Multiple sequence alignment - TraesCS5A01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G084800 chr5A 100.000 9825 0 0 1 9825 110671403 110661579 0.000000e+00 18144.0
1 TraesCS5A01G084800 chr5A 89.916 119 11 1 9708 9825 368103139 368103257 1.710000e-32 152.0
2 TraesCS5A01G084800 chr5A 92.308 104 8 0 6318 6421 25890692 25890589 2.210000e-31 148.0
3 TraesCS5A01G084800 chr5D 96.956 6012 131 23 1 5991 107786670 107780690 0.000000e+00 10041.0
4 TraesCS5A01G084800 chr5D 97.605 3382 70 6 6153 9532 107780691 107777319 0.000000e+00 5786.0
5 TraesCS5A01G084800 chr5D 95.604 91 4 0 9535 9625 107777346 107777256 7.950000e-31 147.0
6 TraesCS5A01G084800 chr5D 95.918 49 2 0 9665 9713 107776975 107776927 8.180000e-11 80.5
7 TraesCS5A01G084800 chr5B 95.787 5435 161 32 1 5402 117905799 117900400 0.000000e+00 8706.0
8 TraesCS5A01G084800 chr5B 95.132 3040 103 12 6413 9409 117899685 117896648 0.000000e+00 4752.0
9 TraesCS5A01G084800 chr5B 92.460 557 41 1 5436 5991 117900404 117899848 0.000000e+00 795.0
10 TraesCS5A01G084800 chr5B 87.209 516 22 14 8105 8602 628595768 628595279 1.870000e-151 547.0
11 TraesCS5A01G084800 chr5B 87.016 516 23 11 8105 8602 625022556 625022067 8.680000e-150 542.0
12 TraesCS5A01G084800 chr5B 92.537 201 14 1 5973 6173 657711462 657711263 4.490000e-73 287.0
13 TraesCS5A01G084800 chr5B 94.565 184 8 2 5975 6156 528369544 528369361 5.810000e-72 283.0
14 TraesCS5A01G084800 chr5B 93.413 167 10 1 6153 6319 117899849 117899684 7.620000e-61 246.0
15 TraesCS5A01G084800 chr5B 85.321 218 27 4 1877 2092 313143288 313143074 4.620000e-53 220.0
16 TraesCS5A01G084800 chr5B 94.030 134 7 1 9400 9532 117892375 117892242 1.670000e-47 202.0
17 TraesCS5A01G084800 chr5B 95.918 98 4 0 6318 6415 537533244 537533147 1.020000e-34 159.0
18 TraesCS5A01G084800 chr5B 89.831 118 11 1 9709 9825 446544676 446544559 6.150000e-32 150.0
19 TraesCS5A01G084800 chr5B 92.784 97 7 0 9535 9631 117892269 117892173 3.700000e-29 141.0
20 TraesCS5A01G084800 chr5B 97.297 37 1 0 9677 9713 117835737 117835701 8.240000e-06 63.9
21 TraesCS5A01G084800 chr2A 91.770 644 31 7 1265 1893 685528247 685528883 0.000000e+00 876.0
22 TraesCS5A01G084800 chr2A 93.822 259 10 2 946 1204 685527995 685528247 1.550000e-102 385.0
23 TraesCS5A01G084800 chr2A 80.930 215 33 7 1882 2091 68244122 68244333 7.900000e-36 163.0
24 TraesCS5A01G084800 chr2A 89.655 116 11 1 9709 9823 461768506 461768391 7.950000e-31 147.0
25 TraesCS5A01G084800 chr2A 92.308 104 7 1 6318 6421 498090226 498090328 7.950000e-31 147.0
26 TraesCS5A01G084800 chr6B 89.558 498 25 11 8105 8602 298437278 298436808 3.030000e-169 606.0
27 TraesCS5A01G084800 chr6B 94.118 102 6 0 6317 6418 424084189 424084088 1.320000e-33 156.0
28 TraesCS5A01G084800 chr6B 94.118 102 6 0 6317 6418 424306887 424306786 1.320000e-33 156.0
29 TraesCS5A01G084800 chr6B 80.000 215 40 3 1877 2090 717561973 717561761 1.320000e-33 156.0
30 TraesCS5A01G084800 chr7B 89.357 498 27 10 8105 8602 486458697 486458226 3.930000e-168 603.0
31 TraesCS5A01G084800 chr4D 95.082 183 9 0 5977 6159 238640152 238640334 1.250000e-73 289.0
32 TraesCS5A01G084800 chr3A 93.264 193 13 0 5975 6167 70479030 70479222 1.620000e-72 285.0
33 TraesCS5A01G084800 chr3A 89.916 119 10 2 9709 9825 727372295 727372413 1.710000e-32 152.0
34 TraesCS5A01G084800 chr3B 95.000 180 8 1 5978 6156 571752702 571752523 2.090000e-71 281.0
35 TraesCS5A01G084800 chr3B 94.475 181 9 1 5977 6157 117922573 117922394 2.700000e-70 278.0
36 TraesCS5A01G084800 chr2B 95.977 174 6 1 5990 6163 25496150 25495978 2.090000e-71 281.0
37 TraesCS5A01G084800 chr2D 92.670 191 14 0 5978 6168 457644182 457643992 9.720000e-70 276.0
38 TraesCS5A01G084800 chr2D 80.263 228 30 10 1877 2099 634921793 634921576 3.670000e-34 158.0
39 TraesCS5A01G084800 chr2D 94.792 96 5 0 6320 6415 52051382 52051477 6.150000e-32 150.0
40 TraesCS5A01G084800 chr2D 92.157 102 8 0 6318 6419 65323890 65323789 2.860000e-30 145.0
41 TraesCS5A01G084800 chr3D 89.202 213 19 4 5977 6188 554149980 554149771 7.570000e-66 263.0
42 TraesCS5A01G084800 chr1D 85.253 217 28 4 1877 2091 383758233 383758019 4.620000e-53 220.0
43 TraesCS5A01G084800 chr1D 88.430 121 13 1 9706 9825 300022269 300022389 2.860000e-30 145.0
44 TraesCS5A01G084800 chr6A 85.446 213 27 4 1877 2087 481744844 481744634 1.660000e-52 219.0
45 TraesCS5A01G084800 chr6A 87.705 122 14 1 9705 9825 487689604 487689725 3.700000e-29 141.0
46 TraesCS5A01G084800 chr1B 83.945 218 31 4 1877 2092 123953533 123953318 1.290000e-48 206.0
47 TraesCS5A01G084800 chr1B 91.743 109 9 0 6313 6421 336350755 336350863 1.710000e-32 152.0
48 TraesCS5A01G084800 chr1B 89.831 118 11 1 9709 9825 342119403 342119286 6.150000e-32 150.0
49 TraesCS5A01G084800 chr1B 88.983 118 8 5 9709 9823 442960278 442960393 3.700000e-29 141.0
50 TraesCS5A01G084800 chr4A 82.938 211 30 5 1882 2089 674359634 674359841 1.690000e-42 185.0
51 TraesCS5A01G084800 chr4A 88.983 118 12 1 9709 9825 690112652 690112535 2.860000e-30 145.0
52 TraesCS5A01G084800 chr4A 82.000 100 15 3 1994 2092 513374724 513374821 2.270000e-11 82.4
53 TraesCS5A01G084800 chr7A 80.976 205 30 8 1889 2089 61787914 61787715 4.750000e-33 154.0
54 TraesCS5A01G084800 chrUn 83.544 158 25 1 1877 2033 217886300 217886457 7.950000e-31 147.0
55 TraesCS5A01G084800 chrUn 83.030 165 25 2 1877 2038 338142488 338142324 7.950000e-31 147.0
56 TraesCS5A01G084800 chrUn 83.544 158 25 1 1877 2033 348911238 348911395 7.950000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G084800 chr5A 110661579 110671403 9824 True 18144.000 18144 100.00000 1 9825 1 chr5A.!!$R2 9824
1 TraesCS5A01G084800 chr5D 107776927 107786670 9743 True 4013.625 10041 96.52075 1 9713 4 chr5D.!!$R1 9712
2 TraesCS5A01G084800 chr5B 117896648 117905799 9151 True 3624.750 8706 94.19800 1 9409 4 chr5B.!!$R10 9408
3 TraesCS5A01G084800 chr2A 685527995 685528883 888 False 630.500 876 92.79600 946 1893 2 chr2A.!!$F3 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 176 0.111061 AGGTGCATTCAGCCAAGTCA 59.889 50.000 0.00 0.0 44.83 3.41 F
1227 1236 0.036765 TTGTAGTAGTGCTTGGCGGG 60.037 55.000 0.00 0.0 0.00 6.13 F
1959 1993 1.251251 AGCCCTGCAATTTCTGACAC 58.749 50.000 0.00 0.0 0.00 3.67 F
3114 3156 1.134670 GTCAGCAATCGGAGCCTACTT 60.135 52.381 0.00 0.0 0.00 2.24 F
3776 3821 1.341383 GCCACAGGTCCTCCAAATGAT 60.341 52.381 0.00 0.0 35.89 2.45 F
3809 3854 3.069729 CACAGCCATACCCTCCTAACTAC 59.930 52.174 0.00 0.0 0.00 2.73 F
5092 5137 1.227383 GACATGGGCGGGGAGAAAT 59.773 57.895 0.00 0.0 0.00 2.17 F
5630 5690 0.106708 AGCACATGTGTCACGGACTT 59.893 50.000 26.01 0.0 33.15 3.01 F
6613 6700 0.587768 GTGCCAAACAATTGCAAGCC 59.412 50.000 4.94 0.0 35.10 4.35 F
7974 8061 1.040646 TCACACGAAGTTCAGAGGCT 58.959 50.000 3.32 0.0 41.61 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1833 1.251251 GCCAAATGCTCCTTGACAGT 58.749 50.000 0.00 0.00 36.87 3.55 R
2257 2294 2.032924 GCGTTAACCTGATTATGTGGGC 59.967 50.000 0.00 0.00 0.00 5.36 R
3273 3315 2.906389 TCAGTAAGAAGTCATGGCCTGT 59.094 45.455 3.32 0.00 0.00 4.00 R
4179 4224 0.394899 GGTTGATGAGGGCCTCCAAG 60.395 60.000 30.03 0.00 34.83 3.61 R
4853 4898 1.003580 GGAGAAACACATCCTGCCTGA 59.996 52.381 0.00 0.00 32.51 3.86 R
5414 5460 1.647084 GTTGTTGTGAGGCACGTCC 59.353 57.895 0.00 0.00 37.14 4.79 R
6957 7044 1.800805 CTCCGTCATGTTGCTCTGTT 58.199 50.000 0.00 0.00 0.00 3.16 R
7180 7267 2.598394 TTCTTGCTGTGGGCTGGC 60.598 61.111 0.00 0.00 42.39 4.85 R
7989 8076 0.595095 CTTGTCAGGTTCAAGCTGCC 59.405 55.000 11.99 0.43 43.02 4.85 R
9051 9150 0.827507 GCCCAAAAGCCCTGAGAACA 60.828 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 176 0.111061 AGGTGCATTCAGCCAAGTCA 59.889 50.000 0.00 0.00 44.83 3.41
188 191 3.859386 GCCAAGTCAAAACAAGACACAAG 59.141 43.478 0.00 0.00 38.46 3.16
196 199 6.256321 GTCAAAACAAGACACAAGCAAATCAT 59.744 34.615 0.00 0.00 36.06 2.45
201 204 8.524870 AACAAGACACAAGCAAATCATTTATC 57.475 30.769 0.00 0.00 0.00 1.75
275 281 3.980775 CCAACATTACAACGCAAAGAAGG 59.019 43.478 0.00 0.00 0.00 3.46
345 354 2.043992 TCACGAGGGAGGACAAAAGAA 58.956 47.619 0.00 0.00 0.00 2.52
682 691 2.764547 CCGTCCCCTTCCCTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
1227 1236 0.036765 TTGTAGTAGTGCTTGGCGGG 60.037 55.000 0.00 0.00 0.00 6.13
1425 1434 1.593196 CCGTGCTCTTCTTTCAACCA 58.407 50.000 0.00 0.00 0.00 3.67
1798 1832 7.396540 AAGTTTTGAATCCTTTCGATAGCAT 57.603 32.000 0.00 0.00 34.39 3.79
1799 1833 8.506168 AAGTTTTGAATCCTTTCGATAGCATA 57.494 30.769 0.00 0.00 34.39 3.14
1808 1842 4.747108 CCTTTCGATAGCATACTGTCAAGG 59.253 45.833 0.00 0.00 33.67 3.61
1831 1865 2.094597 GCATTTGGCATAACTCTGCACA 60.095 45.455 0.00 0.00 44.12 4.57
1900 1934 4.202101 TGGCAAATCTGACGTTTTTCATGT 60.202 37.500 0.00 0.00 30.46 3.21
1957 1991 2.358939 CAAGCCCTGCAATTTCTGAC 57.641 50.000 0.00 0.00 0.00 3.51
1959 1993 1.251251 AGCCCTGCAATTTCTGACAC 58.749 50.000 0.00 0.00 0.00 3.67
2219 2256 7.126268 TCCATTCATTTATCCTTCTGAGACTCA 59.874 37.037 4.78 4.78 0.00 3.41
2660 2702 9.604626 CATTCAGAGTTCTCAATAGTTTTCAAC 57.395 33.333 2.64 0.00 0.00 3.18
2900 2942 1.463674 CTTGGGGTCCAAATTCTCGG 58.536 55.000 0.84 0.00 43.44 4.63
2912 2954 4.742649 TCTCGGCCGTCCTCAGCT 62.743 66.667 27.15 0.00 0.00 4.24
3114 3156 1.134670 GTCAGCAATCGGAGCCTACTT 60.135 52.381 0.00 0.00 0.00 2.24
3115 3157 2.100916 GTCAGCAATCGGAGCCTACTTA 59.899 50.000 0.00 0.00 0.00 2.24
3116 3158 2.764010 TCAGCAATCGGAGCCTACTTAA 59.236 45.455 0.00 0.00 0.00 1.85
3244 3286 2.668457 CAGTCAACGAGGTAATCTGCAC 59.332 50.000 0.00 0.00 0.00 4.57
3260 3302 9.103048 GTAATCTGCACGCAAAATGTATTATAC 57.897 33.333 0.00 0.00 0.00 1.47
3358 3402 8.095792 GCTGATATATGCCATATCTGCTAGATT 58.904 37.037 24.65 0.00 44.93 2.40
3776 3821 1.341383 GCCACAGGTCCTCCAAATGAT 60.341 52.381 0.00 0.00 35.89 2.45
3809 3854 3.069729 CACAGCCATACCCTCCTAACTAC 59.930 52.174 0.00 0.00 0.00 2.73
4070 4115 9.698309 ACTCCTAATTCGTATGTTATGAATCAG 57.302 33.333 3.20 0.00 42.07 2.90
4179 4224 5.221126 GCCAATGTAAGAGATTCACCATTCC 60.221 44.000 0.00 0.00 0.00 3.01
4322 4367 7.041030 TCCGAATCTGATAGAGTACAGTTGATC 60.041 40.741 0.00 0.00 35.84 2.92
4816 4861 4.036734 CCGGGTGATAAAAGATGTTCCATG 59.963 45.833 0.00 0.00 0.00 3.66
4826 4871 3.110705 AGATGTTCCATGTACTCCTGCT 58.889 45.455 0.00 0.00 0.00 4.24
4853 4898 1.339291 GCTTTTGCTTCTGCTTCTGGT 59.661 47.619 0.00 0.00 43.35 4.00
4861 4906 1.376942 CTGCTTCTGGTCAGGCAGG 60.377 63.158 16.30 4.11 45.59 4.85
5056 5101 1.630369 TGGTCCTGCTAAAGACATGCT 59.370 47.619 0.00 0.00 34.58 3.79
5057 5102 2.040278 TGGTCCTGCTAAAGACATGCTT 59.960 45.455 0.00 0.00 38.88 3.91
5092 5137 1.227383 GACATGGGCGGGGAGAAAT 59.773 57.895 0.00 0.00 0.00 2.17
5176 5221 1.601759 ATGTTTCGCAGCTGCCACT 60.602 52.632 32.07 13.10 37.91 4.00
5276 5321 9.918630 AGTGGAAGAGTTTGATTATGAATTTTG 57.081 29.630 0.00 0.00 0.00 2.44
5433 5479 1.647084 GACGTGCCTCACAACAACC 59.353 57.895 0.00 0.00 33.40 3.77
5450 5496 4.407365 ACAACCTGTTTTTAGGATGGAGG 58.593 43.478 6.95 0.00 42.92 4.30
5456 5502 5.880887 CCTGTTTTTAGGATGGAGGTACTTC 59.119 44.000 0.00 0.00 38.61 3.01
5474 5520 2.604912 TCCTCAGCTCTCACCAGTAA 57.395 50.000 0.00 0.00 0.00 2.24
5475 5521 3.107402 TCCTCAGCTCTCACCAGTAAT 57.893 47.619 0.00 0.00 0.00 1.89
5476 5522 4.251103 TCCTCAGCTCTCACCAGTAATA 57.749 45.455 0.00 0.00 0.00 0.98
5477 5523 4.809193 TCCTCAGCTCTCACCAGTAATAT 58.191 43.478 0.00 0.00 0.00 1.28
5478 5524 5.953571 TCCTCAGCTCTCACCAGTAATATA 58.046 41.667 0.00 0.00 0.00 0.86
5479 5525 6.556639 TCCTCAGCTCTCACCAGTAATATAT 58.443 40.000 0.00 0.00 0.00 0.86
5480 5526 6.661377 TCCTCAGCTCTCACCAGTAATATATC 59.339 42.308 0.00 0.00 0.00 1.63
5481 5527 6.663093 CCTCAGCTCTCACCAGTAATATATCT 59.337 42.308 0.00 0.00 0.00 1.98
5482 5528 7.148086 CCTCAGCTCTCACCAGTAATATATCTC 60.148 44.444 0.00 0.00 0.00 2.75
5483 5529 6.372937 TCAGCTCTCACCAGTAATATATCTCG 59.627 42.308 0.00 0.00 0.00 4.04
5484 5530 6.150307 CAGCTCTCACCAGTAATATATCTCGT 59.850 42.308 0.00 0.00 0.00 4.18
5485 5531 6.373216 AGCTCTCACCAGTAATATATCTCGTC 59.627 42.308 0.00 0.00 0.00 4.20
5486 5532 6.149640 GCTCTCACCAGTAATATATCTCGTCA 59.850 42.308 0.00 0.00 0.00 4.35
5487 5533 7.436430 TCTCACCAGTAATATATCTCGTCAC 57.564 40.000 0.00 0.00 0.00 3.67
5563 5623 6.935741 ACTTTAGTTGTGCAAATGTGACTA 57.064 33.333 0.00 0.00 0.00 2.59
5630 5690 0.106708 AGCACATGTGTCACGGACTT 59.893 50.000 26.01 0.00 33.15 3.01
5706 5766 2.240921 TGCCATTGATACCCTGCACTAA 59.759 45.455 0.00 0.00 0.00 2.24
5708 5768 3.254166 GCCATTGATACCCTGCACTAATG 59.746 47.826 0.00 0.00 0.00 1.90
5713 5773 7.448161 CCATTGATACCCTGCACTAATGAATTA 59.552 37.037 0.00 0.00 0.00 1.40
5888 5949 3.561143 AGGATTGGTGCTGTTTGTTACA 58.439 40.909 0.00 0.00 34.95 2.41
5891 5952 2.834574 TGGTGCTGTTTGTTACAACG 57.165 45.000 0.00 0.00 36.02 4.10
5899 5960 6.355144 GTGCTGTTTGTTACAACGTAACATAC 59.645 38.462 22.70 22.70 38.75 2.39
5906 5967 8.640091 TTGTTACAACGTAACATACTTGTGTA 57.360 30.769 17.71 0.70 37.29 2.90
5950 6011 8.726988 CGAGGTCAGGTTTTATCTAAAATTTCA 58.273 33.333 0.00 0.00 37.48 2.69
5996 6057 7.989947 TGACCTAAAATGTCTTATACTCCCT 57.010 36.000 0.00 0.00 33.83 4.20
5997 6058 8.019656 TGACCTAAAATGTCTTATACTCCCTC 57.980 38.462 0.00 0.00 33.83 4.30
5998 6059 7.070821 TGACCTAAAATGTCTTATACTCCCTCC 59.929 40.741 0.00 0.00 33.83 4.30
5999 6060 6.041751 ACCTAAAATGTCTTATACTCCCTCCG 59.958 42.308 0.00 0.00 0.00 4.63
6000 6061 5.952347 AAAATGTCTTATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
6001 6062 5.952347 AAATGTCTTATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
6002 6063 5.532664 AATGTCTTATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
6003 6064 3.294214 TGTCTTATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
6004 6065 3.053095 TGTCTTATACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
6005 6066 4.166725 TGTCTTATACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
6006 6067 5.136105 GTCTTATACTCCCTCCGTTCCTAA 58.864 45.833 0.00 0.00 0.00 2.69
6007 6068 5.595952 GTCTTATACTCCCTCCGTTCCTAAA 59.404 44.000 0.00 0.00 0.00 1.85
6008 6069 6.267242 GTCTTATACTCCCTCCGTTCCTAAAT 59.733 42.308 0.00 0.00 0.00 1.40
6009 6070 7.449704 GTCTTATACTCCCTCCGTTCCTAAATA 59.550 40.741 0.00 0.00 0.00 1.40
6010 6071 8.175431 TCTTATACTCCCTCCGTTCCTAAATAT 58.825 37.037 0.00 0.00 0.00 1.28
6011 6072 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
6012 6073 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6013 6074 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6014 6075 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6015 6076 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6016 6077 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6017 6078 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6018 6079 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6019 6080 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6020 6081 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6021 6082 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6022 6083 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6023 6084 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6040 6101 9.436957 TCTTTCTAGACATTTCAAATGGACTAC 57.563 33.333 14.70 1.26 0.00 2.73
6041 6102 8.561738 TTTCTAGACATTTCAAATGGACTACC 57.438 34.615 14.70 0.00 0.00 3.18
6094 6155 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6095 6156 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6096 6157 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6097 6158 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6098 6159 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6099 6160 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6100 6161 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6101 6162 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6102 6163 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6103 6164 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6104 6165 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6105 6166 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6106 6167 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6107 6168 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
6108 6169 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
6109 6170 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
6110 6171 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6111 6172 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6112 6173 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6113 6174 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6114 6175 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
6115 6176 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
6116 6177 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
6117 6178 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
6118 6179 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
6119 6180 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
6120 6181 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
6121 6182 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
6130 6191 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
6148 6209 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
6149 6210 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
6150 6211 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
6151 6212 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
6152 6213 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
6153 6214 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
6162 6223 5.731678 AGGAACAGAGGGAGTATTTGGTTAT 59.268 40.000 0.00 0.00 0.00 1.89
6232 6293 3.969117 TGTCACATGACTTGTTCTTGC 57.031 42.857 12.98 0.00 44.99 4.01
6315 6376 3.609853 TGCCTGCTTACCAGTCTTATTG 58.390 45.455 0.00 0.00 40.06 1.90
6423 6485 6.563163 AGGACGGAGGGAGTATTAAATAGAT 58.437 40.000 0.00 0.00 0.00 1.98
6613 6700 0.587768 GTGCCAAACAATTGCAAGCC 59.412 50.000 4.94 0.00 35.10 4.35
6731 6818 3.181435 TGATCCACCACCAGAAAATGACA 60.181 43.478 0.00 0.00 0.00 3.58
6743 6830 4.318071 CAGAAAATGACAACGTGCGTAATG 59.682 41.667 0.00 0.00 0.00 1.90
6765 6852 1.888512 GCAAAAGGCTGGAGTTGATGA 59.111 47.619 0.00 0.00 40.25 2.92
6812 6899 5.942236 ACTGCTGAATCACATGATGTTACTT 59.058 36.000 0.00 0.00 34.49 2.24
6920 7007 3.197766 TGCTGAGGGTACAGGTAAAGATG 59.802 47.826 0.00 0.00 38.22 2.90
6957 7044 2.655090 TCAACCTCAGGCATGAACAA 57.345 45.000 1.37 0.00 34.23 2.83
7077 7164 6.515272 TGCTGTTTCAGAGGATAAAATTCC 57.485 37.500 0.66 0.00 32.44 3.01
7097 7184 2.103094 CCTGGTGAGAAGTCAAGTGTGA 59.897 50.000 0.00 0.00 33.27 3.58
7252 7339 2.103771 TGATGATGCTCCTGCTACTTCC 59.896 50.000 0.00 0.00 40.48 3.46
7304 7391 4.716784 AGAATACACCAAGCATCTCCAGTA 59.283 41.667 0.00 0.00 0.00 2.74
7305 7392 5.367937 AGAATACACCAAGCATCTCCAGTAT 59.632 40.000 0.00 0.00 0.00 2.12
7390 7477 5.867716 CGTGCTTACTGTTGGAAGTATAACT 59.132 40.000 0.00 0.00 32.78 2.24
7487 7574 1.535204 CCGCCCAAAACCTCAGCAAT 61.535 55.000 0.00 0.00 0.00 3.56
7609 7696 5.643421 ATGAACCATCTGAGGAAGCTAAT 57.357 39.130 0.00 0.00 0.00 1.73
7654 7741 2.103735 CCAATTGGAAAGGGCACCACT 61.104 52.381 20.50 0.00 46.66 4.00
7922 8009 1.825474 ACTCATCTTCGGTGGTACCAG 59.175 52.381 16.93 4.58 38.47 4.00
7974 8061 1.040646 TCACACGAAGTTCAGAGGCT 58.959 50.000 3.32 0.00 41.61 4.58
8265 8358 3.123620 GGTGAAGAGCAGCGCAGG 61.124 66.667 11.47 1.51 34.99 4.85
8381 8474 0.453950 GCAAGACAGCAGCAATCGTG 60.454 55.000 0.00 1.21 0.00 4.35
8773 8866 3.338250 AAGCGGAATCCTGCCCCA 61.338 61.111 11.36 0.00 45.76 4.96
8884 8983 4.202172 TGTCGAGTCATTCACAACAGGTAA 60.202 41.667 0.00 0.00 0.00 2.85
8895 8994 6.214191 TCACAACAGGTAAGCAAATGAAAA 57.786 33.333 0.00 0.00 0.00 2.29
8946 9045 1.669779 GGCAGCTTGTGTGATCTCATC 59.330 52.381 0.02 0.00 0.00 2.92
8974 9073 1.340017 TGGCTAACATGTTCAGAGGCC 60.340 52.381 23.24 22.35 38.87 5.19
9428 9533 0.105964 TGCAGTTAACTGTCGCCTGT 59.894 50.000 30.90 0.00 45.45 4.00
9443 9548 2.616842 CGCCTGTACCAACAAAAGAGTT 59.383 45.455 0.00 0.00 34.49 3.01
9445 9550 4.439563 CGCCTGTACCAACAAAAGAGTTTT 60.440 41.667 0.00 0.00 34.49 2.43
9480 9585 2.376063 AGCATATGGCCGCTGGATA 58.624 52.632 4.56 0.00 46.50 2.59
9515 9620 3.426568 GCACAGCGCACCTTCCTC 61.427 66.667 11.47 0.00 41.79 3.71
9516 9621 2.743928 CACAGCGCACCTTCCTCC 60.744 66.667 11.47 0.00 0.00 4.30
9517 9622 4.379243 ACAGCGCACCTTCCTCCG 62.379 66.667 11.47 0.00 0.00 4.63
9518 9623 4.069232 CAGCGCACCTTCCTCCGA 62.069 66.667 11.47 0.00 0.00 4.55
9519 9624 3.311110 AGCGCACCTTCCTCCGAA 61.311 61.111 11.47 0.00 0.00 4.30
9520 9625 2.815647 GCGCACCTTCCTCCGAAG 60.816 66.667 0.30 0.00 44.47 3.79
9521 9626 2.657237 CGCACCTTCCTCCGAAGT 59.343 61.111 0.00 0.00 43.52 3.01
9522 9627 1.004918 CGCACCTTCCTCCGAAGTT 60.005 57.895 0.00 0.00 43.52 2.66
9523 9628 0.602905 CGCACCTTCCTCCGAAGTTT 60.603 55.000 0.00 0.00 43.52 2.66
9524 9629 1.605753 GCACCTTCCTCCGAAGTTTT 58.394 50.000 0.00 0.00 43.52 2.43
9525 9630 1.535896 GCACCTTCCTCCGAAGTTTTC 59.464 52.381 0.00 0.00 43.52 2.29
9526 9631 2.846193 CACCTTCCTCCGAAGTTTTCA 58.154 47.619 0.00 0.00 43.52 2.69
9527 9632 3.211045 CACCTTCCTCCGAAGTTTTCAA 58.789 45.455 0.00 0.00 43.52 2.69
9528 9633 3.630312 CACCTTCCTCCGAAGTTTTCAAA 59.370 43.478 0.00 0.00 43.52 2.69
9529 9634 4.097286 CACCTTCCTCCGAAGTTTTCAAAA 59.903 41.667 0.00 0.00 43.52 2.44
9530 9635 4.893524 ACCTTCCTCCGAAGTTTTCAAAAT 59.106 37.500 0.00 0.00 43.52 1.82
9531 9636 5.362717 ACCTTCCTCCGAAGTTTTCAAAATT 59.637 36.000 0.00 0.00 43.52 1.82
9532 9637 5.691754 CCTTCCTCCGAAGTTTTCAAAATTG 59.308 40.000 0.00 0.00 43.52 2.32
9533 9638 5.845391 TCCTCCGAAGTTTTCAAAATTGT 57.155 34.783 0.00 0.00 0.00 2.71
9591 9696 1.737793 GACAAAGCTGATTACGTGGGG 59.262 52.381 0.00 0.00 0.00 4.96
9616 9721 9.665264 GGTTTGCTAATAACTGCTGATATTTAC 57.335 33.333 10.58 5.46 0.00 2.01
9628 9733 9.378551 ACTGCTGATATTTACGAAACTAATTCA 57.621 29.630 0.00 0.00 37.96 2.57
9630 9735 9.982291 TGCTGATATTTACGAAACTAATTCAAC 57.018 29.630 0.00 0.00 37.96 3.18
9631 9736 9.982291 GCTGATATTTACGAAACTAATTCAACA 57.018 29.630 0.00 0.00 37.96 3.33
9641 9746 9.719279 ACGAAACTAATTCAACATTTTACGAAA 57.281 25.926 0.00 0.00 37.96 3.46
9642 9747 9.968620 CGAAACTAATTCAACATTTTACGAAAC 57.031 29.630 0.00 0.00 37.96 2.78
9714 10060 2.935481 CAACGTCTGGAGGTACTACC 57.065 55.000 0.00 0.00 39.75 3.18
9725 10071 2.416680 GGTACTACCTCCGTCTCAGT 57.583 55.000 0.00 0.00 34.73 3.41
9726 10072 2.720915 GGTACTACCTCCGTCTCAGTT 58.279 52.381 0.00 0.00 34.73 3.16
9727 10073 3.087781 GGTACTACCTCCGTCTCAGTTT 58.912 50.000 0.00 0.00 34.73 2.66
9728 10074 4.265073 GGTACTACCTCCGTCTCAGTTTA 58.735 47.826 0.00 0.00 34.73 2.01
9729 10075 4.095632 GGTACTACCTCCGTCTCAGTTTAC 59.904 50.000 0.00 0.00 34.73 2.01
9730 10076 3.759581 ACTACCTCCGTCTCAGTTTACA 58.240 45.455 0.00 0.00 0.00 2.41
9731 10077 4.147321 ACTACCTCCGTCTCAGTTTACAA 58.853 43.478 0.00 0.00 0.00 2.41
9732 10078 3.662247 ACCTCCGTCTCAGTTTACAAG 57.338 47.619 0.00 0.00 0.00 3.16
9733 10079 2.963782 ACCTCCGTCTCAGTTTACAAGT 59.036 45.455 0.00 0.00 0.00 3.16
9734 10080 3.005578 ACCTCCGTCTCAGTTTACAAGTC 59.994 47.826 0.00 0.00 0.00 3.01
9735 10081 3.576648 CTCCGTCTCAGTTTACAAGTCC 58.423 50.000 0.00 0.00 0.00 3.85
9736 10082 3.228453 TCCGTCTCAGTTTACAAGTCCT 58.772 45.455 0.00 0.00 0.00 3.85
9737 10083 4.401022 TCCGTCTCAGTTTACAAGTCCTA 58.599 43.478 0.00 0.00 0.00 2.94
9738 10084 4.217118 TCCGTCTCAGTTTACAAGTCCTAC 59.783 45.833 0.00 0.00 0.00 3.18
9739 10085 4.156915 CGTCTCAGTTTACAAGTCCTACG 58.843 47.826 0.00 0.00 0.00 3.51
9740 10086 4.320057 CGTCTCAGTTTACAAGTCCTACGT 60.320 45.833 0.00 0.00 0.00 3.57
9741 10087 4.916249 GTCTCAGTTTACAAGTCCTACGTG 59.084 45.833 0.00 0.00 33.76 4.49
9742 10088 4.581824 TCTCAGTTTACAAGTCCTACGTGT 59.418 41.667 0.00 4.18 43.02 4.49
9743 10089 5.764686 TCTCAGTTTACAAGTCCTACGTGTA 59.235 40.000 0.00 2.37 40.98 2.90
9744 10090 6.432162 TCTCAGTTTACAAGTCCTACGTGTAT 59.568 38.462 0.00 0.00 41.34 2.29
9745 10091 7.607607 TCTCAGTTTACAAGTCCTACGTGTATA 59.392 37.037 0.00 0.77 41.34 1.47
9746 10092 7.530010 TCAGTTTACAAGTCCTACGTGTATAC 58.470 38.462 14.14 14.14 41.34 1.47
9747 10093 6.749118 CAGTTTACAAGTCCTACGTGTATACC 59.251 42.308 16.56 6.29 41.70 2.73
9748 10094 6.660949 AGTTTACAAGTCCTACGTGTATACCT 59.339 38.462 16.56 7.78 41.70 3.08
9749 10095 4.978083 ACAAGTCCTACGTGTATACCTG 57.022 45.455 0.00 0.00 38.97 4.00
9750 10096 3.698040 ACAAGTCCTACGTGTATACCTGG 59.302 47.826 0.00 0.00 38.97 4.45
9751 10097 3.659183 AGTCCTACGTGTATACCTGGT 57.341 47.619 4.05 4.05 0.00 4.00
9752 10098 3.973425 AGTCCTACGTGTATACCTGGTT 58.027 45.455 3.84 0.00 0.00 3.67
9753 10099 3.698040 AGTCCTACGTGTATACCTGGTTG 59.302 47.826 3.84 0.00 0.00 3.77
9754 10100 3.445096 GTCCTACGTGTATACCTGGTTGT 59.555 47.826 3.84 0.00 0.00 3.32
9755 10101 4.082026 GTCCTACGTGTATACCTGGTTGTT 60.082 45.833 3.84 0.00 0.00 2.83
9756 10102 5.125417 GTCCTACGTGTATACCTGGTTGTTA 59.875 44.000 3.84 0.00 0.00 2.41
9757 10103 5.714333 TCCTACGTGTATACCTGGTTGTTAA 59.286 40.000 3.84 0.00 0.00 2.01
9758 10104 6.380846 TCCTACGTGTATACCTGGTTGTTAAT 59.619 38.462 3.84 0.00 0.00 1.40
9759 10105 7.043565 CCTACGTGTATACCTGGTTGTTAATT 58.956 38.462 3.84 0.00 0.00 1.40
9760 10106 7.550196 CCTACGTGTATACCTGGTTGTTAATTT 59.450 37.037 3.84 0.00 0.00 1.82
9761 10107 9.585099 CTACGTGTATACCTGGTTGTTAATTTA 57.415 33.333 3.84 0.00 0.00 1.40
9762 10108 8.845413 ACGTGTATACCTGGTTGTTAATTTAA 57.155 30.769 3.84 0.00 0.00 1.52
9763 10109 9.452287 ACGTGTATACCTGGTTGTTAATTTAAT 57.548 29.630 3.84 0.00 0.00 1.40
9764 10110 9.925268 CGTGTATACCTGGTTGTTAATTTAATC 57.075 33.333 3.84 0.00 0.00 1.75
9768 10114 6.599356 ACCTGGTTGTTAATTTAATCACCC 57.401 37.500 13.31 7.38 0.00 4.61
9769 10115 6.319715 ACCTGGTTGTTAATTTAATCACCCT 58.680 36.000 13.31 0.18 0.00 4.34
9770 10116 6.210584 ACCTGGTTGTTAATTTAATCACCCTG 59.789 38.462 13.31 9.35 0.00 4.45
9771 10117 6.435904 CCTGGTTGTTAATTTAATCACCCTGA 59.564 38.462 13.31 0.00 0.00 3.86
9772 10118 7.124147 CCTGGTTGTTAATTTAATCACCCTGAT 59.876 37.037 13.31 0.00 39.09 2.90
9773 10119 9.184523 CTGGTTGTTAATTTAATCACCCTGATA 57.815 33.333 13.31 0.31 35.76 2.15
9774 10120 9.707957 TGGTTGTTAATTTAATCACCCTGATAT 57.292 29.630 13.31 0.00 35.76 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.250945 TCAAGGTTATGGTTGGCGCA 60.251 50.000 10.83 0.00 0.00 6.09
15 16 5.967674 GCGAGACAATGAATTCAAGGTTATG 59.032 40.000 13.09 7.53 0.00 1.90
174 176 7.614124 AAATGATTTGCTTGTGTCTTGTTTT 57.386 28.000 0.00 0.00 0.00 2.43
188 191 9.706846 GGCTTTGTTTATTGATAAATGATTTGC 57.293 29.630 0.00 0.00 35.02 3.68
201 204 6.812656 TGCTGATATGTTGGCTTTGTTTATTG 59.187 34.615 0.00 0.00 0.00 1.90
206 209 4.039004 TGTTGCTGATATGTTGGCTTTGTT 59.961 37.500 0.00 0.00 0.00 2.83
345 354 3.386402 TGGTCGATGCCCTTTTTCTTTTT 59.614 39.130 0.00 0.00 0.00 1.94
350 359 0.168128 CGTGGTCGATGCCCTTTTTC 59.832 55.000 0.00 0.00 39.71 2.29
352 361 2.332654 GCGTGGTCGATGCCCTTTT 61.333 57.895 0.00 0.00 39.71 2.27
356 365 4.501714 TACGCGTGGTCGATGCCC 62.502 66.667 24.59 0.00 39.71 5.36
519 528 1.076014 TACGAGTGGTGGGCTCTGA 59.924 57.895 0.00 0.00 0.00 3.27
1195 1204 7.941919 AGCACTACTACAAATCGATGATTAGA 58.058 34.615 0.00 0.00 31.46 2.10
1196 1205 8.483218 CAAGCACTACTACAAATCGATGATTAG 58.517 37.037 0.00 2.35 31.46 1.73
1227 1236 5.063060 CGACACCAAAGCTAAATACTACCAC 59.937 44.000 0.00 0.00 0.00 4.16
1798 1832 2.224744 TGCCAAATGCTCCTTGACAGTA 60.225 45.455 0.00 0.00 42.00 2.74
1799 1833 1.251251 GCCAAATGCTCCTTGACAGT 58.749 50.000 0.00 0.00 36.87 3.55
1808 1842 2.424601 TGCAGAGTTATGCCAAATGCTC 59.575 45.455 0.00 0.00 45.91 4.26
1831 1865 4.657504 TGATTATGGCTGAGAGATGGAAGT 59.342 41.667 0.00 0.00 0.00 3.01
1874 1908 2.900122 AAACGTCAGATTTGCCATCG 57.100 45.000 0.00 0.00 0.00 3.84
1900 1934 6.623986 GCCGTTATCACACCAATGTAAATTGA 60.624 38.462 7.23 0.00 36.72 2.57
1957 1991 2.293122 TCCGCCTCAGTTCATTTTTGTG 59.707 45.455 0.00 0.00 0.00 3.33
1959 1993 3.855689 ATCCGCCTCAGTTCATTTTTG 57.144 42.857 0.00 0.00 0.00 2.44
2249 2286 4.413520 ACCTGATTATGTGGGCATAGTCTT 59.586 41.667 10.10 0.00 41.80 3.01
2251 2288 4.357918 ACCTGATTATGTGGGCATAGTC 57.642 45.455 0.00 0.00 41.70 2.59
2252 2289 4.796110 AACCTGATTATGTGGGCATAGT 57.204 40.909 0.00 0.00 38.64 2.12
2253 2290 5.179368 CGTTAACCTGATTATGTGGGCATAG 59.821 44.000 0.00 0.00 38.64 2.23
2254 2291 5.060506 CGTTAACCTGATTATGTGGGCATA 58.939 41.667 0.00 0.00 36.58 3.14
2255 2292 3.882888 CGTTAACCTGATTATGTGGGCAT 59.117 43.478 0.00 0.00 39.03 4.40
2256 2293 3.275143 CGTTAACCTGATTATGTGGGCA 58.725 45.455 0.00 0.00 0.00 5.36
2257 2294 2.032924 GCGTTAACCTGATTATGTGGGC 59.967 50.000 0.00 0.00 0.00 5.36
2258 2295 2.286833 CGCGTTAACCTGATTATGTGGG 59.713 50.000 0.00 0.00 0.00 4.61
2573 2614 4.287326 TGTGGTATAACAATGAGTGTGGGA 59.713 41.667 0.00 0.00 40.60 4.37
2619 2661 6.086785 CTCTGAATGAGTAGCATCAGATCA 57.913 41.667 4.94 0.00 38.86 2.92
2816 2858 3.083997 CCTCCACCGGAAGAGGGG 61.084 72.222 27.15 15.51 45.08 4.79
2912 2954 3.431673 TGTGATGGTAATGTGCCAGAA 57.568 42.857 0.00 0.00 39.65 3.02
3273 3315 2.906389 TCAGTAAGAAGTCATGGCCTGT 59.094 45.455 3.32 0.00 0.00 4.00
3274 3316 3.616956 TCAGTAAGAAGTCATGGCCTG 57.383 47.619 3.32 0.00 0.00 4.85
3275 3317 4.851639 ATTCAGTAAGAAGTCATGGCCT 57.148 40.909 3.32 0.00 40.15 5.19
3358 3402 6.817765 AAGAACTGAGATTTGCGGAAATAA 57.182 33.333 15.29 3.58 31.58 1.40
3809 3854 3.466791 CTGCGGAGGGGGCATACAG 62.467 68.421 0.00 0.00 40.09 2.74
4179 4224 0.394899 GGTTGATGAGGGCCTCCAAG 60.395 60.000 30.03 0.00 34.83 3.61
4322 4367 4.457834 AATCCTAGTTTGTCCTCGACAG 57.542 45.455 0.00 0.00 43.69 3.51
4595 4640 2.151502 TCAACTTTTTCAGGTGGGCA 57.848 45.000 0.00 0.00 41.17 5.36
4793 4838 3.616219 TGGAACATCTTTTATCACCCGG 58.384 45.455 0.00 0.00 0.00 5.73
4816 4861 3.810310 AAGCAGTGATAGCAGGAGTAC 57.190 47.619 0.00 0.00 0.00 2.73
4826 4871 3.415212 AGCAGAAGCAAAAGCAGTGATA 58.585 40.909 0.00 0.00 45.49 2.15
4853 4898 1.003580 GGAGAAACACATCCTGCCTGA 59.996 52.381 0.00 0.00 32.51 3.86
4861 4906 3.056465 AGGAGAACGAGGAGAAACACATC 60.056 47.826 0.00 0.00 0.00 3.06
5056 5101 5.496556 CATGTCCTGTAGTATTGTTGGGAA 58.503 41.667 0.00 0.00 0.00 3.97
5057 5102 4.080582 CCATGTCCTGTAGTATTGTTGGGA 60.081 45.833 0.00 0.00 0.00 4.37
5176 5221 3.216800 GGTGAAGCTGGCATATCATCAA 58.783 45.455 0.00 0.00 0.00 2.57
5414 5460 1.647084 GTTGTTGTGAGGCACGTCC 59.353 57.895 0.00 0.00 37.14 4.79
5433 5479 5.880887 GGAAGTACCTCCATCCTAAAAACAG 59.119 44.000 5.58 0.00 35.36 3.16
5450 5496 2.165437 CTGGTGAGAGCTGAGGAAGTAC 59.835 54.545 0.00 0.00 0.00 2.73
5456 5502 6.663093 AGATATATTACTGGTGAGAGCTGAGG 59.337 42.308 0.00 0.00 0.00 3.86
5484 5530 9.515226 GCCCTAATACTTTTAATGGATATGTGA 57.485 33.333 0.00 0.00 0.00 3.58
5485 5531 8.450964 CGCCCTAATACTTTTAATGGATATGTG 58.549 37.037 0.00 0.00 0.00 3.21
5486 5532 8.161425 ACGCCCTAATACTTTTAATGGATATGT 58.839 33.333 0.00 0.00 0.00 2.29
5487 5533 8.450964 CACGCCCTAATACTTTTAATGGATATG 58.549 37.037 0.00 0.00 0.00 1.78
5563 5623 6.663093 TGTGCCAATGAACCAAAATATCTACT 59.337 34.615 0.00 0.00 0.00 2.57
5630 5690 4.309099 CTTGCAGGCTTTCAAAAAGCATA 58.691 39.130 21.92 2.77 44.71 3.14
5906 5967 8.394971 TGACCTCGCATCAATAATGAAAATAT 57.605 30.769 0.00 0.00 39.49 1.28
5982 6043 3.053095 AGGAACGGAGGGAGTATAAGACA 60.053 47.826 0.00 0.00 0.00 3.41
5991 6052 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5992 6053 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5993 6054 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5994 6055 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5995 6056 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5996 6057 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5997 6058 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6014 6075 9.436957 GTAGTCCATTTGAAATGTCTAGAAAGA 57.563 33.333 15.93 1.84 0.00 2.52
6015 6076 8.669243 GGTAGTCCATTTGAAATGTCTAGAAAG 58.331 37.037 15.93 0.00 0.00 2.62
6016 6077 8.160765 TGGTAGTCCATTTGAAATGTCTAGAAA 58.839 33.333 15.93 0.00 39.03 2.52
6017 6078 7.606456 GTGGTAGTCCATTTGAAATGTCTAGAA 59.394 37.037 15.93 7.22 46.20 2.10
6018 6079 7.103641 GTGGTAGTCCATTTGAAATGTCTAGA 58.896 38.462 15.93 4.16 46.20 2.43
6019 6080 6.878923 TGTGGTAGTCCATTTGAAATGTCTAG 59.121 38.462 15.93 1.90 46.20 2.43
6020 6081 6.774673 TGTGGTAGTCCATTTGAAATGTCTA 58.225 36.000 15.93 13.97 46.20 2.59
6021 6082 5.630121 TGTGGTAGTCCATTTGAAATGTCT 58.370 37.500 15.93 14.81 46.20 3.41
6022 6083 5.957842 TGTGGTAGTCCATTTGAAATGTC 57.042 39.130 15.93 9.10 46.20 3.06
6023 6084 7.068593 CCATATGTGGTAGTCCATTTGAAATGT 59.931 37.037 15.93 1.43 46.20 2.71
6024 6085 7.285172 TCCATATGTGGTAGTCCATTTGAAATG 59.715 37.037 10.84 10.84 46.20 2.32
6025 6086 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
6026 6087 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
6027 6088 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
6028 6089 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
6029 6090 6.298361 TCATCCATATGTGGTAGTCCATTTG 58.702 40.000 8.51 0.00 46.20 2.32
6030 6091 6.514012 TCATCCATATGTGGTAGTCCATTT 57.486 37.500 8.51 0.00 46.20 2.32
6031 6092 6.514012 TTCATCCATATGTGGTAGTCCATT 57.486 37.500 8.51 0.00 46.20 3.16
6032 6093 6.044754 ACATTCATCCATATGTGGTAGTCCAT 59.955 38.462 8.51 0.00 46.20 3.41
6033 6094 5.369404 ACATTCATCCATATGTGGTAGTCCA 59.631 40.000 8.51 0.00 46.16 4.02
6034 6095 5.869579 ACATTCATCCATATGTGGTAGTCC 58.130 41.667 8.51 0.00 46.16 3.85
6035 6096 7.815068 GTCTACATTCATCCATATGTGGTAGTC 59.185 40.741 8.51 0.00 46.16 2.59
6036 6097 7.290014 TGTCTACATTCATCCATATGTGGTAGT 59.710 37.037 8.51 2.72 46.16 2.73
6037 6098 7.670364 TGTCTACATTCATCCATATGTGGTAG 58.330 38.462 8.51 2.74 46.16 3.18
6038 6099 7.610580 TGTCTACATTCATCCATATGTGGTA 57.389 36.000 8.51 0.00 46.16 3.25
6039 6100 6.499106 TGTCTACATTCATCCATATGTGGT 57.501 37.500 8.51 0.00 46.16 4.16
6040 6101 9.676861 AATATGTCTACATTCATCCATATGTGG 57.323 33.333 1.19 1.19 41.02 4.17
6072 6133 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6073 6134 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6074 6135 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6075 6136 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6076 6137 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6077 6138 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6078 6139 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6079 6140 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6080 6141 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6081 6142 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6082 6143 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6083 6144 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
6084 6145 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
6085 6146 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6086 6147 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6087 6148 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6088 6149 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6089 6150 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6090 6151 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6091 6152 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6092 6153 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
6093 6154 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
6094 6155 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
6095 6156 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
6104 6165 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
6122 6183 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
6123 6184 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
6124 6185 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
6125 6186 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
6126 6187 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
6127 6188 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
6128 6189 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
6129 6190 9.853177 AATACTCCCTCTGTTCCTAAATATTTG 57.147 33.333 11.05 1.40 0.00 2.32
6131 6192 9.853177 CAAATACTCCCTCTGTTCCTAAATATT 57.147 33.333 0.00 0.00 0.00 1.28
6132 6193 8.440771 CCAAATACTCCCTCTGTTCCTAAATAT 58.559 37.037 0.00 0.00 0.00 1.28
6133 6194 7.404980 ACCAAATACTCCCTCTGTTCCTAAATA 59.595 37.037 0.00 0.00 0.00 1.40
6134 6195 6.217693 ACCAAATACTCCCTCTGTTCCTAAAT 59.782 38.462 0.00 0.00 0.00 1.40
6135 6196 5.550403 ACCAAATACTCCCTCTGTTCCTAAA 59.450 40.000 0.00 0.00 0.00 1.85
6136 6197 5.098663 ACCAAATACTCCCTCTGTTCCTAA 58.901 41.667 0.00 0.00 0.00 2.69
6137 6198 4.695606 ACCAAATACTCCCTCTGTTCCTA 58.304 43.478 0.00 0.00 0.00 2.94
6138 6199 3.532102 ACCAAATACTCCCTCTGTTCCT 58.468 45.455 0.00 0.00 0.00 3.36
6139 6200 4.302559 AACCAAATACTCCCTCTGTTCC 57.697 45.455 0.00 0.00 0.00 3.62
6140 6201 8.019656 TCTATAACCAAATACTCCCTCTGTTC 57.980 38.462 0.00 0.00 0.00 3.18
6141 6202 7.071321 CCTCTATAACCAAATACTCCCTCTGTT 59.929 40.741 0.00 0.00 0.00 3.16
6142 6203 6.555360 CCTCTATAACCAAATACTCCCTCTGT 59.445 42.308 0.00 0.00 0.00 3.41
6143 6204 6.782988 TCCTCTATAACCAAATACTCCCTCTG 59.217 42.308 0.00 0.00 0.00 3.35
6144 6205 6.935036 TCCTCTATAACCAAATACTCCCTCT 58.065 40.000 0.00 0.00 0.00 3.69
6145 6206 7.290481 ACTTCCTCTATAACCAAATACTCCCTC 59.710 40.741 0.00 0.00 0.00 4.30
6146 6207 7.140304 ACTTCCTCTATAACCAAATACTCCCT 58.860 38.462 0.00 0.00 0.00 4.20
6147 6208 7.376335 ACTTCCTCTATAACCAAATACTCCC 57.624 40.000 0.00 0.00 0.00 4.30
6232 6293 4.141158 AGGGTATAAAAAGATGGGAGCCTG 60.141 45.833 0.00 0.00 32.32 4.85
6315 6376 3.782656 TTTTGGGACAGAGGGAGTAAC 57.217 47.619 0.00 0.00 42.39 2.50
6613 6700 2.433868 TTGTCCGTTCTTCTTCCTCG 57.566 50.000 0.00 0.00 0.00 4.63
6731 6818 2.350388 CCTTTTGCTCATTACGCACGTT 60.350 45.455 0.00 0.00 37.07 3.99
6765 6852 1.912417 AGACGCAGGTTCAGTAGTCT 58.088 50.000 0.00 0.00 34.54 3.24
6920 7007 4.083271 GGTTGAAGTGTTATGACCAGAAGC 60.083 45.833 0.00 0.00 0.00 3.86
6957 7044 1.800805 CTCCGTCATGTTGCTCTGTT 58.199 50.000 0.00 0.00 0.00 3.16
7077 7164 3.459232 TCACACTTGACTTCTCACCAG 57.541 47.619 0.00 0.00 0.00 4.00
7180 7267 2.598394 TTCTTGCTGTGGGCTGGC 60.598 61.111 0.00 0.00 42.39 4.85
7229 7316 4.387598 GAAGTAGCAGGAGCATCATCAAT 58.612 43.478 0.00 0.00 45.49 2.57
7304 7391 3.750652 CCAGCGGTTTTTATTTTTGGCAT 59.249 39.130 0.00 0.00 0.00 4.40
7305 7392 3.134458 CCAGCGGTTTTTATTTTTGGCA 58.866 40.909 0.00 0.00 0.00 4.92
7390 7477 4.119556 TCCAAATGAAATACCACCCACA 57.880 40.909 0.00 0.00 0.00 4.17
7654 7741 1.066215 CGTGTGACATTCTCCCCATCA 60.066 52.381 0.00 0.00 0.00 3.07
7922 8009 0.811915 TCTGCTCGCTCAGAAGGTAC 59.188 55.000 4.33 0.00 39.89 3.34
7974 8061 1.159285 CTGCCGATGCTTGTCAGAAA 58.841 50.000 0.00 0.00 38.71 2.52
7989 8076 0.595095 CTTGTCAGGTTCAAGCTGCC 59.405 55.000 11.99 0.43 43.02 4.85
8265 8358 2.163509 TCCAGTGTGCTCTAGAGTGTC 58.836 52.381 20.75 11.68 0.00 3.67
8381 8474 9.046296 CATGTCACCTTTACCTTGATTACTATC 57.954 37.037 0.00 0.00 0.00 2.08
8623 8716 3.551846 GAAGTCTGAGGGTTTGTTGGAA 58.448 45.455 0.00 0.00 0.00 3.53
8788 8887 1.700042 AATTAGGAGCTGGAGCCGGG 61.700 60.000 2.18 0.00 43.38 5.73
8884 8983 7.739498 AGAATGCTGAAATTTTTCATTTGCT 57.261 28.000 6.21 6.03 45.26 3.91
8895 8994 6.660949 AGGCAGTAAACTAGAATGCTGAAATT 59.339 34.615 16.93 2.13 37.08 1.82
8974 9073 2.095567 CCGAGAAACATTCAACCTGCTG 60.096 50.000 0.00 0.00 0.00 4.41
9051 9150 0.827507 GCCCAAAAGCCCTGAGAACA 60.828 55.000 0.00 0.00 0.00 3.18
9114 9213 2.479566 AAAGCATCACATCTCACCGT 57.520 45.000 0.00 0.00 0.00 4.83
9443 9548 3.326588 TGCTGCTAGTCTGGTAGGAAAAA 59.673 43.478 0.00 0.00 0.00 1.94
9445 9550 2.536066 TGCTGCTAGTCTGGTAGGAAA 58.464 47.619 0.00 0.00 0.00 3.13
9452 9557 1.610102 GGCCATATGCTGCTAGTCTGG 60.610 57.143 0.00 2.36 40.92 3.86
9498 9603 3.426568 GAGGAAGGTGCGCTGTGC 61.427 66.667 9.73 6.19 46.70 4.57
9510 9615 6.039616 CACAATTTTGAAAACTTCGGAGGAA 58.960 36.000 0.00 0.00 0.00 3.36
9511 9616 5.587289 CACAATTTTGAAAACTTCGGAGGA 58.413 37.500 0.00 0.00 0.00 3.71
9512 9617 4.209080 GCACAATTTTGAAAACTTCGGAGG 59.791 41.667 0.00 0.00 0.00 4.30
9513 9618 4.803088 TGCACAATTTTGAAAACTTCGGAG 59.197 37.500 0.00 0.00 0.00 4.63
9514 9619 4.564769 GTGCACAATTTTGAAAACTTCGGA 59.435 37.500 13.17 0.00 0.00 4.55
9515 9620 4.260172 GGTGCACAATTTTGAAAACTTCGG 60.260 41.667 20.43 0.00 0.00 4.30
9516 9621 4.566360 AGGTGCACAATTTTGAAAACTTCG 59.434 37.500 20.43 0.00 0.00 3.79
9517 9622 6.421377 AAGGTGCACAATTTTGAAAACTTC 57.579 33.333 20.43 0.00 0.00 3.01
9518 9623 5.353956 GGAAGGTGCACAATTTTGAAAACTT 59.646 36.000 20.43 7.70 0.00 2.66
9519 9624 4.875536 GGAAGGTGCACAATTTTGAAAACT 59.124 37.500 20.43 0.00 0.00 2.66
9520 9625 4.260172 CGGAAGGTGCACAATTTTGAAAAC 60.260 41.667 20.43 0.00 0.00 2.43
9521 9626 3.868077 CGGAAGGTGCACAATTTTGAAAA 59.132 39.130 20.43 0.00 0.00 2.29
9522 9627 3.118956 ACGGAAGGTGCACAATTTTGAAA 60.119 39.130 20.43 0.00 0.00 2.69
9523 9628 2.428890 ACGGAAGGTGCACAATTTTGAA 59.571 40.909 20.43 0.00 0.00 2.69
9524 9629 2.028130 ACGGAAGGTGCACAATTTTGA 58.972 42.857 20.43 0.00 0.00 2.69
9525 9630 2.393764 GACGGAAGGTGCACAATTTTG 58.606 47.619 20.43 11.10 0.00 2.44
9526 9631 1.339929 GGACGGAAGGTGCACAATTTT 59.660 47.619 20.43 7.00 36.89 1.82
9527 9632 0.958822 GGACGGAAGGTGCACAATTT 59.041 50.000 20.43 9.67 36.89 1.82
9528 9633 1.234615 CGGACGGAAGGTGCACAATT 61.235 55.000 20.43 12.81 36.67 2.32
9529 9634 1.671054 CGGACGGAAGGTGCACAAT 60.671 57.895 20.43 6.21 36.67 2.71
9530 9635 2.280524 CGGACGGAAGGTGCACAA 60.281 61.111 20.43 0.00 36.67 3.33
9531 9636 2.709125 CTTCGGACGGAAGGTGCACA 62.709 60.000 20.43 0.00 46.89 4.57
9532 9637 2.027625 CTTCGGACGGAAGGTGCAC 61.028 63.158 8.80 8.80 46.89 4.57
9533 9638 2.342279 CTTCGGACGGAAGGTGCA 59.658 61.111 13.52 0.00 46.89 4.57
9573 9678 1.821216 ACCCCACGTAATCAGCTTTG 58.179 50.000 0.00 0.00 0.00 2.77
9574 9679 2.556622 CAAACCCCACGTAATCAGCTTT 59.443 45.455 0.00 0.00 0.00 3.51
9591 9696 9.370126 CGTAAATATCAGCAGTTATTAGCAAAC 57.630 33.333 0.00 0.00 0.00 2.93
9616 9721 9.968620 GTTTCGTAAAATGTTGAATTAGTTTCG 57.031 29.630 0.00 0.00 37.13 3.46
9645 9750 9.753674 TCTCCTTACTATCCAAAAACATTGAAT 57.246 29.630 0.00 0.00 0.00 2.57
9646 9751 9.231297 CTCTCCTTACTATCCAAAAACATTGAA 57.769 33.333 0.00 0.00 0.00 2.69
9647 9752 8.383175 ACTCTCCTTACTATCCAAAAACATTGA 58.617 33.333 0.00 0.00 0.00 2.57
9648 9753 8.567285 ACTCTCCTTACTATCCAAAAACATTG 57.433 34.615 0.00 0.00 0.00 2.82
9656 9761 9.710818 ACTGTTATTACTCTCCTTACTATCCAA 57.289 33.333 0.00 0.00 0.00 3.53
9710 10056 4.217983 ACTTGTAAACTGAGACGGAGGTAG 59.782 45.833 0.00 0.00 0.00 3.18
9713 10059 3.576648 GACTTGTAAACTGAGACGGAGG 58.423 50.000 0.00 0.00 0.00 4.30
9714 10060 3.256136 AGGACTTGTAAACTGAGACGGAG 59.744 47.826 0.00 0.00 0.00 4.63
9715 10061 3.228453 AGGACTTGTAAACTGAGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
9716 10062 3.662247 AGGACTTGTAAACTGAGACGG 57.338 47.619 0.00 0.00 0.00 4.79
9717 10063 4.156915 CGTAGGACTTGTAAACTGAGACG 58.843 47.826 0.00 0.00 0.00 4.18
9718 10064 4.916249 CACGTAGGACTTGTAAACTGAGAC 59.084 45.833 0.00 0.00 0.00 3.36
9719 10065 4.581824 ACACGTAGGACTTGTAAACTGAGA 59.418 41.667 0.00 0.00 28.16 3.27
9720 10066 4.868067 ACACGTAGGACTTGTAAACTGAG 58.132 43.478 0.00 0.00 28.16 3.35
9721 10067 4.924305 ACACGTAGGACTTGTAAACTGA 57.076 40.909 0.00 0.00 28.16 3.41
9722 10068 6.749118 GGTATACACGTAGGACTTGTAAACTG 59.251 42.308 5.01 0.00 36.60 3.16
9723 10069 6.660949 AGGTATACACGTAGGACTTGTAAACT 59.339 38.462 5.01 0.00 36.60 2.66
9724 10070 6.749118 CAGGTATACACGTAGGACTTGTAAAC 59.251 42.308 5.01 0.00 36.60 2.01
9725 10071 6.127647 CCAGGTATACACGTAGGACTTGTAAA 60.128 42.308 5.01 0.00 36.60 2.01
9726 10072 5.357878 CCAGGTATACACGTAGGACTTGTAA 59.642 44.000 5.01 0.00 36.60 2.41
9727 10073 4.883585 CCAGGTATACACGTAGGACTTGTA 59.116 45.833 5.01 0.00 37.27 2.41
9728 10074 3.698040 CCAGGTATACACGTAGGACTTGT 59.302 47.826 5.01 0.00 34.78 3.16
9729 10075 3.698040 ACCAGGTATACACGTAGGACTTG 59.302 47.826 5.01 0.00 0.00 3.16
9730 10076 3.973425 ACCAGGTATACACGTAGGACTT 58.027 45.455 5.01 0.00 0.00 3.01
9731 10077 3.659183 ACCAGGTATACACGTAGGACT 57.341 47.619 5.01 0.00 0.00 3.85
9732 10078 3.445096 ACAACCAGGTATACACGTAGGAC 59.555 47.826 5.01 0.00 0.00 3.85
9733 10079 3.700538 ACAACCAGGTATACACGTAGGA 58.299 45.455 5.01 0.00 0.00 2.94
9734 10080 4.460948 AACAACCAGGTATACACGTAGG 57.539 45.455 5.01 1.43 0.00 3.18
9735 10081 8.483307 AAATTAACAACCAGGTATACACGTAG 57.517 34.615 5.01 0.00 0.00 3.51
9736 10082 9.935241 TTAAATTAACAACCAGGTATACACGTA 57.065 29.630 5.01 0.00 0.00 3.57
9737 10083 8.845413 TTAAATTAACAACCAGGTATACACGT 57.155 30.769 5.01 0.00 0.00 4.49
9738 10084 9.925268 GATTAAATTAACAACCAGGTATACACG 57.075 33.333 5.01 0.00 0.00 4.49
9742 10088 9.411189 GGGTGATTAAATTAACAACCAGGTATA 57.589 33.333 16.04 0.00 39.58 1.47
9743 10089 8.119891 AGGGTGATTAAATTAACAACCAGGTAT 58.880 33.333 17.94 2.40 41.92 2.73
9744 10090 7.394923 CAGGGTGATTAAATTAACAACCAGGTA 59.605 37.037 17.94 0.00 41.92 3.08
9745 10091 6.210584 CAGGGTGATTAAATTAACAACCAGGT 59.789 38.462 17.94 0.00 41.92 4.00
9746 10092 6.435904 TCAGGGTGATTAAATTAACAACCAGG 59.564 38.462 17.94 12.37 41.92 4.45
9747 10093 7.461182 TCAGGGTGATTAAATTAACAACCAG 57.539 36.000 17.94 12.95 41.92 4.00
9748 10094 9.707957 ATATCAGGGTGATTAAATTAACAACCA 57.292 29.630 17.94 5.59 41.92 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.