGTTTGTTGCCAAAA 57.201 28.000 0.00 0.00 41.99 2.44
195 196 7.798596 ATATGTCAATGTTTGTTGCCAAAAA 57.201 28.000 0.00 0.00 41.99 1.94
252 253 5.508200 TTTGTTTGTACTGTAGCAAAGGG 57.492 39.130 12.57 0.00 35.58 3.95
253 254 4.159244 TGTTTGTACTGTAGCAAAGGGT 57.841 40.909 12.57 0.00 35.58 4.34
254 255 3.880490 TGTTTGTACTGTAGCAAAGGGTG 59.120 43.478 12.57 0.00 35.58 4.61
263 264 3.359002 CAAAGGGTGCCTGTGAGC 58.641 61.111 0.00 0.00 41.22 4.26
264 265 1.228367 CAAAGGGTGCCTGTGAGCT 60.228 57.895 0.00 0.00 41.22 4.09
265 266 1.073897 AAAGGGTGCCTGTGAGCTC 59.926 57.895 6.82 6.82 32.13 4.09
266 267 2.738213 AAAGGGTGCCTGTGAGCTCG 62.738 60.000 9.64 0.00 32.13 5.03
267 268 3.695606 GGGTGCCTGTGAGCTCGA 61.696 66.667 9.64 0.00 0.00 4.04
268 269 2.125753 GGTGCCTGTGAGCTCGAG 60.126 66.667 8.45 8.45 0.00 4.04
269 270 2.813042 GTGCCTGTGAGCTCGAGC 60.813 66.667 30.01 30.01 42.49 5.03
280 281 3.352447 GCTCGAGCTCACAATAGCA 57.648 52.632 29.88 0.00 45.30 3.49
281 282 0.926846 GCTCGAGCTCACAATAGCAC 59.073 55.000 29.88 0.00 45.30 4.40
282 283 1.470632 GCTCGAGCTCACAATAGCACT 60.471 52.381 29.88 0.00 45.30 4.40
283 284 2.886081 CTCGAGCTCACAATAGCACTT 58.114 47.619 15.40 0.00 45.30 3.16
284 285 3.257393 CTCGAGCTCACAATAGCACTTT 58.743 45.455 15.40 0.00 45.30 2.66
285 286 3.254060 TCGAGCTCACAATAGCACTTTC 58.746 45.455 15.40 0.00 45.30 2.62
286 287 2.028523 CGAGCTCACAATAGCACTTTCG 59.971 50.000 15.40 0.00 45.30 3.46
388 389 5.106396 ACAGCTTCACACTGATTAGCATTTC 60.106 40.000 0.00 0.00 33.78 2.17
404 405 8.970691 TTAGCATTTCTTGAAAAGCTTCATAC 57.029 30.769 24.14 0.00 45.70 2.39
406 407 8.340618 AGCATTTCTTGAAAAGCTTCATACTA 57.659 30.769 16.77 0.00 45.70 1.82
407 408 8.457261 AGCATTTCTTGAAAAGCTTCATACTAG 58.543 33.333 16.77 0.00 45.70 2.57
408 409 8.239998 GCATTTCTTGAAAAGCTTCATACTAGT 58.760 33.333 13.77 0.00 45.70 2.57
412 413 7.584987 TCTTGAAAAGCTTCATACTAGTTTGC 58.415 34.615 0.00 0.00 45.70 3.68
413 414 6.875948 TGAAAAGCTTCATACTAGTTTGCA 57.124 33.333 0.00 0.00 36.62 4.08
415 416 4.954092 AAGCTTCATACTAGTTTGCAGC 57.046 40.909 23.31 23.31 32.95 5.25
416 417 2.932614 AGCTTCATACTAGTTTGCAGCG 59.067 45.455 23.98 8.58 36.37 5.18
417 418 2.030946 GCTTCATACTAGTTTGCAGCGG 59.969 50.000 18.54 4.99 0.00 5.52
419 420 3.328382 TCATACTAGTTTGCAGCGGTT 57.672 42.857 0.00 0.00 0.00 4.44
420 421 3.670625 TCATACTAGTTTGCAGCGGTTT 58.329 40.909 0.00 0.00 0.00 3.27
421 422 3.682858 TCATACTAGTTTGCAGCGGTTTC 59.317 43.478 0.00 0.00 0.00 2.78
434 435 1.292061 CGGTTTCCGTTGTGTTCTCA 58.708 50.000 0.00 0.00 42.73 3.27
435 436 1.871039 CGGTTTCCGTTGTGTTCTCAT 59.129 47.619 0.00 0.00 42.73 2.90
436 437 2.289547 CGGTTTCCGTTGTGTTCTCATT 59.710 45.455 0.00 0.00 42.73 2.57
532 655 0.391661 TTAGAGGAAGCTGCTTGGCG 60.392 55.000 21.25 0.00 37.29 5.69
608 746 5.754782 TCCAGTGCCAGTGAATATAAATGT 58.245 37.500 0.00 0.00 0.00 2.71
617 755 5.007626 CAGTGAATATAAATGTGACCCACCG 59.992 44.000 0.00 0.00 32.73 4.94
631 769 0.107993 CCACCGAGAGCACATGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
632 770 1.136891 CCACCGAGAGCACATGTCATA 59.863 52.381 0.00 0.00 0.00 2.15
636 774 5.049828 CACCGAGAGCACATGTCATAAATA 58.950 41.667 0.00 0.00 0.00 1.40
637 775 5.698089 CACCGAGAGCACATGTCATAAATAT 59.302 40.000 0.00 0.00 0.00 1.28
729 924 5.964958 ATATTTGACCAACACAAGTCCTG 57.035 39.130 0.00 0.00 31.76 3.86
756 951 7.975866 AACGAATCACATTTGCAATCTAATC 57.024 32.000 0.00 0.00 0.00 1.75
765 960 5.441718 TTTGCAATCTAATCAGAGGGAGT 57.558 39.130 0.00 0.00 33.22 3.85
767 962 5.798125 TGCAATCTAATCAGAGGGAGTAG 57.202 43.478 0.00 0.00 43.76 2.57
853 1407 2.226437 ACGCAAAGCCACAACTATCTTG 59.774 45.455 0.00 0.00 0.00 3.02
854 1408 2.599659 GCAAAGCCACAACTATCTTGC 58.400 47.619 0.00 0.00 0.00 4.01
857 1411 0.995024 AGCCACAACTATCTTGCCCT 59.005 50.000 0.00 0.00 0.00 5.19
858 1412 2.196595 AGCCACAACTATCTTGCCCTA 58.803 47.619 0.00 0.00 0.00 3.53
859 1413 2.576191 AGCCACAACTATCTTGCCCTAA 59.424 45.455 0.00 0.00 0.00 2.69
860 1414 2.683362 GCCACAACTATCTTGCCCTAAC 59.317 50.000 0.00 0.00 0.00 2.34
861 1415 3.872240 GCCACAACTATCTTGCCCTAACA 60.872 47.826 0.00 0.00 0.00 2.41
862 1416 4.526970 CCACAACTATCTTGCCCTAACAT 58.473 43.478 0.00 0.00 0.00 2.71
863 1417 5.680619 CCACAACTATCTTGCCCTAACATA 58.319 41.667 0.00 0.00 0.00 2.29
864 1418 6.299141 CCACAACTATCTTGCCCTAACATAT 58.701 40.000 0.00 0.00 0.00 1.78
865 1419 6.428159 CCACAACTATCTTGCCCTAACATATC 59.572 42.308 0.00 0.00 0.00 1.63
866 1420 7.220030 CACAACTATCTTGCCCTAACATATCT 58.780 38.462 0.00 0.00 0.00 1.98
867 1421 7.716998 CACAACTATCTTGCCCTAACATATCTT 59.283 37.037 0.00 0.00 0.00 2.40
868 1422 8.275040 ACAACTATCTTGCCCTAACATATCTTT 58.725 33.333 0.00 0.00 0.00 2.52
869 1423 9.125026 CAACTATCTTGCCCTAACATATCTTTT 57.875 33.333 0.00 0.00 0.00 2.27
870 1424 8.910351 ACTATCTTGCCCTAACATATCTTTTC 57.090 34.615 0.00 0.00 0.00 2.29
871 1425 7.939588 ACTATCTTGCCCTAACATATCTTTTCC 59.060 37.037 0.00 0.00 0.00 3.13
872 1426 5.445964 TCTTGCCCTAACATATCTTTTCCC 58.554 41.667 0.00 0.00 0.00 3.97
873 1427 4.178956 TGCCCTAACATATCTTTTCCCC 57.821 45.455 0.00 0.00 0.00 4.81
885 1439 1.906105 TTTTCCCCTGATCCCGTCGG 61.906 60.000 3.60 3.60 0.00 4.79
901 1455 2.094390 CGTCGGTAATCTCCCTTTGTGA 60.094 50.000 0.00 0.00 0.00 3.58
953 1508 1.595882 CCTGCTGACTCTCCACTGG 59.404 63.158 0.00 0.00 0.00 4.00
958 1513 2.997897 GACTCTCCACTGGCCCGT 60.998 66.667 0.00 0.00 0.00 5.28
1061 1641 2.607134 AGTGCTGCTCCCTCTGCT 60.607 61.111 0.00 0.00 32.95 4.24
1071 1651 0.033405 TCCCTCTGCTACCTACGCTT 60.033 55.000 0.00 0.00 0.00 4.68
1077 1657 3.846360 TCTGCTACCTACGCTTTTCTTC 58.154 45.455 0.00 0.00 0.00 2.87
1079 1659 3.994392 CTGCTACCTACGCTTTTCTTCAA 59.006 43.478 0.00 0.00 0.00 2.69
1083 1663 5.049612 GCTACCTACGCTTTTCTTCAACTTT 60.050 40.000 0.00 0.00 0.00 2.66
1087 1667 5.851703 CCTACGCTTTTCTTCAACTTTTAGC 59.148 40.000 0.00 0.00 0.00 3.09
1088 1668 4.607955 ACGCTTTTCTTCAACTTTTAGCC 58.392 39.130 0.00 0.00 0.00 3.93
1089 1669 3.664025 CGCTTTTCTTCAACTTTTAGCCG 59.336 43.478 0.00 0.00 0.00 5.52
1090 1670 3.425525 GCTTTTCTTCAACTTTTAGCCGC 59.574 43.478 0.00 0.00 0.00 6.53
1115 1695 1.766461 CCCCCGTAGCTTCCTCCAT 60.766 63.158 0.00 0.00 0.00 3.41
1123 1703 0.692419 AGCTTCCTCCATGGATCCGT 60.692 55.000 16.63 3.27 45.68 4.69
1145 1725 0.455815 TAAATGCAGAGCGAGCTCGA 59.544 50.000 38.74 17.88 46.90 4.04
1146 1726 0.805322 AAATGCAGAGCGAGCTCGAG 60.805 55.000 38.74 23.79 46.90 4.04
1183 1763 2.281484 GGTCCGGTCTGCTGCAAA 60.281 61.111 3.02 0.00 0.00 3.68
1184 1764 2.328099 GGTCCGGTCTGCTGCAAAG 61.328 63.158 3.02 0.00 0.00 2.77
1185 1765 2.669569 TCCGGTCTGCTGCAAAGC 60.670 61.111 3.02 0.00 0.00 3.51
1203 1804 2.028130 AGCGTAATCTGGGTCTCTGAG 58.972 52.381 0.00 0.00 0.00 3.35
1216 1817 0.653636 CTCTGAGTACGCTCTCCGAC 59.346 60.000 0.00 0.00 42.13 4.79
1222 1823 0.099082 GTACGCTCTCCGACTCCTTG 59.901 60.000 0.00 0.00 41.02 3.61
1317 1947 0.737715 GCTACAAGCAGGACTGGACG 60.738 60.000 1.01 0.00 41.89 4.79
1329 1959 3.672295 CTGGACGGGAGGCTTCAGC 62.672 68.421 0.00 0.00 38.60 4.26
1366 1996 1.986575 GCGCATCTGCCTTGTTCTCC 61.987 60.000 0.30 0.00 37.91 3.71
1416 2047 2.372264 TCTTGGAATGATGAAGCTGCC 58.628 47.619 0.00 0.00 0.00 4.85
1572 2574 6.423604 CCTTTGTGTTTTGAGTTCTGTTTTGT 59.576 34.615 0.00 0.00 0.00 2.83
1609 2611 3.473923 TCAGTGCATTTGAGTGAGTGA 57.526 42.857 0.00 0.00 0.00 3.41
1672 2674 2.187946 GCAGATGGGGTCCTCACG 59.812 66.667 0.00 0.00 0.00 4.35
1780 2782 2.891580 AGAGCCGACCGTCATAATGTAT 59.108 45.455 0.00 0.00 0.00 2.29
1783 2785 3.057033 AGCCGACCGTCATAATGTATACC 60.057 47.826 0.00 0.00 0.00 2.73
2074 3082 3.074369 TTCGGGCTCCTCATCGCA 61.074 61.111 0.00 0.00 0.00 5.10
2122 3131 2.669240 GGTACACACCAGGGCCTC 59.331 66.667 0.95 0.00 45.04 4.70
2125 3134 0.321653 GTACACACCAGGGCCTCTTG 60.322 60.000 0.95 6.17 0.00 3.02
2187 3196 7.755591 TGATGCAGAAAGTTATCAAGACATTC 58.244 34.615 0.00 0.00 0.00 2.67
2202 3211 5.695851 AGACATTCTGTTGATGTTGGTTC 57.304 39.130 0.00 0.00 0.00 3.62
2204 3213 3.882888 ACATTCTGTTGATGTTGGTTCGT 59.117 39.130 0.00 0.00 0.00 3.85
2240 3250 1.271325 TGTGGTATGAACCTGGTGCAG 60.271 52.381 14.03 0.00 46.91 4.41
2268 3278 6.766467 CACAAAGTACCCTTCTAAGAGTTGTT 59.234 38.462 0.00 0.00 0.00 2.83
2276 3286 6.015265 ACCCTTCTAAGAGTTGTTCACTACTC 60.015 42.308 12.09 12.09 44.98 2.59
2360 3370 1.426598 CATGGAGGCTAATGGGGATGT 59.573 52.381 0.00 0.00 0.00 3.06
2422 3432 3.181467 TGCTCCAACCAAATGTTTCCTTG 60.181 43.478 0.00 0.00 34.00 3.61
2553 3563 5.065235 TCTGAGATGAATGTGCAAACTGAA 58.935 37.500 0.00 0.00 0.00 3.02
2707 3718 2.136196 TTGCCAACGGAATGTTCGCC 62.136 55.000 0.00 0.00 43.16 5.54
2814 3825 1.453155 AAATTGTAGCTGGTCCTGCG 58.547 50.000 14.44 0.00 33.59 5.18
2815 3826 0.392998 AATTGTAGCTGGTCCTGCGG 60.393 55.000 14.44 0.00 33.59 5.69
2816 3827 2.876368 ATTGTAGCTGGTCCTGCGGC 62.876 60.000 14.44 11.65 33.59 6.53
2834 3845 3.608707 GCGGCAGATGCTATGAGAATTTG 60.609 47.826 4.59 0.00 41.70 2.32
2872 3883 3.751518 TCCACTTTCTTTGCTTCCTACC 58.248 45.455 0.00 0.00 0.00 3.18
2874 3885 4.082125 CCACTTTCTTTGCTTCCTACCAT 58.918 43.478 0.00 0.00 0.00 3.55
2880 3891 6.569179 TTCTTTGCTTCCTACCATTGTTAC 57.431 37.500 0.00 0.00 0.00 2.50
3001 4012 0.472471 TGGTGTGGACAGGAGTTTCC 59.528 55.000 0.00 0.00 36.58 3.13
3175 4186 2.641305 AGCCATCAGAGCTCATCAAAC 58.359 47.619 17.77 0.88 34.91 2.93
3199 4210 3.281727 TCCAATACCATTGAGCAGGAC 57.718 47.619 0.46 0.00 0.00 3.85
3414 4425 6.166982 ACTCTGGCTAGTAACTTCAACATTC 58.833 40.000 0.00 0.00 0.00 2.67
3423 4434 9.745880 CTAGTAACTTCAACATTCGGTATATGT 57.254 33.333 0.00 0.00 37.82 2.29
3458 4469 8.781067 TTTCAATGTAATTTCTTGAACAGACG 57.219 30.769 8.44 0.00 38.30 4.18
3473 4484 0.603707 AGACGTTGATGTGTGGCCTG 60.604 55.000 3.32 0.00 0.00 4.85
3560 4571 6.909550 ACTCTAAAGCATCAGGTAGGATAG 57.090 41.667 0.00 0.00 0.00 2.08
3584 4595 5.353678 GGAGGAATGTTCTGAACTTCTGATG 59.646 44.000 20.18 0.00 0.00 3.07
3765 4776 1.877680 CGCTGATCCACCAACAACAGA 60.878 52.381 0.00 0.00 0.00 3.41
3814 4830 8.939586 ATTGAAATTAATTGATCGCAGTATCG 57.060 30.769 0.39 0.00 0.00 2.92
4093 5109 3.840666 TGAAGAAGATCCCTACAGCAGTT 59.159 43.478 0.00 0.00 0.00 3.16
4223 5239 9.832445 AAGTTTCACTAGTTTCATTACTCTGAA 57.168 29.630 0.00 0.00 33.42 3.02
4224 5240 9.262358 AGTTTCACTAGTTTCATTACTCTGAAC 57.738 33.333 0.00 0.00 34.96 3.18
4434 5465 4.894784 ACCATACAACATTTGTCGAGACT 58.105 39.130 4.78 0.00 44.12 3.24
4572 5603 0.685097 TGGTTCCAGTCAGGCAGTAC 59.315 55.000 0.00 0.00 37.29 2.73
4705 5736 2.848679 TGTCCTGACAGGCAGCCA 60.849 61.111 17.33 7.64 43.50 4.75
4744 5775 6.258160 CCATTTTCTAACGTTTAGCTGATGG 58.742 40.000 5.91 10.06 0.00 3.51
4868 5899 1.044611 TCCTTGACGACATGGTCACA 58.955 50.000 16.89 0.00 45.97 3.58
4916 5947 4.023980 TGAATAGTCCGAAGATCACCAGT 58.976 43.478 0.00 0.00 0.00 4.00
4958 5989 1.589716 AACTGAAAGGCATCCGCAGC 61.590 55.000 0.00 0.00 41.24 5.25
4967 5998 1.789078 GCATCCGCAGCCCTTGTATG 61.789 60.000 0.00 0.00 38.36 2.39
4996 6027 2.571757 CTACAGCCCTCGCGTCAA 59.428 61.111 5.77 0.00 41.18 3.18
5047 6078 2.711922 GGCGAGACAGTCCACGGAT 61.712 63.158 16.11 0.00 0.00 4.18
5398 6440 9.974750 GTCTCACTTTTCTATATTACTGCAAAC 57.025 33.333 0.00 0.00 0.00 2.93
5552 6603 4.083110 CCCTTCTGAGTACTGCACATTTTG 60.083 45.833 0.00 0.00 0.00 2.44
5570 6621 8.239998 CACATTTTGTTGTTGGTTAAAATGGTT 58.760 29.630 19.29 3.63 46.70 3.67
5571 6622 8.797438 ACATTTTGTTGTTGGTTAAAATGGTTT 58.203 25.926 19.29 3.10 46.70 3.27
5599 6650 4.816385 TGACAGGCTCAAGTCTTTAACAAG 59.184 41.667 5.24 0.00 35.81 3.16
5685 6737 1.062525 GAATTGCCACGACGATGCC 59.937 57.895 0.00 0.00 0.00 4.40
5686 6738 1.369091 GAATTGCCACGACGATGCCT 61.369 55.000 0.00 0.00 0.00 4.75
5687 6739 1.369091 AATTGCCACGACGATGCCTC 61.369 55.000 0.00 0.00 0.00 4.70
5704 6784 1.339055 CCTCGAGTCCCATGCTTCAAA 60.339 52.381 12.31 0.00 0.00 2.69
5740 6821 6.840780 ACCAGCTTACTTTAGAATGCAAAT 57.159 33.333 0.00 0.00 0.00 2.32
5754 6835 4.853924 ATGCAAATTTCTTCCGAAGTGT 57.146 36.364 8.01 0.00 0.00 3.55
5756 6837 3.882888 TGCAAATTTCTTCCGAAGTGTCT 59.117 39.130 8.01 0.00 0.00 3.41
5761 6842 3.447918 TTCTTCCGAAGTGTCTCGTTT 57.552 42.857 8.01 0.00 37.11 3.60
5963 7057 2.961741 CTGAGCCTATTGGTAGAGCAGA 59.038 50.000 0.00 0.00 35.27 4.26
6075 7181 1.096416 ACTACCGAGTACAGCTGCTC 58.904 55.000 15.27 12.34 32.65 4.26
6134 7240 3.462579 AGAGGGAAAGATGCCAAGATCAT 59.537 43.478 0.00 0.00 40.09 2.45
6135 7241 4.662179 AGAGGGAAAGATGCCAAGATCATA 59.338 41.667 0.00 0.00 40.09 2.15
6136 7242 5.312708 AGAGGGAAAGATGCCAAGATCATAT 59.687 40.000 0.00 0.00 40.09 1.78
6137 7243 5.961897 AGGGAAAGATGCCAAGATCATATT 58.038 37.500 0.00 0.00 40.09 1.28
6138 7244 6.379579 AGGGAAAGATGCCAAGATCATATTT 58.620 36.000 0.00 0.00 40.09 1.40
6139 7245 6.267014 AGGGAAAGATGCCAAGATCATATTTG 59.733 38.462 0.00 0.00 40.09 2.32
6140 7246 5.924825 GGAAAGATGCCAAGATCATATTTGC 59.075 40.000 0.00 0.74 36.04 3.68
6141 7247 6.239232 GGAAAGATGCCAAGATCATATTTGCT 60.239 38.462 0.00 0.00 39.07 3.91
6142 7248 5.707242 AGATGCCAAGATCATATTTGCTG 57.293 39.130 0.00 0.00 0.00 4.41
6143 7249 3.720949 TGCCAAGATCATATTTGCTGC 57.279 42.857 0.00 0.00 0.00 5.25
6144 7250 3.025262 TGCCAAGATCATATTTGCTGCA 58.975 40.909 0.00 0.00 0.00 4.41
6145 7251 3.067601 TGCCAAGATCATATTTGCTGCAG 59.932 43.478 10.11 10.11 0.00 4.41
6146 7252 3.067742 GCCAAGATCATATTTGCTGCAGT 59.932 43.478 16.64 0.00 0.00 4.40
6147 7253 4.276678 GCCAAGATCATATTTGCTGCAGTA 59.723 41.667 16.64 8.31 0.00 2.74
6148 7254 5.562307 GCCAAGATCATATTTGCTGCAGTAG 60.562 44.000 16.64 0.00 0.00 2.57
6149 7255 5.048921 CCAAGATCATATTTGCTGCAGTAGG 60.049 44.000 16.64 1.27 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.984109 CATCACGAAAATTGGCACGC 59.016 50.000 0.00 0.00 0.00 5.34
1 2 2.610219 TCATCACGAAAATTGGCACG 57.390 45.000 0.00 0.00 0.00 5.34
2 3 4.922692 TCATTTCATCACGAAAATTGGCAC 59.077 37.500 0.00 0.00 46.48 5.01
3 4 4.922692 GTCATTTCATCACGAAAATTGGCA 59.077 37.500 0.00 0.00 46.48 4.92
4 5 4.922692 TGTCATTTCATCACGAAAATTGGC 59.077 37.500 0.00 0.00 46.48 4.52
5 6 7.585286 AATGTCATTTCATCACGAAAATTGG 57.415 32.000 0.00 0.00 46.48 3.16
6 7 8.489559 ACAAATGTCATTTCATCACGAAAATTG 58.510 29.630 7.87 0.00 46.48 2.32
7 8 8.489559 CACAAATGTCATTTCATCACGAAAATT 58.510 29.630 7.87 0.00 46.48 1.82
8 9 7.116662 CCACAAATGTCATTTCATCACGAAAAT 59.883 33.333 7.87 0.00 46.48 1.82
9 10 6.420306 CCACAAATGTCATTTCATCACGAAAA 59.580 34.615 7.87 0.00 46.48 2.29
11 12 5.240403 TCCACAAATGTCATTTCATCACGAA 59.760 36.000 7.87 0.00 0.00 3.85
12 13 4.759183 TCCACAAATGTCATTTCATCACGA 59.241 37.500 7.87 0.00 0.00 4.35
13 14 5.045668 TCCACAAATGTCATTTCATCACG 57.954 39.130 7.87 0.00 0.00 4.35
14 15 5.047802 ACCTCCACAAATGTCATTTCATCAC 60.048 40.000 7.87 0.00 0.00 3.06
15 16 5.047872 CACCTCCACAAATGTCATTTCATCA 60.048 40.000 7.87 0.00 0.00 3.07
16 17 5.047802 ACACCTCCACAAATGTCATTTCATC 60.048 40.000 7.87 0.00 0.00 2.92
17 18 4.834496 ACACCTCCACAAATGTCATTTCAT 59.166 37.500 7.87 0.00 0.00 2.57
18 19 4.214310 ACACCTCCACAAATGTCATTTCA 58.786 39.130 7.87 0.00 0.00 2.69
19 20 4.278170 TGACACCTCCACAAATGTCATTTC 59.722 41.667 7.87 0.00 44.88 2.17
20 21 4.214310 TGACACCTCCACAAATGTCATTT 58.786 39.130 4.91 4.91 44.88 2.32
21 22 3.831323 TGACACCTCCACAAATGTCATT 58.169 40.909 1.91 0.00 44.88 2.57
22 23 3.507162 TGACACCTCCACAAATGTCAT 57.493 42.857 1.91 0.00 44.88 3.06
23 24 2.849942 CTGACACCTCCACAAATGTCA 58.150 47.619 5.84 5.84 46.92 3.58
24 25 1.537202 GCTGACACCTCCACAAATGTC 59.463 52.381 0.00 0.00 41.51 3.06
25 26 1.133823 TGCTGACACCTCCACAAATGT 60.134 47.619 0.00 0.00 0.00 2.71
26 27 1.608055 TGCTGACACCTCCACAAATG 58.392 50.000 0.00 0.00 0.00 2.32
27 28 2.363306 TTGCTGACACCTCCACAAAT 57.637 45.000 0.00 0.00 0.00 2.32
28 29 2.136298 TTTGCTGACACCTCCACAAA 57.864 45.000 0.00 0.00 0.00 2.83
29 30 2.136298 TTTTGCTGACACCTCCACAA 57.864 45.000 0.00 0.00 0.00 3.33
30 31 2.136298 TTTTTGCTGACACCTCCACA 57.864 45.000 0.00 0.00 0.00 4.17
70 71 7.040132 TCCAAAATGCTTCCAAAAACAGTTTTT 60.040 29.630 16.87 16.87 43.20 1.94
71 72 6.432472 TCCAAAATGCTTCCAAAAACAGTTTT 59.568 30.769 5.37 5.37 37.43 2.43
72 73 5.942826 TCCAAAATGCTTCCAAAAACAGTTT 59.057 32.000 0.00 0.00 31.13 2.66
73 74 5.495640 TCCAAAATGCTTCCAAAAACAGTT 58.504 33.333 0.00 0.00 0.00 3.16
74 75 5.096443 TCCAAAATGCTTCCAAAAACAGT 57.904 34.783 0.00 0.00 0.00 3.55
75 76 4.024641 GCTCCAAAATGCTTCCAAAAACAG 60.025 41.667 0.00 0.00 0.00 3.16
76 77 3.876320 GCTCCAAAATGCTTCCAAAAACA 59.124 39.130 0.00 0.00 0.00 2.83
77 78 3.876320 TGCTCCAAAATGCTTCCAAAAAC 59.124 39.130 0.00 0.00 0.00 2.43
78 79 4.148128 TGCTCCAAAATGCTTCCAAAAA 57.852 36.364 0.00 0.00 0.00 1.94
79 80 3.834489 TGCTCCAAAATGCTTCCAAAA 57.166 38.095 0.00 0.00 0.00 2.44
80 81 3.614630 CGATGCTCCAAAATGCTTCCAAA 60.615 43.478 0.00 0.00 32.10 3.28
81 82 2.094597 CGATGCTCCAAAATGCTTCCAA 60.095 45.455 0.00 0.00 32.10 3.53
82 83 1.473677 CGATGCTCCAAAATGCTTCCA 59.526 47.619 0.00 0.00 32.10 3.53
83 84 1.745087 TCGATGCTCCAAAATGCTTCC 59.255 47.619 0.00 0.00 32.10 3.46
84 85 3.705043 ATCGATGCTCCAAAATGCTTC 57.295 42.857 0.00 0.00 0.00 3.86
85 86 4.460948 AAATCGATGCTCCAAAATGCTT 57.539 36.364 0.00 0.00 0.00 3.91
86 87 4.178540 CAAAATCGATGCTCCAAAATGCT 58.821 39.130 0.00 0.00 0.00 3.79
87 88 3.928375 ACAAAATCGATGCTCCAAAATGC 59.072 39.130 0.00 0.00 0.00 3.56
88 89 6.470557 AAACAAAATCGATGCTCCAAAATG 57.529 33.333 0.00 0.00 0.00 2.32
89 90 7.495135 AAAAACAAAATCGATGCTCCAAAAT 57.505 28.000 0.00 0.00 0.00 1.82
90 91 6.917217 AAAAACAAAATCGATGCTCCAAAA 57.083 29.167 0.00 0.00 0.00 2.44
112 113 2.585330 TCATGCAGGTCTCAGCAAAAA 58.415 42.857 0.00 0.00 44.88 1.94
113 114 2.275134 TCATGCAGGTCTCAGCAAAA 57.725 45.000 0.00 0.00 44.88 2.44
114 115 2.275134 TTCATGCAGGTCTCAGCAAA 57.725 45.000 0.00 0.00 44.88 3.68
115 116 2.089201 CATTCATGCAGGTCTCAGCAA 58.911 47.619 0.00 0.00 44.88 3.91
116 117 1.003928 ACATTCATGCAGGTCTCAGCA 59.996 47.619 0.00 0.00 45.92 4.41
117 118 1.669779 GACATTCATGCAGGTCTCAGC 59.330 52.381 2.82 0.00 0.00 4.26
118 119 2.981898 TGACATTCATGCAGGTCTCAG 58.018 47.619 11.26 0.00 0.00 3.35
119 120 3.639672 ATGACATTCATGCAGGTCTCA 57.360 42.857 11.26 0.00 35.43 3.27
120 121 4.978083 AAATGACATTCATGCAGGTCTC 57.022 40.909 11.26 0.00 37.15 3.36
121 122 4.525487 ACAAAATGACATTCATGCAGGTCT 59.475 37.500 11.26 0.00 37.15 3.85
122 123 4.813027 ACAAAATGACATTCATGCAGGTC 58.187 39.130 3.09 3.09 37.15 3.85
123 124 4.281435 TGACAAAATGACATTCATGCAGGT 59.719 37.500 0.05 0.00 37.15 4.00
124 125 4.811908 TGACAAAATGACATTCATGCAGG 58.188 39.130 0.05 0.00 37.15 4.85
125 126 6.096695 TCATGACAAAATGACATTCATGCAG 58.903 36.000 17.52 2.00 42.15 4.41
126 127 6.026947 TCATGACAAAATGACATTCATGCA 57.973 33.333 17.52 13.69 42.15 3.96
127 128 6.954616 TTCATGACAAAATGACATTCATGC 57.045 33.333 17.52 10.10 42.15 4.06
134 135 8.750416 CGTACAAATTTTCATGACAAAATGACA 58.250 29.630 13.71 2.89 36.33 3.58
135 136 7.735586 GCGTACAAATTTTCATGACAAAATGAC 59.264 33.333 13.71 8.49 36.33 3.06
136 137 7.436376 TGCGTACAAATTTTCATGACAAAATGA 59.564 29.630 13.71 0.00 36.33 2.57
137 138 7.562412 TGCGTACAAATTTTCATGACAAAATG 58.438 30.769 6.20 7.13 36.33 2.32
138 139 7.706281 TGCGTACAAATTTTCATGACAAAAT 57.294 28.000 0.00 0.00 37.53 1.82
139 140 7.223582 ACATGCGTACAAATTTTCATGACAAAA 59.776 29.630 12.23 0.00 36.23 2.44
140 141 6.699204 ACATGCGTACAAATTTTCATGACAAA 59.301 30.769 12.23 0.11 36.23 2.83
141 142 6.143598 CACATGCGTACAAATTTTCATGACAA 59.856 34.615 12.23 0.00 36.23 3.18
142 143 5.628606 CACATGCGTACAAATTTTCATGACA 59.371 36.000 12.23 0.00 36.23 3.58
143 144 5.855925 TCACATGCGTACAAATTTTCATGAC 59.144 36.000 12.23 0.47 36.23 3.06
144 145 6.006759 TCACATGCGTACAAATTTTCATGA 57.993 33.333 12.23 0.00 36.23 3.07
145 146 6.687653 TTCACATGCGTACAAATTTTCATG 57.312 33.333 0.00 6.33 37.78 3.07
146 147 7.706281 TTTTCACATGCGTACAAATTTTCAT 57.294 28.000 0.00 0.00 0.00 2.57
147 148 7.525688 TTTTTCACATGCGTACAAATTTTCA 57.474 28.000 0.00 0.00 0.00 2.69
150 151 9.202273 ACATATTTTTCACATGCGTACAAATTT 57.798 25.926 0.00 0.00 0.00 1.82
151 152 8.755696 ACATATTTTTCACATGCGTACAAATT 57.244 26.923 0.00 0.00 0.00 1.82
152 153 8.026026 TGACATATTTTTCACATGCGTACAAAT 58.974 29.630 0.00 0.00 0.00 2.32
153 154 7.363431 TGACATATTTTTCACATGCGTACAAA 58.637 30.769 0.00 0.00 0.00 2.83
154 155 6.903419 TGACATATTTTTCACATGCGTACAA 58.097 32.000 0.00 0.00 0.00 2.41
155 156 6.487689 TGACATATTTTTCACATGCGTACA 57.512 33.333 0.00 0.00 0.00 2.90
156 157 7.484641 ACATTGACATATTTTTCACATGCGTAC 59.515 33.333 0.00 0.00 0.00 3.67
157 158 7.534282 ACATTGACATATTTTTCACATGCGTA 58.466 30.769 0.00 0.00 0.00 4.42
158 159 6.389091 ACATTGACATATTTTTCACATGCGT 58.611 32.000 0.00 0.00 0.00 5.24
159 160 6.874297 ACATTGACATATTTTTCACATGCG 57.126 33.333 0.00 0.00 0.00 4.73
160 161 8.497554 ACAAACATTGACATATTTTTCACATGC 58.502 29.630 0.00 0.00 0.00 4.06
163 164 8.333908 GCAACAAACATTGACATATTTTTCACA 58.666 29.630 0.00 0.00 0.00 3.58
164 165 7.798052 GGCAACAAACATTGACATATTTTTCAC 59.202 33.333 0.00 0.00 37.56 3.18
165 166 7.859598 GGCAACAAACATTGACATATTTTTCA 58.140 30.769 0.00 0.00 37.56 2.69
228 229 6.071278 ACCCTTTGCTACAGTACAAACAAAAA 60.071 34.615 0.00 0.00 32.60 1.94
229 230 5.419471 ACCCTTTGCTACAGTACAAACAAAA 59.581 36.000 0.00 0.00 32.60 2.44
230 231 4.951094 ACCCTTTGCTACAGTACAAACAAA 59.049 37.500 0.00 0.00 32.60 2.83
231 232 4.336993 CACCCTTTGCTACAGTACAAACAA 59.663 41.667 0.00 0.00 32.60 2.83
232 233 3.880490 CACCCTTTGCTACAGTACAAACA 59.120 43.478 0.00 0.00 32.60 2.83
233 234 4.483476 CACCCTTTGCTACAGTACAAAC 57.517 45.455 0.00 0.00 32.60 2.93
246 247 1.228367 AGCTCACAGGCACCCTTTG 60.228 57.895 0.00 0.00 33.03 2.77
247 248 1.073897 GAGCTCACAGGCACCCTTT 59.926 57.895 9.40 0.00 34.17 3.11
248 249 2.753029 GAGCTCACAGGCACCCTT 59.247 61.111 9.40 0.00 34.17 3.95
249 250 3.699894 CGAGCTCACAGGCACCCT 61.700 66.667 15.40 0.00 34.17 4.34
250 251 3.655810 CTCGAGCTCACAGGCACCC 62.656 68.421 15.40 0.00 34.17 4.61
251 252 2.125753 CTCGAGCTCACAGGCACC 60.126 66.667 15.40 0.00 34.17 5.01
252 253 2.813042 GCTCGAGCTCACAGGCAC 60.813 66.667 29.88 0.00 38.21 5.01
262 263 0.926846 GTGCTATTGTGAGCTCGAGC 59.073 55.000 30.01 30.01 43.27 5.03
263 264 2.575694 AGTGCTATTGTGAGCTCGAG 57.424 50.000 8.45 8.45 43.27 4.04
264 265 3.254060 GAAAGTGCTATTGTGAGCTCGA 58.746 45.455 9.64 0.00 43.27 4.04
265 266 2.028523 CGAAAGTGCTATTGTGAGCTCG 59.971 50.000 9.64 0.00 43.27 5.03
266 267 2.349886 CCGAAAGTGCTATTGTGAGCTC 59.650 50.000 6.82 6.82 43.27 4.09
267 268 2.350522 CCGAAAGTGCTATTGTGAGCT 58.649 47.619 0.00 0.00 43.27 4.09
268 269 1.202076 GCCGAAAGTGCTATTGTGAGC 60.202 52.381 0.00 0.00 43.16 4.26
269 270 2.350522 AGCCGAAAGTGCTATTGTGAG 58.649 47.619 0.00 0.00 36.17 3.51
270 271 2.472695 AGCCGAAAGTGCTATTGTGA 57.527 45.000 0.00 0.00 36.17 3.58
271 272 3.559238 AAAGCCGAAAGTGCTATTGTG 57.441 42.857 0.00 0.00 36.77 3.33
272 273 3.821033 AGAAAAGCCGAAAGTGCTATTGT 59.179 39.130 0.00 0.00 36.77 2.71
273 274 4.425577 AGAAAAGCCGAAAGTGCTATTG 57.574 40.909 0.00 0.00 36.77 1.90
274 275 5.001232 TGTAGAAAAGCCGAAAGTGCTATT 58.999 37.500 0.00 0.00 36.77 1.73
275 276 4.575885 TGTAGAAAAGCCGAAAGTGCTAT 58.424 39.130 0.00 0.00 36.77 2.97
276 277 3.994392 CTGTAGAAAAGCCGAAAGTGCTA 59.006 43.478 0.00 0.00 36.77 3.49
277 278 2.808543 CTGTAGAAAAGCCGAAAGTGCT 59.191 45.455 0.00 0.00 38.90 4.40
278 279 2.806244 TCTGTAGAAAAGCCGAAAGTGC 59.194 45.455 0.00 0.00 0.00 4.40
279 280 6.590292 TCTTATCTGTAGAAAAGCCGAAAGTG 59.410 38.462 0.00 0.00 0.00 3.16
280 281 6.698380 TCTTATCTGTAGAAAAGCCGAAAGT 58.302 36.000 0.00 0.00 0.00 2.66
281 282 7.596749 TTCTTATCTGTAGAAAAGCCGAAAG 57.403 36.000 0.00 0.00 0.00 2.62
282 283 7.972832 TTTCTTATCTGTAGAAAAGCCGAAA 57.027 32.000 0.00 0.00 38.35 3.46
283 284 7.972832 TTTTCTTATCTGTAGAAAAGCCGAA 57.027 32.000 6.66 0.00 43.17 4.30
368 369 7.137490 TCAAGAAATGCTAATCAGTGTGAAG 57.863 36.000 0.00 0.00 0.00 3.02
388 389 7.362662 TGCAAACTAGTATGAAGCTTTTCAAG 58.637 34.615 0.00 0.00 34.24 3.02
404 405 0.165944 CGGAAACCGCTGCAAACTAG 59.834 55.000 0.00 0.00 41.17 2.57
406 407 3.030652 CGGAAACCGCTGCAAACT 58.969 55.556 0.00 0.00 41.17 2.66
416 417 3.982576 AATGAGAACACAACGGAAACC 57.017 42.857 0.00 0.00 0.00 3.27
417 418 5.169836 AGAAATGAGAACACAACGGAAAC 57.830 39.130 0.00 0.00 0.00 2.78
419 420 4.447290 TGAGAAATGAGAACACAACGGAA 58.553 39.130 0.00 0.00 0.00 4.30
420 421 4.058124 CTGAGAAATGAGAACACAACGGA 58.942 43.478 0.00 0.00 0.00 4.69
421 422 3.187227 CCTGAGAAATGAGAACACAACGG 59.813 47.826 0.00 0.00 0.00 4.44
540 663 4.803426 GCTGTCCGTCTGGCCGAG 62.803 72.222 0.00 0.00 34.14 4.63
608 746 1.913262 ATGTGCTCTCGGTGGGTCA 60.913 57.895 0.00 0.00 0.00 4.02
617 755 8.288208 CCAGAAATATTTATGACATGTGCTCTC 58.712 37.037 21.51 0.00 31.34 3.20
659 854 8.533657 TGGGAAAGATGTTACTAAGACGATAAA 58.466 33.333 0.00 0.00 0.00 1.40
670 865 3.333680 ACCACCATGGGAAAGATGTTACT 59.666 43.478 18.09 0.00 43.37 2.24
678 873 3.433306 TTGACTACCACCATGGGAAAG 57.567 47.619 18.09 10.16 43.37 2.62
729 924 6.695292 AGATTGCAAATGTGATTCGTTTTC 57.305 33.333 1.71 0.00 33.54 2.29
756 951 1.110442 CCTGACTGCTACTCCCTCTG 58.890 60.000 0.00 0.00 0.00 3.35
765 960 0.034380 ACGGTAGAGCCTGACTGCTA 60.034 55.000 0.00 0.00 42.95 3.49
767 962 1.139947 GACGGTAGAGCCTGACTGC 59.860 63.158 0.00 0.00 34.25 4.40
853 1407 4.141251 TCAGGGGAAAAGATATGTTAGGGC 60.141 45.833 0.00 0.00 0.00 5.19
854 1408 5.646692 TCAGGGGAAAAGATATGTTAGGG 57.353 43.478 0.00 0.00 0.00 3.53
857 1411 5.221843 CGGGATCAGGGGAAAAGATATGTTA 60.222 44.000 0.00 0.00 0.00 2.41
858 1412 4.446311 CGGGATCAGGGGAAAAGATATGTT 60.446 45.833 0.00 0.00 0.00 2.71
859 1413 3.073062 CGGGATCAGGGGAAAAGATATGT 59.927 47.826 0.00 0.00 0.00 2.29
860 1414 3.073062 ACGGGATCAGGGGAAAAGATATG 59.927 47.826 0.00 0.00 0.00 1.78
861 1415 3.327439 ACGGGATCAGGGGAAAAGATAT 58.673 45.455 0.00 0.00 0.00 1.63
862 1416 2.704065 GACGGGATCAGGGGAAAAGATA 59.296 50.000 0.00 0.00 0.00 1.98
863 1417 1.490910 GACGGGATCAGGGGAAAAGAT 59.509 52.381 0.00 0.00 0.00 2.40
864 1418 0.909623 GACGGGATCAGGGGAAAAGA 59.090 55.000 0.00 0.00 0.00 2.52
865 1419 0.462047 CGACGGGATCAGGGGAAAAG 60.462 60.000 0.00 0.00 0.00 2.27
866 1420 1.600107 CGACGGGATCAGGGGAAAA 59.400 57.895 0.00 0.00 0.00 2.29
867 1421 2.363975 CCGACGGGATCAGGGGAAA 61.364 63.158 5.81 0.00 34.06 3.13
868 1422 2.227494 TACCGACGGGATCAGGGGAA 62.227 60.000 20.00 0.00 36.97 3.97
869 1423 2.227494 TTACCGACGGGATCAGGGGA 62.227 60.000 20.00 0.00 36.97 4.81
870 1424 1.119574 ATTACCGACGGGATCAGGGG 61.120 60.000 20.00 0.00 36.97 4.79
871 1425 0.317479 GATTACCGACGGGATCAGGG 59.683 60.000 20.00 0.00 36.97 4.45
872 1426 1.269998 GAGATTACCGACGGGATCAGG 59.730 57.143 25.10 0.33 36.97 3.86
873 1427 1.269998 GGAGATTACCGACGGGATCAG 59.730 57.143 25.10 0.97 36.97 2.90
885 1439 4.553330 TCCTGTCACAAAGGGAGATTAC 57.447 45.455 0.00 0.00 35.35 1.89
953 1508 1.132643 CGGCTATATAGACAGACGGGC 59.867 57.143 15.97 0.00 39.68 6.13
958 1513 4.912317 AGAGGACGGCTATATAGACAGA 57.088 45.455 15.97 0.00 0.00 3.41
1061 1641 6.930667 AAAAGTTGAAGAAAAGCGTAGGTA 57.069 33.333 0.00 0.00 37.06 3.08
1071 1651 2.295070 GGGCGGCTAAAAGTTGAAGAAA 59.705 45.455 9.56 0.00 0.00 2.52
1077 1657 0.243636 CCAAGGGCGGCTAAAAGTTG 59.756 55.000 9.56 3.64 0.00 3.16
1079 1659 4.415783 CCAAGGGCGGCTAAAAGT 57.584 55.556 9.56 0.00 0.00 2.66
1145 1725 0.452585 GGAGAAACGCTACGAGCTCT 59.547 55.000 12.85 1.42 39.60 4.09
1146 1726 0.525882 GGGAGAAACGCTACGAGCTC 60.526 60.000 2.73 2.73 39.60 4.09
1183 1763 2.028130 CTCAGAGACCCAGATTACGCT 58.972 52.381 0.00 0.00 0.00 5.07
1184 1764 1.751924 ACTCAGAGACCCAGATTACGC 59.248 52.381 3.79 0.00 0.00 4.42
1185 1765 3.002451 CGTACTCAGAGACCCAGATTACG 59.998 52.174 3.79 1.59 35.60 3.18
1203 1804 0.099082 CAAGGAGTCGGAGAGCGTAC 59.901 60.000 0.00 0.00 36.95 3.67
1216 1817 0.685097 TCCTCGGAAACACCAAGGAG 59.315 55.000 0.00 0.00 46.02 3.69
1222 1823 2.084546 CTCCATTTCCTCGGAAACACC 58.915 52.381 12.96 0.00 45.34 4.16
1329 1959 2.333938 CCGTACCTGATACCGGCG 59.666 66.667 0.00 0.00 0.00 6.46
1424 2055 2.154462 CCAGGATCCTGAAACACACAC 58.846 52.381 38.37 0.00 46.30 3.82
1538 2169 6.389906 ACTCAAAACACAAAGGAAACAGAAG 58.610 36.000 0.00 0.00 0.00 2.85
1540 2171 5.975693 ACTCAAAACACAAAGGAAACAGA 57.024 34.783 0.00 0.00 0.00 3.41
1609 2611 0.110104 AGCAAGCAAGCTTCTCTGGT 59.890 50.000 3.97 0.00 43.70 4.00
1672 2674 1.601419 ATGCCAATGTCTGCACTGCC 61.601 55.000 0.00 0.00 40.88 4.85
1768 2770 8.587952 TGAACATGAAGGTATACATTATGACG 57.412 34.615 18.19 5.48 0.00 4.35
1932 2934 2.564062 CACATCCATGGCTTCAAAACCT 59.436 45.455 6.96 0.00 0.00 3.50
2074 3082 1.135083 GCTTGCTGCATGAAGAGCATT 60.135 47.619 18.44 0.00 44.51 3.56
2122 3131 4.549458 CAAATAAGCAAGGACACCACAAG 58.451 43.478 0.00 0.00 0.00 3.16
2125 3134 2.352715 GCCAAATAAGCAAGGACACCAC 60.353 50.000 0.00 0.00 0.00 4.16
2187 3196 4.920376 AGAAAACGAACCAACATCAACAG 58.080 39.130 0.00 0.00 0.00 3.16
2202 3211 4.202010 ACCACATTCACCTCAAAGAAAACG 60.202 41.667 0.00 0.00 0.00 3.60
2204 3213 6.775142 TCATACCACATTCACCTCAAAGAAAA 59.225 34.615 0.00 0.00 0.00 2.29
2240 3250 6.522946 ACTCTTAGAAGGGTACTTTGTGTTC 58.477 40.000 0.00 0.00 38.15 3.18
2268 3278 6.989759 CAGATAGAGCTTGACTAGAGTAGTGA 59.010 42.308 0.00 0.00 39.59 3.41
2276 3286 4.099266 AGTTGGCAGATAGAGCTTGACTAG 59.901 45.833 0.00 0.00 0.00 2.57
2360 3370 2.361757 CACTGAATGTGCAGTTTTGGGA 59.638 45.455 0.00 0.00 46.42 4.37
2364 3374 5.526115 CAGAATCACTGAATGTGCAGTTTT 58.474 37.500 0.00 0.00 46.42 2.43
2385 3395 0.389426 GAGCAATGGCCAAACAGCAG 60.389 55.000 10.96 0.00 42.56 4.24
2422 3432 6.566753 GCCAAAGCATATTCGAGATTTAGGAC 60.567 42.308 0.00 0.00 39.53 3.85
2538 3548 4.274459 ACAGAGAGTTCAGTTTGCACATTC 59.726 41.667 0.00 0.00 0.00 2.67
2553 3563 8.289939 TGGAACGTCTATTAAATACAGAGAGT 57.710 34.615 0.00 0.00 0.00 3.24
2707 3718 1.541147 AGGCCAAATGACAACACGATG 59.459 47.619 5.01 0.00 0.00 3.84
2814 3825 3.568853 AGCAAATTCTCATAGCATCTGCC 59.431 43.478 0.00 0.00 43.38 4.85
2815 3826 4.832590 AGCAAATTCTCATAGCATCTGC 57.167 40.909 0.00 0.00 42.49 4.26
2816 3827 4.976731 GCAAGCAAATTCTCATAGCATCTG 59.023 41.667 0.00 0.00 0.00 2.90
2834 3845 0.106521 GGAGGAGATCTGAGGCAAGC 59.893 60.000 0.00 0.00 0.00 4.01
2872 3883 2.594529 AACTGAAGCGCGTAACAATG 57.405 45.000 8.43 0.00 0.00 2.82
2874 3885 2.221517 GGTTAACTGAAGCGCGTAACAA 59.778 45.455 8.43 0.00 0.00 2.83
2880 3891 0.110373 GTTGGGTTAACTGAAGCGCG 60.110 55.000 0.00 0.00 36.33 6.86
3156 4167 1.329906 CGTTTGATGAGCTCTGATGGC 59.670 52.381 16.19 0.81 0.00 4.40
3175 4186 3.181497 CCTGCTCAATGGTATTGGAAACG 60.181 47.826 2.09 0.00 0.00 3.60
3199 4210 0.607217 TGACTGGCACTTGGAGCATG 60.607 55.000 0.00 0.00 0.00 4.06
3458 4469 1.203052 CCAATCAGGCCACACATCAAC 59.797 52.381 5.01 0.00 0.00 3.18
3560 4571 4.899502 TCAGAAGTTCAGAACATTCCTCC 58.100 43.478 15.85 0.00 0.00 4.30
3765 4776 0.386476 TCTGTGCGTACTTTGACGGT 59.614 50.000 4.97 0.00 43.13 4.83
3839 4855 6.704050 TGAAAATGGCATTGCAATATCAGATG 59.296 34.615 14.47 0.03 0.00 2.90
4093 5109 0.402504 ACGCAAAATACCCCCACAGA 59.597 50.000 0.00 0.00 0.00 3.41
4218 5234 5.541868 AGATTTCCTGACTTCAGAGTTCAGA 59.458 40.000 7.87 0.00 46.59 3.27
4219 5235 5.638657 CAGATTTCCTGACTTCAGAGTTCAG 59.361 44.000 7.87 4.09 46.59 3.02
4220 5236 5.305386 TCAGATTTCCTGACTTCAGAGTTCA 59.695 40.000 7.87 0.00 46.38 3.18
4221 5237 5.788450 TCAGATTTCCTGACTTCAGAGTTC 58.212 41.667 7.87 0.24 46.38 3.01
4222 5238 5.815233 TCAGATTTCCTGACTTCAGAGTT 57.185 39.130 7.87 0.00 46.38 3.01
4278 5294 8.642935 TGATTTATTGTTTCCACCAGATTACA 57.357 30.769 0.00 0.00 0.00 2.41
4572 5603 2.795231 TGAAGAGCTTTGGGAGGATG 57.205 50.000 0.00 0.00 0.00 3.51
4705 5736 6.045072 AGAAAATGGCATGATGACAAACAT 57.955 33.333 4.48 0.00 39.86 2.71
4744 5775 5.297029 ACAGGATTAAAATTCTTCTAGCCGC 59.703 40.000 0.00 0.00 0.00 6.53
4868 5899 1.153549 GATCTCACCGCGGCTTCTT 60.154 57.895 28.58 7.78 0.00 2.52
4958 5989 2.420687 GGCCTTCTCAGACATACAAGGG 60.421 54.545 0.00 0.00 35.15 3.95
4967 5998 3.750828 GCTGTAGGCCTTCTCAGAC 57.249 57.895 25.88 13.60 34.27 3.51
4996 6027 1.446792 CGTTCATGCCTCAGCTCGT 60.447 57.895 0.00 0.00 40.80 4.18
5169 6211 4.308899 ACCGTGCATAAGTAGACATCTC 57.691 45.455 0.00 0.00 0.00 2.75
5521 6572 3.070302 CAGTACTCAGAAGGGAATAGGCC 59.930 52.174 0.00 0.00 0.00 5.19
5552 6603 9.099454 TCATTGTAAACCATTTTAACCAACAAC 57.901 29.630 0.00 0.00 0.00 3.32
5570 6621 4.623932 AGACTTGAGCCTGTCATTGTAA 57.376 40.909 0.00 0.00 34.17 2.41
5571 6622 4.623932 AAGACTTGAGCCTGTCATTGTA 57.376 40.909 0.00 0.00 34.17 2.41
5654 6706 4.616802 CGTGGCAATTCAAGTAAACATGTC 59.383 41.667 0.00 0.00 0.00 3.06
5660 6712 3.132160 TCGTCGTGGCAATTCAAGTAAA 58.868 40.909 0.00 0.00 0.00 2.01
5685 6737 2.099141 TTTGAAGCATGGGACTCGAG 57.901 50.000 11.84 11.84 0.00 4.04
5686 6738 2.358957 CATTTGAAGCATGGGACTCGA 58.641 47.619 0.00 0.00 0.00 4.04
5687 6739 1.402968 CCATTTGAAGCATGGGACTCG 59.597 52.381 0.00 0.00 38.05 4.18
6012 7106 4.895889 CACACCAGAGATCATACCTTCCTA 59.104 45.833 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.