Multiple sequence alignment - TraesCS5A01G084000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G084000 chr5A 100.000 4340 0 0 1 4340 109939484 109943823 0.000000e+00 8015.0
1 TraesCS5A01G084000 chr5A 79.620 368 53 16 1081 1437 109928834 109929190 1.210000e-60 244.0
2 TraesCS5A01G084000 chr5A 82.530 166 27 2 3963 4127 334006024 334006188 1.260000e-30 145.0
3 TraesCS5A01G084000 chr5D 89.567 3671 213 68 34 3667 106685429 106681892 0.000000e+00 4501.0
4 TraesCS5A01G084000 chr5D 75.676 444 83 19 3695 4129 561708606 561709033 9.520000e-47 198.0
5 TraesCS5A01G084000 chr5D 86.517 178 24 0 1260 1437 106817815 106817638 3.420000e-46 196.0
6 TraesCS5A01G084000 chr5B 91.213 1377 75 22 1818 3172 115383374 115384726 0.000000e+00 1831.0
7 TraesCS5A01G084000 chr5B 87.244 1027 57 19 839 1829 115375736 115376724 0.000000e+00 1103.0
8 TraesCS5A01G084000 chr5B 88.986 690 60 10 3179 3865 115388118 115388794 0.000000e+00 839.0
9 TraesCS5A01G084000 chr5B 89.069 247 12 10 595 832 115372238 115372478 4.250000e-75 292.0
10 TraesCS5A01G084000 chr7D 81.834 589 89 13 11 593 524920016 524920592 3.040000e-131 479.0
11 TraesCS5A01G084000 chr7D 80.149 403 72 7 3642 4042 125452177 125451781 1.180000e-75 294.0
12 TraesCS5A01G084000 chr7D 73.962 626 99 44 3525 4127 263372340 263372924 1.230000e-45 195.0
13 TraesCS5A01G084000 chr7D 78.289 304 59 4 3673 3976 539246780 539247076 5.730000e-44 189.0
14 TraesCS5A01G084000 chr1A 81.090 587 95 11 11 593 555611277 555610703 5.120000e-124 455.0
15 TraesCS5A01G084000 chr1A 83.162 487 66 6 11 494 12377275 12377748 8.620000e-117 431.0
16 TraesCS5A01G084000 chr1A 79.526 591 89 22 11 596 547305145 547304582 4.070000e-105 392.0
17 TraesCS5A01G084000 chr1A 80.000 195 35 3 403 595 322570246 322570054 1.630000e-29 141.0
18 TraesCS5A01G084000 chr7B 81.651 545 92 7 11 552 728196126 728196665 3.080000e-121 446.0
19 TraesCS5A01G084000 chr7B 80.717 586 83 14 11 593 581372522 581371964 3.100000e-116 429.0
20 TraesCS5A01G084000 chr3D 81.058 586 86 17 13 595 346955024 346954461 1.110000e-120 444.0
21 TraesCS5A01G084000 chr3D 77.181 149 28 6 343 488 13717321 13717176 1.000000e-11 82.4
22 TraesCS5A01G084000 chr4A 79.896 577 87 16 12 585 38572368 38571818 3.150000e-106 396.0
23 TraesCS5A01G084000 chr1D 81.458 480 80 9 13 488 194218767 194219241 6.810000e-103 385.0
24 TraesCS5A01G084000 chr2D 78.029 619 113 16 3515 4117 563148706 563148095 6.860000e-98 368.0
25 TraesCS5A01G084000 chr2D 85.417 144 20 1 453 595 54867608 54867751 9.720000e-32 148.0
26 TraesCS5A01G084000 chr2D 78.409 176 33 5 423 595 618201541 618201714 4.590000e-20 110.0
27 TraesCS5A01G084000 chrUn 78.017 605 110 15 3516 4104 88528987 88529584 4.130000e-95 359.0
28 TraesCS5A01G084000 chrUn 78.990 495 89 13 3618 4104 348692228 348691741 1.510000e-84 324.0
29 TraesCS5A01G084000 chr2B 80.000 475 84 10 3617 4086 788226268 788225800 1.490000e-89 340.0
30 TraesCS5A01G084000 chr6B 79.858 422 80 5 3624 4042 705522196 705521777 1.960000e-78 303.0
31 TraesCS5A01G084000 chr4B 76.964 560 111 10 3516 4062 605566445 605565891 1.960000e-78 303.0
32 TraesCS5A01G084000 chr4B 95.556 90 4 0 991 1080 364229839 364229928 1.260000e-30 145.0
33 TraesCS5A01G084000 chr1B 75.000 324 68 8 3779 4095 430639683 430640000 2.100000e-28 137.0
34 TraesCS5A01G084000 chr1B 79.091 110 20 3 485 593 28294623 28294730 6.020000e-09 73.1
35 TraesCS5A01G084000 chr7A 80.451 133 24 2 453 584 486174239 486174370 2.760000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G084000 chr5A 109939484 109943823 4339 False 8015.0 8015 100.0000 1 4340 1 chr5A.!!$F2 4339
1 TraesCS5A01G084000 chr5D 106681892 106685429 3537 True 4501.0 4501 89.5670 34 3667 1 chr5D.!!$R1 3633
2 TraesCS5A01G084000 chr5B 115383374 115388794 5420 False 1335.0 1831 90.0995 1818 3865 2 chr5B.!!$F2 2047
3 TraesCS5A01G084000 chr5B 115372238 115376724 4486 False 697.5 1103 88.1565 595 1829 2 chr5B.!!$F1 1234
4 TraesCS5A01G084000 chr7D 524920016 524920592 576 False 479.0 479 81.8340 11 593 1 chr7D.!!$F2 582
5 TraesCS5A01G084000 chr1A 555610703 555611277 574 True 455.0 455 81.0900 11 593 1 chr1A.!!$R3 582
6 TraesCS5A01G084000 chr1A 547304582 547305145 563 True 392.0 392 79.5260 11 596 1 chr1A.!!$R2 585
7 TraesCS5A01G084000 chr7B 728196126 728196665 539 False 446.0 446 81.6510 11 552 1 chr7B.!!$F1 541
8 TraesCS5A01G084000 chr7B 581371964 581372522 558 True 429.0 429 80.7170 11 593 1 chr7B.!!$R1 582
9 TraesCS5A01G084000 chr3D 346954461 346955024 563 True 444.0 444 81.0580 13 595 1 chr3D.!!$R2 582
10 TraesCS5A01G084000 chr4A 38571818 38572368 550 True 396.0 396 79.8960 12 585 1 chr4A.!!$R1 573
11 TraesCS5A01G084000 chr2D 563148095 563148706 611 True 368.0 368 78.0290 3515 4117 1 chr2D.!!$R1 602
12 TraesCS5A01G084000 chrUn 88528987 88529584 597 False 359.0 359 78.0170 3516 4104 1 chrUn.!!$F1 588
13 TraesCS5A01G084000 chr4B 605565891 605566445 554 True 303.0 303 76.9640 3516 4062 1 chr4B.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 860 0.102663 GCCACCTTAGCTCGTACTCC 59.897 60.0 0.00 0.0 0.00 3.85 F
1530 4875 0.178068 CCACGGGCAGCATAGTACTT 59.822 55.0 0.00 0.0 0.00 2.24 F
1920 5316 0.240945 GTTTGCAAGCACGCAGGTAT 59.759 50.0 8.58 0.0 44.14 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 5570 0.044092 TTGGCACCTCCTCCATCCTA 59.956 55.0 0.00 0.0 35.26 2.94 R
2887 6305 0.038599 ATGACCACAGCAATGCCAGA 59.961 50.0 0.00 0.0 0.00 3.86 R
3746 10582 0.251916 GGTTGGATCCGGTGATGACA 59.748 55.0 7.39 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 138 2.254459 CATAGCATACGTGGCGATCTC 58.746 52.381 0.00 0.00 36.08 2.75
185 188 2.042843 GAGAGCGGGGGAGAGGAA 60.043 66.667 0.00 0.00 0.00 3.36
237 240 1.319947 AGGAGGTGGATGGTCTAGGA 58.680 55.000 0.00 0.00 0.00 2.94
269 272 1.594331 GGCCGACTTAAATAGCCAGG 58.406 55.000 0.00 0.00 43.32 4.45
447 479 2.642807 CCCGTATCCTCCCCATATTTGT 59.357 50.000 0.00 0.00 0.00 2.83
533 568 7.121020 GGGTTAAAATTTTATGACCGGTCAGTA 59.879 37.037 37.98 26.41 43.61 2.74
571 606 0.106918 ACGTTTGAGGCTGGTTTGGA 60.107 50.000 0.00 0.00 0.00 3.53
597 632 4.081198 GCCTGGCTGTAGATGCTCTAATAT 60.081 45.833 12.43 0.00 29.58 1.28
670 737 3.182967 GCGATCCCATCTTATAAGCTCG 58.817 50.000 7.67 9.40 0.00 5.03
671 738 3.119459 GCGATCCCATCTTATAAGCTCGA 60.119 47.826 7.67 1.43 0.00 4.04
672 739 4.440802 GCGATCCCATCTTATAAGCTCGAT 60.441 45.833 7.67 5.89 0.00 3.59
673 740 5.277825 CGATCCCATCTTATAAGCTCGATC 58.722 45.833 7.67 12.45 0.00 3.69
674 741 5.067153 CGATCCCATCTTATAAGCTCGATCT 59.933 44.000 7.67 0.00 0.00 2.75
675 742 6.405286 CGATCCCATCTTATAAGCTCGATCTT 60.405 42.308 7.67 6.75 0.00 2.40
676 743 6.274157 TCCCATCTTATAAGCTCGATCTTC 57.726 41.667 4.50 0.00 0.00 2.87
677 744 5.186021 TCCCATCTTATAAGCTCGATCTTCC 59.814 44.000 4.50 0.00 0.00 3.46
678 745 5.047021 CCCATCTTATAAGCTCGATCTTCCA 60.047 44.000 4.50 0.00 0.00 3.53
679 746 5.866633 CCATCTTATAAGCTCGATCTTCCAC 59.133 44.000 4.50 0.00 0.00 4.02
680 747 5.455056 TCTTATAAGCTCGATCTTCCACC 57.545 43.478 4.50 0.00 0.00 4.61
681 748 5.141182 TCTTATAAGCTCGATCTTCCACCT 58.859 41.667 4.50 0.00 0.00 4.00
682 749 6.304624 TCTTATAAGCTCGATCTTCCACCTA 58.695 40.000 4.50 0.00 0.00 3.08
683 750 6.431543 TCTTATAAGCTCGATCTTCCACCTAG 59.568 42.308 4.50 0.00 0.00 3.02
684 751 1.036707 AGCTCGATCTTCCACCTAGC 58.963 55.000 0.00 0.00 0.00 3.42
685 752 0.318275 GCTCGATCTTCCACCTAGCG 60.318 60.000 0.00 0.00 0.00 4.26
686 753 0.312416 CTCGATCTTCCACCTAGCGG 59.688 60.000 0.00 0.00 0.00 5.52
687 754 1.300233 CGATCTTCCACCTAGCGGC 60.300 63.158 0.00 0.00 0.00 6.53
688 755 1.300233 GATCTTCCACCTAGCGGCG 60.300 63.158 0.51 0.51 0.00 6.46
689 756 2.701163 GATCTTCCACCTAGCGGCGG 62.701 65.000 9.78 0.00 33.56 6.13
690 757 4.530857 CTTCCACCTAGCGGCGGG 62.531 72.222 9.78 3.67 33.09 6.13
722 789 2.768527 GACCTCATCTGGTGATCTGGAA 59.231 50.000 2.05 0.00 41.00 3.53
792 859 0.815734 TGCCACCTTAGCTCGTACTC 59.184 55.000 0.00 0.00 0.00 2.59
793 860 0.102663 GCCACCTTAGCTCGTACTCC 59.897 60.000 0.00 0.00 0.00 3.85
794 861 1.471119 CCACCTTAGCTCGTACTCCA 58.529 55.000 0.00 0.00 0.00 3.86
795 862 1.405821 CCACCTTAGCTCGTACTCCAG 59.594 57.143 0.00 0.00 0.00 3.86
796 863 2.366533 CACCTTAGCTCGTACTCCAGA 58.633 52.381 0.00 0.00 0.00 3.86
797 864 2.952978 CACCTTAGCTCGTACTCCAGAT 59.047 50.000 0.00 0.00 0.00 2.90
818 885 5.645497 AGATCACAATACAAGTGGAAAGAGC 59.355 40.000 0.00 0.00 37.58 4.09
819 886 4.072131 TCACAATACAAGTGGAAAGAGCC 58.928 43.478 0.00 0.00 37.58 4.70
853 4171 6.539173 TCCTCTCTCCTTATAAGCAGAGTAG 58.461 44.000 25.89 21.17 34.98 2.57
979 4313 3.475774 GTGGTTACACGGCGAGCG 61.476 66.667 16.62 3.73 37.94 5.03
1030 4364 4.838486 GCGACGACGAGGAGCAGG 62.838 72.222 12.29 0.00 42.66 4.85
1032 4366 3.749064 GACGACGAGGAGCAGGCA 61.749 66.667 0.00 0.00 0.00 4.75
1210 4544 0.594602 CTGACGTGTGTTCCGGTAGA 59.405 55.000 0.00 0.00 0.00 2.59
1211 4545 1.201647 CTGACGTGTGTTCCGGTAGAT 59.798 52.381 0.00 0.00 0.00 1.98
1222 4556 0.179000 CCGGTAGATCCAAAGCTGCT 59.821 55.000 0.00 0.00 35.57 4.24
1515 4860 2.929592 GCCAGGTACTTAGTTGACCACG 60.930 54.545 7.03 0.00 34.60 4.94
1530 4875 0.178068 CCACGGGCAGCATAGTACTT 59.822 55.000 0.00 0.00 0.00 2.24
1539 4884 5.163395 GGGCAGCATAGTACTTCTCTTTAGT 60.163 44.000 0.00 0.00 0.00 2.24
1540 4885 5.980715 GGCAGCATAGTACTTCTCTTTAGTC 59.019 44.000 0.00 0.00 0.00 2.59
1541 4886 6.405953 GGCAGCATAGTACTTCTCTTTAGTCA 60.406 42.308 0.00 0.00 0.00 3.41
1542 4887 7.036220 GCAGCATAGTACTTCTCTTTAGTCAA 58.964 38.462 0.00 0.00 0.00 3.18
1543 4888 7.708752 GCAGCATAGTACTTCTCTTTAGTCAAT 59.291 37.037 0.00 0.00 0.00 2.57
1544 4889 9.029243 CAGCATAGTACTTCTCTTTAGTCAATG 57.971 37.037 0.00 0.00 0.00 2.82
1545 4890 8.200792 AGCATAGTACTTCTCTTTAGTCAATGG 58.799 37.037 0.00 0.00 0.00 3.16
1546 4891 7.982354 GCATAGTACTTCTCTTTAGTCAATGGT 59.018 37.037 0.00 0.00 0.00 3.55
1547 4892 9.522804 CATAGTACTTCTCTTTAGTCAATGGTC 57.477 37.037 0.00 0.00 0.00 4.02
1548 4893 6.937392 AGTACTTCTCTTTAGTCAATGGTCC 58.063 40.000 0.00 0.00 0.00 4.46
1549 4894 5.825593 ACTTCTCTTTAGTCAATGGTCCA 57.174 39.130 0.00 0.00 0.00 4.02
1550 4895 5.552178 ACTTCTCTTTAGTCAATGGTCCAC 58.448 41.667 0.00 0.00 0.00 4.02
1551 4896 4.188247 TCTCTTTAGTCAATGGTCCACG 57.812 45.455 0.00 0.00 0.00 4.94
1552 4897 3.576982 TCTCTTTAGTCAATGGTCCACGT 59.423 43.478 0.00 0.00 0.00 4.49
1553 4898 4.039973 TCTCTTTAGTCAATGGTCCACGTT 59.960 41.667 0.00 0.00 0.00 3.99
1554 4899 4.710324 TCTTTAGTCAATGGTCCACGTTT 58.290 39.130 0.00 0.00 0.00 3.60
1555 4900 5.127491 TCTTTAGTCAATGGTCCACGTTTT 58.873 37.500 0.00 0.00 0.00 2.43
1556 4901 6.289834 TCTTTAGTCAATGGTCCACGTTTTA 58.710 36.000 0.00 0.00 0.00 1.52
1557 4902 5.927954 TTAGTCAATGGTCCACGTTTTAC 57.072 39.130 0.00 0.00 0.00 2.01
1558 4903 4.081322 AGTCAATGGTCCACGTTTTACT 57.919 40.909 0.00 0.00 0.00 2.24
1695 5090 6.952773 TTTGGCAAGAACACTTGTTATAGT 57.047 33.333 0.00 0.00 41.85 2.12
1701 5096 9.542462 GGCAAGAACACTTGTTATAGTATATGA 57.458 33.333 10.82 0.00 41.85 2.15
1726 5122 3.184986 GTGCATGATTTGACTTTTGGTGC 59.815 43.478 0.00 0.00 0.00 5.01
1727 5123 2.738314 GCATGATTTGACTTTTGGTGCC 59.262 45.455 0.00 0.00 0.00 5.01
1778 5174 5.887754 ACCCTAGGAAATTTTGCTGACTAA 58.112 37.500 11.48 0.00 31.99 2.24
1920 5316 0.240945 GTTTGCAAGCACGCAGGTAT 59.759 50.000 8.58 0.00 44.14 2.73
1956 5352 7.991084 TTATATAAGTTCGCTACCTAGAGCA 57.009 36.000 4.49 0.00 42.99 4.26
1991 5388 8.437742 GCAGAGAAATTTTGGTTGAAATGTATG 58.562 33.333 0.00 0.00 30.06 2.39
2052 5449 2.672874 TGGAAATTTGATCTCGCTCGTG 59.327 45.455 0.00 0.00 0.00 4.35
2083 5480 9.515226 TGGGAAATGACAAGGTATATAATTAGC 57.485 33.333 0.00 0.00 0.00 3.09
2084 5481 9.515226 GGGAAATGACAAGGTATATAATTAGCA 57.485 33.333 0.00 0.00 0.00 3.49
2141 5554 0.311477 TGTGTCATCGAACCGACGAA 59.689 50.000 0.00 0.00 45.16 3.85
2152 5565 2.589798 ACCGACGAACTTCTGAAACA 57.410 45.000 0.00 0.00 0.00 2.83
2156 5569 3.302480 CCGACGAACTTCTGAAACAACTG 60.302 47.826 0.00 0.00 0.00 3.16
2157 5570 3.306166 CGACGAACTTCTGAAACAACTGT 59.694 43.478 0.00 0.00 0.00 3.55
2297 5710 2.770130 GGCCATGAACCCCAAGGA 59.230 61.111 0.00 0.00 35.72 3.36
2322 5735 0.388649 CTTTCTCCCTGACACGTCGG 60.389 60.000 0.00 0.00 35.77 4.79
2418 5831 0.447801 GGCGTTTGTATGGTGAGCAG 59.552 55.000 0.00 0.00 0.00 4.24
2419 5832 1.438651 GCGTTTGTATGGTGAGCAGA 58.561 50.000 0.00 0.00 0.00 4.26
2422 5835 3.261580 CGTTTGTATGGTGAGCAGATCA 58.738 45.455 0.00 0.00 34.79 2.92
2423 5836 3.308053 CGTTTGTATGGTGAGCAGATCAG 59.692 47.826 0.00 0.00 39.07 2.90
2426 5839 4.128925 TGTATGGTGAGCAGATCAGTTC 57.871 45.455 0.00 0.00 39.07 3.01
2427 5840 3.515104 TGTATGGTGAGCAGATCAGTTCA 59.485 43.478 0.39 0.39 39.07 3.18
2428 5841 3.708403 ATGGTGAGCAGATCAGTTCAA 57.292 42.857 6.23 0.00 39.07 2.69
2429 5842 2.771089 TGGTGAGCAGATCAGTTCAAC 58.229 47.619 12.23 12.23 39.07 3.18
2431 5844 2.999355 GGTGAGCAGATCAGTTCAACTC 59.001 50.000 11.92 0.00 39.07 3.01
2433 5846 2.634453 TGAGCAGATCAGTTCAACTCCA 59.366 45.455 2.11 0.00 32.77 3.86
2434 5847 2.999355 GAGCAGATCAGTTCAACTCCAC 59.001 50.000 0.00 0.00 0.00 4.02
2435 5848 1.728971 GCAGATCAGTTCAACTCCACG 59.271 52.381 0.00 0.00 0.00 4.94
2437 5850 3.653344 CAGATCAGTTCAACTCCACGAA 58.347 45.455 0.00 0.00 0.00 3.85
2438 5851 3.430218 CAGATCAGTTCAACTCCACGAAC 59.570 47.826 0.00 0.00 41.48 3.95
2439 5852 2.971660 TCAGTTCAACTCCACGAACA 57.028 45.000 5.21 0.00 43.20 3.18
2440 5853 3.469008 TCAGTTCAACTCCACGAACAT 57.531 42.857 5.21 0.00 43.20 2.71
2442 5855 1.873591 AGTTCAACTCCACGAACATGC 59.126 47.619 5.21 0.00 43.20 4.06
2443 5856 1.873591 GTTCAACTCCACGAACATGCT 59.126 47.619 0.00 0.00 40.97 3.79
2444 5857 3.064207 GTTCAACTCCACGAACATGCTA 58.936 45.455 0.00 0.00 40.97 3.49
2445 5858 2.959516 TCAACTCCACGAACATGCTAG 58.040 47.619 0.00 0.00 0.00 3.42
2446 5859 1.394917 CAACTCCACGAACATGCTAGC 59.605 52.381 8.10 8.10 0.00 3.42
2447 5860 0.608130 ACTCCACGAACATGCTAGCA 59.392 50.000 21.85 21.85 0.00 3.49
2448 5861 1.208052 ACTCCACGAACATGCTAGCAT 59.792 47.619 24.67 24.67 37.08 3.79
2449 5862 1.863454 CTCCACGAACATGCTAGCATC 59.137 52.381 27.34 16.37 33.90 3.91
2450 5863 1.482182 TCCACGAACATGCTAGCATCT 59.518 47.619 27.34 17.15 33.90 2.90
2451 5864 1.863454 CCACGAACATGCTAGCATCTC 59.137 52.381 27.34 22.86 33.90 2.75
2452 5865 1.520174 CACGAACATGCTAGCATCTCG 59.480 52.381 35.28 35.28 41.11 4.04
2453 5866 1.135139 ACGAACATGCTAGCATCTCGT 59.865 47.619 36.19 36.19 42.34 4.18
2454 5867 2.196749 CGAACATGCTAGCATCTCGTT 58.803 47.619 32.02 28.51 35.65 3.85
2455 5868 2.604914 CGAACATGCTAGCATCTCGTTT 59.395 45.455 32.02 20.16 35.65 3.60
2471 5884 3.977427 TCGTTTGGGTATGATCAGATCG 58.023 45.455 0.09 0.00 0.00 3.69
2508 5921 9.482627 GTTATGAACAATGTTTGGTTTGGATTA 57.517 29.630 0.00 0.00 34.12 1.75
2527 5940 2.675658 ATGTAACCAGGGCTGTGTTT 57.324 45.000 0.00 0.00 0.00 2.83
2631 6044 3.082579 GCGCCAAACCACCACCAAA 62.083 57.895 0.00 0.00 0.00 3.28
2638 6051 1.544724 AACCACCACCAAATCCGATG 58.455 50.000 0.00 0.00 0.00 3.84
2647 6060 4.273480 CCACCAAATCCGATGTATCTCAAC 59.727 45.833 0.00 0.00 0.00 3.18
2656 6069 7.107639 TCCGATGTATCTCAACTGACAATAA 57.892 36.000 0.00 0.00 0.00 1.40
2706 6121 3.009584 ACCTTGAGAGATTTCTTCCCACC 59.990 47.826 0.00 0.00 32.53 4.61
2835 6250 5.877564 GCTGCTCTTTCTCTACAGGTTAATT 59.122 40.000 0.00 0.00 0.00 1.40
2836 6251 6.372937 GCTGCTCTTTCTCTACAGGTTAATTT 59.627 38.462 0.00 0.00 0.00 1.82
2837 6252 7.413548 GCTGCTCTTTCTCTACAGGTTAATTTC 60.414 40.741 0.00 0.00 0.00 2.17
2849 6267 6.238648 ACAGGTTAATTTCTTACACCAGAGG 58.761 40.000 0.00 0.00 0.00 3.69
2887 6305 7.222161 TCTTTCAGATGCATATAGCTTGTCAT 58.778 34.615 0.00 0.00 45.94 3.06
2891 6309 5.351740 CAGATGCATATAGCTTGTCATCTGG 59.648 44.000 24.95 15.68 43.12 3.86
2912 6330 3.441163 GCATTGCTGTGGTCATAATGTG 58.559 45.455 0.16 0.00 34.02 3.21
3043 6461 1.132640 GTTGAGTGCGTTGATCGGC 59.867 57.895 0.00 0.00 40.26 5.54
3093 6511 4.492791 TGTTCAGCTTGTGTCAATGATG 57.507 40.909 0.00 0.00 0.00 3.07
3129 6551 5.539048 TGACCAAGCTGAAAAGTAGTACTC 58.461 41.667 2.58 0.00 0.00 2.59
3380 10198 4.211374 GGCTTTGTAAGTATCATAGGCGTG 59.789 45.833 0.00 0.00 32.44 5.34
3408 10226 8.816894 AGGAGACAAACAGATAGAGATGTAAAA 58.183 33.333 0.00 0.00 0.00 1.52
3409 10227 8.874816 GGAGACAAACAGATAGAGATGTAAAAC 58.125 37.037 0.00 0.00 0.00 2.43
3410 10228 9.646427 GAGACAAACAGATAGAGATGTAAAACT 57.354 33.333 0.00 0.00 0.00 2.66
3512 10331 8.948631 TCAAAATAGAGCATCGAAAAGATACT 57.051 30.769 0.00 0.00 42.67 2.12
3533 10352 6.598753 ACTAACATAATTACGATGCACACC 57.401 37.500 0.00 0.00 0.00 4.16
3534 10353 6.346096 ACTAACATAATTACGATGCACACCT 58.654 36.000 0.00 0.00 0.00 4.00
3536 10355 5.023533 ACATAATTACGATGCACACCTCT 57.976 39.130 0.00 0.00 0.00 3.69
3540 10359 2.554806 TACGATGCACACCTCTAACG 57.445 50.000 0.00 0.00 0.00 3.18
3543 10362 1.402325 CGATGCACACCTCTAACGTCA 60.402 52.381 0.00 0.00 0.00 4.35
3547 10368 2.224185 TGCACACCTCTAACGTCAACAT 60.224 45.455 0.00 0.00 0.00 2.71
3554 10378 6.071784 ACACCTCTAACGTCAACATATACACA 60.072 38.462 0.00 0.00 0.00 3.72
3638 10473 2.145958 AGCAATCAGATCCGTGATCG 57.854 50.000 7.85 4.69 43.17 3.69
3663 10499 7.808381 CGGTAAACTACGACAATGATCATATCT 59.192 37.037 9.04 3.55 0.00 1.98
3672 10508 7.148457 ACGACAATGATCATATCTGCATCAATC 60.148 37.037 9.04 0.00 30.43 2.67
3684 10520 5.621193 TCTGCATCAATCATCTCATGACAT 58.379 37.500 0.00 0.00 43.01 3.06
3715 10551 3.265791 GACGAGATTCTCCAACAGCAAT 58.734 45.455 8.09 0.00 0.00 3.56
3722 10558 0.169672 CTCCAACAGCAATGCCTTCG 59.830 55.000 0.00 0.00 0.00 3.79
3725 10561 1.978617 AACAGCAATGCCTTCGGGG 60.979 57.895 0.00 0.00 35.16 5.73
3823 10659 1.080434 GTCCGAGCATATCCGAGCC 60.080 63.158 0.00 0.00 0.00 4.70
3881 10717 2.684001 TGCCAGGTATAACCAACTCG 57.316 50.000 0.00 0.00 41.95 4.18
3882 10718 1.903860 TGCCAGGTATAACCAACTCGT 59.096 47.619 0.00 0.00 41.95 4.18
3885 10721 3.518590 CCAGGTATAACCAACTCGTGTC 58.481 50.000 0.00 0.00 41.95 3.67
3889 10725 4.710375 AGGTATAACCAACTCGTGTCAGAT 59.290 41.667 0.00 0.00 41.95 2.90
3894 10730 3.422796 ACCAACTCGTGTCAGATCTAGT 58.577 45.455 0.00 0.00 0.00 2.57
3895 10731 3.440872 ACCAACTCGTGTCAGATCTAGTC 59.559 47.826 0.00 0.00 0.00 2.59
3906 10742 3.024547 CAGATCTAGTCTTTCACCCCGA 58.975 50.000 0.00 0.00 34.00 5.14
3909 10745 2.885616 TCTAGTCTTTCACCCCGAAGT 58.114 47.619 0.00 0.00 34.32 3.01
3916 10752 0.601558 TTCACCCCGAAGTTCGAGAG 59.398 55.000 26.37 15.67 43.74 3.20
3918 10754 1.906824 ACCCCGAAGTTCGAGAGCA 60.907 57.895 26.37 0.00 43.74 4.26
3942 10778 1.645034 CTCAAGTAGCACCACCATCG 58.355 55.000 0.00 0.00 0.00 3.84
3944 10780 1.067142 TCAAGTAGCACCACCATCGAC 60.067 52.381 0.00 0.00 0.00 4.20
3946 10782 1.214589 GTAGCACCACCATCGACGT 59.785 57.895 0.00 0.00 0.00 4.34
3948 10784 0.963856 TAGCACCACCATCGACGTCT 60.964 55.000 14.70 0.00 0.00 4.18
3950 10786 1.883732 CACCACCATCGACGTCTCT 59.116 57.895 14.70 0.00 0.00 3.10
3960 10796 1.877443 TCGACGTCTCTCATGTGTTGA 59.123 47.619 14.70 0.00 0.00 3.18
3961 10797 2.488153 TCGACGTCTCTCATGTGTTGAT 59.512 45.455 14.70 0.00 32.72 2.57
3977 10813 0.179004 TGATGCCACCACTTTTCCGT 60.179 50.000 0.00 0.00 0.00 4.69
3978 10814 0.240945 GATGCCACCACTTTTCCGTG 59.759 55.000 0.00 0.00 34.71 4.94
3983 10819 1.165270 CACCACTTTTCCGTGATCCC 58.835 55.000 0.00 0.00 37.06 3.85
3989 10825 2.158667 ACTTTTCCGTGATCCCAACAGT 60.159 45.455 0.00 0.00 0.00 3.55
4003 10839 2.483877 CCAACAGTTACATGCGATGTGT 59.516 45.455 10.77 2.68 44.60 3.72
4004 10840 3.481839 CAACAGTTACATGCGATGTGTG 58.518 45.455 10.77 8.38 44.60 3.82
4005 10841 2.766313 ACAGTTACATGCGATGTGTGT 58.234 42.857 10.77 8.84 44.60 3.72
4006 10842 3.138304 ACAGTTACATGCGATGTGTGTT 58.862 40.909 10.77 0.00 44.60 3.32
4036 10872 2.045926 ACAACCATCCCTCTGCGC 60.046 61.111 0.00 0.00 0.00 6.09
4056 10893 3.267483 GCCAAGCCGTCATTCTAGTTTA 58.733 45.455 0.00 0.00 0.00 2.01
4062 10899 5.978814 AGCCGTCATTCTAGTTTACATCTT 58.021 37.500 0.00 0.00 0.00 2.40
4063 10900 6.043411 AGCCGTCATTCTAGTTTACATCTTC 58.957 40.000 0.00 0.00 0.00 2.87
4065 10902 6.574350 CCGTCATTCTAGTTTACATCTTCCT 58.426 40.000 0.00 0.00 0.00 3.36
4068 10905 8.407064 CGTCATTCTAGTTTACATCTTCCTACT 58.593 37.037 0.00 0.00 0.00 2.57
4082 10919 3.947910 TCCTACTAAAGTCAACCACCG 57.052 47.619 0.00 0.00 0.00 4.94
4088 10925 4.091549 ACTAAAGTCAACCACCGGATCTA 58.908 43.478 9.46 0.00 0.00 1.98
4089 10926 3.611766 AAAGTCAACCACCGGATCTAG 57.388 47.619 9.46 0.00 0.00 2.43
4091 10928 2.816411 AGTCAACCACCGGATCTAGAA 58.184 47.619 9.46 0.00 0.00 2.10
4092 10929 3.170717 AGTCAACCACCGGATCTAGAAA 58.829 45.455 9.46 0.00 0.00 2.52
4095 10932 3.835978 TCAACCACCGGATCTAGAAAGAA 59.164 43.478 9.46 0.00 34.73 2.52
4096 10933 4.285003 TCAACCACCGGATCTAGAAAGAAA 59.715 41.667 9.46 0.00 34.73 2.52
4105 10942 5.938125 CGGATCTAGAAAGAAAAACCCTCAA 59.062 40.000 0.00 0.00 34.73 3.02
4106 10943 6.128254 CGGATCTAGAAAGAAAAACCCTCAAC 60.128 42.308 0.00 0.00 34.73 3.18
4107 10944 6.128254 GGATCTAGAAAGAAAAACCCTCAACG 60.128 42.308 0.00 0.00 34.73 4.10
4111 10948 5.377478 AGAAAGAAAAACCCTCAACGAGAT 58.623 37.500 0.00 0.00 0.00 2.75
4117 10954 4.351874 AAACCCTCAACGAGATCTTTCA 57.648 40.909 0.00 0.00 0.00 2.69
4118 10955 4.351874 AACCCTCAACGAGATCTTTCAA 57.648 40.909 0.00 0.00 0.00 2.69
4119 10956 4.559862 ACCCTCAACGAGATCTTTCAAT 57.440 40.909 0.00 0.00 0.00 2.57
4120 10957 4.256920 ACCCTCAACGAGATCTTTCAATG 58.743 43.478 0.00 0.00 0.00 2.82
4121 10958 3.624861 CCCTCAACGAGATCTTTCAATGG 59.375 47.826 0.00 0.00 0.00 3.16
4122 10959 3.064545 CCTCAACGAGATCTTTCAATGGC 59.935 47.826 0.00 0.00 0.00 4.40
4123 10960 3.009723 TCAACGAGATCTTTCAATGGCC 58.990 45.455 0.00 0.00 0.00 5.36
4124 10961 2.749076 CAACGAGATCTTTCAATGGCCA 59.251 45.455 8.56 8.56 0.00 5.36
4125 10962 2.359900 ACGAGATCTTTCAATGGCCAC 58.640 47.619 8.16 0.00 0.00 5.01
4126 10963 1.672881 CGAGATCTTTCAATGGCCACC 59.327 52.381 8.16 0.00 0.00 4.61
4127 10964 1.672881 GAGATCTTTCAATGGCCACCG 59.327 52.381 8.16 1.02 0.00 4.94
4128 10965 0.101219 GATCTTTCAATGGCCACCGC 59.899 55.000 8.16 0.00 0.00 5.68
4129 10966 1.656818 ATCTTTCAATGGCCACCGCG 61.657 55.000 8.16 0.00 35.02 6.46
4130 10967 3.969642 CTTTCAATGGCCACCGCGC 62.970 63.158 8.16 0.00 35.02 6.86
4156 10993 4.389576 GCGCCGTTGTGCCTTCTG 62.390 66.667 0.00 0.00 42.25 3.02
4157 10994 2.664851 CGCCGTTGTGCCTTCTGA 60.665 61.111 0.00 0.00 0.00 3.27
4158 10995 2.034879 CGCCGTTGTGCCTTCTGAT 61.035 57.895 0.00 0.00 0.00 2.90
4159 10996 1.577328 CGCCGTTGTGCCTTCTGATT 61.577 55.000 0.00 0.00 0.00 2.57
4160 10997 0.109597 GCCGTTGTGCCTTCTGATTG 60.110 55.000 0.00 0.00 0.00 2.67
4161 10998 0.523072 CCGTTGTGCCTTCTGATTGG 59.477 55.000 0.00 0.00 0.00 3.16
4162 10999 1.522668 CGTTGTGCCTTCTGATTGGA 58.477 50.000 2.01 0.00 0.00 3.53
4163 11000 1.879380 CGTTGTGCCTTCTGATTGGAA 59.121 47.619 2.01 0.00 0.00 3.53
4164 11001 2.095567 CGTTGTGCCTTCTGATTGGAAG 60.096 50.000 2.01 0.00 41.49 3.46
4165 11002 1.538047 TGTGCCTTCTGATTGGAAGC 58.462 50.000 0.00 0.00 40.76 3.86
4166 11003 0.813821 GTGCCTTCTGATTGGAAGCC 59.186 55.000 0.00 0.00 40.76 4.35
4167 11004 0.405198 TGCCTTCTGATTGGAAGCCA 59.595 50.000 0.00 0.00 40.76 4.75
4168 11005 0.813821 GCCTTCTGATTGGAAGCCAC 59.186 55.000 0.00 0.00 40.76 5.01
4169 11006 1.887956 GCCTTCTGATTGGAAGCCACA 60.888 52.381 0.00 0.00 40.76 4.17
4170 11007 1.815003 CCTTCTGATTGGAAGCCACAC 59.185 52.381 0.00 0.00 40.76 3.82
4171 11008 2.507484 CTTCTGATTGGAAGCCACACA 58.493 47.619 0.00 0.00 36.68 3.72
4172 11009 2.885135 TCTGATTGGAAGCCACACAT 57.115 45.000 0.00 0.00 30.78 3.21
4173 11010 3.998913 TCTGATTGGAAGCCACACATA 57.001 42.857 0.00 0.00 30.78 2.29
4174 11011 3.877559 TCTGATTGGAAGCCACACATAG 58.122 45.455 0.00 0.00 30.78 2.23
4175 11012 2.947652 CTGATTGGAAGCCACACATAGG 59.052 50.000 0.00 0.00 30.78 2.57
4181 11018 2.830370 GCCACACATAGGCCTGCC 60.830 66.667 17.99 0.00 46.50 4.85
4182 11019 3.350031 GCCACACATAGGCCTGCCT 62.350 63.158 17.99 16.13 46.50 4.75
4202 11039 4.458164 CGCATTCGGCAAAACCTC 57.542 55.556 0.00 0.00 45.17 3.85
4203 11040 1.154035 CGCATTCGGCAAAACCTCC 60.154 57.895 0.00 0.00 45.17 4.30
4204 11041 1.586154 CGCATTCGGCAAAACCTCCT 61.586 55.000 0.00 0.00 45.17 3.69
4205 11042 0.603065 GCATTCGGCAAAACCTCCTT 59.397 50.000 0.00 0.00 43.97 3.36
4206 11043 1.402852 GCATTCGGCAAAACCTCCTTC 60.403 52.381 0.00 0.00 43.97 3.46
4207 11044 1.135689 CATTCGGCAAAACCTCCTTCG 60.136 52.381 0.00 0.00 35.61 3.79
4208 11045 0.107081 TTCGGCAAAACCTCCTTCGA 59.893 50.000 0.00 0.00 35.61 3.71
4209 11046 0.323629 TCGGCAAAACCTCCTTCGAT 59.676 50.000 0.00 0.00 35.61 3.59
4210 11047 0.447801 CGGCAAAACCTCCTTCGATG 59.552 55.000 0.00 0.00 35.61 3.84
4211 11048 0.171231 GGCAAAACCTCCTTCGATGC 59.829 55.000 0.00 0.00 34.51 3.91
4212 11049 0.171231 GCAAAACCTCCTTCGATGCC 59.829 55.000 0.00 0.00 0.00 4.40
4213 11050 1.826385 CAAAACCTCCTTCGATGCCT 58.174 50.000 0.00 0.00 0.00 4.75
4214 11051 1.740025 CAAAACCTCCTTCGATGCCTC 59.260 52.381 0.00 0.00 0.00 4.70
4215 11052 0.253327 AAACCTCCTTCGATGCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
4216 11053 1.627297 AACCTCCTTCGATGCCTCCC 61.627 60.000 0.00 0.00 0.00 4.30
4217 11054 2.419198 CTCCTTCGATGCCTCCCG 59.581 66.667 0.00 0.00 0.00 5.14
4218 11055 2.043349 TCCTTCGATGCCTCCCGA 60.043 61.111 0.00 0.00 0.00 5.14
4219 11056 1.457643 TCCTTCGATGCCTCCCGAT 60.458 57.895 0.00 0.00 34.58 4.18
4220 11057 1.301244 CCTTCGATGCCTCCCGATG 60.301 63.158 0.00 0.00 34.58 3.84
4221 11058 1.443407 CTTCGATGCCTCCCGATGT 59.557 57.895 0.00 0.00 34.58 3.06
4222 11059 0.877649 CTTCGATGCCTCCCGATGTG 60.878 60.000 0.00 0.00 34.58 3.21
4223 11060 1.613317 TTCGATGCCTCCCGATGTGT 61.613 55.000 0.00 0.00 34.58 3.72
4224 11061 1.884464 CGATGCCTCCCGATGTGTG 60.884 63.158 0.00 0.00 0.00 3.82
4225 11062 1.522092 GATGCCTCCCGATGTGTGA 59.478 57.895 0.00 0.00 0.00 3.58
4226 11063 0.811616 GATGCCTCCCGATGTGTGAC 60.812 60.000 0.00 0.00 0.00 3.67
4227 11064 2.125106 GCCTCCCGATGTGTGACC 60.125 66.667 0.00 0.00 0.00 4.02
4228 11065 2.954684 GCCTCCCGATGTGTGACCA 61.955 63.158 0.00 0.00 0.00 4.02
4229 11066 1.907739 CCTCCCGATGTGTGACCAT 59.092 57.895 0.00 0.00 0.00 3.55
4230 11067 0.253044 CCTCCCGATGTGTGACCATT 59.747 55.000 0.00 0.00 0.00 3.16
4231 11068 1.372582 CTCCCGATGTGTGACCATTG 58.627 55.000 0.00 0.00 0.00 2.82
4232 11069 0.690192 TCCCGATGTGTGACCATTGT 59.310 50.000 0.00 0.00 0.00 2.71
4233 11070 0.804364 CCCGATGTGTGACCATTGTG 59.196 55.000 0.00 0.00 0.00 3.33
4234 11071 1.610363 CCCGATGTGTGACCATTGTGA 60.610 52.381 0.00 0.00 0.00 3.58
4235 11072 2.358957 CCGATGTGTGACCATTGTGAT 58.641 47.619 0.00 0.00 0.00 3.06
4236 11073 2.352651 CCGATGTGTGACCATTGTGATC 59.647 50.000 0.00 0.00 0.00 2.92
4237 11074 3.002102 CGATGTGTGACCATTGTGATCA 58.998 45.455 0.00 0.00 0.00 2.92
4238 11075 3.624410 CGATGTGTGACCATTGTGATCAT 59.376 43.478 0.00 0.00 0.00 2.45
4239 11076 4.260497 CGATGTGTGACCATTGTGATCATC 60.260 45.833 0.00 0.00 0.00 2.92
4240 11077 4.018484 TGTGTGACCATTGTGATCATCA 57.982 40.909 0.00 0.00 0.00 3.07
4257 11094 6.694877 ATCATCACTGTGATCAAATCCAAG 57.305 37.500 19.89 6.49 34.28 3.61
4258 11095 4.945543 TCATCACTGTGATCAAATCCAAGG 59.054 41.667 19.89 5.81 34.28 3.61
4259 11096 4.371624 TCACTGTGATCAAATCCAAGGT 57.628 40.909 6.36 0.00 0.00 3.50
4260 11097 4.074259 TCACTGTGATCAAATCCAAGGTG 58.926 43.478 6.36 0.00 0.00 4.00
4261 11098 3.822735 CACTGTGATCAAATCCAAGGTGT 59.177 43.478 0.32 0.00 0.00 4.16
4262 11099 4.074970 ACTGTGATCAAATCCAAGGTGTC 58.925 43.478 0.00 0.00 0.00 3.67
4263 11100 4.074259 CTGTGATCAAATCCAAGGTGTCA 58.926 43.478 0.00 0.00 0.00 3.58
4264 11101 3.820467 TGTGATCAAATCCAAGGTGTCAC 59.180 43.478 0.00 0.00 36.26 3.67
4265 11102 3.191371 GTGATCAAATCCAAGGTGTCACC 59.809 47.826 14.68 14.68 38.99 4.02
4266 11103 2.286365 TCAAATCCAAGGTGTCACCC 57.714 50.000 18.80 0.81 39.75 4.61
4267 11104 1.203001 TCAAATCCAAGGTGTCACCCC 60.203 52.381 18.80 0.00 39.75 4.95
4268 11105 0.856982 AAATCCAAGGTGTCACCCCA 59.143 50.000 18.80 0.31 39.75 4.96
4269 11106 0.112412 AATCCAAGGTGTCACCCCAC 59.888 55.000 18.80 0.00 39.75 4.61
4270 11107 0.772124 ATCCAAGGTGTCACCCCACT 60.772 55.000 18.80 0.00 39.75 4.00
4271 11108 1.228245 CCAAGGTGTCACCCCACTG 60.228 63.158 18.80 10.58 39.75 3.66
4272 11109 1.898574 CAAGGTGTCACCCCACTGC 60.899 63.158 18.80 0.00 39.75 4.40
4273 11110 3.133365 AAGGTGTCACCCCACTGCC 62.133 63.158 18.80 0.00 39.75 4.85
4274 11111 3.884774 GGTGTCACCCCACTGCCA 61.885 66.667 11.30 0.00 35.63 4.92
4275 11112 2.436109 GTGTCACCCCACTGCCAT 59.564 61.111 0.00 0.00 32.50 4.40
4276 11113 1.675641 GTGTCACCCCACTGCCATC 60.676 63.158 0.00 0.00 32.50 3.51
4277 11114 2.044946 GTCACCCCACTGCCATCC 60.045 66.667 0.00 0.00 0.00 3.51
4278 11115 2.531428 TCACCCCACTGCCATCCA 60.531 61.111 0.00 0.00 0.00 3.41
4279 11116 2.361610 CACCCCACTGCCATCCAC 60.362 66.667 0.00 0.00 0.00 4.02
4280 11117 3.661648 ACCCCACTGCCATCCACC 61.662 66.667 0.00 0.00 0.00 4.61
4281 11118 4.802051 CCCCACTGCCATCCACCG 62.802 72.222 0.00 0.00 0.00 4.94
4284 11121 4.758251 CACTGCCATCCACCGCGA 62.758 66.667 8.23 0.00 0.00 5.87
4285 11122 4.457496 ACTGCCATCCACCGCGAG 62.457 66.667 8.23 0.00 0.00 5.03
4286 11123 4.457496 CTGCCATCCACCGCGAGT 62.457 66.667 8.23 0.00 0.00 4.18
4287 11124 4.758251 TGCCATCCACCGCGAGTG 62.758 66.667 8.23 14.36 46.83 3.51
4290 11127 4.457496 CATCCACCGCGAGTGCCT 62.457 66.667 18.57 7.88 45.83 4.75
4291 11128 3.706373 ATCCACCGCGAGTGCCTT 61.706 61.111 18.57 6.04 45.83 4.35
4292 11129 3.254024 ATCCACCGCGAGTGCCTTT 62.254 57.895 18.57 4.08 45.83 3.11
4293 11130 3.423154 CCACCGCGAGTGCCTTTC 61.423 66.667 18.57 0.00 45.83 2.62
4294 11131 3.423154 CACCGCGAGTGCCTTTCC 61.423 66.667 8.23 0.00 40.28 3.13
4295 11132 4.699522 ACCGCGAGTGCCTTTCCC 62.700 66.667 8.23 0.00 38.08 3.97
4305 11142 2.747855 CCTTTCCCGGCAGCAGAC 60.748 66.667 0.00 0.00 0.00 3.51
4315 11152 4.463879 CAGCAGACGGGCAGGAGG 62.464 72.222 0.00 0.00 35.83 4.30
4316 11153 4.704103 AGCAGACGGGCAGGAGGA 62.704 66.667 0.00 0.00 35.83 3.71
4317 11154 3.474570 GCAGACGGGCAGGAGGAT 61.475 66.667 0.00 0.00 0.00 3.24
4318 11155 2.503061 CAGACGGGCAGGAGGATG 59.497 66.667 0.00 0.00 0.00 3.51
4319 11156 3.474570 AGACGGGCAGGAGGATGC 61.475 66.667 0.00 0.00 45.74 3.91
4325 11162 4.357699 GCAGGAGGATGCATCGAG 57.642 61.111 20.15 8.97 45.77 4.04
4326 11163 1.301558 GCAGGAGGATGCATCGAGG 60.302 63.158 20.15 8.98 45.77 4.63
4327 11164 1.752358 GCAGGAGGATGCATCGAGGA 61.752 60.000 20.15 0.00 45.77 3.71
4328 11165 0.317799 CAGGAGGATGCATCGAGGAG 59.682 60.000 20.15 6.64 0.00 3.69
4329 11166 0.187117 AGGAGGATGCATCGAGGAGA 59.813 55.000 20.15 0.00 0.00 3.71
4330 11167 0.602562 GGAGGATGCATCGAGGAGAG 59.397 60.000 20.15 0.00 0.00 3.20
4331 11168 0.602562 GAGGATGCATCGAGGAGAGG 59.397 60.000 20.15 0.00 0.00 3.69
4332 11169 0.831288 AGGATGCATCGAGGAGAGGG 60.831 60.000 20.15 0.00 0.00 4.30
4333 11170 1.118356 GGATGCATCGAGGAGAGGGT 61.118 60.000 20.15 0.00 0.00 4.34
4334 11171 0.033228 GATGCATCGAGGAGAGGGTG 59.967 60.000 11.68 0.00 0.00 4.61
4335 11172 0.689080 ATGCATCGAGGAGAGGGTGT 60.689 55.000 0.00 0.00 0.00 4.16
4336 11173 0.904865 TGCATCGAGGAGAGGGTGTT 60.905 55.000 0.00 0.00 0.00 3.32
4337 11174 0.460987 GCATCGAGGAGAGGGTGTTG 60.461 60.000 0.00 0.00 0.00 3.33
4338 11175 0.176680 CATCGAGGAGAGGGTGTTGG 59.823 60.000 0.00 0.00 0.00 3.77
4339 11176 0.041238 ATCGAGGAGAGGGTGTTGGA 59.959 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.539124 AGGAGGAGGGAAAGCGGTT 60.539 57.895 0.00 0.00 0.00 4.44
1 2 1.990614 GAGGAGGAGGGAAAGCGGT 60.991 63.158 0.00 0.00 0.00 5.68
2 3 2.736826 GGAGGAGGAGGGAAAGCGG 61.737 68.421 0.00 0.00 0.00 5.52
3 4 2.904131 GGAGGAGGAGGGAAAGCG 59.096 66.667 0.00 0.00 0.00 4.68
4 5 2.904131 CGGAGGAGGAGGGAAAGC 59.096 66.667 0.00 0.00 0.00 3.51
68 70 4.589046 GAGGAGATCCAGCCGAGA 57.411 61.111 0.92 0.00 38.89 4.04
204 207 0.906756 CCTCCTTCCTCTCTGCACCA 60.907 60.000 0.00 0.00 0.00 4.17
299 302 1.666553 GGTGTGAACGTCGCATGGA 60.667 57.895 0.00 0.00 39.28 3.41
424 456 0.044244 ATATGGGGAGGATACGGGGG 59.956 60.000 0.00 0.00 46.39 5.40
425 457 1.966845 AATATGGGGAGGATACGGGG 58.033 55.000 0.00 0.00 46.39 5.73
426 458 2.642807 ACAAATATGGGGAGGATACGGG 59.357 50.000 0.00 0.00 46.39 5.28
427 459 3.072476 ACACAAATATGGGGAGGATACGG 59.928 47.826 0.00 0.00 36.18 4.02
428 460 4.351874 ACACAAATATGGGGAGGATACG 57.648 45.455 0.00 0.00 36.18 3.06
429 461 7.074653 TCTAACACAAATATGGGGAGGATAC 57.925 40.000 0.00 0.00 32.76 2.24
435 467 8.611257 CCCTAATATCTAACACAAATATGGGGA 58.389 37.037 0.00 0.00 34.50 4.81
447 479 5.719563 TGATCGGCATCCCTAATATCTAACA 59.280 40.000 0.00 0.00 0.00 2.41
619 654 7.671302 TCACCAAGTATCTTCTATATTGCTCC 58.329 38.462 0.00 0.00 0.00 4.70
670 737 1.300233 CGCCGCTAGGTGGAAGATC 60.300 63.158 0.93 0.00 44.11 2.75
671 738 2.815308 CGCCGCTAGGTGGAAGAT 59.185 61.111 0.93 0.00 44.11 2.40
688 755 3.718210 GAGGTCGACGATGGCACCC 62.718 68.421 9.92 0.00 0.00 4.61
689 756 2.202756 GAGGTCGACGATGGCACC 60.203 66.667 9.92 0.00 0.00 5.01
690 757 0.872021 GATGAGGTCGACGATGGCAC 60.872 60.000 9.92 0.00 0.00 5.01
691 758 1.037579 AGATGAGGTCGACGATGGCA 61.038 55.000 9.92 3.32 0.00 4.92
692 759 0.596083 CAGATGAGGTCGACGATGGC 60.596 60.000 9.92 0.00 0.00 4.40
693 760 0.031314 CCAGATGAGGTCGACGATGG 59.969 60.000 9.92 7.14 0.00 3.51
694 761 0.741326 ACCAGATGAGGTCGACGATG 59.259 55.000 9.92 1.76 37.28 3.84
792 859 5.939883 TCTTTCCACTTGTATTGTGATCTGG 59.060 40.000 0.00 0.00 37.60 3.86
793 860 6.402983 GCTCTTTCCACTTGTATTGTGATCTG 60.403 42.308 0.00 0.00 37.60 2.90
794 861 5.645497 GCTCTTTCCACTTGTATTGTGATCT 59.355 40.000 0.00 0.00 37.60 2.75
795 862 5.163713 GGCTCTTTCCACTTGTATTGTGATC 60.164 44.000 0.00 0.00 37.60 2.92
796 863 4.702131 GGCTCTTTCCACTTGTATTGTGAT 59.298 41.667 0.00 0.00 37.60 3.06
797 864 4.072131 GGCTCTTTCCACTTGTATTGTGA 58.928 43.478 0.00 0.00 37.60 3.58
818 885 7.669089 ATAAGGAGAGAGGAAGAAAACTAGG 57.331 40.000 0.00 0.00 0.00 3.02
938 4272 4.789784 CCGAAATACTAGCTAGAGACAGC 58.210 47.826 27.45 10.27 42.12 4.40
979 4313 2.107141 CACCCGGCAGCTAGCTAC 59.893 66.667 18.86 12.37 44.79 3.58
1059 4393 3.090219 GCCGCTCGGAGTTGGGTAT 62.090 63.158 13.11 0.00 37.50 2.73
1210 4544 3.083122 AGATTCACAGCAGCTTTGGAT 57.917 42.857 8.73 5.32 0.00 3.41
1211 4545 2.574006 AGATTCACAGCAGCTTTGGA 57.426 45.000 8.73 0.00 0.00 3.53
1222 4556 3.420893 GTCATGGACCCAAAGATTCACA 58.579 45.455 0.00 0.00 0.00 3.58
1456 4801 4.628963 TGAAGTAAAACCCAGGTAGACC 57.371 45.455 0.00 0.00 0.00 3.85
1515 4860 3.828875 AAGAGAAGTACTATGCTGCCC 57.171 47.619 0.00 0.00 0.00 5.36
1530 4875 3.576982 ACGTGGACCATTGACTAAAGAGA 59.423 43.478 0.00 0.00 0.00 3.10
1539 4884 4.452825 TGAAGTAAAACGTGGACCATTGA 58.547 39.130 0.00 0.00 0.00 2.57
1540 4885 4.822036 TGAAGTAAAACGTGGACCATTG 57.178 40.909 0.00 0.00 0.00 2.82
1541 4886 7.513371 TTTATGAAGTAAAACGTGGACCATT 57.487 32.000 0.00 0.00 29.52 3.16
1542 4887 7.392113 TGATTTATGAAGTAAAACGTGGACCAT 59.608 33.333 0.00 0.00 35.98 3.55
1543 4888 6.711194 TGATTTATGAAGTAAAACGTGGACCA 59.289 34.615 0.00 0.00 35.98 4.02
1544 4889 7.136289 TGATTTATGAAGTAAAACGTGGACC 57.864 36.000 0.00 0.00 35.98 4.46
1545 4890 8.234546 ACATGATTTATGAAGTAAAACGTGGAC 58.765 33.333 0.00 0.00 42.12 4.02
1546 4891 8.233868 CACATGATTTATGAAGTAAAACGTGGA 58.766 33.333 0.00 0.00 42.12 4.02
1547 4892 7.484641 CCACATGATTTATGAAGTAAAACGTGG 59.515 37.037 0.00 0.00 42.12 4.94
1548 4893 8.233868 TCCACATGATTTATGAAGTAAAACGTG 58.766 33.333 0.00 7.86 42.84 4.49
1549 4894 8.330466 TCCACATGATTTATGAAGTAAAACGT 57.670 30.769 0.00 0.00 39.21 3.99
1550 4895 9.787532 AATCCACATGATTTATGAAGTAAAACG 57.212 29.630 0.00 0.00 40.92 3.60
1695 5090 7.967890 AAGTCAAATCATGCACGATCATATA 57.032 32.000 0.00 0.00 0.00 0.86
1701 5096 4.022068 ACCAAAAGTCAAATCATGCACGAT 60.022 37.500 0.00 0.00 0.00 3.73
1726 5122 6.851609 TCACATCCGAAATGTATTTTCTTGG 58.148 36.000 3.50 0.00 41.37 3.61
1727 5123 8.800972 CATTCACATCCGAAATGTATTTTCTTG 58.199 33.333 3.50 0.00 41.37 3.02
1778 5174 5.232463 TGAAACGAAATAGGTAAAGACGCT 58.768 37.500 0.00 0.00 0.00 5.07
1929 5325 9.934190 GCTCTAGGTAGCGAACTTATATAATAC 57.066 37.037 0.00 0.00 31.76 1.89
1956 5352 4.219288 CCAAAATTTCTCTGCCAAGCTAGT 59.781 41.667 0.00 0.00 0.00 2.57
2052 5449 0.890683 CCTTGTCATTTCCCAGCACC 59.109 55.000 0.00 0.00 0.00 5.01
2094 5492 9.760660 GGATACATGTAGCGAATGAATAAATTC 57.239 33.333 14.56 0.00 37.31 2.17
2097 5495 8.773645 CAAGGATACATGTAGCGAATGAATAAA 58.226 33.333 14.56 0.00 41.41 1.40
2100 5498 6.791887 CAAGGATACATGTAGCGAATGAAT 57.208 37.500 14.56 0.00 41.41 2.57
2141 5554 5.071788 TCCATCCTACAGTTGTTTCAGAAGT 59.928 40.000 0.00 0.00 0.00 3.01
2152 5565 2.472029 CACCTCCTCCATCCTACAGTT 58.528 52.381 0.00 0.00 0.00 3.16
2156 5569 0.691078 TGGCACCTCCTCCATCCTAC 60.691 60.000 0.00 0.00 35.26 3.18
2157 5570 0.044092 TTGGCACCTCCTCCATCCTA 59.956 55.000 0.00 0.00 35.26 2.94
2234 5647 0.251354 TTCTGGAGAGCAGGCACATC 59.749 55.000 0.00 0.00 0.00 3.06
2263 5676 1.107114 GCCGTCTGATTCTCCTCTGA 58.893 55.000 0.00 0.00 0.00 3.27
2297 5710 1.070289 GTGTCAGGGAGAAAGGAACGT 59.930 52.381 0.00 0.00 0.00 3.99
2310 5723 1.139734 CAGATCCCGACGTGTCAGG 59.860 63.158 0.00 0.00 0.00 3.86
2402 5815 4.256920 ACTGATCTGCTCACCATACAAAC 58.743 43.478 0.00 0.00 0.00 2.93
2418 5831 3.390135 TGTTCGTGGAGTTGAACTGATC 58.610 45.455 0.90 0.00 43.73 2.92
2419 5832 3.469008 TGTTCGTGGAGTTGAACTGAT 57.531 42.857 0.90 0.00 43.73 2.90
2422 5835 1.873591 GCATGTTCGTGGAGTTGAACT 59.126 47.619 0.00 0.00 43.73 3.01
2423 5836 1.873591 AGCATGTTCGTGGAGTTGAAC 59.126 47.619 0.00 0.00 43.67 3.18
2426 5839 1.394917 GCTAGCATGTTCGTGGAGTTG 59.605 52.381 10.63 0.00 0.00 3.16
2427 5840 1.001974 TGCTAGCATGTTCGTGGAGTT 59.998 47.619 14.93 0.00 0.00 3.01
2428 5841 0.608130 TGCTAGCATGTTCGTGGAGT 59.392 50.000 14.93 0.00 0.00 3.85
2429 5842 1.863454 GATGCTAGCATGTTCGTGGAG 59.137 52.381 34.16 0.00 36.70 3.86
2431 5844 1.863454 GAGATGCTAGCATGTTCGTGG 59.137 52.381 34.16 0.00 36.70 4.94
2433 5846 1.135139 ACGAGATGCTAGCATGTTCGT 59.865 47.619 36.72 36.72 42.80 3.85
2434 5847 1.845266 ACGAGATGCTAGCATGTTCG 58.155 50.000 35.83 35.83 41.62 3.95
2435 5848 3.242543 CCAAACGAGATGCTAGCATGTTC 60.243 47.826 34.16 26.29 36.70 3.18
2437 5850 2.283298 CCAAACGAGATGCTAGCATGT 58.717 47.619 34.16 30.04 36.70 3.21
2438 5851 1.600957 CCCAAACGAGATGCTAGCATG 59.399 52.381 34.16 21.60 36.70 4.06
2439 5852 1.210478 ACCCAAACGAGATGCTAGCAT 59.790 47.619 29.97 29.97 39.69 3.79
2440 5853 0.613260 ACCCAAACGAGATGCTAGCA 59.387 50.000 21.85 21.85 0.00 3.49
2442 5855 4.322080 TCATACCCAAACGAGATGCTAG 57.678 45.455 0.00 0.00 0.00 3.42
2443 5856 4.343814 TGATCATACCCAAACGAGATGCTA 59.656 41.667 0.00 0.00 0.00 3.49
2444 5857 3.134623 TGATCATACCCAAACGAGATGCT 59.865 43.478 0.00 0.00 0.00 3.79
2445 5858 3.466836 TGATCATACCCAAACGAGATGC 58.533 45.455 0.00 0.00 0.00 3.91
2446 5859 4.948847 TCTGATCATACCCAAACGAGATG 58.051 43.478 0.00 0.00 0.00 2.90
2447 5860 5.565637 CGATCTGATCATACCCAAACGAGAT 60.566 44.000 17.19 0.00 0.00 2.75
2448 5861 4.261614 CGATCTGATCATACCCAAACGAGA 60.262 45.833 17.19 0.00 0.00 4.04
2449 5862 3.983988 CGATCTGATCATACCCAAACGAG 59.016 47.826 17.19 0.00 0.00 4.18
2450 5863 3.634910 TCGATCTGATCATACCCAAACGA 59.365 43.478 17.19 3.00 0.00 3.85
2451 5864 3.977427 TCGATCTGATCATACCCAAACG 58.023 45.455 17.19 0.68 0.00 3.60
2452 5865 3.743396 GCTCGATCTGATCATACCCAAAC 59.257 47.826 17.19 0.00 0.00 2.93
2453 5866 3.387699 TGCTCGATCTGATCATACCCAAA 59.612 43.478 17.19 0.00 0.00 3.28
2454 5867 2.965147 TGCTCGATCTGATCATACCCAA 59.035 45.455 17.19 0.00 0.00 4.12
2455 5868 2.297315 GTGCTCGATCTGATCATACCCA 59.703 50.000 17.19 4.40 0.00 4.51
2471 5884 8.915871 AACATTGTTCATAACATATTGTGCTC 57.084 30.769 0.00 0.00 41.79 4.26
2508 5921 2.675658 AAACACAGCCCTGGTTACAT 57.324 45.000 0.00 0.00 34.19 2.29
2527 5940 0.963962 GGGTCACGACACTCTTGGTA 59.036 55.000 0.00 0.00 0.00 3.25
2631 6044 5.598416 TTGTCAGTTGAGATACATCGGAT 57.402 39.130 0.00 0.00 0.00 4.18
2638 6051 7.066284 AGCATGGTTTATTGTCAGTTGAGATAC 59.934 37.037 0.00 0.00 0.00 2.24
2647 6060 6.148948 TCGAAAAAGCATGGTTTATTGTCAG 58.851 36.000 22.26 12.90 0.00 3.51
2656 6069 2.863809 AGACCTCGAAAAAGCATGGTT 58.136 42.857 3.82 3.82 0.00 3.67
2706 6121 0.596083 CCAGCGAGCTCTGTAATCCG 60.596 60.000 12.85 0.00 32.32 4.18
2835 6250 8.528044 ACAATTAAAAACCTCTGGTGTAAGAA 57.472 30.769 0.00 0.00 35.34 2.52
2836 6251 8.528044 AACAATTAAAAACCTCTGGTGTAAGA 57.472 30.769 0.00 0.00 35.34 2.10
2837 6252 9.244799 GAAACAATTAAAAACCTCTGGTGTAAG 57.755 33.333 0.00 0.00 35.34 2.34
2879 6297 0.815734 AGCAATGCCAGATGACAAGC 59.184 50.000 0.00 0.00 0.00 4.01
2880 6298 1.816835 ACAGCAATGCCAGATGACAAG 59.183 47.619 0.00 0.00 0.00 3.16
2887 6305 0.038599 ATGACCACAGCAATGCCAGA 59.961 50.000 0.00 0.00 0.00 3.86
2891 6309 3.441163 CACATTATGACCACAGCAATGC 58.559 45.455 0.00 0.00 36.60 3.56
2912 6330 2.029623 AGATTCCAGGAACATGCATGC 58.970 47.619 26.53 11.82 0.00 4.06
3129 6551 3.469629 GCACGCACGCATTACATATTAG 58.530 45.455 0.00 0.00 0.00 1.73
3282 10093 2.034221 AGGAACAGGAAAGCCGCC 59.966 61.111 0.00 0.00 39.96 6.13
3365 10176 2.894126 CTCCTCCACGCCTATGATACTT 59.106 50.000 0.00 0.00 0.00 2.24
3380 10198 5.362430 ACATCTCTATCTGTTTGTCTCCTCC 59.638 44.000 0.00 0.00 0.00 4.30
3408 10226 7.074653 TCCAAAAACTACACATTCTCCTAGT 57.925 36.000 0.00 0.00 0.00 2.57
3409 10227 7.979444 TTCCAAAAACTACACATTCTCCTAG 57.021 36.000 0.00 0.00 0.00 3.02
3410 10228 8.754991 TTTTCCAAAAACTACACATTCTCCTA 57.245 30.769 0.00 0.00 0.00 2.94
3447 10266 5.335191 CCCTTTGTCGAGAAAGATCAAAAGG 60.335 44.000 30.51 19.15 35.30 3.11
3494 10313 9.988815 ATTATGTTAGTATCTTTTCGATGCTCT 57.011 29.630 0.00 0.00 43.00 4.09
3512 10331 6.578944 AGAGGTGTGCATCGTAATTATGTTA 58.421 36.000 4.63 0.00 0.00 2.41
3607 10441 3.499338 TCTGATTGCTTTGGGTGTTCAT 58.501 40.909 0.00 0.00 0.00 2.57
3608 10442 2.942804 TCTGATTGCTTTGGGTGTTCA 58.057 42.857 0.00 0.00 0.00 3.18
3638 10473 8.916654 CAGATATGATCATTGTCGTAGTTTACC 58.083 37.037 14.65 0.00 0.00 2.85
3648 10483 8.040716 TGATTGATGCAGATATGATCATTGTC 57.959 34.615 14.65 12.42 0.00 3.18
3663 10499 5.373222 TGATGTCATGAGATGATTGATGCA 58.627 37.500 10.56 0.00 42.04 3.96
3672 10508 3.916776 CGTCCGTATGATGTCATGAGATG 59.083 47.826 10.56 0.00 37.15 2.90
3684 10520 2.543012 GAGAATCTCGTCGTCCGTATGA 59.457 50.000 0.00 0.00 37.94 2.15
3705 10541 1.213537 CCGAAGGCATTGCTGTTGG 59.786 57.895 8.82 6.33 46.14 3.77
3722 10558 2.506472 GAGCGTCATTCCCTCCCC 59.494 66.667 0.00 0.00 0.00 4.81
3725 10561 1.590259 GCTCGAGCGTCATTCCCTC 60.590 63.158 23.61 0.00 0.00 4.30
3746 10582 0.251916 GGTTGGATCCGGTGATGACA 59.748 55.000 7.39 0.00 0.00 3.58
3750 10586 1.345715 GGGAGGTTGGATCCGGTGAT 61.346 60.000 7.39 0.00 37.75 3.06
3881 10717 4.382147 GGGGTGAAAGACTAGATCTGACAC 60.382 50.000 5.18 9.36 40.55 3.67
3882 10718 3.769844 GGGGTGAAAGACTAGATCTGACA 59.230 47.826 5.18 0.00 37.88 3.58
3885 10721 3.024547 TCGGGGTGAAAGACTAGATCTG 58.975 50.000 5.18 0.00 37.88 2.90
3889 10725 2.885616 ACTTCGGGGTGAAAGACTAGA 58.114 47.619 0.00 0.00 35.79 2.43
3894 10730 1.000506 CTCGAACTTCGGGGTGAAAGA 59.999 52.381 11.21 0.00 40.88 2.52
3895 10731 1.000506 TCTCGAACTTCGGGGTGAAAG 59.999 52.381 11.15 0.00 41.53 2.62
3906 10742 4.683432 GCACCTGCTCTCGAACTT 57.317 55.556 0.00 0.00 38.21 2.66
3928 10764 0.801067 GACGTCGATGGTGGTGCTAC 60.801 60.000 9.90 0.00 0.00 3.58
3941 10777 2.331809 TCAACACATGAGAGACGTCG 57.668 50.000 10.46 0.00 33.04 5.12
3942 10778 2.346847 GCATCAACACATGAGAGACGTC 59.653 50.000 7.70 7.70 42.53 4.34
3944 10780 1.662629 GGCATCAACACATGAGAGACG 59.337 52.381 0.00 0.00 42.53 4.18
3946 10782 2.616256 GGTGGCATCAACACATGAGAGA 60.616 50.000 0.00 0.00 42.53 3.10
3948 10784 1.073603 TGGTGGCATCAACACATGAGA 59.926 47.619 0.00 0.00 42.53 3.27
3950 10786 3.741707 TGGTGGCATCAACACATGA 57.258 47.368 0.00 0.00 43.67 3.07
3960 10796 0.179004 TCACGGAAAAGTGGTGGCAT 60.179 50.000 0.00 0.00 42.10 4.40
3961 10797 0.179004 ATCACGGAAAAGTGGTGGCA 60.179 50.000 0.00 0.00 42.10 4.92
3977 10813 2.027653 TCGCATGTAACTGTTGGGATCA 60.028 45.455 2.69 0.00 0.00 2.92
3978 10814 2.627945 TCGCATGTAACTGTTGGGATC 58.372 47.619 2.69 0.00 0.00 3.36
3983 10819 3.058983 ACACACATCGCATGTAACTGTTG 60.059 43.478 2.69 0.00 42.70 3.33
4036 10872 4.250464 TGTAAACTAGAATGACGGCTTGG 58.750 43.478 0.00 0.00 0.00 3.61
4056 10893 6.465084 GTGGTTGACTTTAGTAGGAAGATGT 58.535 40.000 0.00 0.00 0.00 3.06
4062 10899 2.564062 CCGGTGGTTGACTTTAGTAGGA 59.436 50.000 0.00 0.00 0.00 2.94
4063 10900 2.564062 TCCGGTGGTTGACTTTAGTAGG 59.436 50.000 0.00 0.00 0.00 3.18
4065 10902 4.091549 AGATCCGGTGGTTGACTTTAGTA 58.908 43.478 0.00 0.00 0.00 1.82
4068 10905 4.346730 TCTAGATCCGGTGGTTGACTTTA 58.653 43.478 0.00 0.00 0.00 1.85
4072 10909 3.194968 TCTTTCTAGATCCGGTGGTTGAC 59.805 47.826 0.00 0.00 0.00 3.18
4082 10919 6.128254 CGTTGAGGGTTTTTCTTTCTAGATCC 60.128 42.308 0.00 0.00 0.00 3.36
4088 10925 4.777463 TCTCGTTGAGGGTTTTTCTTTCT 58.223 39.130 0.00 0.00 0.00 2.52
4089 10926 5.470437 AGATCTCGTTGAGGGTTTTTCTTTC 59.530 40.000 0.00 0.00 0.00 2.62
4091 10928 4.974399 AGATCTCGTTGAGGGTTTTTCTT 58.026 39.130 0.00 0.00 0.00 2.52
4092 10929 4.625607 AGATCTCGTTGAGGGTTTTTCT 57.374 40.909 0.00 0.00 0.00 2.52
4095 10932 4.714632 TGAAAGATCTCGTTGAGGGTTTT 58.285 39.130 0.00 0.00 0.00 2.43
4096 10933 4.351874 TGAAAGATCTCGTTGAGGGTTT 57.648 40.909 0.00 0.00 0.00 3.27
4105 10942 2.359900 GTGGCCATTGAAAGATCTCGT 58.640 47.619 9.72 0.00 0.00 4.18
4106 10943 1.672881 GGTGGCCATTGAAAGATCTCG 59.327 52.381 9.72 0.00 0.00 4.04
4107 10944 1.672881 CGGTGGCCATTGAAAGATCTC 59.327 52.381 9.72 0.00 0.00 2.75
4111 10948 2.331893 CGCGGTGGCCATTGAAAGA 61.332 57.895 9.72 0.00 35.02 2.52
4141 10978 0.109597 CAATCAGAAGGCACAACGGC 60.110 55.000 0.00 0.00 41.61 5.68
4142 10979 0.523072 CCAATCAGAAGGCACAACGG 59.477 55.000 0.00 0.00 0.00 4.44
4143 10980 1.522668 TCCAATCAGAAGGCACAACG 58.477 50.000 0.00 0.00 0.00 4.10
4144 10981 2.352127 GCTTCCAATCAGAAGGCACAAC 60.352 50.000 3.67 0.00 42.94 3.32
4145 10982 1.888512 GCTTCCAATCAGAAGGCACAA 59.111 47.619 3.67 0.00 42.94 3.33
4146 10983 1.538047 GCTTCCAATCAGAAGGCACA 58.462 50.000 3.67 0.00 42.94 4.57
4150 10987 1.815003 GTGTGGCTTCCAATCAGAAGG 59.185 52.381 3.67 0.00 42.94 3.46
4151 10988 2.507484 TGTGTGGCTTCCAATCAGAAG 58.493 47.619 0.00 0.00 45.05 2.85
4152 10989 2.655090 TGTGTGGCTTCCAATCAGAA 57.345 45.000 0.00 0.00 34.18 3.02
4153 10990 2.885135 ATGTGTGGCTTCCAATCAGA 57.115 45.000 0.00 0.00 34.18 3.27
4154 10991 2.947652 CCTATGTGTGGCTTCCAATCAG 59.052 50.000 0.00 0.00 34.18 2.90
4155 10992 2.945440 GCCTATGTGTGGCTTCCAATCA 60.945 50.000 0.00 0.00 46.38 2.57
4156 10993 1.678101 GCCTATGTGTGGCTTCCAATC 59.322 52.381 0.00 0.00 46.38 2.67
4157 10994 1.767759 GCCTATGTGTGGCTTCCAAT 58.232 50.000 0.00 0.00 46.38 3.16
4158 10995 3.264574 GCCTATGTGTGGCTTCCAA 57.735 52.632 0.00 0.00 46.38 3.53
4164 11001 1.983119 TAGGCAGGCCTATGTGTGGC 61.983 60.000 15.86 5.18 46.14 5.01
4165 11002 2.220953 TAGGCAGGCCTATGTGTGG 58.779 57.895 15.86 0.00 46.14 4.17
4185 11022 1.154035 GGAGGTTTTGCCGAATGCG 60.154 57.895 0.00 0.00 45.60 4.73
4186 11023 0.603065 AAGGAGGTTTTGCCGAATGC 59.397 50.000 0.00 0.00 43.70 3.56
4187 11024 1.135689 CGAAGGAGGTTTTGCCGAATG 60.136 52.381 0.00 0.00 43.70 2.67
4188 11025 1.165270 CGAAGGAGGTTTTGCCGAAT 58.835 50.000 0.00 0.00 43.70 3.34
4189 11026 0.107081 TCGAAGGAGGTTTTGCCGAA 59.893 50.000 0.00 0.00 43.70 4.30
4190 11027 0.323629 ATCGAAGGAGGTTTTGCCGA 59.676 50.000 0.00 0.00 43.70 5.54
4191 11028 0.447801 CATCGAAGGAGGTTTTGCCG 59.552 55.000 0.00 0.00 43.70 5.69
4192 11029 0.171231 GCATCGAAGGAGGTTTTGCC 59.829 55.000 0.00 0.00 37.58 4.52
4193 11030 0.171231 GGCATCGAAGGAGGTTTTGC 59.829 55.000 0.00 0.00 0.00 3.68
4194 11031 1.740025 GAGGCATCGAAGGAGGTTTTG 59.260 52.381 0.00 0.00 0.00 2.44
4195 11032 1.340114 GGAGGCATCGAAGGAGGTTTT 60.340 52.381 0.00 0.00 0.00 2.43
4196 11033 0.253327 GGAGGCATCGAAGGAGGTTT 59.747 55.000 0.00 0.00 0.00 3.27
4197 11034 1.627297 GGGAGGCATCGAAGGAGGTT 61.627 60.000 0.00 0.00 0.00 3.50
4198 11035 2.066999 GGGAGGCATCGAAGGAGGT 61.067 63.158 0.00 0.00 0.00 3.85
4199 11036 2.825264 GGGAGGCATCGAAGGAGG 59.175 66.667 0.00 0.00 0.00 4.30
4200 11037 1.467678 ATCGGGAGGCATCGAAGGAG 61.468 60.000 0.00 0.00 38.92 3.69
4201 11038 1.457643 ATCGGGAGGCATCGAAGGA 60.458 57.895 0.00 0.00 38.92 3.36
4202 11039 1.301244 CATCGGGAGGCATCGAAGG 60.301 63.158 0.00 0.00 38.92 3.46
4203 11040 0.877649 CACATCGGGAGGCATCGAAG 60.878 60.000 0.00 0.00 38.92 3.79
4204 11041 1.143838 CACATCGGGAGGCATCGAA 59.856 57.895 0.00 0.00 38.92 3.71
4205 11042 2.058001 ACACATCGGGAGGCATCGA 61.058 57.895 0.00 0.00 39.79 3.59
4206 11043 1.884464 CACACATCGGGAGGCATCG 60.884 63.158 0.00 0.00 0.00 3.84
4207 11044 0.811616 GTCACACATCGGGAGGCATC 60.812 60.000 0.00 0.00 0.00 3.91
4208 11045 1.221840 GTCACACATCGGGAGGCAT 59.778 57.895 0.00 0.00 0.00 4.40
4209 11046 2.662596 GTCACACATCGGGAGGCA 59.337 61.111 0.00 0.00 0.00 4.75
4210 11047 2.125106 GGTCACACATCGGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
4211 11048 0.253044 AATGGTCACACATCGGGAGG 59.747 55.000 0.00 0.00 0.00 4.30
4212 11049 1.339055 ACAATGGTCACACATCGGGAG 60.339 52.381 0.00 0.00 0.00 4.30
4213 11050 0.690192 ACAATGGTCACACATCGGGA 59.310 50.000 0.00 0.00 0.00 5.14
4214 11051 0.804364 CACAATGGTCACACATCGGG 59.196 55.000 0.00 0.00 0.00 5.14
4215 11052 1.807139 TCACAATGGTCACACATCGG 58.193 50.000 0.00 0.00 0.00 4.18
4216 11053 3.002102 TGATCACAATGGTCACACATCG 58.998 45.455 0.00 0.00 31.53 3.84
4217 11054 4.637091 TGATGATCACAATGGTCACACATC 59.363 41.667 0.00 0.00 40.78 3.06
4218 11055 4.397103 GTGATGATCACAATGGTCACACAT 59.603 41.667 19.96 0.00 46.22 3.21
4219 11056 3.752747 GTGATGATCACAATGGTCACACA 59.247 43.478 19.96 7.74 46.22 3.72
4220 11057 4.346734 GTGATGATCACAATGGTCACAC 57.653 45.455 19.96 2.29 46.22 3.82
4234 11071 5.593095 CCTTGGATTTGATCACAGTGATGAT 59.407 40.000 21.26 11.34 42.15 2.45
4235 11072 4.945543 CCTTGGATTTGATCACAGTGATGA 59.054 41.667 21.26 9.97 37.20 2.92
4236 11073 4.703575 ACCTTGGATTTGATCACAGTGATG 59.296 41.667 21.26 4.85 37.20 3.07
4237 11074 4.703575 CACCTTGGATTTGATCACAGTGAT 59.296 41.667 16.37 16.37 40.34 3.06
4238 11075 4.074259 CACCTTGGATTTGATCACAGTGA 58.926 43.478 5.50 5.50 0.00 3.41
4239 11076 3.822735 ACACCTTGGATTTGATCACAGTG 59.177 43.478 0.00 0.00 0.00 3.66
4240 11077 4.074970 GACACCTTGGATTTGATCACAGT 58.925 43.478 0.00 0.00 0.00 3.55
4241 11078 4.074259 TGACACCTTGGATTTGATCACAG 58.926 43.478 0.00 0.00 0.00 3.66
4242 11079 3.820467 GTGACACCTTGGATTTGATCACA 59.180 43.478 0.00 0.00 36.18 3.58
4243 11080 3.191371 GGTGACACCTTGGATTTGATCAC 59.809 47.826 17.84 0.00 34.73 3.06
4244 11081 3.420893 GGTGACACCTTGGATTTGATCA 58.579 45.455 17.84 0.00 34.73 2.92
4245 11082 2.755103 GGGTGACACCTTGGATTTGATC 59.245 50.000 23.72 0.00 38.64 2.92
4246 11083 2.557452 GGGGTGACACCTTGGATTTGAT 60.557 50.000 23.72 0.00 38.64 2.57
4247 11084 1.203001 GGGGTGACACCTTGGATTTGA 60.203 52.381 23.72 0.00 38.64 2.69
4248 11085 1.256812 GGGGTGACACCTTGGATTTG 58.743 55.000 23.72 0.00 38.64 2.32
4249 11086 0.856982 TGGGGTGACACCTTGGATTT 59.143 50.000 23.72 0.00 38.64 2.17
4250 11087 0.112412 GTGGGGTGACACCTTGGATT 59.888 55.000 23.72 0.00 38.64 3.01
4251 11088 0.772124 AGTGGGGTGACACCTTGGAT 60.772 55.000 23.72 4.51 42.28 3.41
4252 11089 1.385347 AGTGGGGTGACACCTTGGA 60.385 57.895 23.72 3.20 42.28 3.53
4253 11090 1.228245 CAGTGGGGTGACACCTTGG 60.228 63.158 23.72 6.29 42.28 3.61
4254 11091 1.898574 GCAGTGGGGTGACACCTTG 60.899 63.158 23.72 16.71 42.28 3.61
4255 11092 2.515901 GCAGTGGGGTGACACCTT 59.484 61.111 23.72 5.25 42.28 3.50
4256 11093 3.570212 GGCAGTGGGGTGACACCT 61.570 66.667 23.72 1.03 42.28 4.00
4257 11094 3.210012 ATGGCAGTGGGGTGACACC 62.210 63.158 16.86 16.86 38.65 4.16
4258 11095 1.675641 GATGGCAGTGGGGTGACAC 60.676 63.158 0.00 0.00 38.65 3.67
4259 11096 2.756400 GATGGCAGTGGGGTGACA 59.244 61.111 0.00 0.00 40.69 3.58
4260 11097 2.044946 GGATGGCAGTGGGGTGAC 60.045 66.667 0.00 0.00 0.00 3.67
4261 11098 2.531428 TGGATGGCAGTGGGGTGA 60.531 61.111 0.00 0.00 0.00 4.02
4262 11099 2.361610 GTGGATGGCAGTGGGGTG 60.362 66.667 0.00 0.00 0.00 4.61
4263 11100 3.661648 GGTGGATGGCAGTGGGGT 61.662 66.667 0.00 0.00 0.00 4.95
4264 11101 4.802051 CGGTGGATGGCAGTGGGG 62.802 72.222 0.00 0.00 0.00 4.96
4267 11104 4.758251 TCGCGGTGGATGGCAGTG 62.758 66.667 6.13 0.00 0.00 3.66
4268 11105 4.457496 CTCGCGGTGGATGGCAGT 62.457 66.667 6.13 0.00 0.00 4.40
4269 11106 4.457496 ACTCGCGGTGGATGGCAG 62.457 66.667 6.13 0.00 0.00 4.85
4270 11107 4.758251 CACTCGCGGTGGATGGCA 62.758 66.667 16.84 0.00 41.90 4.92
4273 11110 3.958147 AAGGCACTCGCGGTGGATG 62.958 63.158 23.09 9.82 45.44 3.51
4274 11111 3.254024 AAAGGCACTCGCGGTGGAT 62.254 57.895 23.09 0.00 45.44 3.41
4275 11112 3.876589 GAAAGGCACTCGCGGTGGA 62.877 63.158 23.09 0.00 45.44 4.02
4276 11113 3.423154 GAAAGGCACTCGCGGTGG 61.423 66.667 23.09 10.52 45.44 4.61
4278 11115 4.699522 GGGAAAGGCACTCGCGGT 62.700 66.667 6.13 0.00 38.49 5.68
4288 11125 2.747855 GTCTGCTGCCGGGAAAGG 60.748 66.667 2.18 0.00 0.00 3.11
4289 11126 3.121030 CGTCTGCTGCCGGGAAAG 61.121 66.667 2.18 0.43 0.00 2.62
4290 11127 4.697756 CCGTCTGCTGCCGGGAAA 62.698 66.667 5.03 0.00 40.54 3.13
4298 11135 4.463879 CCTCCTGCCCGTCTGCTG 62.464 72.222 0.00 0.00 0.00 4.41
4299 11136 3.991924 ATCCTCCTGCCCGTCTGCT 62.992 63.158 0.00 0.00 0.00 4.24
4300 11137 3.474570 ATCCTCCTGCCCGTCTGC 61.475 66.667 0.00 0.00 0.00 4.26
4301 11138 2.503061 CATCCTCCTGCCCGTCTG 59.497 66.667 0.00 0.00 0.00 3.51
4302 11139 3.474570 GCATCCTCCTGCCCGTCT 61.475 66.667 0.00 0.00 36.10 4.18
4303 11140 3.112205 ATGCATCCTCCTGCCCGTC 62.112 63.158 0.00 0.00 41.58 4.79
4304 11141 3.092511 ATGCATCCTCCTGCCCGT 61.093 61.111 0.00 0.00 41.58 5.28
4305 11142 2.281345 GATGCATCCTCCTGCCCG 60.281 66.667 16.23 0.00 41.58 6.13
4306 11143 2.281345 CGATGCATCCTCCTGCCC 60.281 66.667 20.87 0.00 41.58 5.36
4307 11144 1.301558 CTCGATGCATCCTCCTGCC 60.302 63.158 20.87 0.00 41.58 4.85
4308 11145 1.301558 CCTCGATGCATCCTCCTGC 60.302 63.158 20.87 0.00 42.62 4.85
4309 11146 0.317799 CTCCTCGATGCATCCTCCTG 59.682 60.000 20.87 6.65 0.00 3.86
4310 11147 0.187117 TCTCCTCGATGCATCCTCCT 59.813 55.000 20.87 0.00 0.00 3.69
4311 11148 0.602562 CTCTCCTCGATGCATCCTCC 59.397 60.000 20.87 0.00 0.00 4.30
4312 11149 0.602562 CCTCTCCTCGATGCATCCTC 59.397 60.000 20.87 0.00 0.00 3.71
4313 11150 0.831288 CCCTCTCCTCGATGCATCCT 60.831 60.000 20.87 0.00 0.00 3.24
4314 11151 1.118356 ACCCTCTCCTCGATGCATCC 61.118 60.000 20.87 3.71 0.00 3.51
4315 11152 0.033228 CACCCTCTCCTCGATGCATC 59.967 60.000 17.10 17.10 0.00 3.91
4316 11153 0.689080 ACACCCTCTCCTCGATGCAT 60.689 55.000 0.00 0.00 0.00 3.96
4317 11154 0.904865 AACACCCTCTCCTCGATGCA 60.905 55.000 0.00 0.00 0.00 3.96
4318 11155 0.460987 CAACACCCTCTCCTCGATGC 60.461 60.000 0.00 0.00 0.00 3.91
4319 11156 0.176680 CCAACACCCTCTCCTCGATG 59.823 60.000 0.00 0.00 0.00 3.84
4320 11157 0.041238 TCCAACACCCTCTCCTCGAT 59.959 55.000 0.00 0.00 0.00 3.59
4321 11158 1.463375 TCCAACACCCTCTCCTCGA 59.537 57.895 0.00 0.00 0.00 4.04
4322 11159 4.113617 TCCAACACCCTCTCCTCG 57.886 61.111 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.