Multiple sequence alignment - TraesCS5A01G084600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G084600 chr5A 100.000 4383 0 0 1 4383 110375403 110371021 0.000000e+00 8094.0
1 TraesCS5A01G084600 chr5A 92.746 193 10 3 2819 3008 110372396 110372205 4.320000e-70 276.0
2 TraesCS5A01G084600 chr5A 92.746 193 10 3 3008 3199 110372585 110372396 4.320000e-70 276.0
3 TraesCS5A01G084600 chr5A 100.000 34 0 0 407 440 323564320 323564353 3.660000e-06 63.9
4 TraesCS5A01G084600 chr5D 91.622 2781 175 32 458 3199 107569198 107566437 0.000000e+00 3792.0
5 TraesCS5A01G084600 chr5D 94.151 872 41 7 2819 3687 107566623 107565759 0.000000e+00 1319.0
6 TraesCS5A01G084600 chr5D 92.577 714 30 14 3682 4383 107565683 107564981 0.000000e+00 1003.0
7 TraesCS5A01G084600 chr5D 88.056 360 42 1 5 363 440255705 440255346 4.050000e-115 425.0
8 TraesCS5A01G084600 chr5D 92.784 194 9 2 3009 3199 107566814 107566623 4.320000e-70 276.0
9 TraesCS5A01G084600 chr5D 91.192 193 13 3 2819 3008 107566437 107566246 4.350000e-65 259.0
10 TraesCS5A01G084600 chr5B 91.147 1909 126 19 880 2767 116845192 116843306 0.000000e+00 2549.0
11 TraesCS5A01G084600 chr5B 93.177 894 42 14 2805 3687 116843304 116842419 0.000000e+00 1295.0
12 TraesCS5A01G084600 chr5B 89.430 719 40 11 3682 4383 116842377 116841678 0.000000e+00 874.0
13 TraesCS5A01G084600 chr5B 92.147 191 10 4 3009 3199 116843289 116843104 9.350000e-67 265.0
14 TraesCS5A01G084600 chr5B 93.855 179 6 2 679 852 116845365 116845187 9.350000e-67 265.0
15 TraesCS5A01G084600 chr5B 90.674 193 12 4 2819 3006 116843104 116842913 7.280000e-63 252.0
16 TraesCS5A01G084600 chr5B 90.659 182 11 5 517 693 116846172 116845992 2.040000e-58 237.0
17 TraesCS5A01G084600 chr5B 97.436 39 0 1 4322 4360 234908391 234908354 1.020000e-06 65.8
18 TraesCS5A01G084600 chr3D 91.549 355 27 3 11 363 328839688 328839335 1.830000e-133 486.0
19 TraesCS5A01G084600 chr3D 91.292 356 30 1 9 363 576292188 576291833 6.590000e-133 484.0
20 TraesCS5A01G084600 chr7D 90.634 363 34 0 1 363 390335590 390335952 2.370000e-132 483.0
21 TraesCS5A01G084600 chr4D 90.909 352 31 1 5 355 319530616 319530265 5.130000e-129 472.0
22 TraesCS5A01G084600 chr4D 90.251 359 33 2 5 363 319524727 319524371 6.640000e-128 468.0
23 TraesCS5A01G084600 chr4D 76.280 371 73 12 1 363 441597003 441596640 2.690000e-42 183.0
24 TraesCS5A01G084600 chr4B 90.278 360 34 1 5 363 401891239 401891598 1.850000e-128 470.0
25 TraesCS5A01G084600 chr4B 88.827 358 39 1 5 362 401897118 401897474 5.200000e-119 438.0
26 TraesCS5A01G084600 chr3B 90.028 361 33 3 5 363 399017765 399017406 8.590000e-127 464.0
27 TraesCS5A01G084600 chr3B 97.561 41 1 0 407 447 759678065 759678025 2.190000e-08 71.3
28 TraesCS5A01G084600 chr2D 83.990 381 35 13 5 363 74490412 74490788 4.200000e-90 342.0
29 TraesCS5A01G084600 chr2A 81.894 359 45 13 5 345 727120027 727120383 7.170000e-73 285.0
30 TraesCS5A01G084600 chr6D 74.214 477 81 20 4 440 300574167 300573693 1.260000e-35 161.0
31 TraesCS5A01G084600 chr1A 76.250 320 65 10 49 363 353721258 353720945 4.540000e-35 159.0
32 TraesCS5A01G084600 chr4A 74.845 322 68 12 49 363 251464207 251463892 2.750000e-27 134.0
33 TraesCS5A01G084600 chr6B 100.000 35 0 0 407 441 268917130 268917096 1.020000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G084600 chr5A 110371021 110375403 4382 True 2882.000000 8094 95.164000 1 4383 3 chr5A.!!$R1 4382
1 TraesCS5A01G084600 chr5D 107564981 107569198 4217 True 1329.800000 3792 92.465200 458 4383 5 chr5D.!!$R2 3925
2 TraesCS5A01G084600 chr5B 116841678 116846172 4494 True 819.571429 2549 91.584143 517 4383 7 chr5B.!!$R2 3866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.037697 TAAGCTTCCTTGCGCTCGAA 60.038 50.0 9.73 6.58 34.96 3.71 F
172 173 0.039798 GACGTACGAGGTGAGCACAA 60.040 55.0 24.41 0.00 0.00 3.33 F
179 180 0.179018 GAGGTGAGCACAACCCAGTT 60.179 55.0 0.00 0.00 33.63 3.16 F
445 446 0.317103 ACAGAGACGTATCATCGCGC 60.317 55.0 13.45 0.00 0.00 6.86 F
448 449 0.387367 GAGACGTATCATCGCGCCAT 60.387 55.0 5.07 0.00 0.00 4.40 F
449 450 0.387367 AGACGTATCATCGCGCCATC 60.387 55.0 0.00 0.00 0.00 3.51 F
492 493 0.396417 CACAGATCCGGAGAGGGAGT 60.396 60.0 11.34 0.00 40.02 3.85 F
795 1443 0.606673 GGAGGTCACAAGGACTTGGC 60.607 60.0 15.72 6.12 46.16 4.52 F
2473 3170 0.456312 CTCGACCGTGTAAGCACCTC 60.456 60.0 0.00 0.00 42.39 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2774 1.002773 AGGTACGTGGTCACATTTCCC 59.997 52.381 0.00 0.00 0.00 3.97 R
2087 2784 3.313249 GCAAAACTGTAAAGGTACGTGGT 59.687 43.478 0.00 0.00 32.40 4.16 R
2104 2801 5.916318 AGGAAAACAACTCATCATGCAAAA 58.084 33.333 0.00 0.00 0.00 2.44 R
2369 3066 2.163412 GCCTGAATATGTGCGGTTTCAA 59.837 45.455 0.00 0.00 0.00 2.69 R
2414 3111 5.339423 TCATAGGATCCCATGTCTGACTA 57.661 43.478 18.23 0.00 0.00 2.59 R
2431 3128 7.485595 CGAGAATCAAGAGTCTATGCATCATAG 59.514 40.741 0.19 7.36 39.21 2.23 R
2473 3170 1.325640 CCGTCACTGCATCGAATTCAG 59.674 52.381 6.22 9.47 0.00 3.02 R
2517 3214 0.319900 GCTCAGAAACGAGACTGCCA 60.320 55.000 0.00 0.00 34.79 4.92 R
4330 5336 0.895530 TTTGTAGGGAGCCAGTCGAG 59.104 55.000 0.00 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.591196 CTGTCTCCCTGTTCTCTTCTG 57.409 52.381 0.00 0.00 0.00 3.02
21 22 2.896685 CTGTCTCCCTGTTCTCTTCTGT 59.103 50.000 0.00 0.00 0.00 3.41
22 23 3.309296 TGTCTCCCTGTTCTCTTCTGTT 58.691 45.455 0.00 0.00 0.00 3.16
23 24 3.711704 TGTCTCCCTGTTCTCTTCTGTTT 59.288 43.478 0.00 0.00 0.00 2.83
24 25 4.202264 TGTCTCCCTGTTCTCTTCTGTTTC 60.202 45.833 0.00 0.00 0.00 2.78
25 26 3.967326 TCTCCCTGTTCTCTTCTGTTTCA 59.033 43.478 0.00 0.00 0.00 2.69
26 27 4.061596 CTCCCTGTTCTCTTCTGTTTCAC 58.938 47.826 0.00 0.00 0.00 3.18
27 28 2.802816 CCCTGTTCTCTTCTGTTTCACG 59.197 50.000 0.00 0.00 0.00 4.35
28 29 2.221981 CCTGTTCTCTTCTGTTTCACGC 59.778 50.000 0.00 0.00 0.00 5.34
29 30 3.126831 CTGTTCTCTTCTGTTTCACGCT 58.873 45.455 0.00 0.00 0.00 5.07
30 31 3.123804 TGTTCTCTTCTGTTTCACGCTC 58.876 45.455 0.00 0.00 0.00 5.03
31 32 2.440539 TCTCTTCTGTTTCACGCTCC 57.559 50.000 0.00 0.00 0.00 4.70
32 33 1.964223 TCTCTTCTGTTTCACGCTCCT 59.036 47.619 0.00 0.00 0.00 3.69
33 34 2.064762 CTCTTCTGTTTCACGCTCCTG 58.935 52.381 0.00 0.00 0.00 3.86
34 35 1.412710 TCTTCTGTTTCACGCTCCTGT 59.587 47.619 0.00 0.00 0.00 4.00
35 36 2.158957 TCTTCTGTTTCACGCTCCTGTT 60.159 45.455 0.00 0.00 0.00 3.16
36 37 2.325583 TCTGTTTCACGCTCCTGTTT 57.674 45.000 0.00 0.00 0.00 2.83
37 38 2.639065 TCTGTTTCACGCTCCTGTTTT 58.361 42.857 0.00 0.00 0.00 2.43
38 39 2.612212 TCTGTTTCACGCTCCTGTTTTC 59.388 45.455 0.00 0.00 0.00 2.29
39 40 2.614057 CTGTTTCACGCTCCTGTTTTCT 59.386 45.455 0.00 0.00 0.00 2.52
40 41 2.354510 TGTTTCACGCTCCTGTTTTCTG 59.645 45.455 0.00 0.00 0.00 3.02
41 42 1.593196 TTCACGCTCCTGTTTTCTGG 58.407 50.000 0.00 0.00 39.79 3.86
42 43 0.884704 TCACGCTCCTGTTTTCTGGC 60.885 55.000 0.00 0.00 38.56 4.85
43 44 1.600916 ACGCTCCTGTTTTCTGGCC 60.601 57.895 0.00 0.00 38.56 5.36
44 45 2.680913 CGCTCCTGTTTTCTGGCCG 61.681 63.158 0.00 0.00 38.56 6.13
45 46 1.302511 GCTCCTGTTTTCTGGCCGA 60.303 57.895 0.00 0.00 38.56 5.54
46 47 0.889186 GCTCCTGTTTTCTGGCCGAA 60.889 55.000 0.00 1.58 38.56 4.30
47 48 1.604604 CTCCTGTTTTCTGGCCGAAA 58.395 50.000 15.70 15.70 39.76 3.46
48 49 1.953686 CTCCTGTTTTCTGGCCGAAAA 59.046 47.619 22.92 22.92 46.43 2.29
52 53 2.796500 TTTTCTGGCCGAAAACCGT 58.204 47.368 22.92 0.00 44.42 4.83
53 54 1.104630 TTTTCTGGCCGAAAACCGTT 58.895 45.000 22.92 0.00 44.42 4.44
54 55 1.104630 TTTCTGGCCGAAAACCGTTT 58.895 45.000 16.86 0.00 38.62 3.60
55 56 0.664224 TTCTGGCCGAAAACCGTTTC 59.336 50.000 0.00 0.00 39.90 2.78
56 57 0.179040 TCTGGCCGAAAACCGTTTCT 60.179 50.000 0.00 0.00 40.94 2.52
57 58 0.666374 CTGGCCGAAAACCGTTTCTT 59.334 50.000 0.00 0.00 40.94 2.52
58 59 1.874872 CTGGCCGAAAACCGTTTCTTA 59.125 47.619 0.00 0.00 40.94 2.10
59 60 2.486592 CTGGCCGAAAACCGTTTCTTAT 59.513 45.455 0.00 0.00 40.94 1.73
60 61 3.672808 TGGCCGAAAACCGTTTCTTATA 58.327 40.909 0.00 0.00 40.94 0.98
61 62 4.263435 TGGCCGAAAACCGTTTCTTATAT 58.737 39.130 0.00 0.00 40.94 0.86
62 63 4.701171 TGGCCGAAAACCGTTTCTTATATT 59.299 37.500 0.00 0.00 40.94 1.28
63 64 5.183522 TGGCCGAAAACCGTTTCTTATATTT 59.816 36.000 0.00 0.00 40.94 1.40
64 65 5.740569 GGCCGAAAACCGTTTCTTATATTTC 59.259 40.000 0.00 0.00 40.94 2.17
65 66 5.740569 GCCGAAAACCGTTTCTTATATTTCC 59.259 40.000 0.00 0.00 40.94 3.13
66 67 5.961263 CCGAAAACCGTTTCTTATATTTCCG 59.039 40.000 0.00 0.00 40.94 4.30
67 68 5.961263 CGAAAACCGTTTCTTATATTTCCGG 59.039 40.000 0.00 0.00 40.94 5.14
68 69 6.183360 CGAAAACCGTTTCTTATATTTCCGGA 60.183 38.462 0.00 0.00 40.94 5.14
69 70 6.673154 AAACCGTTTCTTATATTTCCGGAG 57.327 37.500 3.34 0.00 37.43 4.63
70 71 5.603170 ACCGTTTCTTATATTTCCGGAGA 57.397 39.130 3.34 0.00 37.43 3.71
71 72 6.170846 ACCGTTTCTTATATTTCCGGAGAT 57.829 37.500 12.74 12.74 37.43 2.75
72 73 6.221659 ACCGTTTCTTATATTTCCGGAGATC 58.778 40.000 11.38 0.00 37.43 2.75
73 74 5.638234 CCGTTTCTTATATTTCCGGAGATCC 59.362 44.000 11.38 0.00 36.12 3.36
86 87 3.014604 GGAGATCCGTAACTCCGATTG 57.985 52.381 0.00 0.00 42.25 2.67
87 88 2.395654 GAGATCCGTAACTCCGATTGC 58.604 52.381 0.00 0.00 0.00 3.56
88 89 1.129326 GATCCGTAACTCCGATTGCG 58.871 55.000 0.00 0.00 37.42 4.85
89 90 0.874607 ATCCGTAACTCCGATTGCGC 60.875 55.000 0.00 0.00 36.49 6.09
90 91 1.518572 CCGTAACTCCGATTGCGCT 60.519 57.895 9.73 0.00 36.49 5.92
91 92 1.631072 CGTAACTCCGATTGCGCTG 59.369 57.895 9.73 0.00 35.83 5.18
92 93 0.800683 CGTAACTCCGATTGCGCTGA 60.801 55.000 9.73 0.00 35.83 4.26
93 94 0.924090 GTAACTCCGATTGCGCTGAG 59.076 55.000 9.73 9.24 35.83 3.35
94 95 0.815095 TAACTCCGATTGCGCTGAGA 59.185 50.000 9.73 0.00 35.83 3.27
95 96 0.176680 AACTCCGATTGCGCTGAGAT 59.823 50.000 9.73 0.00 35.83 2.75
96 97 0.176680 ACTCCGATTGCGCTGAGATT 59.823 50.000 9.73 0.00 35.83 2.40
97 98 1.293924 CTCCGATTGCGCTGAGATTT 58.706 50.000 9.73 0.00 35.83 2.17
98 99 1.667724 CTCCGATTGCGCTGAGATTTT 59.332 47.619 9.73 0.00 35.83 1.82
99 100 2.866156 CTCCGATTGCGCTGAGATTTTA 59.134 45.455 9.73 0.00 35.83 1.52
100 101 3.266636 TCCGATTGCGCTGAGATTTTAA 58.733 40.909 9.73 0.00 35.83 1.52
101 102 3.063452 TCCGATTGCGCTGAGATTTTAAC 59.937 43.478 9.73 0.00 35.83 2.01
102 103 3.181511 CCGATTGCGCTGAGATTTTAACA 60.182 43.478 9.73 0.00 35.83 2.41
103 104 3.780801 CGATTGCGCTGAGATTTTAACAC 59.219 43.478 9.73 0.00 0.00 3.32
104 105 2.873170 TGCGCTGAGATTTTAACACG 57.127 45.000 9.73 0.00 0.00 4.49
105 106 2.409012 TGCGCTGAGATTTTAACACGA 58.591 42.857 9.73 0.00 0.00 4.35
106 107 3.000041 TGCGCTGAGATTTTAACACGAT 59.000 40.909 9.73 0.00 0.00 3.73
107 108 3.435327 TGCGCTGAGATTTTAACACGATT 59.565 39.130 9.73 0.00 0.00 3.34
108 109 4.083537 TGCGCTGAGATTTTAACACGATTT 60.084 37.500 9.73 0.00 0.00 2.17
109 110 4.851558 GCGCTGAGATTTTAACACGATTTT 59.148 37.500 0.00 0.00 0.00 1.82
110 111 5.342259 GCGCTGAGATTTTAACACGATTTTT 59.658 36.000 0.00 0.00 0.00 1.94
130 131 6.693315 TTTTTCCGGATATAAGCTTCCTTG 57.307 37.500 4.15 0.00 32.47 3.61
131 132 3.402628 TCCGGATATAAGCTTCCTTGC 57.597 47.619 0.00 0.00 32.47 4.01
132 133 2.069273 CCGGATATAAGCTTCCTTGCG 58.931 52.381 0.00 5.80 38.13 4.85
133 134 1.461127 CGGATATAAGCTTCCTTGCGC 59.539 52.381 0.00 0.00 38.13 6.09
134 135 2.772287 GGATATAAGCTTCCTTGCGCT 58.228 47.619 9.73 0.00 38.30 5.92
135 136 2.739379 GGATATAAGCTTCCTTGCGCTC 59.261 50.000 9.73 0.00 34.96 5.03
136 137 1.852942 TATAAGCTTCCTTGCGCTCG 58.147 50.000 9.73 0.00 34.96 5.03
137 138 0.175760 ATAAGCTTCCTTGCGCTCGA 59.824 50.000 9.73 0.00 34.96 4.04
138 139 0.037697 TAAGCTTCCTTGCGCTCGAA 60.038 50.000 9.73 6.58 34.96 3.71
139 140 1.294659 AAGCTTCCTTGCGCTCGAAG 61.295 55.000 20.36 20.36 34.96 3.79
140 141 2.029844 GCTTCCTTGCGCTCGAAGT 61.030 57.895 23.26 0.00 36.27 3.01
141 142 0.736325 GCTTCCTTGCGCTCGAAGTA 60.736 55.000 23.26 1.31 36.27 2.24
142 143 1.272781 CTTCCTTGCGCTCGAAGTAG 58.727 55.000 9.73 0.25 0.00 2.57
143 144 0.885879 TTCCTTGCGCTCGAAGTAGA 59.114 50.000 9.73 0.00 0.00 2.59
144 145 0.452184 TCCTTGCGCTCGAAGTAGAG 59.548 55.000 9.73 0.00 41.03 2.43
145 146 0.452184 CCTTGCGCTCGAAGTAGAGA 59.548 55.000 9.73 0.00 40.57 3.10
146 147 1.066303 CCTTGCGCTCGAAGTAGAGAT 59.934 52.381 9.73 0.00 40.57 2.75
147 148 2.380660 CTTGCGCTCGAAGTAGAGATC 58.619 52.381 9.73 0.00 40.57 2.75
148 149 0.663688 TGCGCTCGAAGTAGAGATCC 59.336 55.000 9.73 0.00 40.57 3.36
149 150 0.663688 GCGCTCGAAGTAGAGATCCA 59.336 55.000 0.00 0.00 40.57 3.41
150 151 1.065701 GCGCTCGAAGTAGAGATCCAA 59.934 52.381 0.00 0.00 40.57 3.53
151 152 2.722071 CGCTCGAAGTAGAGATCCAAC 58.278 52.381 0.00 0.00 40.57 3.77
152 153 2.541999 CGCTCGAAGTAGAGATCCAACC 60.542 54.545 0.00 0.00 40.57 3.77
153 154 2.541999 GCTCGAAGTAGAGATCCAACCG 60.542 54.545 0.00 0.00 40.57 4.44
154 155 2.943690 CTCGAAGTAGAGATCCAACCGA 59.056 50.000 0.00 0.00 40.57 4.69
155 156 2.681848 TCGAAGTAGAGATCCAACCGAC 59.318 50.000 0.00 0.00 0.00 4.79
156 157 2.539142 CGAAGTAGAGATCCAACCGACG 60.539 54.545 0.00 0.00 0.00 5.12
157 158 2.125773 AGTAGAGATCCAACCGACGT 57.874 50.000 0.00 0.00 0.00 4.34
158 159 3.272574 AGTAGAGATCCAACCGACGTA 57.727 47.619 0.00 0.00 0.00 3.57
159 160 2.941720 AGTAGAGATCCAACCGACGTAC 59.058 50.000 0.00 0.00 0.00 3.67
160 161 0.731417 AGAGATCCAACCGACGTACG 59.269 55.000 15.01 15.01 42.18 3.67
161 162 0.729116 GAGATCCAACCGACGTACGA 59.271 55.000 24.41 0.00 45.77 3.43
162 163 0.731417 AGATCCAACCGACGTACGAG 59.269 55.000 24.41 14.93 45.77 4.18
163 164 0.248377 GATCCAACCGACGTACGAGG 60.248 60.000 24.41 24.70 45.77 4.63
164 165 0.962356 ATCCAACCGACGTACGAGGT 60.962 55.000 25.93 25.93 45.77 3.85
165 166 1.443194 CCAACCGACGTACGAGGTG 60.443 63.158 29.73 21.86 45.77 4.00
166 167 1.575922 CAACCGACGTACGAGGTGA 59.424 57.895 29.73 0.00 45.77 4.02
167 168 0.453950 CAACCGACGTACGAGGTGAG 60.454 60.000 29.73 23.29 45.77 3.51
168 169 2.099831 CCGACGTACGAGGTGAGC 59.900 66.667 24.41 1.12 45.77 4.26
169 170 2.683859 CCGACGTACGAGGTGAGCA 61.684 63.158 24.41 0.00 45.77 4.26
170 171 1.511464 CGACGTACGAGGTGAGCAC 60.511 63.158 24.41 0.00 45.77 4.40
171 172 1.577922 GACGTACGAGGTGAGCACA 59.422 57.895 24.41 0.00 0.00 4.57
172 173 0.039798 GACGTACGAGGTGAGCACAA 60.040 55.000 24.41 0.00 0.00 3.33
173 174 0.318445 ACGTACGAGGTGAGCACAAC 60.318 55.000 24.41 0.00 0.00 3.32
174 175 1.007336 CGTACGAGGTGAGCACAACC 61.007 60.000 10.44 0.00 33.63 3.77
175 176 0.669625 GTACGAGGTGAGCACAACCC 60.670 60.000 0.00 0.00 33.63 4.11
176 177 1.116536 TACGAGGTGAGCACAACCCA 61.117 55.000 0.00 0.00 33.63 4.51
177 178 1.669115 CGAGGTGAGCACAACCCAG 60.669 63.158 0.00 0.00 33.63 4.45
178 179 1.451936 GAGGTGAGCACAACCCAGT 59.548 57.895 0.00 0.00 33.63 4.00
179 180 0.179018 GAGGTGAGCACAACCCAGTT 60.179 55.000 0.00 0.00 33.63 3.16
181 182 1.455383 GGTGAGCACAACCCAGTTGG 61.455 60.000 11.80 0.00 46.50 3.77
198 199 4.643387 GGCGTGCCCTGGTGTCTT 62.643 66.667 0.00 0.00 0.00 3.01
199 200 3.357079 GCGTGCCCTGGTGTCTTG 61.357 66.667 0.00 0.00 0.00 3.02
200 201 2.111043 CGTGCCCTGGTGTCTTGT 59.889 61.111 0.00 0.00 0.00 3.16
201 202 2.253758 CGTGCCCTGGTGTCTTGTG 61.254 63.158 0.00 0.00 0.00 3.33
202 203 1.898574 GTGCCCTGGTGTCTTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
203 204 2.282462 GCCCTGGTGTCTTGTGGG 60.282 66.667 0.00 0.00 40.74 4.61
204 205 2.436109 CCCTGGTGTCTTGTGGGG 59.564 66.667 0.00 0.00 34.46 4.96
205 206 2.436109 CCTGGTGTCTTGTGGGGG 59.564 66.667 0.00 0.00 0.00 5.40
206 207 2.282462 CTGGTGTCTTGTGGGGGC 60.282 66.667 0.00 0.00 0.00 5.80
207 208 2.776526 TGGTGTCTTGTGGGGGCT 60.777 61.111 0.00 0.00 0.00 5.19
208 209 2.282462 GGTGTCTTGTGGGGGCTG 60.282 66.667 0.00 0.00 0.00 4.85
209 210 2.515901 GTGTCTTGTGGGGGCTGT 59.484 61.111 0.00 0.00 0.00 4.40
210 211 1.898574 GTGTCTTGTGGGGGCTGTG 60.899 63.158 0.00 0.00 0.00 3.66
211 212 2.282462 GTCTTGTGGGGGCTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
212 213 3.579302 TCTTGTGGGGGCTGTGGG 61.579 66.667 0.00 0.00 0.00 4.61
222 223 3.291611 GCTGTGGGCCTCCATTTG 58.708 61.111 4.53 0.00 46.09 2.32
223 224 3.010413 GCTGTGGGCCTCCATTTGC 62.010 63.158 4.53 0.00 46.09 3.68
224 225 2.676121 TGTGGGCCTCCATTTGCG 60.676 61.111 4.53 0.00 46.09 4.85
225 226 2.676471 GTGGGCCTCCATTTGCGT 60.676 61.111 4.53 0.00 46.09 5.24
226 227 2.117206 TGGGCCTCCATTTGCGTT 59.883 55.556 4.53 0.00 38.32 4.84
227 228 2.274645 TGGGCCTCCATTTGCGTTG 61.275 57.895 4.53 0.00 38.32 4.10
228 229 1.976474 GGGCCTCCATTTGCGTTGA 60.976 57.895 0.84 0.00 0.00 3.18
229 230 1.322538 GGGCCTCCATTTGCGTTGAT 61.323 55.000 0.84 0.00 0.00 2.57
230 231 0.532115 GGCCTCCATTTGCGTTGATT 59.468 50.000 0.00 0.00 0.00 2.57
231 232 1.469767 GGCCTCCATTTGCGTTGATTC 60.470 52.381 0.00 0.00 0.00 2.52
232 233 1.469767 GCCTCCATTTGCGTTGATTCC 60.470 52.381 0.00 0.00 0.00 3.01
233 234 1.818060 CCTCCATTTGCGTTGATTCCA 59.182 47.619 0.00 0.00 0.00 3.53
234 235 2.230992 CCTCCATTTGCGTTGATTCCAA 59.769 45.455 0.00 0.00 0.00 3.53
235 236 3.504863 CTCCATTTGCGTTGATTCCAAG 58.495 45.455 0.00 0.00 32.06 3.61
236 237 2.890311 TCCATTTGCGTTGATTCCAAGT 59.110 40.909 0.00 0.00 32.06 3.16
237 238 3.057596 TCCATTTGCGTTGATTCCAAGTC 60.058 43.478 0.00 0.00 32.06 3.01
238 239 3.057315 CCATTTGCGTTGATTCCAAGTCT 60.057 43.478 0.00 0.00 32.06 3.24
239 240 4.155826 CCATTTGCGTTGATTCCAAGTCTA 59.844 41.667 0.00 0.00 32.06 2.59
240 241 5.335583 CCATTTGCGTTGATTCCAAGTCTAA 60.336 40.000 0.00 0.00 32.06 2.10
241 242 5.759506 TTTGCGTTGATTCCAAGTCTAAA 57.240 34.783 0.00 0.00 32.06 1.85
242 243 5.759506 TTGCGTTGATTCCAAGTCTAAAA 57.240 34.783 0.00 0.00 32.06 1.52
243 244 5.759506 TGCGTTGATTCCAAGTCTAAAAA 57.240 34.783 0.00 0.00 32.06 1.94
291 292 8.472683 TCCTCGTAAAATTTTATTGCATTTGG 57.527 30.769 13.54 8.07 0.00 3.28
292 293 8.307483 TCCTCGTAAAATTTTATTGCATTTGGA 58.693 29.630 13.54 9.81 0.00 3.53
293 294 8.379902 CCTCGTAAAATTTTATTGCATTTGGAC 58.620 33.333 13.54 0.00 0.00 4.02
294 295 9.139174 CTCGTAAAATTTTATTGCATTTGGACT 57.861 29.630 13.54 0.00 0.00 3.85
295 296 9.482627 TCGTAAAATTTTATTGCATTTGGACTT 57.517 25.926 13.54 0.00 0.00 3.01
296 297 9.739786 CGTAAAATTTTATTGCATTTGGACTTC 57.260 29.630 13.54 0.00 0.00 3.01
297 298 9.739786 GTAAAATTTTATTGCATTTGGACTTCG 57.260 29.630 13.54 0.00 0.00 3.79
298 299 7.961325 AAATTTTATTGCATTTGGACTTCGT 57.039 28.000 0.00 0.00 0.00 3.85
299 300 7.961325 AATTTTATTGCATTTGGACTTCGTT 57.039 28.000 0.00 0.00 0.00 3.85
300 301 7.961325 ATTTTATTGCATTTGGACTTCGTTT 57.039 28.000 0.00 0.00 0.00 3.60
301 302 6.761731 TTTATTGCATTTGGACTTCGTTTG 57.238 33.333 0.00 0.00 0.00 2.93
302 303 4.582701 ATTGCATTTGGACTTCGTTTGA 57.417 36.364 0.00 0.00 0.00 2.69
303 304 4.582701 TTGCATTTGGACTTCGTTTGAT 57.417 36.364 0.00 0.00 0.00 2.57
304 305 5.697473 TTGCATTTGGACTTCGTTTGATA 57.303 34.783 0.00 0.00 0.00 2.15
305 306 5.895636 TGCATTTGGACTTCGTTTGATAT 57.104 34.783 0.00 0.00 0.00 1.63
306 307 5.639757 TGCATTTGGACTTCGTTTGATATG 58.360 37.500 0.00 0.00 0.00 1.78
307 308 5.036737 GCATTTGGACTTCGTTTGATATGG 58.963 41.667 0.00 0.00 0.00 2.74
308 309 5.163663 GCATTTGGACTTCGTTTGATATGGA 60.164 40.000 0.00 0.00 0.00 3.41
309 310 6.460123 GCATTTGGACTTCGTTTGATATGGAT 60.460 38.462 0.00 0.00 0.00 3.41
310 311 7.255104 GCATTTGGACTTCGTTTGATATGGATA 60.255 37.037 0.00 0.00 0.00 2.59
311 312 8.786898 CATTTGGACTTCGTTTGATATGGATAT 58.213 33.333 0.00 0.00 0.00 1.63
312 313 8.746052 TTTGGACTTCGTTTGATATGGATATT 57.254 30.769 0.00 0.00 0.00 1.28
313 314 7.962964 TGGACTTCGTTTGATATGGATATTC 57.037 36.000 0.00 0.00 0.00 1.75
314 315 6.934645 TGGACTTCGTTTGATATGGATATTCC 59.065 38.462 0.00 0.00 36.96 3.01
315 316 6.090898 GGACTTCGTTTGATATGGATATTCCG 59.909 42.308 0.00 0.00 40.17 4.30
316 317 5.408604 ACTTCGTTTGATATGGATATTCCGC 59.591 40.000 0.00 0.00 40.17 5.54
317 318 3.924073 TCGTTTGATATGGATATTCCGCG 59.076 43.478 0.00 0.00 40.17 6.46
318 319 3.924073 CGTTTGATATGGATATTCCGCGA 59.076 43.478 8.23 0.00 40.17 5.87
319 320 4.387559 CGTTTGATATGGATATTCCGCGAA 59.612 41.667 8.23 0.00 40.17 4.70
320 321 5.107259 CGTTTGATATGGATATTCCGCGAAA 60.107 40.000 8.23 0.00 40.17 3.46
321 322 5.856126 TTGATATGGATATTCCGCGAAAC 57.144 39.130 8.23 0.00 40.17 2.78
322 323 4.888917 TGATATGGATATTCCGCGAAACA 58.111 39.130 8.23 0.00 40.17 2.83
323 324 5.301555 TGATATGGATATTCCGCGAAACAA 58.698 37.500 8.23 0.00 40.17 2.83
324 325 5.760743 TGATATGGATATTCCGCGAAACAAA 59.239 36.000 8.23 0.00 40.17 2.83
325 326 4.974368 ATGGATATTCCGCGAAACAAAA 57.026 36.364 8.23 0.00 40.17 2.44
326 327 4.768130 TGGATATTCCGCGAAACAAAAA 57.232 36.364 8.23 0.00 40.17 1.94
354 355 3.473923 AAAAACAGGAAGTGGCAATGG 57.526 42.857 0.00 0.00 0.00 3.16
355 356 1.341080 AAACAGGAAGTGGCAATGGG 58.659 50.000 0.00 0.00 0.00 4.00
356 357 1.187567 AACAGGAAGTGGCAATGGGC 61.188 55.000 0.00 0.00 43.74 5.36
363 364 2.525075 TGGCAATGGGCACTGGAA 59.475 55.556 0.00 0.00 45.76 3.53
364 365 1.078891 TGGCAATGGGCACTGGAAT 59.921 52.632 0.00 0.00 45.76 3.01
365 366 0.334335 TGGCAATGGGCACTGGAATA 59.666 50.000 0.00 0.00 45.76 1.75
366 367 1.272928 TGGCAATGGGCACTGGAATAA 60.273 47.619 0.00 0.00 45.76 1.40
367 368 2.824687 TGGCAATGGGCACTGGAATAAA 60.825 45.455 0.00 0.00 45.76 1.40
368 369 3.825143 GCAATGGGCACTGGAATAAAT 57.175 42.857 0.00 0.00 43.97 1.40
369 370 3.721035 GCAATGGGCACTGGAATAAATC 58.279 45.455 0.00 0.00 43.97 2.17
370 371 3.132646 GCAATGGGCACTGGAATAAATCA 59.867 43.478 0.00 0.00 43.97 2.57
371 372 4.202284 GCAATGGGCACTGGAATAAATCAT 60.202 41.667 0.00 0.00 43.97 2.45
372 373 5.010922 GCAATGGGCACTGGAATAAATCATA 59.989 40.000 0.00 0.00 43.97 2.15
373 374 6.295462 GCAATGGGCACTGGAATAAATCATAT 60.295 38.462 0.00 0.00 43.97 1.78
374 375 7.093814 GCAATGGGCACTGGAATAAATCATATA 60.094 37.037 0.00 0.00 43.97 0.86
375 376 8.805175 CAATGGGCACTGGAATAAATCATATAA 58.195 33.333 0.00 0.00 0.00 0.98
376 377 8.954834 ATGGGCACTGGAATAAATCATATAAA 57.045 30.769 0.00 0.00 0.00 1.40
377 378 8.774546 TGGGCACTGGAATAAATCATATAAAA 57.225 30.769 0.00 0.00 0.00 1.52
378 379 9.378504 TGGGCACTGGAATAAATCATATAAAAT 57.621 29.630 0.00 0.00 0.00 1.82
400 401 9.737844 AAAATATTGCCCAAAATATGTGAAAGT 57.262 25.926 0.00 0.00 33.87 2.66
401 402 9.737844 AAATATTGCCCAAAATATGTGAAAGTT 57.262 25.926 0.00 0.00 33.87 2.66
433 434 9.953697 ATCAAAAACTATAGATACGACAGAGAC 57.046 33.333 6.78 0.00 0.00 3.36
434 435 8.121086 TCAAAAACTATAGATACGACAGAGACG 58.879 37.037 6.78 0.00 0.00 4.18
435 436 7.551035 AAAACTATAGATACGACAGAGACGT 57.449 36.000 6.78 0.00 45.75 4.34
443 444 1.003759 ACGACAGAGACGTATCATCGC 60.004 52.381 26.68 8.83 42.17 4.58
444 445 1.664629 GACAGAGACGTATCATCGCG 58.335 55.000 13.45 0.00 0.00 5.87
445 446 0.317103 ACAGAGACGTATCATCGCGC 60.317 55.000 13.45 0.00 0.00 6.86
446 447 0.999228 CAGAGACGTATCATCGCGCC 60.999 60.000 13.45 0.00 0.00 6.53
447 448 1.008881 GAGACGTATCATCGCGCCA 60.009 57.895 5.07 0.00 0.00 5.69
448 449 0.387367 GAGACGTATCATCGCGCCAT 60.387 55.000 5.07 0.00 0.00 4.40
449 450 0.387367 AGACGTATCATCGCGCCATC 60.387 55.000 0.00 0.00 0.00 3.51
450 451 0.663269 GACGTATCATCGCGCCATCA 60.663 55.000 0.00 0.00 0.00 3.07
451 452 0.939577 ACGTATCATCGCGCCATCAC 60.940 55.000 0.00 0.00 0.00 3.06
452 453 0.664466 CGTATCATCGCGCCATCACT 60.664 55.000 0.00 0.00 0.00 3.41
453 454 0.786581 GTATCATCGCGCCATCACTG 59.213 55.000 0.00 0.00 0.00 3.66
454 455 0.673437 TATCATCGCGCCATCACTGA 59.327 50.000 0.00 0.00 0.00 3.41
455 456 0.599466 ATCATCGCGCCATCACTGAG 60.599 55.000 0.00 0.00 0.00 3.35
456 457 2.107750 ATCGCGCCATCACTGAGG 59.892 61.111 0.00 0.00 0.00 3.86
461 462 3.595819 GCCATCACTGAGGCCAAC 58.404 61.111 5.01 0.00 45.18 3.77
462 463 1.303561 GCCATCACTGAGGCCAACA 60.304 57.895 5.01 3.66 45.18 3.33
463 464 0.895100 GCCATCACTGAGGCCAACAA 60.895 55.000 5.01 0.00 45.18 2.83
464 465 0.883833 CCATCACTGAGGCCAACAAC 59.116 55.000 5.01 0.00 0.00 3.32
465 466 0.518636 CATCACTGAGGCCAACAACG 59.481 55.000 5.01 0.00 0.00 4.10
466 467 1.237285 ATCACTGAGGCCAACAACGC 61.237 55.000 5.01 0.00 0.00 4.84
472 473 3.977244 GGCCAACAACGCCACCTG 61.977 66.667 0.00 0.00 46.27 4.00
473 474 4.645921 GCCAACAACGCCACCTGC 62.646 66.667 0.00 0.00 0.00 4.85
474 475 3.215568 CCAACAACGCCACCTGCA 61.216 61.111 0.00 0.00 41.33 4.41
475 476 2.026014 CAACAACGCCACCTGCAC 59.974 61.111 0.00 0.00 41.33 4.57
476 477 2.439338 AACAACGCCACCTGCACA 60.439 55.556 0.00 0.00 41.33 4.57
477 478 2.480610 AACAACGCCACCTGCACAG 61.481 57.895 0.00 0.00 41.33 3.66
478 479 2.591429 CAACGCCACCTGCACAGA 60.591 61.111 0.00 0.00 41.33 3.41
492 493 0.396417 CACAGATCCGGAGAGGGAGT 60.396 60.000 11.34 0.00 40.02 3.85
501 502 1.255667 GGAGAGGGAGTAACACGCCA 61.256 60.000 1.50 0.00 40.05 5.69
506 507 1.078426 GGAGTAACACGCCAGGCAT 60.078 57.895 13.30 0.00 38.02 4.40
515 516 0.676782 ACGCCAGGCATAACCAGAAC 60.677 55.000 13.30 0.00 43.14 3.01
526 527 4.326826 CATAACCAGAACACATGACCACT 58.673 43.478 0.00 0.00 0.00 4.00
560 561 1.181098 GCACACAATCCAGGTTGCCT 61.181 55.000 0.00 0.00 32.32 4.75
599 601 1.866496 CGCCGACGTAACTTCCTCG 60.866 63.158 0.00 0.00 33.53 4.63
630 632 3.559238 ACCACAACGAGATTCAAATGC 57.441 42.857 0.00 0.00 0.00 3.56
684 1331 5.048364 ACAACAAACTACACTCACAAGCAAA 60.048 36.000 0.00 0.00 0.00 3.68
790 1438 0.898789 TCCGAGGAGGTCACAAGGAC 60.899 60.000 0.00 0.00 46.20 3.85
795 1443 0.606673 GGAGGTCACAAGGACTTGGC 60.607 60.000 15.72 6.12 46.16 4.52
952 1604 2.870372 CGGAAGCGCAAAGGAAGG 59.130 61.111 11.47 0.00 0.00 3.46
953 1605 1.671054 CGGAAGCGCAAAGGAAGGA 60.671 57.895 11.47 0.00 0.00 3.36
1142 1794 3.284449 GGTGGCGCAAAACTCCGT 61.284 61.111 10.83 0.00 0.00 4.69
1193 1845 4.267503 GATCCTCGGCCGACGGAC 62.268 72.222 34.12 26.08 44.45 4.79
1234 1886 3.181493 CCGTCGTTGGTTATACTGCTAGT 60.181 47.826 0.00 0.00 0.00 2.57
1238 1894 5.287992 GTCGTTGGTTATACTGCTAGTGTTC 59.712 44.000 0.00 0.00 0.00 3.18
1254 1910 2.033550 GTGTTCAGATCTAGGTCGCGAT 59.966 50.000 14.06 0.00 0.00 4.58
1298 1954 1.743394 CCGTTTAGATTTGGGACAGCC 59.257 52.381 0.00 0.00 42.39 4.85
1306 1962 0.889186 TTTGGGACAGCCGAGCTTTC 60.889 55.000 0.00 4.14 42.39 2.62
1329 1985 3.797796 CAGAATCATGACAGAGCTCGAAG 59.202 47.826 8.37 5.19 0.00 3.79
1331 1987 3.883830 ATCATGACAGAGCTCGAAGTT 57.116 42.857 8.37 0.00 0.00 2.66
1339 1995 3.190744 ACAGAGCTCGAAGTTTACGATGA 59.809 43.478 8.37 0.00 39.02 2.92
1469 2128 1.608025 CCAGTGGATGTACGTGCACTT 60.608 52.381 32.33 18.71 46.79 3.16
1475 2134 1.204941 GATGTACGTGCACTTCCTCCT 59.795 52.381 16.19 0.00 0.00 3.69
1493 2186 4.322349 CCTCCTTCTGGAAGTAACACTCAG 60.322 50.000 9.15 0.00 42.66 3.35
1664 2359 3.623510 GGTGGCTGCTTCTGATTTAGTAC 59.376 47.826 0.00 0.00 0.00 2.73
1718 2415 5.944007 ACTAATAATTCGGGCATGTTATCCC 59.056 40.000 0.00 0.00 39.17 3.85
1730 2427 4.382901 GCATGTTATCCCCAGAAAATTGCA 60.383 41.667 0.00 0.00 0.00 4.08
1900 2597 4.347000 CCCATTCCGAGGAGAATAGGTAAA 59.653 45.833 0.00 0.00 34.69 2.01
1942 2639 6.879458 GGAGCTCCTTGTTAACTAATCTTGAA 59.121 38.462 26.25 0.00 0.00 2.69
1961 2658 4.013728 TGAATTTTTATCTGGGGTCGTGG 58.986 43.478 0.00 0.00 0.00 4.94
2020 2717 6.292150 AGCTTAGAAACTCAGCTGTAGTTTT 58.708 36.000 28.85 23.04 44.94 2.43
2054 2751 4.035017 CGCGATTGACAAATTATGGAACC 58.965 43.478 0.00 0.00 0.00 3.62
2055 2752 4.438065 CGCGATTGACAAATTATGGAACCA 60.438 41.667 0.00 0.00 0.00 3.67
2060 2757 5.975693 TGACAAATTATGGAACCAGAACC 57.024 39.130 2.98 0.00 29.57 3.62
2061 2758 4.457603 TGACAAATTATGGAACCAGAACCG 59.542 41.667 2.98 0.00 29.57 4.44
2077 2774 3.615496 AGAACCGACGAAATGGATTTACG 59.385 43.478 0.00 0.00 0.00 3.18
2087 2784 5.163703 CGAAATGGATTTACGGGAAATGTGA 60.164 40.000 2.18 0.00 37.90 3.58
2104 2801 2.694628 TGTGACCACGTACCTTTACAGT 59.305 45.455 0.00 0.00 0.00 3.55
2131 2828 5.163426 TGCATGATGAGTTGTTTTCCTTGTT 60.163 36.000 0.00 0.00 0.00 2.83
2142 2839 8.637986 AGTTGTTTTCCTTGTTAAATAGCATGA 58.362 29.630 0.00 0.00 0.00 3.07
2224 2921 6.237901 ACATCCTCAGTAACATGCTTTTGTA 58.762 36.000 0.00 0.00 0.00 2.41
2230 2927 7.067532 TCAGTAACATGCTTTTGTAATACGG 57.932 36.000 0.00 0.00 0.00 4.02
2258 2955 3.093057 AGTACGGCTGAAAGAGAGATGT 58.907 45.455 0.00 0.00 34.07 3.06
2345 3042 7.095607 GCATTAGTGCGCAGTAGAAATACTAAT 60.096 37.037 23.14 18.36 42.28 1.73
2369 3066 6.415206 AAAGGCTGCATGATGCTTAATATT 57.585 33.333 19.19 4.29 45.31 1.28
2431 3128 3.300388 TCACTAGTCAGACATGGGATCC 58.700 50.000 1.92 1.92 0.00 3.36
2460 3157 4.202060 TGCATAGACTCTTGATTCTCGACC 60.202 45.833 0.00 0.00 0.00 4.79
2473 3170 0.456312 CTCGACCGTGTAAGCACCTC 60.456 60.000 0.00 0.00 42.39 3.85
2493 3190 1.325640 CTGAATTCGATGCAGTGACGG 59.674 52.381 0.04 0.00 0.00 4.79
2509 3206 1.461127 GACGGCACTTGTTAGCTTGAG 59.539 52.381 0.00 0.00 0.00 3.02
2517 3214 5.049129 GCACTTGTTAGCTTGAGTTGAAGAT 60.049 40.000 0.00 0.00 0.00 2.40
2542 3239 4.489810 CAGTCTCGTTTCTGAGCTATGTT 58.510 43.478 0.00 0.00 35.90 2.71
2543 3240 5.641709 CAGTCTCGTTTCTGAGCTATGTTA 58.358 41.667 0.00 0.00 35.90 2.41
2571 3268 9.143155 ACCTTTGAAAATGAGTACCTTACATTT 57.857 29.630 0.00 0.00 43.14 2.32
2700 3398 8.576442 ACCTATTTTCTGTTGATGTTTTTCGAT 58.424 29.630 0.00 0.00 0.00 3.59
2737 3435 6.603940 ATGGTGTTATTTAGGCATGTTTGT 57.396 33.333 0.00 0.00 0.00 2.83
2741 3439 6.349777 GGTGTTATTTAGGCATGTTTGTAGCA 60.350 38.462 0.00 0.00 0.00 3.49
2753 3451 5.973899 TGTTTGTAGCAGCAAATAATCCA 57.026 34.783 8.55 0.80 40.01 3.41
2785 3483 5.705441 TCGTTTATTTGGCACATTCTCTCTT 59.295 36.000 0.00 0.00 39.30 2.85
2794 3492 4.321527 GGCACATTCTCTCTTTTCCTTTGG 60.322 45.833 0.00 0.00 0.00 3.28
2801 3499 4.044065 TCTCTCTTTTCCTTTGGGGCATTA 59.956 41.667 0.00 0.00 34.39 1.90
2807 3505 3.969466 TCCTTTGGGGCATTATGATGA 57.031 42.857 0.85 0.00 35.16 2.92
2878 3768 4.538490 TCACCTTACCTCCCAATTATGTGT 59.462 41.667 0.00 0.00 0.00 3.72
2879 3769 4.640201 CACCTTACCTCCCAATTATGTGTG 59.360 45.833 0.00 0.00 0.00 3.82
2880 3770 4.207165 CCTTACCTCCCAATTATGTGTGG 58.793 47.826 0.00 0.00 34.44 4.17
2881 3771 4.325030 CCTTACCTCCCAATTATGTGTGGT 60.325 45.833 0.00 0.00 32.60 4.16
2886 3776 4.283212 CCTCCCAATTATGTGTGGTGTTTT 59.717 41.667 0.00 0.00 32.60 2.43
2923 3813 8.437360 AAACATTTCCTTTGAATTTTCCTGAC 57.563 30.769 0.00 0.00 0.00 3.51
2925 3815 6.986231 ACATTTCCTTTGAATTTTCCTGACAC 59.014 34.615 0.00 0.00 0.00 3.67
2956 3846 8.268850 TCCTATTTAATGCTTTGTGAAGACTC 57.731 34.615 0.00 0.00 34.71 3.36
2957 3847 7.336931 TCCTATTTAATGCTTTGTGAAGACTCC 59.663 37.037 0.00 0.00 34.71 3.85
2958 3848 5.356882 TTTAATGCTTTGTGAAGACTCCG 57.643 39.130 0.00 0.00 34.71 4.63
2960 3850 3.678056 ATGCTTTGTGAAGACTCCGTA 57.322 42.857 0.00 0.00 34.71 4.02
2978 3868 2.409715 CGTAGTCACAGTTGCACTCATG 59.590 50.000 0.00 0.00 0.00 3.07
3038 3928 3.305608 GCTGAATTTGCCATAGTATGCCC 60.306 47.826 4.47 0.00 0.00 5.36
3077 3967 4.465660 TCCCAATTATGTGGATGGTTTGTG 59.534 41.667 0.00 0.00 41.65 3.33
3155 4047 1.347707 TGTGAAGACTCCATGGTCACC 59.652 52.381 22.80 10.59 38.23 4.02
3462 4357 4.761739 AGTTATTCTTGTGTCACCCATGTG 59.238 41.667 0.00 0.00 44.18 3.21
3464 4359 3.847671 TTCTTGTGTCACCCATGTGTA 57.152 42.857 0.00 0.00 43.26 2.90
3466 4361 3.738982 TCTTGTGTCACCCATGTGTAAG 58.261 45.455 0.00 0.00 43.26 2.34
3467 4362 3.389656 TCTTGTGTCACCCATGTGTAAGA 59.610 43.478 0.00 0.00 43.26 2.10
3511 4408 6.747280 GCCATAACTTGTTTATGCTGTAACTG 59.253 38.462 0.00 0.00 44.13 3.16
3517 4414 8.848474 ACTTGTTTATGCTGTAACTGTAGAAT 57.152 30.769 0.00 0.00 0.00 2.40
3554 4451 6.534634 ACACCTGTCCTATATATTTTGAGGC 58.465 40.000 0.00 0.00 0.00 4.70
3667 4565 2.033832 CACATTGGAGCGTTTGCAAAAC 60.034 45.455 14.67 9.40 46.23 2.43
3677 4575 3.612423 GCGTTTGCAAAACTTATCATCCC 59.388 43.478 14.67 0.00 42.15 3.85
3678 4576 3.851403 CGTTTGCAAAACTTATCATCCCG 59.149 43.478 14.67 4.75 0.00 5.14
3679 4577 4.378978 CGTTTGCAAAACTTATCATCCCGA 60.379 41.667 14.67 0.00 0.00 5.14
3680 4578 4.963276 TTGCAAAACTTATCATCCCGAG 57.037 40.909 0.00 0.00 0.00 4.63
3681 4579 3.950397 TGCAAAACTTATCATCCCGAGT 58.050 40.909 0.00 0.00 0.00 4.18
3682 4580 3.689161 TGCAAAACTTATCATCCCGAGTG 59.311 43.478 0.00 0.00 0.00 3.51
3683 4581 3.487544 GCAAAACTTATCATCCCGAGTGC 60.488 47.826 0.00 0.00 0.00 4.40
3745 4727 5.883503 TTTCGGTAACTGTTCTGTTTGTT 57.116 34.783 0.00 0.00 0.00 2.83
3746 4728 5.883503 TTCGGTAACTGTTCTGTTTGTTT 57.116 34.783 0.00 0.00 0.00 2.83
3747 4729 5.224562 TCGGTAACTGTTCTGTTTGTTTG 57.775 39.130 0.00 0.00 0.00 2.93
3751 4733 5.798434 GGTAACTGTTCTGTTTGTTTGTGAC 59.202 40.000 0.00 0.00 0.00 3.67
3752 4734 5.705609 AACTGTTCTGTTTGTTTGTGACT 57.294 34.783 0.00 0.00 0.00 3.41
3753 4735 5.046910 ACTGTTCTGTTTGTTTGTGACTG 57.953 39.130 0.00 0.00 0.00 3.51
3754 4736 4.759693 ACTGTTCTGTTTGTTTGTGACTGA 59.240 37.500 0.00 0.00 0.00 3.41
3755 4737 5.240623 ACTGTTCTGTTTGTTTGTGACTGAA 59.759 36.000 0.00 0.00 0.00 3.02
3756 4738 6.078202 TGTTCTGTTTGTTTGTGACTGAAA 57.922 33.333 0.00 0.00 34.51 2.69
3757 4739 6.507900 TGTTCTGTTTGTTTGTGACTGAAAA 58.492 32.000 0.00 0.00 34.51 2.29
3761 4743 6.090628 TCTGTTTGTTTGTGACTGAAAATTGC 59.909 34.615 0.00 0.00 0.00 3.56
3765 4747 8.386606 GTTTGTTTGTGACTGAAAATTGCATTA 58.613 29.630 0.00 0.00 0.00 1.90
3835 4817 3.576550 TGTCCTTTCTATTTTTGGTGGCC 59.423 43.478 0.00 0.00 0.00 5.36
3953 4941 5.585500 TCGTTCTTTCTATTTGTGGTTCG 57.415 39.130 0.00 0.00 0.00 3.95
3964 4952 9.825109 TTCTATTTGTGGTTCGAATGACATATA 57.175 29.630 0.00 10.75 32.85 0.86
3970 4958 9.996554 TTGTGGTTCGAATGACATATAGATTAT 57.003 29.630 0.00 0.00 0.00 1.28
4035 5023 1.317613 TGATCAAACGCAACAAGCCT 58.682 45.000 0.00 0.00 41.38 4.58
4043 5031 1.408702 ACGCAACAAGCCTCAAATGTT 59.591 42.857 0.00 0.00 41.38 2.71
4126 5114 3.198635 GGTCATGAATCCTTCCAGTCTCA 59.801 47.826 0.00 0.00 0.00 3.27
4134 5122 2.158310 TCCTTCCAGTCTCACCAGAAGA 60.158 50.000 0.00 0.00 36.83 2.87
4137 5125 2.520069 TCCAGTCTCACCAGAAGACTC 58.480 52.381 2.90 0.00 40.50 3.36
4319 5316 2.517980 ACCCCAGCTCTCTATCTCTCTT 59.482 50.000 0.00 0.00 0.00 2.85
4330 5336 2.202295 ATCTCTCTTTTCTCTCGCGC 57.798 50.000 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.964209 ACAGAAGAGAACAGGGAGACA 58.036 47.619 0.00 0.00 0.00 3.41
2 3 4.202264 TGAAACAGAAGAGAACAGGGAGAC 60.202 45.833 0.00 0.00 0.00 3.36
3 4 3.967326 TGAAACAGAAGAGAACAGGGAGA 59.033 43.478 0.00 0.00 0.00 3.71
5 6 3.492656 CGTGAAACAGAAGAGAACAGGGA 60.493 47.826 0.00 0.00 35.74 4.20
6 7 2.802816 CGTGAAACAGAAGAGAACAGGG 59.197 50.000 0.00 0.00 35.74 4.45
8 9 3.126831 AGCGTGAAACAGAAGAGAACAG 58.873 45.455 0.00 0.00 35.74 3.16
9 10 3.123804 GAGCGTGAAACAGAAGAGAACA 58.876 45.455 0.00 0.00 35.74 3.18
10 11 2.476997 GGAGCGTGAAACAGAAGAGAAC 59.523 50.000 0.00 0.00 35.74 3.01
11 12 2.365617 AGGAGCGTGAAACAGAAGAGAA 59.634 45.455 0.00 0.00 35.74 2.87
12 13 1.964223 AGGAGCGTGAAACAGAAGAGA 59.036 47.619 0.00 0.00 35.74 3.10
13 14 2.064762 CAGGAGCGTGAAACAGAAGAG 58.935 52.381 0.00 0.00 35.74 2.85
15 16 1.871080 ACAGGAGCGTGAAACAGAAG 58.129 50.000 0.00 0.00 35.74 2.85
16 17 2.325583 AACAGGAGCGTGAAACAGAA 57.674 45.000 0.00 0.00 35.74 3.02
17 18 2.325583 AAACAGGAGCGTGAAACAGA 57.674 45.000 0.00 0.00 35.74 3.41
19 20 2.354510 CAGAAAACAGGAGCGTGAAACA 59.645 45.455 0.00 0.00 35.74 2.83
20 21 2.287009 CCAGAAAACAGGAGCGTGAAAC 60.287 50.000 0.00 0.00 0.00 2.78
21 22 1.946768 CCAGAAAACAGGAGCGTGAAA 59.053 47.619 0.00 0.00 0.00 2.69
22 23 1.593196 CCAGAAAACAGGAGCGTGAA 58.407 50.000 0.00 0.00 0.00 3.18
23 24 0.884704 GCCAGAAAACAGGAGCGTGA 60.885 55.000 0.00 0.00 0.00 4.35
24 25 1.576421 GCCAGAAAACAGGAGCGTG 59.424 57.895 0.00 0.00 0.00 5.34
25 26 1.600916 GGCCAGAAAACAGGAGCGT 60.601 57.895 0.00 0.00 0.00 5.07
26 27 2.680913 CGGCCAGAAAACAGGAGCG 61.681 63.158 2.24 0.00 0.00 5.03
27 28 0.889186 TTCGGCCAGAAAACAGGAGC 60.889 55.000 2.24 0.00 35.61 4.70
28 29 1.604604 TTTCGGCCAGAAAACAGGAG 58.395 50.000 16.86 0.00 45.05 3.69
29 30 3.811031 TTTCGGCCAGAAAACAGGA 57.189 47.368 16.86 0.00 45.05 3.86
35 36 1.065851 GAAACGGTTTTCGGCCAGAAA 59.934 47.619 15.70 15.70 46.22 2.52
36 37 0.664224 GAAACGGTTTTCGGCCAGAA 59.336 50.000 7.65 4.57 44.45 3.02
37 38 0.179040 AGAAACGGTTTTCGGCCAGA 60.179 50.000 7.65 0.00 45.15 3.86
38 39 0.666374 AAGAAACGGTTTTCGGCCAG 59.334 50.000 7.65 0.00 45.15 4.85
39 40 1.964552 TAAGAAACGGTTTTCGGCCA 58.035 45.000 7.65 0.00 45.15 5.36
40 41 4.888038 ATATAAGAAACGGTTTTCGGCC 57.112 40.909 7.65 0.00 45.15 6.13
41 42 5.740569 GGAAATATAAGAAACGGTTTTCGGC 59.259 40.000 7.65 0.00 45.15 5.54
42 43 5.961263 CGGAAATATAAGAAACGGTTTTCGG 59.039 40.000 7.65 0.07 45.15 4.30
43 44 5.961263 CCGGAAATATAAGAAACGGTTTTCG 59.039 40.000 7.65 0.00 45.15 3.46
44 45 7.064966 TCTCCGGAAATATAAGAAACGGTTTTC 59.935 37.037 5.23 1.74 41.44 2.29
45 46 6.880529 TCTCCGGAAATATAAGAAACGGTTTT 59.119 34.615 5.23 0.00 40.60 2.43
46 47 6.408869 TCTCCGGAAATATAAGAAACGGTTT 58.591 36.000 5.23 5.68 40.60 3.27
47 48 5.981174 TCTCCGGAAATATAAGAAACGGTT 58.019 37.500 5.23 0.00 40.60 4.44
48 49 5.603170 TCTCCGGAAATATAAGAAACGGT 57.397 39.130 5.23 0.00 40.60 4.83
49 50 5.638234 GGATCTCCGGAAATATAAGAAACGG 59.362 44.000 5.23 0.00 41.06 4.44
50 51 6.707599 GGATCTCCGGAAATATAAGAAACG 57.292 41.667 5.23 0.00 0.00 3.60
66 67 2.862921 GCAATCGGAGTTACGGATCTCC 60.863 54.545 14.03 14.03 44.65 3.71
67 68 2.395654 GCAATCGGAGTTACGGATCTC 58.604 52.381 0.00 0.00 37.53 2.75
68 69 1.269102 CGCAATCGGAGTTACGGATCT 60.269 52.381 0.00 0.00 37.53 2.75
69 70 1.129326 CGCAATCGGAGTTACGGATC 58.871 55.000 0.00 0.00 37.53 3.36
70 71 0.874607 GCGCAATCGGAGTTACGGAT 60.875 55.000 0.30 0.00 39.63 4.18
71 72 1.517694 GCGCAATCGGAGTTACGGA 60.518 57.895 0.30 0.00 35.95 4.69
72 73 1.518572 AGCGCAATCGGAGTTACGG 60.519 57.895 11.47 0.00 35.95 4.02
73 74 0.800683 TCAGCGCAATCGGAGTTACG 60.801 55.000 11.47 0.00 35.95 3.18
74 75 0.924090 CTCAGCGCAATCGGAGTTAC 59.076 55.000 11.47 0.00 35.95 2.50
75 76 0.815095 TCTCAGCGCAATCGGAGTTA 59.185 50.000 11.47 0.00 35.95 2.24
76 77 0.176680 ATCTCAGCGCAATCGGAGTT 59.823 50.000 11.47 0.66 35.95 3.01
77 78 0.176680 AATCTCAGCGCAATCGGAGT 59.823 50.000 11.47 0.00 35.95 3.85
78 79 1.293924 AAATCTCAGCGCAATCGGAG 58.706 50.000 11.47 8.41 35.95 4.63
79 80 1.737838 AAAATCTCAGCGCAATCGGA 58.262 45.000 11.47 0.09 35.95 4.55
80 81 3.181511 TGTTAAAATCTCAGCGCAATCGG 60.182 43.478 11.47 0.00 35.95 4.18
81 82 3.780801 GTGTTAAAATCTCAGCGCAATCG 59.219 43.478 11.47 0.00 39.07 3.34
82 83 3.780801 CGTGTTAAAATCTCAGCGCAATC 59.219 43.478 11.47 0.00 0.00 2.67
83 84 3.435327 TCGTGTTAAAATCTCAGCGCAAT 59.565 39.130 11.47 0.00 0.00 3.56
84 85 2.803386 TCGTGTTAAAATCTCAGCGCAA 59.197 40.909 11.47 0.00 0.00 4.85
85 86 2.409012 TCGTGTTAAAATCTCAGCGCA 58.591 42.857 11.47 0.00 0.00 6.09
86 87 3.658351 ATCGTGTTAAAATCTCAGCGC 57.342 42.857 0.00 0.00 0.00 5.92
87 88 6.911484 AAAAATCGTGTTAAAATCTCAGCG 57.089 33.333 0.00 0.00 0.00 5.18
107 108 5.067283 GCAAGGAAGCTTATATCCGGAAAAA 59.933 40.000 9.01 1.88 40.78 1.94
108 109 4.578928 GCAAGGAAGCTTATATCCGGAAAA 59.421 41.667 9.01 0.00 40.78 2.29
109 110 4.134563 GCAAGGAAGCTTATATCCGGAAA 58.865 43.478 9.01 0.00 40.78 3.13
110 111 3.740115 GCAAGGAAGCTTATATCCGGAA 58.260 45.455 9.01 0.00 40.78 4.30
111 112 2.288825 CGCAAGGAAGCTTATATCCGGA 60.289 50.000 6.61 6.61 40.78 5.14
112 113 2.069273 CGCAAGGAAGCTTATATCCGG 58.931 52.381 0.00 0.00 40.78 5.14
113 114 1.461127 GCGCAAGGAAGCTTATATCCG 59.539 52.381 0.30 1.24 40.78 4.18
114 115 2.739379 GAGCGCAAGGAAGCTTATATCC 59.261 50.000 11.47 0.00 44.69 2.59
115 116 2.410053 CGAGCGCAAGGAAGCTTATATC 59.590 50.000 11.47 0.00 44.69 1.63
116 117 2.035961 TCGAGCGCAAGGAAGCTTATAT 59.964 45.455 11.47 0.00 44.69 0.86
117 118 1.407618 TCGAGCGCAAGGAAGCTTATA 59.592 47.619 11.47 0.00 44.69 0.98
118 119 0.175760 TCGAGCGCAAGGAAGCTTAT 59.824 50.000 11.47 0.00 44.69 1.73
119 120 0.037697 TTCGAGCGCAAGGAAGCTTA 60.038 50.000 11.47 0.00 44.69 3.09
120 121 1.294659 CTTCGAGCGCAAGGAAGCTT 61.295 55.000 11.47 0.00 44.69 3.74
122 123 0.736325 TACTTCGAGCGCAAGGAAGC 60.736 55.000 25.32 1.93 40.57 3.86
123 124 1.135373 TCTACTTCGAGCGCAAGGAAG 60.135 52.381 24.37 24.37 42.16 3.46
124 125 0.885879 TCTACTTCGAGCGCAAGGAA 59.114 50.000 11.47 8.93 38.28 3.36
125 126 0.452184 CTCTACTTCGAGCGCAAGGA 59.548 55.000 11.47 0.00 38.28 3.36
126 127 0.452184 TCTCTACTTCGAGCGCAAGG 59.548 55.000 11.47 0.00 38.28 3.61
127 128 2.380660 GATCTCTACTTCGAGCGCAAG 58.619 52.381 11.47 7.37 43.44 4.01
128 129 1.065701 GGATCTCTACTTCGAGCGCAA 59.934 52.381 11.47 0.00 0.00 4.85
129 130 0.663688 GGATCTCTACTTCGAGCGCA 59.336 55.000 11.47 0.00 0.00 6.09
130 131 0.663688 TGGATCTCTACTTCGAGCGC 59.336 55.000 0.00 0.00 0.00 5.92
131 132 2.541999 GGTTGGATCTCTACTTCGAGCG 60.542 54.545 0.00 0.00 0.00 5.03
132 133 2.541999 CGGTTGGATCTCTACTTCGAGC 60.542 54.545 0.00 0.00 0.00 5.03
133 134 2.943690 TCGGTTGGATCTCTACTTCGAG 59.056 50.000 0.00 0.00 0.00 4.04
134 135 2.681848 GTCGGTTGGATCTCTACTTCGA 59.318 50.000 0.00 0.00 0.00 3.71
135 136 2.539142 CGTCGGTTGGATCTCTACTTCG 60.539 54.545 0.00 0.00 0.00 3.79
136 137 2.422832 ACGTCGGTTGGATCTCTACTTC 59.577 50.000 0.00 0.00 0.00 3.01
137 138 2.444421 ACGTCGGTTGGATCTCTACTT 58.556 47.619 0.00 0.00 0.00 2.24
138 139 2.125773 ACGTCGGTTGGATCTCTACT 57.874 50.000 0.00 0.00 0.00 2.57
139 140 2.286067 CGTACGTCGGTTGGATCTCTAC 60.286 54.545 7.22 0.00 35.71 2.59
140 141 1.935873 CGTACGTCGGTTGGATCTCTA 59.064 52.381 7.22 0.00 35.71 2.43
141 142 0.731417 CGTACGTCGGTTGGATCTCT 59.269 55.000 7.22 0.00 35.71 3.10
142 143 0.729116 TCGTACGTCGGTTGGATCTC 59.271 55.000 16.05 0.00 40.32 2.75
143 144 0.731417 CTCGTACGTCGGTTGGATCT 59.269 55.000 16.05 0.00 40.32 2.75
144 145 0.248377 CCTCGTACGTCGGTTGGATC 60.248 60.000 16.05 0.00 40.32 3.36
145 146 0.962356 ACCTCGTACGTCGGTTGGAT 60.962 55.000 20.75 4.14 40.32 3.41
146 147 1.600636 ACCTCGTACGTCGGTTGGA 60.601 57.895 20.75 0.00 40.32 3.53
147 148 1.443194 CACCTCGTACGTCGGTTGG 60.443 63.158 22.86 15.09 40.32 3.77
148 149 0.453950 CTCACCTCGTACGTCGGTTG 60.454 60.000 22.86 18.55 40.32 3.77
149 150 1.871772 CTCACCTCGTACGTCGGTT 59.128 57.895 22.86 10.65 40.32 4.44
150 151 2.684843 GCTCACCTCGTACGTCGGT 61.685 63.158 20.75 20.75 40.32 4.69
151 152 2.099831 GCTCACCTCGTACGTCGG 59.900 66.667 16.05 18.26 40.32 4.79
152 153 1.511464 GTGCTCACCTCGTACGTCG 60.511 63.158 16.05 8.89 41.41 5.12
153 154 0.039798 TTGTGCTCACCTCGTACGTC 60.040 55.000 16.05 0.00 0.00 4.34
154 155 0.318445 GTTGTGCTCACCTCGTACGT 60.318 55.000 16.05 0.00 0.00 3.57
155 156 1.007336 GGTTGTGCTCACCTCGTACG 61.007 60.000 9.53 9.53 0.00 3.67
156 157 0.669625 GGGTTGTGCTCACCTCGTAC 60.670 60.000 0.00 0.00 0.00 3.67
157 158 1.116536 TGGGTTGTGCTCACCTCGTA 61.117 55.000 0.00 0.00 0.00 3.43
158 159 2.383245 CTGGGTTGTGCTCACCTCGT 62.383 60.000 0.00 0.00 0.00 4.18
159 160 1.669115 CTGGGTTGTGCTCACCTCG 60.669 63.158 0.00 0.00 0.00 4.63
160 161 0.179018 AACTGGGTTGTGCTCACCTC 60.179 55.000 0.00 0.00 0.00 3.85
161 162 0.466189 CAACTGGGTTGTGCTCACCT 60.466 55.000 2.63 0.00 38.56 4.00
162 163 1.455383 CCAACTGGGTTGTGCTCACC 61.455 60.000 9.14 0.00 41.41 4.02
163 164 2.032981 CCAACTGGGTTGTGCTCAC 58.967 57.895 9.14 0.00 41.41 3.51
164 165 4.577152 CCAACTGGGTTGTGCTCA 57.423 55.556 9.14 0.00 41.41 4.26
181 182 4.643387 AAGACACCAGGGCACGCC 62.643 66.667 0.00 0.00 0.00 5.68
182 183 3.357079 CAAGACACCAGGGCACGC 61.357 66.667 0.00 0.00 0.00 5.34
183 184 2.111043 ACAAGACACCAGGGCACG 59.889 61.111 0.00 0.00 0.00 5.34
184 185 1.898574 CCACAAGACACCAGGGCAC 60.899 63.158 0.00 0.00 0.00 5.01
185 186 2.515398 CCACAAGACACCAGGGCA 59.485 61.111 0.00 0.00 0.00 5.36
186 187 2.282462 CCCACAAGACACCAGGGC 60.282 66.667 0.00 0.00 31.81 5.19
187 188 2.436109 CCCCACAAGACACCAGGG 59.564 66.667 0.00 0.00 39.29 4.45
188 189 2.436109 CCCCCACAAGACACCAGG 59.564 66.667 0.00 0.00 0.00 4.45
189 190 2.282462 GCCCCCACAAGACACCAG 60.282 66.667 0.00 0.00 0.00 4.00
190 191 2.776526 AGCCCCCACAAGACACCA 60.777 61.111 0.00 0.00 0.00 4.17
191 192 2.282462 CAGCCCCCACAAGACACC 60.282 66.667 0.00 0.00 0.00 4.16
192 193 1.898574 CACAGCCCCCACAAGACAC 60.899 63.158 0.00 0.00 0.00 3.67
193 194 2.515398 CACAGCCCCCACAAGACA 59.485 61.111 0.00 0.00 0.00 3.41
194 195 2.282462 CCACAGCCCCCACAAGAC 60.282 66.667 0.00 0.00 0.00 3.01
195 196 3.579302 CCCACAGCCCCCACAAGA 61.579 66.667 0.00 0.00 0.00 3.02
205 206 3.010413 GCAAATGGAGGCCCACAGC 62.010 63.158 0.00 0.00 46.98 4.40
206 207 2.703798 CGCAAATGGAGGCCCACAG 61.704 63.158 0.00 0.00 46.98 3.66
207 208 2.676121 CGCAAATGGAGGCCCACA 60.676 61.111 0.00 0.00 46.98 4.17
208 209 2.275380 AACGCAAATGGAGGCCCAC 61.275 57.895 0.00 0.00 46.98 4.61
210 211 1.322538 ATCAACGCAAATGGAGGCCC 61.323 55.000 0.00 0.00 0.00 5.80
211 212 0.532115 AATCAACGCAAATGGAGGCC 59.468 50.000 0.00 0.00 0.00 5.19
212 213 1.469767 GGAATCAACGCAAATGGAGGC 60.470 52.381 0.00 0.00 0.00 4.70
213 214 1.818060 TGGAATCAACGCAAATGGAGG 59.182 47.619 0.00 0.00 0.00 4.30
214 215 3.057315 ACTTGGAATCAACGCAAATGGAG 60.057 43.478 0.00 0.00 0.00 3.86
215 216 2.890311 ACTTGGAATCAACGCAAATGGA 59.110 40.909 0.00 0.00 0.00 3.41
216 217 3.057315 AGACTTGGAATCAACGCAAATGG 60.057 43.478 0.00 0.00 0.00 3.16
217 218 4.164822 AGACTTGGAATCAACGCAAATG 57.835 40.909 0.00 0.00 0.00 2.32
218 219 5.957842 TTAGACTTGGAATCAACGCAAAT 57.042 34.783 0.00 0.00 0.00 2.32
219 220 5.759506 TTTAGACTTGGAATCAACGCAAA 57.240 34.783 0.00 0.00 0.00 3.68
220 221 5.759506 TTTTAGACTTGGAATCAACGCAA 57.240 34.783 0.00 0.00 0.00 4.85
221 222 5.759506 TTTTTAGACTTGGAATCAACGCA 57.240 34.783 0.00 0.00 0.00 5.24
265 266 8.930760 CCAAATGCAATAAAATTTTACGAGGAA 58.069 29.630 12.74 0.00 0.00 3.36
266 267 8.307483 TCCAAATGCAATAAAATTTTACGAGGA 58.693 29.630 12.74 7.58 0.00 3.71
267 268 8.379902 GTCCAAATGCAATAAAATTTTACGAGG 58.620 33.333 12.74 7.07 0.00 4.63
268 269 9.139174 AGTCCAAATGCAATAAAATTTTACGAG 57.861 29.630 12.74 7.16 0.00 4.18
269 270 9.482627 AAGTCCAAATGCAATAAAATTTTACGA 57.517 25.926 12.74 0.00 0.00 3.43
270 271 9.739786 GAAGTCCAAATGCAATAAAATTTTACG 57.260 29.630 12.74 8.49 0.00 3.18
271 272 9.739786 CGAAGTCCAAATGCAATAAAATTTTAC 57.260 29.630 12.74 1.89 0.00 2.01
272 273 9.482627 ACGAAGTCCAAATGCAATAAAATTTTA 57.517 25.926 12.85 12.85 29.74 1.52
273 274 8.376889 ACGAAGTCCAAATGCAATAAAATTTT 57.623 26.923 8.75 8.75 29.74 1.82
274 275 7.961325 ACGAAGTCCAAATGCAATAAAATTT 57.039 28.000 0.00 0.00 29.74 1.82
275 276 7.961325 AACGAAGTCCAAATGCAATAAAATT 57.039 28.000 0.00 0.00 45.00 1.82
276 277 7.655328 TCAAACGAAGTCCAAATGCAATAAAAT 59.345 29.630 0.00 0.00 45.00 1.82
277 278 6.980978 TCAAACGAAGTCCAAATGCAATAAAA 59.019 30.769 0.00 0.00 45.00 1.52
278 279 6.507900 TCAAACGAAGTCCAAATGCAATAAA 58.492 32.000 0.00 0.00 45.00 1.40
279 280 6.078202 TCAAACGAAGTCCAAATGCAATAA 57.922 33.333 0.00 0.00 45.00 1.40
280 281 5.697473 TCAAACGAAGTCCAAATGCAATA 57.303 34.783 0.00 0.00 45.00 1.90
281 282 4.582701 TCAAACGAAGTCCAAATGCAAT 57.417 36.364 0.00 0.00 45.00 3.56
282 283 4.582701 ATCAAACGAAGTCCAAATGCAA 57.417 36.364 0.00 0.00 45.00 4.08
283 284 5.392919 CCATATCAAACGAAGTCCAAATGCA 60.393 40.000 0.00 0.00 45.00 3.96
284 285 5.036737 CCATATCAAACGAAGTCCAAATGC 58.963 41.667 0.00 0.00 45.00 3.56
285 286 6.435430 TCCATATCAAACGAAGTCCAAATG 57.565 37.500 0.00 0.00 45.00 2.32
286 287 8.924511 ATATCCATATCAAACGAAGTCCAAAT 57.075 30.769 0.00 0.00 45.00 2.32
287 288 8.746052 AATATCCATATCAAACGAAGTCCAAA 57.254 30.769 0.00 0.00 45.00 3.28
288 289 7.444183 GGAATATCCATATCAAACGAAGTCCAA 59.556 37.037 0.00 0.00 36.43 3.53
289 290 6.934645 GGAATATCCATATCAAACGAAGTCCA 59.065 38.462 0.00 0.00 36.43 4.02
290 291 6.090898 CGGAATATCCATATCAAACGAAGTCC 59.909 42.308 0.00 0.00 36.20 3.85
291 292 6.401153 GCGGAATATCCATATCAAACGAAGTC 60.401 42.308 0.00 0.00 36.20 3.01
292 293 5.408604 GCGGAATATCCATATCAAACGAAGT 59.591 40.000 0.00 0.00 38.81 3.01
293 294 5.444613 CGCGGAATATCCATATCAAACGAAG 60.445 44.000 0.00 0.00 35.91 3.79
294 295 4.387559 CGCGGAATATCCATATCAAACGAA 59.612 41.667 0.00 0.00 35.91 3.85
295 296 3.924073 CGCGGAATATCCATATCAAACGA 59.076 43.478 0.00 0.00 35.91 3.85
296 297 3.924073 TCGCGGAATATCCATATCAAACG 59.076 43.478 6.13 0.00 35.91 3.60
297 298 5.856126 TTCGCGGAATATCCATATCAAAC 57.144 39.130 6.13 0.00 35.91 2.93
298 299 5.760743 TGTTTCGCGGAATATCCATATCAAA 59.239 36.000 1.59 0.00 35.91 2.69
299 300 5.301555 TGTTTCGCGGAATATCCATATCAA 58.698 37.500 1.59 0.00 35.91 2.57
300 301 4.888917 TGTTTCGCGGAATATCCATATCA 58.111 39.130 1.59 0.00 35.91 2.15
301 302 5.856126 TTGTTTCGCGGAATATCCATATC 57.144 39.130 1.59 0.00 35.91 1.63
302 303 6.627395 TTTTGTTTCGCGGAATATCCATAT 57.373 33.333 1.59 0.00 35.91 1.78
303 304 6.438259 TTTTTGTTTCGCGGAATATCCATA 57.562 33.333 1.59 0.00 35.91 2.74
304 305 4.974368 TTTTGTTTCGCGGAATATCCAT 57.026 36.364 1.59 0.00 35.91 3.41
305 306 4.768130 TTTTTGTTTCGCGGAATATCCA 57.232 36.364 1.59 0.00 35.91 3.41
334 335 2.104622 CCCATTGCCACTTCCTGTTTTT 59.895 45.455 0.00 0.00 0.00 1.94
335 336 1.693606 CCCATTGCCACTTCCTGTTTT 59.306 47.619 0.00 0.00 0.00 2.43
336 337 1.341080 CCCATTGCCACTTCCTGTTT 58.659 50.000 0.00 0.00 0.00 2.83
337 338 1.187567 GCCCATTGCCACTTCCTGTT 61.188 55.000 0.00 0.00 0.00 3.16
338 339 1.607467 GCCCATTGCCACTTCCTGT 60.607 57.895 0.00 0.00 0.00 4.00
339 340 1.607178 TGCCCATTGCCACTTCCTG 60.607 57.895 0.00 0.00 40.16 3.86
340 341 1.607467 GTGCCCATTGCCACTTCCT 60.607 57.895 0.00 0.00 40.16 3.36
341 342 1.607467 AGTGCCCATTGCCACTTCC 60.607 57.895 3.27 0.00 40.16 3.46
342 343 1.588082 CAGTGCCCATTGCCACTTC 59.412 57.895 5.71 0.00 40.16 3.01
343 344 1.909781 CCAGTGCCCATTGCCACTT 60.910 57.895 5.71 0.00 40.16 3.16
344 345 2.283388 CCAGTGCCCATTGCCACT 60.283 61.111 3.27 3.27 40.16 4.00
345 346 1.259840 ATTCCAGTGCCCATTGCCAC 61.260 55.000 0.00 0.00 40.16 5.01
346 347 0.334335 TATTCCAGTGCCCATTGCCA 59.666 50.000 0.00 0.00 40.16 4.92
347 348 1.484038 TTATTCCAGTGCCCATTGCC 58.516 50.000 0.00 0.00 40.16 4.52
348 349 3.132646 TGATTTATTCCAGTGCCCATTGC 59.867 43.478 0.00 0.00 41.77 3.56
349 350 5.540400 ATGATTTATTCCAGTGCCCATTG 57.460 39.130 0.00 0.00 0.00 2.82
350 351 8.954834 TTATATGATTTATTCCAGTGCCCATT 57.045 30.769 0.00 0.00 0.00 3.16
351 352 8.954834 TTTATATGATTTATTCCAGTGCCCAT 57.045 30.769 0.00 0.00 0.00 4.00
352 353 8.774546 TTTTATATGATTTATTCCAGTGCCCA 57.225 30.769 0.00 0.00 0.00 5.36
374 375 9.737844 ACTTTCACATATTTTGGGCAATATTTT 57.262 25.926 0.00 0.00 28.44 1.82
375 376 9.737844 AACTTTCACATATTTTGGGCAATATTT 57.262 25.926 0.00 0.00 28.44 1.40
407 408 9.953697 GTCTCTGTCGTATCTATAGTTTTTGAT 57.046 33.333 0.00 0.00 0.00 2.57
408 409 8.121086 CGTCTCTGTCGTATCTATAGTTTTTGA 58.879 37.037 0.00 0.00 0.00 2.69
409 410 7.909121 ACGTCTCTGTCGTATCTATAGTTTTTG 59.091 37.037 0.00 0.00 39.78 2.44
410 411 7.983307 ACGTCTCTGTCGTATCTATAGTTTTT 58.017 34.615 0.00 0.00 39.78 1.94
411 412 7.551035 ACGTCTCTGTCGTATCTATAGTTTT 57.449 36.000 0.00 0.00 39.78 2.43
412 413 8.830201 ATACGTCTCTGTCGTATCTATAGTTT 57.170 34.615 0.00 0.00 46.77 2.66
422 423 2.220363 GCGATGATACGTCTCTGTCGTA 59.780 50.000 20.89 0.00 45.41 3.43
423 424 1.003759 GCGATGATACGTCTCTGTCGT 60.004 52.381 20.89 0.00 43.86 4.34
424 425 1.664629 GCGATGATACGTCTCTGTCG 58.335 55.000 18.00 18.00 35.59 4.35
425 426 1.664629 CGCGATGATACGTCTCTGTC 58.335 55.000 0.00 0.00 35.59 3.51
426 427 0.317103 GCGCGATGATACGTCTCTGT 60.317 55.000 12.10 0.00 35.59 3.41
427 428 0.999228 GGCGCGATGATACGTCTCTG 60.999 60.000 12.10 0.00 35.59 3.35
428 429 1.283181 GGCGCGATGATACGTCTCT 59.717 57.895 12.10 0.00 35.59 3.10
429 430 0.387367 ATGGCGCGATGATACGTCTC 60.387 55.000 12.10 0.00 34.36 3.36
430 431 0.387367 GATGGCGCGATGATACGTCT 60.387 55.000 12.10 0.00 34.36 4.18
431 432 0.663269 TGATGGCGCGATGATACGTC 60.663 55.000 12.10 0.88 35.59 4.34
432 433 0.939577 GTGATGGCGCGATGATACGT 60.940 55.000 12.10 0.00 35.59 3.57
433 434 0.664466 AGTGATGGCGCGATGATACG 60.664 55.000 12.10 0.00 0.00 3.06
434 435 0.786581 CAGTGATGGCGCGATGATAC 59.213 55.000 12.10 6.29 0.00 2.24
435 436 0.673437 TCAGTGATGGCGCGATGATA 59.327 50.000 12.10 0.00 0.00 2.15
436 437 0.599466 CTCAGTGATGGCGCGATGAT 60.599 55.000 12.10 0.00 0.00 2.45
437 438 1.227060 CTCAGTGATGGCGCGATGA 60.227 57.895 12.10 0.00 0.00 2.92
438 439 2.242572 CCTCAGTGATGGCGCGATG 61.243 63.158 12.10 0.00 0.00 3.84
439 440 2.107750 CCTCAGTGATGGCGCGAT 59.892 61.111 12.10 3.93 0.00 4.58
440 441 4.819761 GCCTCAGTGATGGCGCGA 62.820 66.667 12.10 0.00 39.71 5.87
445 446 0.883833 GTTGTTGGCCTCAGTGATGG 59.116 55.000 3.32 0.00 0.00 3.51
446 447 0.518636 CGTTGTTGGCCTCAGTGATG 59.481 55.000 3.32 0.00 0.00 3.07
447 448 1.237285 GCGTTGTTGGCCTCAGTGAT 61.237 55.000 3.32 0.00 0.00 3.06
448 449 1.891919 GCGTTGTTGGCCTCAGTGA 60.892 57.895 3.32 0.00 0.00 3.41
449 450 2.639286 GCGTTGTTGGCCTCAGTG 59.361 61.111 3.32 1.40 0.00 3.66
456 457 4.645921 GCAGGTGGCGTTGTTGGC 62.646 66.667 0.00 0.00 0.00 4.52
465 466 2.821366 CGGATCTGTGCAGGTGGC 60.821 66.667 0.00 0.00 45.13 5.01
466 467 2.124983 CCGGATCTGTGCAGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
467 468 1.153489 CTCCGGATCTGTGCAGGTG 60.153 63.158 3.57 0.00 0.00 4.00
468 469 1.305297 TCTCCGGATCTGTGCAGGT 60.305 57.895 3.57 0.00 0.00 4.00
469 470 1.440893 CTCTCCGGATCTGTGCAGG 59.559 63.158 3.57 0.00 0.00 4.85
470 471 1.440893 CCTCTCCGGATCTGTGCAG 59.559 63.158 3.57 0.00 33.16 4.41
471 472 2.060383 CCCTCTCCGGATCTGTGCA 61.060 63.158 3.57 0.00 33.16 4.57
472 473 1.743321 CTCCCTCTCCGGATCTGTGC 61.743 65.000 3.57 0.00 33.16 4.57
473 474 0.396417 ACTCCCTCTCCGGATCTGTG 60.396 60.000 3.57 0.00 33.16 3.66
474 475 1.223501 TACTCCCTCTCCGGATCTGT 58.776 55.000 3.57 1.23 33.16 3.41
475 476 1.957877 GTTACTCCCTCTCCGGATCTG 59.042 57.143 3.57 0.00 33.16 2.90
476 477 1.569548 TGTTACTCCCTCTCCGGATCT 59.430 52.381 3.57 0.00 33.16 2.75
477 478 1.682323 GTGTTACTCCCTCTCCGGATC 59.318 57.143 3.57 0.00 33.16 3.36
478 479 1.777941 GTGTTACTCCCTCTCCGGAT 58.222 55.000 3.57 0.00 33.16 4.18
492 493 0.325272 TGGTTATGCCTGGCGTGTTA 59.675 50.000 23.37 5.91 38.35 2.41
501 502 3.347216 GTCATGTGTTCTGGTTATGCCT 58.653 45.455 0.00 0.00 38.35 4.75
506 507 3.389656 TGAGTGGTCATGTGTTCTGGTTA 59.610 43.478 0.00 0.00 0.00 2.85
515 516 1.229428 GTGGTGTGAGTGGTCATGTG 58.771 55.000 0.00 0.00 34.36 3.21
526 527 4.306967 TGCATCCGCGTGGTGTGA 62.307 61.111 21.54 2.20 42.97 3.58
560 561 1.748879 GTGCCAATTGGAGCCGCTA 60.749 57.895 29.02 1.68 37.39 4.26
590 592 5.528690 GTGGTTAAAGGTTAACGAGGAAGTT 59.471 40.000 0.00 0.00 38.07 2.66
599 601 5.989551 TCTCGTTGTGGTTAAAGGTTAAC 57.010 39.130 0.00 0.00 0.00 2.01
630 632 7.712205 ACATGGAAAAAGATCTGAAAAACAAGG 59.288 33.333 0.00 0.00 0.00 3.61
684 1331 5.568620 AGTTAGGATTTGCTATCCGGAAT 57.431 39.130 9.01 0.00 42.87 3.01
795 1443 0.739462 TATGGTTGTGCGGCGAGAAG 60.739 55.000 12.98 0.00 0.00 2.85
1142 1794 1.117150 CGGGAATCGGAAACCCTCTA 58.883 55.000 16.80 0.00 41.28 2.43
1193 1845 2.125350 GCAGCTCGAGAACCAGGG 60.125 66.667 18.75 0.00 0.00 4.45
1234 1886 1.746470 TCGCGACCTAGATCTGAACA 58.254 50.000 3.71 0.00 0.00 3.18
1238 1894 3.355626 TCAAATCGCGACCTAGATCTG 57.644 47.619 12.93 0.00 0.00 2.90
1254 1910 3.286353 TCAGCACACAGGTCAATTCAAA 58.714 40.909 0.00 0.00 0.00 2.69
1298 1954 3.264947 TGTCATGATTCTGGAAAGCTCG 58.735 45.455 0.00 0.00 0.00 5.03
1306 1962 2.100418 TCGAGCTCTGTCATGATTCTGG 59.900 50.000 12.85 0.00 0.00 3.86
1329 1985 2.484264 AGCAGCAACCTTCATCGTAAAC 59.516 45.455 0.00 0.00 0.00 2.01
1331 1987 2.076100 CAGCAGCAACCTTCATCGTAA 58.924 47.619 0.00 0.00 0.00 3.18
1339 1995 1.833934 CAACCCCAGCAGCAACCTT 60.834 57.895 0.00 0.00 0.00 3.50
1469 2128 3.833070 GAGTGTTACTTCCAGAAGGAGGA 59.167 47.826 11.87 0.00 46.74 3.71
1475 2134 6.459066 CAGAATCTGAGTGTTACTTCCAGAA 58.541 40.000 3.77 0.00 34.23 3.02
1493 2186 1.325943 GCAAGACTACGCAGCAGAATC 59.674 52.381 0.00 0.00 0.00 2.52
1718 2415 6.096001 AGGTATAAGCTTCTGCAATTTTCTGG 59.904 38.462 0.00 0.00 42.74 3.86
1900 2597 5.372373 GAGCTCCAAATAGTGAAATAGGCT 58.628 41.667 0.87 0.00 0.00 4.58
1942 2639 2.375146 GCCACGACCCCAGATAAAAAT 58.625 47.619 0.00 0.00 0.00 1.82
1955 2652 1.860950 TCTACGACTATACGCCACGAC 59.139 52.381 0.00 0.00 36.70 4.34
1961 2658 6.091849 TCTGTATCCAATCTACGACTATACGC 59.908 42.308 0.00 0.00 36.70 4.42
2020 2717 5.494632 TGTCAATCGCGAACTATAGAAGA 57.505 39.130 15.24 0.00 0.00 2.87
2054 2751 4.491924 CGTAAATCCATTTCGTCGGTTCTG 60.492 45.833 0.00 0.00 0.00 3.02
2055 2752 3.615496 CGTAAATCCATTTCGTCGGTTCT 59.385 43.478 0.00 0.00 0.00 3.01
2060 2757 2.542597 TCCCGTAAATCCATTTCGTCG 58.457 47.619 0.00 0.00 0.00 5.12
2061 2758 4.950434 TTTCCCGTAAATCCATTTCGTC 57.050 40.909 0.00 0.00 0.00 4.20
2077 2774 1.002773 AGGTACGTGGTCACATTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
2087 2784 3.313249 GCAAAACTGTAAAGGTACGTGGT 59.687 43.478 0.00 0.00 32.40 4.16
2104 2801 5.916318 AGGAAAACAACTCATCATGCAAAA 58.084 33.333 0.00 0.00 0.00 2.44
2136 2833 6.476378 AGGACATAACAGTTAACTTCATGCT 58.524 36.000 5.07 1.35 0.00 3.79
2137 2834 6.743575 AGGACATAACAGTTAACTTCATGC 57.256 37.500 5.07 6.19 0.00 4.06
2197 2894 7.230510 ACAAAAGCATGTTACTGAGGATGTTTA 59.769 33.333 0.00 0.00 0.00 2.01
2198 2895 6.040842 ACAAAAGCATGTTACTGAGGATGTTT 59.959 34.615 0.00 0.00 0.00 2.83
2206 2903 6.092944 CCCGTATTACAAAAGCATGTTACTGA 59.907 38.462 0.00 0.00 34.75 3.41
2209 2906 5.032220 GCCCGTATTACAAAAGCATGTTAC 58.968 41.667 0.00 0.00 34.75 2.50
2224 2921 3.094572 AGCCGTACTATATGCCCGTATT 58.905 45.455 0.00 0.00 0.00 1.89
2230 2927 4.022242 TCTCTTTCAGCCGTACTATATGCC 60.022 45.833 0.00 0.00 0.00 4.40
2369 3066 2.163412 GCCTGAATATGTGCGGTTTCAA 59.837 45.455 0.00 0.00 0.00 2.69
2414 3111 5.339423 TCATAGGATCCCATGTCTGACTA 57.661 43.478 18.23 0.00 0.00 2.59
2431 3128 7.485595 CGAGAATCAAGAGTCTATGCATCATAG 59.514 40.741 0.19 7.36 39.21 2.23
2473 3170 1.325640 CCGTCACTGCATCGAATTCAG 59.674 52.381 6.22 9.47 0.00 3.02
2493 3190 4.273480 TCTTCAACTCAAGCTAACAAGTGC 59.727 41.667 0.00 0.00 0.00 4.40
2509 3206 2.086054 ACGAGACTGCCATCTTCAAC 57.914 50.000 0.00 0.00 0.00 3.18
2517 3214 0.319900 GCTCAGAAACGAGACTGCCA 60.320 55.000 0.00 0.00 34.79 4.92
2542 3239 8.653191 TGTAAGGTACTCATTTTCAAAGGTCTA 58.347 33.333 0.00 0.00 38.49 2.59
2543 3240 7.514721 TGTAAGGTACTCATTTTCAAAGGTCT 58.485 34.615 0.00 0.00 38.49 3.85
2700 3398 6.849085 ATAACACCATAAACATTTCAGGCA 57.151 33.333 0.00 0.00 0.00 4.75
2737 3435 7.118245 CGAACTATCATGGATTATTTGCTGCTA 59.882 37.037 0.00 0.00 0.00 3.49
2741 3439 7.807977 AACGAACTATCATGGATTATTTGCT 57.192 32.000 0.00 0.00 0.00 3.91
2753 3451 6.751514 TGTGCCAAATAAACGAACTATCAT 57.248 33.333 0.00 0.00 0.00 2.45
2769 3467 4.104383 AGGAAAAGAGAGAATGTGCCAA 57.896 40.909 0.00 0.00 0.00 4.52
2785 3483 4.618635 TCATCATAATGCCCCAAAGGAAA 58.381 39.130 0.00 0.00 38.24 3.13
2794 3492 4.660789 ACAAAAGCTCATCATAATGCCC 57.339 40.909 0.00 0.00 32.58 5.36
2923 3813 4.900635 AGCATTAAATAGGAAAGCCGTG 57.099 40.909 0.00 0.00 39.96 4.94
2925 3815 5.516339 CACAAAGCATTAAATAGGAAAGCCG 59.484 40.000 0.00 0.00 39.96 5.52
2978 3868 7.698130 GGCTCAACAGTTCATTGATAACATAAC 59.302 37.037 0.00 0.00 35.57 1.89
3155 4047 8.711457 TGATGATAACATAATATGAGTGCAACG 58.289 33.333 7.33 0.00 38.38 4.10
3462 4357 5.279006 CCAAGAAAAAGCTTTCCCCTCTTAC 60.279 44.000 13.10 0.00 41.72 2.34
3464 4359 3.643320 CCAAGAAAAAGCTTTCCCCTCTT 59.357 43.478 13.10 14.31 41.72 2.85
3466 4361 2.289072 GCCAAGAAAAAGCTTTCCCCTC 60.289 50.000 13.10 7.23 41.72 4.30
3467 4362 1.694150 GCCAAGAAAAAGCTTTCCCCT 59.306 47.619 13.10 7.11 41.72 4.79
3511 4408 4.319261 GGTGTCCGTGTCACAAAATTCTAC 60.319 45.833 3.42 0.00 37.52 2.59
3517 4414 1.339247 ACAGGTGTCCGTGTCACAAAA 60.339 47.619 3.42 0.00 34.76 2.44
3554 4451 1.153823 CAGGTCCTCGTGCTAACCG 60.154 63.158 0.00 0.00 36.87 4.44
3562 4459 1.341089 TGCACTAGATCAGGTCCTCGT 60.341 52.381 0.00 0.00 0.00 4.18
3667 4565 2.847327 ATGGCACTCGGGATGATAAG 57.153 50.000 0.00 0.00 0.00 1.73
3677 4575 3.308053 CAGAACACATTCTATGGCACTCG 59.692 47.826 0.00 0.00 43.69 4.18
3678 4576 4.256920 ACAGAACACATTCTATGGCACTC 58.743 43.478 0.00 0.00 43.69 3.51
3679 4577 4.019860 AGACAGAACACATTCTATGGCACT 60.020 41.667 0.00 0.00 43.69 4.40
3680 4578 4.093998 CAGACAGAACACATTCTATGGCAC 59.906 45.833 0.00 0.00 43.69 5.01
3681 4579 4.256110 CAGACAGAACACATTCTATGGCA 58.744 43.478 0.00 0.00 43.69 4.92
3682 4580 3.064545 GCAGACAGAACACATTCTATGGC 59.935 47.826 0.00 0.00 43.69 4.40
3683 4581 3.308053 CGCAGACAGAACACATTCTATGG 59.692 47.826 0.00 0.00 43.69 2.74
3716 4697 7.739498 ACAGAACAGTTACCGAAAAATACAT 57.261 32.000 0.00 0.00 0.00 2.29
3730 4712 5.240623 TCAGTCACAAACAAACAGAACAGTT 59.759 36.000 0.00 0.00 0.00 3.16
3745 4727 9.491675 AATGAATAATGCAATTTTCAGTCACAA 57.508 25.926 12.26 0.00 37.04 3.33
3746 4728 8.927721 CAATGAATAATGCAATTTTCAGTCACA 58.072 29.630 12.26 0.00 37.04 3.58
3747 4729 9.142515 TCAATGAATAATGCAATTTTCAGTCAC 57.857 29.630 12.26 0.00 37.04 3.67
3812 4794 4.321974 GGCCACCAAAAATAGAAAGGACAG 60.322 45.833 0.00 0.00 0.00 3.51
3813 4795 3.576550 GGCCACCAAAAATAGAAAGGACA 59.423 43.478 0.00 0.00 0.00 4.02
3970 4958 8.871629 AACATGGTAATGACAAAACTGGTATA 57.128 30.769 0.00 0.00 37.24 1.47
3971 4959 7.775053 AACATGGTAATGACAAAACTGGTAT 57.225 32.000 0.00 0.00 37.24 2.73
4043 5031 9.108284 TCACGATCAAATAAATCATCTTTAGCA 57.892 29.630 0.00 0.00 0.00 3.49
4126 5114 1.888215 TCGTGTACGAGTCTTCTGGT 58.112 50.000 2.55 0.00 44.22 4.00
4137 5125 2.403987 CCGCCTCTCTCGTGTACG 59.596 66.667 0.00 0.00 41.45 3.67
4330 5336 0.895530 TTTGTAGGGAGCCAGTCGAG 59.104 55.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.