Multiple sequence alignment - TraesCS5A01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G082500 chr5A 100.000 2687 0 0 1 2687 106856823 106854137 0.000000e+00 4963
1 TraesCS5A01G082500 chr5A 92.837 726 48 2 894 1616 93188350 93189074 0.000000e+00 1050
2 TraesCS5A01G082500 chr5B 90.874 1830 90 30 3 1787 113824466 113822669 0.000000e+00 2383
3 TraesCS5A01G082500 chr5B 92.512 868 51 6 894 1757 113805884 113805027 0.000000e+00 1230
4 TraesCS5A01G082500 chr5B 81.366 483 61 16 2102 2560 531853396 531852919 1.520000e-97 366
5 TraesCS5A01G082500 chr5B 79.154 331 50 13 369 689 621776948 621777269 7.540000e-51 211
6 TraesCS5A01G082500 chr5B 90.066 151 9 4 1924 2068 113822673 113822523 9.820000e-45 191
7 TraesCS5A01G082500 chr5D 92.952 1206 55 16 594 1786 104447456 104446268 0.000000e+00 1729
8 TraesCS5A01G082500 chr5D 92.512 868 55 5 894 1757 104398467 104397606 0.000000e+00 1234
9 TraesCS5A01G082500 chr5D 92.834 614 32 9 1 608 104448079 104447472 0.000000e+00 880
10 TraesCS5A01G082500 chr5D 82.096 458 56 17 2128 2560 557613789 557613333 4.230000e-98 368
11 TraesCS5A01G082500 chr5D 90.728 151 8 4 1924 2068 104446271 104446121 2.110000e-46 196
12 TraesCS5A01G082500 chr6B 83.553 456 45 17 2129 2560 579095696 579096145 1.500000e-107 399
13 TraesCS5A01G082500 chr1D 90.813 283 20 4 2283 2560 418099750 418099469 9.080000e-100 374
14 TraesCS5A01G082500 chr1D 91.045 268 22 2 2294 2560 403232212 403231946 7.070000e-96 361
15 TraesCS5A01G082500 chr3D 91.045 268 19 3 2294 2560 529858690 529858953 9.150000e-95 357
16 TraesCS5A01G082500 chr3D 88.968 281 25 4 2282 2560 593914286 593914562 2.560000e-90 342
17 TraesCS5A01G082500 chr3D 96.899 129 4 0 2559 2687 337380672 337380800 1.620000e-52 217
18 TraesCS5A01G082500 chr3D 85.047 107 13 2 47 150 425145855 425145749 3.660000e-19 106
19 TraesCS5A01G082500 chr7B 90.672 268 24 1 2294 2560 61629527 61629794 3.290000e-94 355
20 TraesCS5A01G082500 chr7B 79.803 203 35 5 2090 2286 580968590 580968388 2.790000e-30 143
21 TraesCS5A01G082500 chr2D 90.672 268 20 3 2294 2556 309166067 309165800 4.260000e-93 351
22 TraesCS5A01G082500 chr3A 80.818 318 50 8 391 701 429658804 429658491 3.460000e-59 239
23 TraesCS5A01G082500 chr3A 81.955 133 16 6 47 174 563400498 563400627 3.660000e-19 106
24 TraesCS5A01G082500 chr2B 80.602 299 44 11 369 657 63848255 63847961 4.500000e-53 219
25 TraesCS5A01G082500 chr2B 96.899 129 4 0 2559 2687 690307432 690307560 1.620000e-52 217
26 TraesCS5A01G082500 chr7A 96.899 129 4 0 2559 2687 59588928 59588800 1.620000e-52 217
27 TraesCS5A01G082500 chr6D 96.899 129 4 0 2559 2687 60637582 60637454 1.620000e-52 217
28 TraesCS5A01G082500 chr6D 96.899 129 4 0 2559 2687 294538867 294538995 1.620000e-52 217
29 TraesCS5A01G082500 chr4D 94.853 136 7 0 2552 2687 64423835 64423970 2.100000e-51 213
30 TraesCS5A01G082500 chr4B 94.245 139 8 0 2549 2687 242175468 242175606 2.100000e-51 213
31 TraesCS5A01G082500 chr4B 78.426 343 60 10 367 701 441320422 441320758 7.540000e-51 211
32 TraesCS5A01G082500 chr3B 95.522 134 5 1 2554 2687 570236340 570236472 2.100000e-51 213
33 TraesCS5A01G082500 chr1B 80.137 292 50 5 369 654 409675820 409676109 7.540000e-51 211
34 TraesCS5A01G082500 chr1B 79.538 303 55 5 369 666 37268062 37268362 2.710000e-50 209
35 TraesCS5A01G082500 chr1B 81.203 133 16 7 47 174 513973251 513973123 6.120000e-17 99
36 TraesCS5A01G082500 chr2A 78.593 327 59 9 369 689 360403617 360403938 3.510000e-49 206
37 TraesCS5A01G082500 chr4A 90.506 158 9 4 2535 2687 580246317 580246161 1.260000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G082500 chr5A 106854137 106856823 2686 True 4963 4963 100.000000 1 2687 1 chr5A.!!$R1 2686
1 TraesCS5A01G082500 chr5A 93188350 93189074 724 False 1050 1050 92.837000 894 1616 1 chr5A.!!$F1 722
2 TraesCS5A01G082500 chr5B 113822523 113824466 1943 True 1287 2383 90.470000 3 2068 2 chr5B.!!$R3 2065
3 TraesCS5A01G082500 chr5B 113805027 113805884 857 True 1230 1230 92.512000 894 1757 1 chr5B.!!$R1 863
4 TraesCS5A01G082500 chr5D 104397606 104398467 861 True 1234 1234 92.512000 894 1757 1 chr5D.!!$R1 863
5 TraesCS5A01G082500 chr5D 104446121 104448079 1958 True 935 1729 92.171333 1 2068 3 chr5D.!!$R3 2067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 761 0.036732 ACATCTGGTGCACCGACATT 59.963 50.0 30.07 12.12 39.43 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2270 0.026285 CAGGAAATAAACGGCGCGAG 59.974 55.0 12.1 5.13 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 319 4.711846 AGCATGTGAGAGTTGGTATCACTA 59.288 41.667 6.17 0.00 46.01 2.74
357 362 2.628178 CGGGGAGAATATCTAGTGCACA 59.372 50.000 21.04 4.13 0.00 4.57
380 386 1.336240 GCTTGTGATGCACCAAACTCC 60.336 52.381 0.00 0.00 32.73 3.85
388 394 1.903860 TGCACCAAACTCCCGTAGTAT 59.096 47.619 0.00 0.00 37.50 2.12
459 466 7.144722 ACATCAACGTATCATGTCACAAATT 57.855 32.000 0.00 0.00 0.00 1.82
489 496 9.844257 AAATCAAAATTTGAAACATACCTGGAA 57.156 25.926 12.75 0.00 43.95 3.53
490 497 9.844257 AATCAAAATTTGAAACATACCTGGAAA 57.156 25.926 12.75 0.00 43.95 3.13
493 500 9.715123 CAAAATTTGAAACATACCTGGAAAAAC 57.285 29.630 0.00 0.00 0.00 2.43
502 509 9.625747 AAACATACCTGGAAAAACAAAAATGAT 57.374 25.926 0.00 0.00 0.00 2.45
600 609 6.311200 GTCAATTTGTATCTTGGGCAATGTTC 59.689 38.462 0.00 0.00 0.00 3.18
676 715 9.490663 CGTGATATAGAATTTTGTTTCCTGTTC 57.509 33.333 0.00 0.00 0.00 3.18
686 725 9.883142 AATTTTGTTTCCTGTTCTTCAAACATA 57.117 25.926 0.00 0.00 31.37 2.29
722 761 0.036732 ACATCTGGTGCACCGACATT 59.963 50.000 30.07 12.12 39.43 2.71
748 787 2.095919 GCACCGATAACACCACAAAGAC 60.096 50.000 0.00 0.00 0.00 3.01
758 797 1.564622 CACAAAGACAGACGCACCG 59.435 57.895 0.00 0.00 0.00 4.94
801 840 2.517875 AGCCCCGCTGCATTGATC 60.518 61.111 0.00 0.00 37.57 2.92
802 841 2.829914 GCCCCGCTGCATTGATCA 60.830 61.111 0.00 0.00 0.00 2.92
803 842 2.198287 GCCCCGCTGCATTGATCAT 61.198 57.895 0.00 0.00 0.00 2.45
804 843 1.741327 GCCCCGCTGCATTGATCATT 61.741 55.000 0.00 0.00 0.00 2.57
805 844 0.748450 CCCCGCTGCATTGATCATTT 59.252 50.000 0.00 0.00 0.00 2.32
806 845 1.537348 CCCCGCTGCATTGATCATTTG 60.537 52.381 0.00 0.00 0.00 2.32
807 846 1.537348 CCCGCTGCATTGATCATTTGG 60.537 52.381 0.00 0.00 0.00 3.28
808 847 1.205657 CGCTGCATTGATCATTTGGC 58.794 50.000 0.00 0.00 0.00 4.52
809 848 1.470112 CGCTGCATTGATCATTTGGCA 60.470 47.619 0.00 3.66 0.00 4.92
810 849 1.931172 GCTGCATTGATCATTTGGCAC 59.069 47.619 0.00 0.00 0.00 5.01
811 850 2.675603 GCTGCATTGATCATTTGGCACA 60.676 45.455 0.00 0.00 0.00 4.57
823 862 3.631453 TGGCACAACTAGGAAGCTG 57.369 52.632 0.00 0.00 31.92 4.24
824 863 0.606401 TGGCACAACTAGGAAGCTGC 60.606 55.000 0.00 0.00 31.92 5.25
861 901 4.359971 AAGCAAAAGCAAAAGCAAAAGG 57.640 36.364 0.00 0.00 0.00 3.11
867 925 5.529581 AAAGCAAAAGCAAAAGGTAGCTA 57.470 34.783 0.00 0.00 40.90 3.32
931 990 2.673368 CAAGCCTCGCCTACAAAAGTAG 59.327 50.000 0.00 0.00 0.00 2.57
943 1002 6.228258 CCTACAAAAGTAGTAGAAACCAGCA 58.772 40.000 0.00 0.00 41.07 4.41
969 1028 2.003830 TCTCTCTTCCCTCCCTCTCAA 58.996 52.381 0.00 0.00 0.00 3.02
970 1029 2.024464 TCTCTCTTCCCTCCCTCTCAAG 60.024 54.545 0.00 0.00 0.00 3.02
1009 1069 2.440796 TAGCTGCCATGGCCAAGC 60.441 61.111 31.89 31.89 39.49 4.01
1041 1101 4.821589 CTCCTCGTCCTTGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
1089 1149 1.349026 CTGACCATCCACAACCTCTGT 59.651 52.381 0.00 0.00 39.56 3.41
1152 1212 0.467384 CCTCCATCTCCGACAATGCT 59.533 55.000 0.00 0.00 0.00 3.79
1191 1251 1.208293 GCGATTCTCTCCCTCACCTTT 59.792 52.381 0.00 0.00 0.00 3.11
1669 1732 0.102300 CGACATGGTCATCCGCACTA 59.898 55.000 0.00 0.00 36.30 2.74
1718 1781 1.471287 TCCGTGTCGTATGTCCTTCTG 59.529 52.381 0.00 0.00 0.00 3.02
1751 1814 1.227234 CTACGCCATGCACGATCCA 60.227 57.895 12.59 0.00 0.00 3.41
1772 1843 6.108687 TCCATCGTAGAGTTAAGAGTTCGTA 58.891 40.000 0.00 0.00 43.63 3.43
1786 1857 6.882458 AGAGTTCGTAAGCGTTAATTAAGG 57.118 37.500 12.51 12.51 39.49 2.69
1787 1858 5.290400 AGAGTTCGTAAGCGTTAATTAAGGC 59.710 40.000 27.43 27.43 44.75 4.35
1788 1859 4.330894 AGTTCGTAAGCGTTAATTAAGGCC 59.669 41.667 29.68 18.30 45.32 5.19
1789 1860 3.197265 TCGTAAGCGTTAATTAAGGCCC 58.803 45.455 29.68 20.11 45.32 5.80
1790 1861 3.118665 TCGTAAGCGTTAATTAAGGCCCT 60.119 43.478 29.68 22.17 45.32 5.19
1791 1862 3.001939 CGTAAGCGTTAATTAAGGCCCTG 59.998 47.826 29.68 18.02 45.32 4.45
1792 1863 2.801077 AGCGTTAATTAAGGCCCTGT 57.199 45.000 29.68 15.10 45.32 4.00
1793 1864 3.081710 AGCGTTAATTAAGGCCCTGTT 57.918 42.857 29.68 14.80 45.32 3.16
1794 1865 3.014623 AGCGTTAATTAAGGCCCTGTTC 58.985 45.455 29.68 9.38 45.32 3.18
1795 1866 2.223180 GCGTTAATTAAGGCCCTGTTCG 60.223 50.000 25.40 11.68 40.18 3.95
1796 1867 2.353579 CGTTAATTAAGGCCCTGTTCGG 59.646 50.000 0.00 0.00 0.00 4.30
1797 1868 3.613030 GTTAATTAAGGCCCTGTTCGGA 58.387 45.455 0.00 0.00 33.16 4.55
1798 1869 2.124277 AATTAAGGCCCTGTTCGGAC 57.876 50.000 0.00 0.00 33.16 4.79
1799 1870 0.988832 ATTAAGGCCCTGTTCGGACA 59.011 50.000 0.00 0.00 30.70 4.02
1800 1871 0.988832 TTAAGGCCCTGTTCGGACAT 59.011 50.000 0.00 0.00 34.72 3.06
1801 1872 0.539986 TAAGGCCCTGTTCGGACATC 59.460 55.000 0.00 0.00 34.72 3.06
1802 1873 2.124695 GGCCCTGTTCGGACATCC 60.125 66.667 0.00 0.00 34.72 3.51
1803 1874 2.668632 GCCCTGTTCGGACATCCA 59.331 61.111 0.00 0.00 34.72 3.41
1804 1875 1.224592 GCCCTGTTCGGACATCCAT 59.775 57.895 0.00 0.00 34.72 3.41
1805 1876 0.815615 GCCCTGTTCGGACATCCATC 60.816 60.000 0.00 0.00 34.72 3.51
1806 1877 0.541392 CCCTGTTCGGACATCCATCA 59.459 55.000 0.00 0.00 34.72 3.07
1807 1878 1.473965 CCCTGTTCGGACATCCATCAG 60.474 57.143 0.00 3.42 34.72 2.90
1808 1879 1.482182 CCTGTTCGGACATCCATCAGA 59.518 52.381 0.00 0.00 34.72 3.27
1809 1880 2.103771 CCTGTTCGGACATCCATCAGAT 59.896 50.000 0.00 0.00 34.72 2.90
1819 1890 4.563337 CATCCATCAGATGCGTGAAATT 57.437 40.909 4.68 0.00 45.76 1.82
1820 1891 5.678132 CATCCATCAGATGCGTGAAATTA 57.322 39.130 4.68 0.00 45.76 1.40
1821 1892 5.686834 CATCCATCAGATGCGTGAAATTAG 58.313 41.667 4.68 0.00 45.76 1.73
1822 1893 5.022282 TCCATCAGATGCGTGAAATTAGA 57.978 39.130 4.68 0.00 0.00 2.10
1823 1894 5.052481 TCCATCAGATGCGTGAAATTAGAG 58.948 41.667 4.68 0.00 0.00 2.43
1824 1895 4.212847 CCATCAGATGCGTGAAATTAGAGG 59.787 45.833 4.68 0.00 0.00 3.69
1825 1896 4.736126 TCAGATGCGTGAAATTAGAGGA 57.264 40.909 0.00 0.00 0.00 3.71
1826 1897 4.686972 TCAGATGCGTGAAATTAGAGGAG 58.313 43.478 0.00 0.00 0.00 3.69
1827 1898 4.160439 TCAGATGCGTGAAATTAGAGGAGT 59.840 41.667 0.00 0.00 0.00 3.85
1828 1899 4.872691 CAGATGCGTGAAATTAGAGGAGTT 59.127 41.667 0.00 0.00 0.00 3.01
1829 1900 6.042777 CAGATGCGTGAAATTAGAGGAGTTA 58.957 40.000 0.00 0.00 0.00 2.24
1830 1901 6.535150 CAGATGCGTGAAATTAGAGGAGTTAA 59.465 38.462 0.00 0.00 0.00 2.01
1831 1902 6.758886 AGATGCGTGAAATTAGAGGAGTTAAG 59.241 38.462 0.00 0.00 0.00 1.85
1832 1903 5.175859 TGCGTGAAATTAGAGGAGTTAAGG 58.824 41.667 0.00 0.00 0.00 2.69
1833 1904 5.046878 TGCGTGAAATTAGAGGAGTTAAGGA 60.047 40.000 0.00 0.00 0.00 3.36
1834 1905 5.520649 GCGTGAAATTAGAGGAGTTAAGGAG 59.479 44.000 0.00 0.00 0.00 3.69
1835 1906 5.520649 CGTGAAATTAGAGGAGTTAAGGAGC 59.479 44.000 0.00 0.00 0.00 4.70
1836 1907 6.407202 GTGAAATTAGAGGAGTTAAGGAGCA 58.593 40.000 0.00 0.00 0.00 4.26
1837 1908 6.314152 GTGAAATTAGAGGAGTTAAGGAGCAC 59.686 42.308 0.00 0.00 0.00 4.40
1838 1909 5.360649 AATTAGAGGAGTTAAGGAGCACC 57.639 43.478 0.00 0.00 0.00 5.01
1852 1923 4.336280 AGGAGCACCTAATTTTCAACTCC 58.664 43.478 0.00 0.00 45.83 3.85
1853 1924 4.079253 GGAGCACCTAATTTTCAACTCCA 58.921 43.478 10.13 0.00 41.68 3.86
1854 1925 4.156739 GGAGCACCTAATTTTCAACTCCAG 59.843 45.833 10.13 0.00 41.68 3.86
1855 1926 4.729868 AGCACCTAATTTTCAACTCCAGT 58.270 39.130 0.00 0.00 0.00 4.00
1856 1927 5.876357 AGCACCTAATTTTCAACTCCAGTA 58.124 37.500 0.00 0.00 0.00 2.74
1857 1928 6.485171 AGCACCTAATTTTCAACTCCAGTAT 58.515 36.000 0.00 0.00 0.00 2.12
1858 1929 6.948309 AGCACCTAATTTTCAACTCCAGTATT 59.052 34.615 0.00 0.00 0.00 1.89
1859 1930 7.451566 AGCACCTAATTTTCAACTCCAGTATTT 59.548 33.333 0.00 0.00 0.00 1.40
1860 1931 8.736244 GCACCTAATTTTCAACTCCAGTATTTA 58.264 33.333 0.00 0.00 0.00 1.40
1874 1945 8.852135 ACTCCAGTATTTAGTCTATAACTCTGC 58.148 37.037 0.00 0.00 39.55 4.26
1875 1946 8.179509 TCCAGTATTTAGTCTATAACTCTGCC 57.820 38.462 0.00 0.00 39.55 4.85
1876 1947 7.040617 TCCAGTATTTAGTCTATAACTCTGCCG 60.041 40.741 0.00 0.00 39.55 5.69
1877 1948 7.085116 CAGTATTTAGTCTATAACTCTGCCGG 58.915 42.308 0.00 0.00 39.55 6.13
1878 1949 4.317671 TTTAGTCTATAACTCTGCCGGC 57.682 45.455 22.73 22.73 39.55 6.13
1879 1950 2.074729 AGTCTATAACTCTGCCGGCT 57.925 50.000 29.70 9.54 30.02 5.52
1880 1951 1.957877 AGTCTATAACTCTGCCGGCTC 59.042 52.381 29.70 0.00 30.02 4.70
1881 1952 1.000052 GTCTATAACTCTGCCGGCTCC 60.000 57.143 29.70 0.00 0.00 4.70
1882 1953 0.039074 CTATAACTCTGCCGGCTCCG 60.039 60.000 29.70 17.34 39.44 4.63
1883 1954 0.754217 TATAACTCTGCCGGCTCCGT 60.754 55.000 29.70 18.03 37.81 4.69
1884 1955 2.298158 ATAACTCTGCCGGCTCCGTG 62.298 60.000 29.70 17.94 37.81 4.94
1888 1959 4.899239 CTGCCGGCTCCGTGGATC 62.899 72.222 29.70 0.00 37.81 3.36
1897 1968 3.444737 CCGTGGATCCGGGTCTAG 58.555 66.667 15.87 6.17 44.32 2.43
1898 1969 2.201022 CCGTGGATCCGGGTCTAGG 61.201 68.421 15.87 14.50 44.32 3.02
1899 1970 1.152819 CGTGGATCCGGGTCTAGGA 60.153 63.158 15.03 0.00 42.69 2.94
1900 1971 1.173444 CGTGGATCCGGGTCTAGGAG 61.173 65.000 15.03 0.00 41.66 3.69
1901 1972 1.152525 TGGATCCGGGTCTAGGAGC 60.153 63.158 15.87 0.00 42.99 4.70
1902 1973 2.269529 GGATCCGGGTCTAGGAGCG 61.270 68.421 15.87 0.00 44.52 5.03
1903 1974 2.203509 ATCCGGGTCTAGGAGCGG 60.204 66.667 0.00 0.00 41.66 5.52
1904 1975 2.693896 GATCCGGGTCTAGGAGCGGA 62.694 65.000 7.71 0.00 41.66 5.54
1905 1976 2.700407 ATCCGGGTCTAGGAGCGGAG 62.700 65.000 0.00 3.28 41.66 4.63
1906 1977 2.907917 CGGGTCTAGGAGCGGAGG 60.908 72.222 0.00 0.00 33.32 4.30
1907 1978 2.522193 GGGTCTAGGAGCGGAGGG 60.522 72.222 0.00 0.00 0.00 4.30
1908 1979 2.601868 GGTCTAGGAGCGGAGGGA 59.398 66.667 0.00 0.00 0.00 4.20
1909 1980 1.829096 GGTCTAGGAGCGGAGGGAC 60.829 68.421 0.00 0.00 0.00 4.46
1922 1993 2.363297 AGGGACTCCGAACACTTCC 58.637 57.895 0.00 0.00 38.33 3.46
1923 1994 0.178929 AGGGACTCCGAACACTTCCT 60.179 55.000 0.00 0.00 38.33 3.36
1924 1995 1.076677 AGGGACTCCGAACACTTCCTA 59.923 52.381 0.00 0.00 38.33 2.94
1925 1996 1.897802 GGGACTCCGAACACTTCCTAA 59.102 52.381 0.00 0.00 0.00 2.69
1926 1997 2.094130 GGGACTCCGAACACTTCCTAAG 60.094 54.545 0.00 0.00 0.00 2.18
1950 2021 4.586421 TGGCCAGTTTTCATACAAATGTCA 59.414 37.500 0.00 0.00 34.50 3.58
1957 2028 9.729023 CAGTTTTCATACAAATGTCACAGTTTA 57.271 29.630 0.00 0.00 34.50 2.01
2068 2145 7.051623 ACCAACCGATGCTATATTTGTAAGAA 58.948 34.615 0.00 0.00 0.00 2.52
2069 2146 7.012044 ACCAACCGATGCTATATTTGTAAGAAC 59.988 37.037 0.00 0.00 0.00 3.01
2070 2147 7.011950 CCAACCGATGCTATATTTGTAAGAACA 59.988 37.037 0.00 0.00 0.00 3.18
2071 2148 8.559536 CAACCGATGCTATATTTGTAAGAACAT 58.440 33.333 0.00 0.00 34.97 2.71
2072 2149 8.311650 ACCGATGCTATATTTGTAAGAACATC 57.688 34.615 0.00 0.00 34.97 3.06
2073 2150 8.150945 ACCGATGCTATATTTGTAAGAACATCT 58.849 33.333 0.00 0.00 34.97 2.90
2074 2151 8.651588 CCGATGCTATATTTGTAAGAACATCTC 58.348 37.037 0.00 0.00 34.97 2.75
2075 2152 8.651588 CGATGCTATATTTGTAAGAACATCTCC 58.348 37.037 0.00 0.00 34.97 3.71
2076 2153 9.494271 GATGCTATATTTGTAAGAACATCTCCA 57.506 33.333 0.00 0.00 34.97 3.86
2077 2154 9.851686 ATGCTATATTTGTAAGAACATCTCCAA 57.148 29.630 0.00 0.00 34.97 3.53
2078 2155 9.109393 TGCTATATTTGTAAGAACATCTCCAAC 57.891 33.333 0.00 0.00 34.97 3.77
2079 2156 9.109393 GCTATATTTGTAAGAACATCTCCAACA 57.891 33.333 0.00 0.00 34.97 3.33
2082 2159 6.861065 TTTGTAAGAACATCTCCAACAGTC 57.139 37.500 0.00 0.00 34.97 3.51
2083 2160 4.556233 TGTAAGAACATCTCCAACAGTCG 58.444 43.478 0.00 0.00 0.00 4.18
2084 2161 2.086054 AGAACATCTCCAACAGTCGC 57.914 50.000 0.00 0.00 0.00 5.19
2085 2162 1.344438 AGAACATCTCCAACAGTCGCA 59.656 47.619 0.00 0.00 0.00 5.10
2086 2163 1.461127 GAACATCTCCAACAGTCGCAC 59.539 52.381 0.00 0.00 0.00 5.34
2087 2164 0.681733 ACATCTCCAACAGTCGCACT 59.318 50.000 0.00 0.00 0.00 4.40
2088 2165 1.337260 ACATCTCCAACAGTCGCACTC 60.337 52.381 0.00 0.00 0.00 3.51
2089 2166 0.109086 ATCTCCAACAGTCGCACTCG 60.109 55.000 0.00 0.00 0.00 4.18
2090 2167 1.170290 TCTCCAACAGTCGCACTCGA 61.170 55.000 0.00 0.00 43.28 4.04
2100 2177 0.878416 TCGCACTCGAAATTTTGGGG 59.122 50.000 10.15 4.42 42.44 4.96
2101 2178 0.596082 CGCACTCGAAATTTTGGGGT 59.404 50.000 10.15 4.99 38.10 4.95
2102 2179 1.000717 CGCACTCGAAATTTTGGGGTT 60.001 47.619 10.15 0.00 38.10 4.11
2103 2180 2.544903 CGCACTCGAAATTTTGGGGTTT 60.545 45.455 10.15 0.00 38.10 3.27
2104 2181 3.462982 GCACTCGAAATTTTGGGGTTTT 58.537 40.909 10.15 0.00 0.00 2.43
2105 2182 4.623002 GCACTCGAAATTTTGGGGTTTTA 58.377 39.130 10.15 0.00 0.00 1.52
2106 2183 4.684242 GCACTCGAAATTTTGGGGTTTTAG 59.316 41.667 10.15 0.00 0.00 1.85
2107 2184 5.737922 GCACTCGAAATTTTGGGGTTTTAGT 60.738 40.000 10.15 0.00 0.00 2.24
2108 2185 5.689961 CACTCGAAATTTTGGGGTTTTAGTG 59.310 40.000 10.15 8.16 31.47 2.74
2109 2186 4.623002 TCGAAATTTTGGGGTTTTAGTGC 58.377 39.130 5.58 0.00 0.00 4.40
2110 2187 3.427193 CGAAATTTTGGGGTTTTAGTGCG 59.573 43.478 0.00 0.00 0.00 5.34
2111 2188 2.448926 ATTTTGGGGTTTTAGTGCGC 57.551 45.000 0.00 0.00 0.00 6.09
2112 2189 0.030908 TTTTGGGGTTTTAGTGCGCG 59.969 50.000 0.00 0.00 0.00 6.86
2113 2190 2.409241 TTTGGGGTTTTAGTGCGCGC 62.409 55.000 27.26 27.26 0.00 6.86
2114 2191 4.454717 GGGGTTTTAGTGCGCGCG 62.455 66.667 28.44 28.44 0.00 6.86
2115 2192 3.719144 GGGTTTTAGTGCGCGCGT 61.719 61.111 32.35 18.96 0.00 6.01
2116 2193 2.381967 GGGTTTTAGTGCGCGCGTA 61.382 57.895 32.35 26.20 0.00 4.42
2117 2194 1.492436 GGTTTTAGTGCGCGCGTAA 59.508 52.632 32.35 22.63 0.00 3.18
2118 2195 0.786806 GGTTTTAGTGCGCGCGTAAC 60.787 55.000 32.35 27.67 0.00 2.50
2119 2196 0.786806 GTTTTAGTGCGCGCGTAACC 60.787 55.000 32.35 16.26 0.00 2.85
2120 2197 2.212998 TTTTAGTGCGCGCGTAACCG 62.213 55.000 32.35 3.26 37.07 4.44
2130 2207 2.264794 CGTAACCGCTTGGGAGCT 59.735 61.111 0.00 0.00 46.96 4.09
2131 2208 1.810030 CGTAACCGCTTGGGAGCTC 60.810 63.158 4.71 4.71 46.96 4.09
2132 2209 1.449778 GTAACCGCTTGGGAGCTCC 60.450 63.158 25.59 25.59 46.96 4.70
2133 2210 1.916273 TAACCGCTTGGGAGCTCCA 60.916 57.895 33.29 17.15 46.96 3.86
2146 2223 2.579201 CTCCAACGGAGGCGTCAT 59.421 61.111 8.91 0.00 45.43 3.06
2147 2224 1.813859 CTCCAACGGAGGCGTCATA 59.186 57.895 8.91 0.00 45.43 2.15
2148 2225 0.174845 CTCCAACGGAGGCGTCATAA 59.825 55.000 8.91 0.00 45.43 1.90
2149 2226 0.108520 TCCAACGGAGGCGTCATAAC 60.109 55.000 8.91 0.00 0.00 1.89
2150 2227 1.087771 CCAACGGAGGCGTCATAACC 61.088 60.000 8.91 0.00 0.00 2.85
2168 2245 2.804931 GCGCGCGGCAAAAAGATT 60.805 55.556 33.06 0.00 42.87 2.40
2169 2246 2.371923 GCGCGCGGCAAAAAGATTT 61.372 52.632 33.06 0.00 42.87 2.17
2170 2247 1.696083 CGCGCGGCAAAAAGATTTC 59.304 52.632 24.84 0.00 0.00 2.17
2171 2248 1.001240 CGCGCGGCAAAAAGATTTCA 61.001 50.000 24.84 0.00 0.00 2.69
2172 2249 0.710017 GCGCGGCAAAAAGATTTCAG 59.290 50.000 8.83 0.00 0.00 3.02
2173 2250 0.710017 CGCGGCAAAAAGATTTCAGC 59.290 50.000 0.00 0.00 0.00 4.26
2174 2251 0.710017 GCGGCAAAAAGATTTCAGCG 59.290 50.000 0.00 0.00 0.00 5.18
2175 2252 0.710017 CGGCAAAAAGATTTCAGCGC 59.290 50.000 0.00 0.00 0.00 5.92
2176 2253 0.710017 GGCAAAAAGATTTCAGCGCG 59.290 50.000 0.00 0.00 0.00 6.86
2177 2254 1.408422 GCAAAAAGATTTCAGCGCGT 58.592 45.000 8.43 0.00 0.00 6.01
2178 2255 1.123038 GCAAAAAGATTTCAGCGCGTG 59.877 47.619 8.43 5.06 0.00 5.34
2179 2256 2.384382 CAAAAAGATTTCAGCGCGTGT 58.616 42.857 8.43 0.00 0.00 4.49
2180 2257 2.774439 AAAAGATTTCAGCGCGTGTT 57.226 40.000 8.43 0.00 0.00 3.32
2181 2258 2.316119 AAAGATTTCAGCGCGTGTTC 57.684 45.000 8.43 0.00 0.00 3.18
2182 2259 0.517316 AAGATTTCAGCGCGTGTTCC 59.483 50.000 8.43 0.00 0.00 3.62
2183 2260 1.225745 GATTTCAGCGCGTGTTCCG 60.226 57.895 8.43 0.00 40.40 4.30
2184 2261 1.623081 GATTTCAGCGCGTGTTCCGA 61.623 55.000 8.43 0.00 39.56 4.55
2185 2262 1.225376 ATTTCAGCGCGTGTTCCGAA 61.225 50.000 8.43 0.00 39.56 4.30
2186 2263 1.429927 TTTCAGCGCGTGTTCCGAAA 61.430 50.000 8.43 5.39 39.56 3.46
2187 2264 2.096481 TTCAGCGCGTGTTCCGAAAC 62.096 55.000 8.43 0.00 39.56 2.78
2188 2265 3.698463 AGCGCGTGTTCCGAAACG 61.698 61.111 8.43 9.90 42.61 3.60
2192 2269 3.249999 CGTGTTCCGAAACGCCAT 58.750 55.556 0.00 0.00 41.82 4.40
2193 2270 1.131826 CGTGTTCCGAAACGCCATC 59.868 57.895 0.00 0.00 41.82 3.51
2194 2271 1.289109 CGTGTTCCGAAACGCCATCT 61.289 55.000 0.00 0.00 41.82 2.90
2195 2272 0.442699 GTGTTCCGAAACGCCATCTC 59.557 55.000 0.00 0.00 39.49 2.75
2196 2273 1.011968 TGTTCCGAAACGCCATCTCG 61.012 55.000 0.00 0.00 38.28 4.04
2197 2274 2.098233 TTCCGAAACGCCATCTCGC 61.098 57.895 0.00 0.00 0.00 5.03
2205 2282 2.888534 GCCATCTCGCGCCGTTTA 60.889 61.111 0.00 0.00 0.00 2.01
2206 2283 2.244651 GCCATCTCGCGCCGTTTAT 61.245 57.895 0.00 0.00 0.00 1.40
2207 2284 1.772063 GCCATCTCGCGCCGTTTATT 61.772 55.000 0.00 0.00 0.00 1.40
2208 2285 0.655733 CCATCTCGCGCCGTTTATTT 59.344 50.000 0.00 0.00 0.00 1.40
2209 2286 1.332904 CCATCTCGCGCCGTTTATTTC 60.333 52.381 0.00 0.00 0.00 2.17
2210 2287 0.935196 ATCTCGCGCCGTTTATTTCC 59.065 50.000 0.00 0.00 0.00 3.13
2211 2288 0.108520 TCTCGCGCCGTTTATTTCCT 60.109 50.000 0.00 0.00 0.00 3.36
2212 2289 0.026285 CTCGCGCCGTTTATTTCCTG 59.974 55.000 0.00 0.00 0.00 3.86
2213 2290 1.061887 CGCGCCGTTTATTTCCTGG 59.938 57.895 0.00 0.00 0.00 4.45
2214 2291 1.226575 GCGCCGTTTATTTCCTGGC 60.227 57.895 0.00 0.00 42.29 4.85
2215 2292 1.431845 CGCCGTTTATTTCCTGGCC 59.568 57.895 0.00 0.00 42.76 5.36
2216 2293 1.813859 GCCGTTTATTTCCTGGCCC 59.186 57.895 0.00 0.00 39.83 5.80
2217 2294 2.000215 GCCGTTTATTTCCTGGCCCG 62.000 60.000 0.00 0.00 39.83 6.13
2218 2295 1.431845 CGTTTATTTCCTGGCCCGC 59.568 57.895 0.00 0.00 0.00 6.13
2219 2296 1.029947 CGTTTATTTCCTGGCCCGCT 61.030 55.000 0.00 0.00 0.00 5.52
2220 2297 0.738975 GTTTATTTCCTGGCCCGCTC 59.261 55.000 0.00 0.00 0.00 5.03
2221 2298 0.395173 TTTATTTCCTGGCCCGCTCC 60.395 55.000 0.00 0.00 0.00 4.70
2222 2299 1.279025 TTATTTCCTGGCCCGCTCCT 61.279 55.000 0.00 0.00 0.00 3.69
2223 2300 1.983119 TATTTCCTGGCCCGCTCCTG 61.983 60.000 0.00 0.00 0.00 3.86
2299 2376 4.680237 CGCGCAGTCAACCCCTCA 62.680 66.667 8.75 0.00 0.00 3.86
2300 2377 3.050275 GCGCAGTCAACCCCTCAC 61.050 66.667 0.30 0.00 0.00 3.51
2301 2378 2.358737 CGCAGTCAACCCCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
2302 2379 2.034221 GCAGTCAACCCCTCACCC 59.966 66.667 0.00 0.00 0.00 4.61
2303 2380 2.757077 CAGTCAACCCCTCACCCC 59.243 66.667 0.00 0.00 0.00 4.95
2304 2381 1.847968 CAGTCAACCCCTCACCCCT 60.848 63.158 0.00 0.00 0.00 4.79
2305 2382 1.072930 AGTCAACCCCTCACCCCTT 60.073 57.895 0.00 0.00 0.00 3.95
2306 2383 1.134438 AGTCAACCCCTCACCCCTTC 61.134 60.000 0.00 0.00 0.00 3.46
2307 2384 1.850755 TCAACCCCTCACCCCTTCC 60.851 63.158 0.00 0.00 0.00 3.46
2308 2385 1.852626 CAACCCCTCACCCCTTCCT 60.853 63.158 0.00 0.00 0.00 3.36
2309 2386 0.549169 CAACCCCTCACCCCTTCCTA 60.549 60.000 0.00 0.00 0.00 2.94
2310 2387 0.549413 AACCCCTCACCCCTTCCTAC 60.549 60.000 0.00 0.00 0.00 3.18
2311 2388 1.396594 CCCCTCACCCCTTCCTACT 59.603 63.158 0.00 0.00 0.00 2.57
2312 2389 0.691413 CCCCTCACCCCTTCCTACTC 60.691 65.000 0.00 0.00 0.00 2.59
2313 2390 0.691413 CCCTCACCCCTTCCTACTCC 60.691 65.000 0.00 0.00 0.00 3.85
2314 2391 0.691413 CCTCACCCCTTCCTACTCCC 60.691 65.000 0.00 0.00 0.00 4.30
2315 2392 1.001248 TCACCCCTTCCTACTCCCG 59.999 63.158 0.00 0.00 0.00 5.14
2316 2393 2.365237 ACCCCTTCCTACTCCCGC 60.365 66.667 0.00 0.00 0.00 6.13
2317 2394 3.537874 CCCCTTCCTACTCCCGCG 61.538 72.222 0.00 0.00 0.00 6.46
2318 2395 2.441532 CCCTTCCTACTCCCGCGA 60.442 66.667 8.23 0.00 0.00 5.87
2319 2396 2.783288 CCCTTCCTACTCCCGCGAC 61.783 68.421 8.23 0.00 0.00 5.19
2320 2397 2.783288 CCTTCCTACTCCCGCGACC 61.783 68.421 8.23 0.00 0.00 4.79
2321 2398 2.757099 TTCCTACTCCCGCGACCC 60.757 66.667 8.23 0.00 0.00 4.46
2322 2399 4.828296 TCCTACTCCCGCGACCCC 62.828 72.222 8.23 0.00 0.00 4.95
2323 2400 4.835891 CCTACTCCCGCGACCCCT 62.836 72.222 8.23 0.00 0.00 4.79
2324 2401 3.217743 CTACTCCCGCGACCCCTC 61.218 72.222 8.23 0.00 0.00 4.30
2325 2402 4.828296 TACTCCCGCGACCCCTCC 62.828 72.222 8.23 0.00 0.00 4.30
2344 2421 2.124901 CCATCGCCGCAAACCCTA 60.125 61.111 0.00 0.00 0.00 3.53
2345 2422 2.180204 CCATCGCCGCAAACCCTAG 61.180 63.158 0.00 0.00 0.00 3.02
2346 2423 2.513897 ATCGCCGCAAACCCTAGC 60.514 61.111 0.00 0.00 0.00 3.42
2357 2434 3.782443 CCCTAGCGCGGGGAGTTT 61.782 66.667 29.29 1.07 46.50 2.66
2358 2435 2.267961 CCTAGCGCGGGGAGTTTT 59.732 61.111 8.83 0.00 0.00 2.43
2359 2436 1.376812 CCTAGCGCGGGGAGTTTTT 60.377 57.895 8.83 0.00 0.00 1.94
2360 2437 1.644786 CCTAGCGCGGGGAGTTTTTG 61.645 60.000 8.83 0.00 0.00 2.44
2361 2438 2.253414 CTAGCGCGGGGAGTTTTTGC 62.253 60.000 8.83 0.00 0.00 3.68
2362 2439 2.741486 TAGCGCGGGGAGTTTTTGCT 62.741 55.000 8.83 0.00 35.12 3.91
2363 2440 3.039134 CGCGGGGAGTTTTTGCTT 58.961 55.556 0.00 0.00 0.00 3.91
2364 2441 1.081442 CGCGGGGAGTTTTTGCTTC 60.081 57.895 0.00 0.00 0.00 3.86
2365 2442 1.081442 GCGGGGAGTTTTTGCTTCG 60.081 57.895 0.00 0.00 0.00 3.79
2366 2443 1.081442 CGGGGAGTTTTTGCTTCGC 60.081 57.895 0.00 0.00 0.00 4.70
2367 2444 1.289066 GGGGAGTTTTTGCTTCGCC 59.711 57.895 0.00 0.00 0.00 5.54
2368 2445 1.179174 GGGGAGTTTTTGCTTCGCCT 61.179 55.000 0.19 0.00 0.00 5.52
2369 2446 0.241213 GGGAGTTTTTGCTTCGCCTC 59.759 55.000 0.00 0.00 0.00 4.70
2370 2447 0.241213 GGAGTTTTTGCTTCGCCTCC 59.759 55.000 0.00 0.00 32.45 4.30
2371 2448 0.110192 GAGTTTTTGCTTCGCCTCCG 60.110 55.000 0.00 0.00 0.00 4.63
2372 2449 1.729484 GTTTTTGCTTCGCCTCCGC 60.729 57.895 0.00 0.00 0.00 5.54
2373 2450 2.914908 TTTTTGCTTCGCCTCCGCC 61.915 57.895 0.00 0.00 0.00 6.13
2374 2451 4.634703 TTTGCTTCGCCTCCGCCA 62.635 61.111 0.00 0.00 0.00 5.69
2383 2460 4.154347 CCTCCGCCAGTGCTCCTC 62.154 72.222 0.00 0.00 34.43 3.71
2384 2461 4.154347 CTCCGCCAGTGCTCCTCC 62.154 72.222 0.00 0.00 34.43 4.30
2386 2463 4.020617 CCGCCAGTGCTCCTCCAA 62.021 66.667 0.00 0.00 34.43 3.53
2387 2464 2.435586 CGCCAGTGCTCCTCCAAG 60.436 66.667 0.00 0.00 34.43 3.61
2388 2465 2.749441 GCCAGTGCTCCTCCAAGC 60.749 66.667 0.00 0.00 42.82 4.01
2393 2470 4.020617 TGCTCCTCCAAGCACCGG 62.021 66.667 0.00 0.00 47.00 5.28
2395 2472 4.020617 CTCCTCCAAGCACCGGCA 62.021 66.667 0.00 0.00 44.61 5.69
2396 2473 3.329889 TCCTCCAAGCACCGGCAT 61.330 61.111 0.00 0.00 44.61 4.40
2397 2474 2.825836 CCTCCAAGCACCGGCATC 60.826 66.667 0.00 0.00 44.61 3.91
2398 2475 3.197790 CTCCAAGCACCGGCATCG 61.198 66.667 0.00 0.00 44.61 3.84
2411 2488 4.101790 CATCGCGCACGGCCTTTT 62.102 61.111 8.75 0.00 40.63 2.27
2412 2489 3.799755 ATCGCGCACGGCCTTTTC 61.800 61.111 8.75 0.00 40.63 2.29
2414 2491 4.101790 CGCGCACGGCCTTTTCAT 62.102 61.111 8.75 0.00 38.94 2.57
2415 2492 2.504681 GCGCACGGCCTTTTCATG 60.505 61.111 0.30 0.00 34.80 3.07
2416 2493 2.504681 CGCACGGCCTTTTCATGC 60.505 61.111 0.00 0.00 0.00 4.06
2417 2494 2.125952 GCACGGCCTTTTCATGCC 60.126 61.111 0.00 0.00 44.41 4.40
2421 2498 3.381136 GGCCTTTTCATGCCGCCA 61.381 61.111 0.00 0.00 39.50 5.69
2422 2499 2.125952 GCCTTTTCATGCCGCCAC 60.126 61.111 0.00 0.00 0.00 5.01
2423 2500 2.179018 CCTTTTCATGCCGCCACG 59.821 61.111 0.00 0.00 0.00 4.94
2488 2565 3.691342 CACGTGCCCCCTCTCGAA 61.691 66.667 0.82 0.00 0.00 3.71
2489 2566 3.382832 ACGTGCCCCCTCTCGAAG 61.383 66.667 0.00 0.00 0.00 3.79
2490 2567 4.821589 CGTGCCCCCTCTCGAAGC 62.822 72.222 0.00 0.00 0.00 3.86
2491 2568 3.394836 GTGCCCCCTCTCGAAGCT 61.395 66.667 0.00 0.00 0.00 3.74
2492 2569 3.077556 TGCCCCCTCTCGAAGCTC 61.078 66.667 0.00 0.00 0.00 4.09
2493 2570 3.855853 GCCCCCTCTCGAAGCTCC 61.856 72.222 0.00 0.00 0.00 4.70
2494 2571 3.157949 CCCCCTCTCGAAGCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
2495 2572 2.364317 CCCCTCTCGAAGCTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
2496 2573 1.990060 CCCCTCTCGAAGCTCCCAA 60.990 63.158 0.00 0.00 0.00 4.12
2497 2574 1.553690 CCCCTCTCGAAGCTCCCAAA 61.554 60.000 0.00 0.00 0.00 3.28
2498 2575 0.543749 CCCTCTCGAAGCTCCCAAAT 59.456 55.000 0.00 0.00 0.00 2.32
2499 2576 1.661341 CCTCTCGAAGCTCCCAAATG 58.339 55.000 0.00 0.00 0.00 2.32
2500 2577 1.012841 CTCTCGAAGCTCCCAAATGC 58.987 55.000 0.00 0.00 0.00 3.56
2501 2578 0.740868 TCTCGAAGCTCCCAAATGCG 60.741 55.000 0.00 0.00 0.00 4.73
2502 2579 1.709147 CTCGAAGCTCCCAAATGCGG 61.709 60.000 0.00 0.00 0.00 5.69
2503 2580 2.040544 CGAAGCTCCCAAATGCGGT 61.041 57.895 0.00 0.00 0.00 5.68
2504 2581 1.508088 GAAGCTCCCAAATGCGGTG 59.492 57.895 0.00 0.00 0.00 4.94
2505 2582 2.548127 GAAGCTCCCAAATGCGGTGC 62.548 60.000 0.00 6.79 39.63 5.01
2506 2583 4.481112 GCTCCCAAATGCGGTGCG 62.481 66.667 0.00 0.00 30.88 5.34
2507 2584 3.814268 CTCCCAAATGCGGTGCGG 61.814 66.667 0.00 0.00 0.00 5.69
2517 2594 4.398598 CGGTGCGGGCGAAAAAGG 62.399 66.667 0.00 0.00 0.00 3.11
2518 2595 4.050934 GGTGCGGGCGAAAAAGGG 62.051 66.667 0.00 0.00 0.00 3.95
2519 2596 4.717629 GTGCGGGCGAAAAAGGGC 62.718 66.667 0.00 0.00 0.00 5.19
2521 2598 3.984749 GCGGGCGAAAAAGGGCAA 61.985 61.111 0.00 0.00 0.00 4.52
2522 2599 2.258286 CGGGCGAAAAAGGGCAAG 59.742 61.111 0.00 0.00 0.00 4.01
2523 2600 2.656646 GGGCGAAAAAGGGCAAGG 59.343 61.111 0.00 0.00 0.00 3.61
2524 2601 2.207229 GGGCGAAAAAGGGCAAGGT 61.207 57.895 0.00 0.00 0.00 3.50
2525 2602 1.006220 GGCGAAAAAGGGCAAGGTG 60.006 57.895 0.00 0.00 0.00 4.00
2526 2603 1.739667 GCGAAAAAGGGCAAGGTGT 59.260 52.632 0.00 0.00 0.00 4.16
2527 2604 0.318699 GCGAAAAAGGGCAAGGTGTC 60.319 55.000 0.00 0.00 0.00 3.67
2528 2605 0.313987 CGAAAAAGGGCAAGGTGTCC 59.686 55.000 0.00 0.00 44.07 4.02
2534 2611 3.423154 GGCAAGGTGTCCGCGAAG 61.423 66.667 8.23 0.00 0.00 3.79
2535 2612 2.357034 GCAAGGTGTCCGCGAAGA 60.357 61.111 8.23 0.00 0.00 2.87
2536 2613 1.959226 GCAAGGTGTCCGCGAAGAA 60.959 57.895 8.23 0.00 0.00 2.52
2537 2614 1.901650 GCAAGGTGTCCGCGAAGAAG 61.902 60.000 8.23 0.00 0.00 2.85
2538 2615 0.319555 CAAGGTGTCCGCGAAGAAGA 60.320 55.000 8.23 0.00 0.00 2.87
2539 2616 0.391597 AAGGTGTCCGCGAAGAAGAA 59.608 50.000 8.23 0.00 0.00 2.52
2540 2617 0.319641 AGGTGTCCGCGAAGAAGAAC 60.320 55.000 8.23 0.00 0.00 3.01
2541 2618 0.599204 GGTGTCCGCGAAGAAGAACA 60.599 55.000 8.23 0.00 0.00 3.18
2542 2619 1.214367 GTGTCCGCGAAGAAGAACAA 58.786 50.000 8.23 0.00 0.00 2.83
2543 2620 1.192534 GTGTCCGCGAAGAAGAACAAG 59.807 52.381 8.23 0.00 0.00 3.16
2544 2621 0.790814 GTCCGCGAAGAAGAACAAGG 59.209 55.000 8.23 0.00 0.00 3.61
2545 2622 0.391597 TCCGCGAAGAAGAACAAGGT 59.608 50.000 8.23 0.00 0.00 3.50
2546 2623 0.512952 CCGCGAAGAAGAACAAGGTG 59.487 55.000 8.23 0.00 0.00 4.00
2547 2624 0.512952 CGCGAAGAAGAACAAGGTGG 59.487 55.000 0.00 0.00 0.00 4.61
2548 2625 0.238553 GCGAAGAAGAACAAGGTGGC 59.761 55.000 0.00 0.00 0.00 5.01
2549 2626 0.512952 CGAAGAAGAACAAGGTGGCG 59.487 55.000 0.00 0.00 0.00 5.69
2550 2627 0.875059 GAAGAAGAACAAGGTGGCGG 59.125 55.000 0.00 0.00 0.00 6.13
2551 2628 0.472471 AAGAAGAACAAGGTGGCGGA 59.528 50.000 0.00 0.00 0.00 5.54
2552 2629 0.250338 AGAAGAACAAGGTGGCGGAC 60.250 55.000 0.00 0.00 0.00 4.79
2553 2630 1.566018 GAAGAACAAGGTGGCGGACG 61.566 60.000 0.00 0.00 0.00 4.79
2554 2631 3.047877 GAACAAGGTGGCGGACGG 61.048 66.667 0.00 0.00 0.00 4.79
2563 2640 4.162690 GGCGGACGGCTCCTTGAT 62.163 66.667 11.19 0.00 42.94 2.57
2564 2641 2.792947 GGCGGACGGCTCCTTGATA 61.793 63.158 11.19 0.00 42.94 2.15
2565 2642 1.143183 GCGGACGGCTCCTTGATAA 59.857 57.895 0.00 0.00 39.11 1.75
2566 2643 1.152383 GCGGACGGCTCCTTGATAAC 61.152 60.000 0.00 0.00 39.11 1.89
2567 2644 0.529992 CGGACGGCTCCTTGATAACC 60.530 60.000 0.00 0.00 33.79 2.85
2568 2645 0.179054 GGACGGCTCCTTGATAACCC 60.179 60.000 0.00 0.00 33.07 4.11
2569 2646 0.539986 GACGGCTCCTTGATAACCCA 59.460 55.000 0.00 0.00 0.00 4.51
2570 2647 0.252197 ACGGCTCCTTGATAACCCAC 59.748 55.000 0.00 0.00 0.00 4.61
2571 2648 0.251916 CGGCTCCTTGATAACCCACA 59.748 55.000 0.00 0.00 0.00 4.17
2572 2649 1.339631 CGGCTCCTTGATAACCCACAA 60.340 52.381 0.00 0.00 0.00 3.33
2573 2650 2.369394 GGCTCCTTGATAACCCACAAG 58.631 52.381 0.00 0.00 41.85 3.16
2574 2651 2.290960 GGCTCCTTGATAACCCACAAGT 60.291 50.000 0.00 0.00 40.98 3.16
2575 2652 3.054655 GGCTCCTTGATAACCCACAAGTA 60.055 47.826 0.00 0.00 40.98 2.24
2576 2653 4.385310 GGCTCCTTGATAACCCACAAGTAT 60.385 45.833 0.00 0.00 40.98 2.12
2577 2654 5.163237 GGCTCCTTGATAACCCACAAGTATA 60.163 44.000 0.00 0.00 40.98 1.47
2578 2655 5.992217 GCTCCTTGATAACCCACAAGTATAG 59.008 44.000 0.00 0.00 40.98 1.31
2579 2656 6.408206 GCTCCTTGATAACCCACAAGTATAGT 60.408 42.308 0.00 0.00 40.98 2.12
2580 2657 6.884832 TCCTTGATAACCCACAAGTATAGTG 58.115 40.000 0.00 0.00 40.98 2.74
2590 2667 5.878332 CACAAGTATAGTGGATTGCAACA 57.122 39.130 0.00 0.00 33.43 3.33
2591 2668 5.872635 CACAAGTATAGTGGATTGCAACAG 58.127 41.667 0.00 0.00 33.43 3.16
2592 2669 5.412594 CACAAGTATAGTGGATTGCAACAGT 59.587 40.000 0.00 1.51 33.43 3.55
2593 2670 6.003950 ACAAGTATAGTGGATTGCAACAGTT 58.996 36.000 0.00 0.00 0.00 3.16
2594 2671 6.490040 ACAAGTATAGTGGATTGCAACAGTTT 59.510 34.615 0.00 0.00 0.00 2.66
2595 2672 7.014230 ACAAGTATAGTGGATTGCAACAGTTTT 59.986 33.333 0.00 0.00 0.00 2.43
2596 2673 7.145932 AGTATAGTGGATTGCAACAGTTTTC 57.854 36.000 0.00 0.00 0.00 2.29
2597 2674 3.354089 AGTGGATTGCAACAGTTTTCG 57.646 42.857 0.00 0.00 0.00 3.46
2598 2675 2.948979 AGTGGATTGCAACAGTTTTCGA 59.051 40.909 0.00 0.00 0.00 3.71
2599 2676 3.003689 AGTGGATTGCAACAGTTTTCGAG 59.996 43.478 0.00 0.00 0.00 4.04
2600 2677 2.293122 TGGATTGCAACAGTTTTCGAGG 59.707 45.455 0.00 0.00 0.00 4.63
2601 2678 2.351738 GGATTGCAACAGTTTTCGAGGG 60.352 50.000 0.00 0.00 0.00 4.30
2602 2679 1.757682 TTGCAACAGTTTTCGAGGGT 58.242 45.000 0.00 0.00 0.00 4.34
2603 2680 1.021202 TGCAACAGTTTTCGAGGGTG 58.979 50.000 0.00 0.00 0.00 4.61
2604 2681 0.310854 GCAACAGTTTTCGAGGGTGG 59.689 55.000 0.00 0.00 0.00 4.61
2605 2682 1.961793 CAACAGTTTTCGAGGGTGGA 58.038 50.000 0.00 0.00 0.00 4.02
2606 2683 1.873591 CAACAGTTTTCGAGGGTGGAG 59.126 52.381 0.00 0.00 0.00 3.86
2607 2684 1.129058 ACAGTTTTCGAGGGTGGAGT 58.871 50.000 0.00 0.00 0.00 3.85
2608 2685 2.322658 ACAGTTTTCGAGGGTGGAGTA 58.677 47.619 0.00 0.00 0.00 2.59
2609 2686 2.904434 ACAGTTTTCGAGGGTGGAGTAT 59.096 45.455 0.00 0.00 0.00 2.12
2610 2687 3.326880 ACAGTTTTCGAGGGTGGAGTATT 59.673 43.478 0.00 0.00 0.00 1.89
2611 2688 3.933332 CAGTTTTCGAGGGTGGAGTATTC 59.067 47.826 0.00 0.00 0.00 1.75
2612 2689 3.581332 AGTTTTCGAGGGTGGAGTATTCA 59.419 43.478 0.00 0.00 0.00 2.57
2613 2690 4.041198 AGTTTTCGAGGGTGGAGTATTCAA 59.959 41.667 0.00 0.00 0.00 2.69
2614 2691 3.604875 TTCGAGGGTGGAGTATTCAAC 57.395 47.619 0.00 0.00 0.00 3.18
2619 2696 2.773993 GGTGGAGTATTCAACCCGAA 57.226 50.000 0.05 0.00 41.02 4.30
2620 2697 3.277142 GGTGGAGTATTCAACCCGAAT 57.723 47.619 0.05 0.00 46.36 3.34
2621 2698 3.617284 GGTGGAGTATTCAACCCGAATT 58.383 45.455 0.05 0.00 41.83 2.17
2622 2699 4.014406 GGTGGAGTATTCAACCCGAATTT 58.986 43.478 0.05 0.00 41.83 1.82
2623 2700 5.187687 GGTGGAGTATTCAACCCGAATTTA 58.812 41.667 0.05 0.00 41.83 1.40
2624 2701 5.826208 GGTGGAGTATTCAACCCGAATTTAT 59.174 40.000 0.05 0.00 41.83 1.40
2625 2702 6.993902 GGTGGAGTATTCAACCCGAATTTATA 59.006 38.462 0.05 0.00 41.83 0.98
2626 2703 7.172703 GGTGGAGTATTCAACCCGAATTTATAG 59.827 40.741 0.05 0.00 41.83 1.31
2627 2704 7.929785 GTGGAGTATTCAACCCGAATTTATAGA 59.070 37.037 0.00 0.00 41.83 1.98
2628 2705 8.656806 TGGAGTATTCAACCCGAATTTATAGAT 58.343 33.333 0.00 0.00 41.83 1.98
2629 2706 9.503399 GGAGTATTCAACCCGAATTTATAGATT 57.497 33.333 0.00 0.00 41.83 2.40
2642 2719 8.433421 GAATTTATAGATTCGACACAAGGGAA 57.567 34.615 0.61 0.00 0.00 3.97
2643 2720 8.438676 AATTTATAGATTCGACACAAGGGAAG 57.561 34.615 0.00 0.00 0.00 3.46
2644 2721 2.100605 AGATTCGACACAAGGGAAGC 57.899 50.000 0.00 0.00 0.00 3.86
2645 2722 1.087501 GATTCGACACAAGGGAAGCC 58.912 55.000 0.00 0.00 0.00 4.35
2646 2723 0.400213 ATTCGACACAAGGGAAGCCA 59.600 50.000 0.00 0.00 0.00 4.75
2647 2724 0.181587 TTCGACACAAGGGAAGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
2648 2725 0.181587 TCGACACAAGGGAAGCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
2649 2726 0.593128 CGACACAAGGGAAGCCAAAG 59.407 55.000 0.00 0.00 0.00 2.77
2650 2727 1.813862 CGACACAAGGGAAGCCAAAGA 60.814 52.381 0.00 0.00 0.00 2.52
2651 2728 2.306847 GACACAAGGGAAGCCAAAGAA 58.693 47.619 0.00 0.00 0.00 2.52
2652 2729 2.893489 GACACAAGGGAAGCCAAAGAAT 59.107 45.455 0.00 0.00 0.00 2.40
2653 2730 4.079253 GACACAAGGGAAGCCAAAGAATA 58.921 43.478 0.00 0.00 0.00 1.75
2654 2731 4.677182 ACACAAGGGAAGCCAAAGAATAT 58.323 39.130 0.00 0.00 0.00 1.28
2655 2732 5.086621 ACACAAGGGAAGCCAAAGAATATT 58.913 37.500 0.00 0.00 0.00 1.28
2656 2733 5.543790 ACACAAGGGAAGCCAAAGAATATTT 59.456 36.000 0.00 0.00 0.00 1.40
2657 2734 5.870978 CACAAGGGAAGCCAAAGAATATTTG 59.129 40.000 0.00 0.00 0.00 2.32
2658 2735 5.779771 ACAAGGGAAGCCAAAGAATATTTGA 59.220 36.000 1.46 0.00 0.00 2.69
2659 2736 6.269769 ACAAGGGAAGCCAAAGAATATTTGAA 59.730 34.615 1.46 0.00 0.00 2.69
2660 2737 6.535963 AGGGAAGCCAAAGAATATTTGAAG 57.464 37.500 1.46 0.00 0.00 3.02
2661 2738 5.423290 AGGGAAGCCAAAGAATATTTGAAGG 59.577 40.000 1.46 0.00 0.00 3.46
2662 2739 5.187772 GGGAAGCCAAAGAATATTTGAAGGT 59.812 40.000 1.46 0.00 0.00 3.50
2663 2740 6.379988 GGGAAGCCAAAGAATATTTGAAGGTA 59.620 38.462 1.46 0.00 0.00 3.08
2664 2741 7.069950 GGGAAGCCAAAGAATATTTGAAGGTAT 59.930 37.037 1.46 0.00 0.00 2.73
2665 2742 8.478066 GGAAGCCAAAGAATATTTGAAGGTATT 58.522 33.333 1.46 0.00 0.00 1.89
2668 2745 8.633561 AGCCAAAGAATATTTGAAGGTATTAGC 58.366 33.333 1.46 0.00 0.00 3.09
2669 2746 8.413229 GCCAAAGAATATTTGAAGGTATTAGCA 58.587 33.333 1.46 0.00 0.00 3.49
2670 2747 9.956720 CCAAAGAATATTTGAAGGTATTAGCAG 57.043 33.333 1.46 0.00 0.00 4.24
2671 2748 9.455847 CAAAGAATATTTGAAGGTATTAGCAGC 57.544 33.333 0.00 0.00 0.00 5.25
2672 2749 8.986929 AAGAATATTTGAAGGTATTAGCAGCT 57.013 30.769 0.00 0.00 0.00 4.24
2673 2750 8.388484 AGAATATTTGAAGGTATTAGCAGCTG 57.612 34.615 10.11 10.11 0.00 4.24
2674 2751 8.213679 AGAATATTTGAAGGTATTAGCAGCTGA 58.786 33.333 20.43 0.00 0.00 4.26
2675 2752 7.976135 ATATTTGAAGGTATTAGCAGCTGAG 57.024 36.000 20.43 0.00 0.00 3.35
2676 2753 4.826274 TTGAAGGTATTAGCAGCTGAGT 57.174 40.909 20.43 6.02 0.00 3.41
2677 2754 4.826274 TGAAGGTATTAGCAGCTGAGTT 57.174 40.909 20.43 4.34 0.00 3.01
2678 2755 4.507710 TGAAGGTATTAGCAGCTGAGTTG 58.492 43.478 20.43 0.00 0.00 3.16
2679 2756 4.020218 TGAAGGTATTAGCAGCTGAGTTGT 60.020 41.667 20.43 0.85 0.00 3.32
2680 2757 4.130286 AGGTATTAGCAGCTGAGTTGTC 57.870 45.455 20.43 0.00 0.00 3.18
2681 2758 3.515502 AGGTATTAGCAGCTGAGTTGTCA 59.484 43.478 20.43 0.00 0.00 3.58
2682 2759 4.020218 AGGTATTAGCAGCTGAGTTGTCAA 60.020 41.667 20.43 0.00 30.14 3.18
2683 2760 4.878397 GGTATTAGCAGCTGAGTTGTCAAT 59.122 41.667 20.43 7.37 30.14 2.57
2684 2761 5.355350 GGTATTAGCAGCTGAGTTGTCAATT 59.645 40.000 20.43 0.00 30.14 2.32
2685 2762 5.557891 ATTAGCAGCTGAGTTGTCAATTC 57.442 39.130 20.43 1.25 30.14 2.17
2686 2763 2.854963 AGCAGCTGAGTTGTCAATTCA 58.145 42.857 20.43 10.07 30.14 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 294 4.697352 GTGATACCAACTCTCACATGCTTT 59.303 41.667 0.00 0.00 39.24 3.51
315 319 4.383118 CCGTGGGAAGATGTGAAAGTATCT 60.383 45.833 0.00 0.00 35.25 1.98
367 373 0.690762 ACTACGGGAGTTTGGTGCAT 59.309 50.000 0.00 0.00 43.33 3.96
417 423 9.759259 CGTTGATGTTATGTAAATATGCTATGG 57.241 33.333 0.00 0.00 0.00 2.74
442 449 9.127006 TGATTTGAAAATTTGTGACATGATACG 57.873 29.630 0.00 0.00 0.00 3.06
528 535 5.104941 GGCCAAATCTAAAGCCCAACTTATT 60.105 40.000 0.00 0.00 37.75 1.40
589 598 4.952071 TCAAAATTCAGAACATTGCCCA 57.048 36.364 5.29 0.00 0.00 5.36
634 673 8.143835 TCTATATCACGTTGACACATCATCAAT 58.856 33.333 0.00 0.00 38.31 2.57
650 689 9.490663 GAACAGGAAACAAAATTCTATATCACG 57.509 33.333 0.00 0.00 0.00 4.35
686 725 8.879759 CACCAGATGTTCGTAGTACATTTTAAT 58.120 33.333 0.38 0.00 36.41 1.40
727 766 2.095919 GTCTTTGTGGTGTTATCGGTGC 60.096 50.000 0.00 0.00 0.00 5.01
748 787 2.488355 ACGTATCCGGTGCGTCTG 59.512 61.111 12.69 0.00 46.41 3.51
764 803 1.302271 GTGTCGTGGGAAGGGGAAC 60.302 63.158 0.00 0.00 0.00 3.62
795 834 5.263599 TCCTAGTTGTGCCAAATGATCAAT 58.736 37.500 0.00 0.00 0.00 2.57
796 835 4.661222 TCCTAGTTGTGCCAAATGATCAA 58.339 39.130 0.00 0.00 0.00 2.57
797 836 4.299586 TCCTAGTTGTGCCAAATGATCA 57.700 40.909 0.00 0.00 0.00 2.92
798 837 4.439289 GCTTCCTAGTTGTGCCAAATGATC 60.439 45.833 0.00 0.00 0.00 2.92
799 838 3.445096 GCTTCCTAGTTGTGCCAAATGAT 59.555 43.478 0.00 0.00 0.00 2.45
800 839 2.819608 GCTTCCTAGTTGTGCCAAATGA 59.180 45.455 0.00 0.00 0.00 2.57
801 840 2.821969 AGCTTCCTAGTTGTGCCAAATG 59.178 45.455 0.00 0.00 0.00 2.32
802 841 2.821969 CAGCTTCCTAGTTGTGCCAAAT 59.178 45.455 0.00 0.00 0.00 2.32
803 842 2.229792 CAGCTTCCTAGTTGTGCCAAA 58.770 47.619 0.00 0.00 0.00 3.28
804 843 1.896220 CAGCTTCCTAGTTGTGCCAA 58.104 50.000 0.00 0.00 0.00 4.52
805 844 0.606401 GCAGCTTCCTAGTTGTGCCA 60.606 55.000 0.00 0.00 35.28 4.92
806 845 0.322008 AGCAGCTTCCTAGTTGTGCC 60.322 55.000 0.00 0.00 35.28 5.01
807 846 0.801251 CAGCAGCTTCCTAGTTGTGC 59.199 55.000 0.00 0.00 35.28 4.57
808 847 0.801251 GCAGCAGCTTCCTAGTTGTG 59.199 55.000 0.00 0.00 35.28 3.33
809 848 3.239861 GCAGCAGCTTCCTAGTTGT 57.760 52.632 0.00 0.00 35.28 3.32
820 859 3.360249 TTTTTGAGAGAAAGCAGCAGC 57.640 42.857 0.00 0.00 42.56 5.25
882 940 1.803519 CTGAGTCGCGTGGAGAAGC 60.804 63.158 5.77 0.00 0.00 3.86
931 990 1.552792 AGAGGAGCTGCTGGTTTCTAC 59.447 52.381 14.48 0.00 0.00 2.59
943 1002 0.261696 GGAGGGAAGAGAGAGGAGCT 59.738 60.000 0.00 0.00 0.00 4.09
1009 1069 1.066587 GGAGGACGAAGGCGAGATG 59.933 63.158 0.00 0.00 41.64 2.90
1041 1101 2.413765 GACGAGAAGGCGGCTAGG 59.586 66.667 13.71 4.35 36.09 3.02
1287 1347 3.774959 GATCTGCGCGACGGTGGAT 62.775 63.158 12.10 2.84 0.00 3.41
1353 1413 1.066908 ACGTTGAACCCGTTTACGAGA 59.933 47.619 17.44 0.00 43.02 4.04
1584 1647 1.747924 CAGAGGACGATCTTGAGCTCA 59.252 52.381 13.74 13.74 0.00 4.26
1718 1781 0.997196 CGTAGAAGTACGGCAAAGCC 59.003 55.000 0.00 0.00 46.93 4.35
1751 1814 6.485393 GCTTACGAACTCTTAACTCTACGAT 58.515 40.000 0.00 0.00 0.00 3.73
1757 1820 6.918043 TTAACGCTTACGAACTCTTAACTC 57.082 37.500 0.00 0.00 43.93 3.01
1772 1843 3.081710 ACAGGGCCTTAATTAACGCTT 57.918 42.857 1.32 5.49 0.00 4.68
1787 1858 0.541392 TGATGGATGTCCGAACAGGG 59.459 55.000 0.00 0.00 39.20 4.45
1788 1859 1.482182 TCTGATGGATGTCCGAACAGG 59.518 52.381 14.86 0.00 39.20 4.00
1789 1860 2.967599 TCTGATGGATGTCCGAACAG 57.032 50.000 11.15 11.15 39.20 3.16
1790 1861 3.183793 CATCTGATGGATGTCCGAACA 57.816 47.619 9.82 0.00 44.88 3.18
1799 1870 5.614308 TCTAATTTCACGCATCTGATGGAT 58.386 37.500 18.60 0.00 34.51 3.41
1800 1871 5.022282 TCTAATTTCACGCATCTGATGGA 57.978 39.130 18.60 5.50 0.00 3.41
1801 1872 4.212847 CCTCTAATTTCACGCATCTGATGG 59.787 45.833 18.60 11.23 0.00 3.51
1802 1873 5.052481 TCCTCTAATTTCACGCATCTGATG 58.948 41.667 13.26 13.26 0.00 3.07
1803 1874 5.163364 ACTCCTCTAATTTCACGCATCTGAT 60.163 40.000 0.00 0.00 0.00 2.90
1804 1875 4.160439 ACTCCTCTAATTTCACGCATCTGA 59.840 41.667 0.00 0.00 0.00 3.27
1805 1876 4.437239 ACTCCTCTAATTTCACGCATCTG 58.563 43.478 0.00 0.00 0.00 2.90
1806 1877 4.744795 ACTCCTCTAATTTCACGCATCT 57.255 40.909 0.00 0.00 0.00 2.90
1807 1878 6.018669 CCTTAACTCCTCTAATTTCACGCATC 60.019 42.308 0.00 0.00 0.00 3.91
1808 1879 5.817816 CCTTAACTCCTCTAATTTCACGCAT 59.182 40.000 0.00 0.00 0.00 4.73
1809 1880 5.046878 TCCTTAACTCCTCTAATTTCACGCA 60.047 40.000 0.00 0.00 0.00 5.24
1810 1881 5.416947 TCCTTAACTCCTCTAATTTCACGC 58.583 41.667 0.00 0.00 0.00 5.34
1811 1882 5.520649 GCTCCTTAACTCCTCTAATTTCACG 59.479 44.000 0.00 0.00 0.00 4.35
1812 1883 6.314152 GTGCTCCTTAACTCCTCTAATTTCAC 59.686 42.308 0.00 0.00 0.00 3.18
1813 1884 6.407202 GTGCTCCTTAACTCCTCTAATTTCA 58.593 40.000 0.00 0.00 0.00 2.69
1814 1885 5.818336 GGTGCTCCTTAACTCCTCTAATTTC 59.182 44.000 0.00 0.00 0.00 2.17
1815 1886 5.489278 AGGTGCTCCTTAACTCCTCTAATTT 59.511 40.000 0.18 0.00 42.12 1.82
1816 1887 5.033522 AGGTGCTCCTTAACTCCTCTAATT 58.966 41.667 0.18 0.00 42.12 1.40
1817 1888 4.625963 AGGTGCTCCTTAACTCCTCTAAT 58.374 43.478 0.18 0.00 42.12 1.73
1818 1889 4.062490 AGGTGCTCCTTAACTCCTCTAA 57.938 45.455 0.18 0.00 42.12 2.10
1819 1890 3.759815 AGGTGCTCCTTAACTCCTCTA 57.240 47.619 0.18 0.00 42.12 2.43
1820 1891 2.632763 AGGTGCTCCTTAACTCCTCT 57.367 50.000 0.18 0.00 42.12 3.69
1821 1892 5.360649 AATTAGGTGCTCCTTAACTCCTC 57.639 43.478 13.50 0.00 42.12 3.71
1822 1893 5.780958 AAATTAGGTGCTCCTTAACTCCT 57.219 39.130 13.50 0.00 42.12 3.69
1823 1894 5.944007 TGAAAATTAGGTGCTCCTTAACTCC 59.056 40.000 13.50 0.37 42.12 3.85
1824 1895 7.175119 AGTTGAAAATTAGGTGCTCCTTAACTC 59.825 37.037 13.50 4.90 42.12 3.01
1825 1896 7.004691 AGTTGAAAATTAGGTGCTCCTTAACT 58.995 34.615 13.50 9.33 42.12 2.24
1826 1897 7.215719 AGTTGAAAATTAGGTGCTCCTTAAC 57.784 36.000 13.50 7.49 42.12 2.01
1827 1898 6.433093 GGAGTTGAAAATTAGGTGCTCCTTAA 59.567 38.462 13.50 5.98 42.12 1.85
1828 1899 5.944007 GGAGTTGAAAATTAGGTGCTCCTTA 59.056 40.000 13.50 4.00 42.12 2.69
1829 1900 4.767409 GGAGTTGAAAATTAGGTGCTCCTT 59.233 41.667 13.50 0.00 42.12 3.36
1831 1902 4.079253 TGGAGTTGAAAATTAGGTGCTCC 58.921 43.478 0.00 0.00 41.01 4.70
1832 1903 4.762251 ACTGGAGTTGAAAATTAGGTGCTC 59.238 41.667 0.00 0.00 0.00 4.26
1833 1904 4.729868 ACTGGAGTTGAAAATTAGGTGCT 58.270 39.130 0.00 0.00 0.00 4.40
1834 1905 6.759497 ATACTGGAGTTGAAAATTAGGTGC 57.241 37.500 0.00 0.00 0.00 5.01
1848 1919 8.852135 GCAGAGTTATAGACTAAATACTGGAGT 58.148 37.037 0.00 0.00 39.19 3.85
1849 1920 8.301002 GGCAGAGTTATAGACTAAATACTGGAG 58.699 40.741 0.00 0.00 39.19 3.86
1850 1921 7.040617 CGGCAGAGTTATAGACTAAATACTGGA 60.041 40.741 0.00 0.00 39.19 3.86
1851 1922 7.085116 CGGCAGAGTTATAGACTAAATACTGG 58.915 42.308 0.00 0.00 39.19 4.00
1852 1923 7.085116 CCGGCAGAGTTATAGACTAAATACTG 58.915 42.308 0.00 0.00 39.19 2.74
1853 1924 6.294620 GCCGGCAGAGTTATAGACTAAATACT 60.295 42.308 24.80 0.00 39.19 2.12
1854 1925 5.862860 GCCGGCAGAGTTATAGACTAAATAC 59.137 44.000 24.80 0.00 39.19 1.89
1855 1926 5.773680 AGCCGGCAGAGTTATAGACTAAATA 59.226 40.000 31.54 0.00 39.19 1.40
1856 1927 4.589374 AGCCGGCAGAGTTATAGACTAAAT 59.411 41.667 31.54 0.00 39.19 1.40
1857 1928 3.958798 AGCCGGCAGAGTTATAGACTAAA 59.041 43.478 31.54 0.00 39.19 1.85
1858 1929 3.563223 AGCCGGCAGAGTTATAGACTAA 58.437 45.455 31.54 0.00 39.19 2.24
1859 1930 3.147629 GAGCCGGCAGAGTTATAGACTA 58.852 50.000 31.54 0.00 39.19 2.59
1860 1931 1.957877 GAGCCGGCAGAGTTATAGACT 59.042 52.381 31.54 1.45 42.70 3.24
1861 1932 1.000052 GGAGCCGGCAGAGTTATAGAC 60.000 57.143 31.54 4.40 0.00 2.59
1862 1933 1.329256 GGAGCCGGCAGAGTTATAGA 58.671 55.000 31.54 0.00 0.00 1.98
1863 1934 0.039074 CGGAGCCGGCAGAGTTATAG 60.039 60.000 31.54 5.00 35.56 1.31
1864 1935 0.754217 ACGGAGCCGGCAGAGTTATA 60.754 55.000 31.54 0.00 44.69 0.98
1865 1936 2.058595 ACGGAGCCGGCAGAGTTAT 61.059 57.895 31.54 5.22 44.69 1.89
1866 1937 2.678934 ACGGAGCCGGCAGAGTTA 60.679 61.111 31.54 0.00 44.69 2.24
1867 1938 4.379243 CACGGAGCCGGCAGAGTT 62.379 66.667 31.54 7.13 44.69 3.01
1871 1942 4.899239 GATCCACGGAGCCGGCAG 62.899 72.222 31.54 21.56 44.69 4.85
1881 1952 1.152819 TCCTAGACCCGGATCCACG 60.153 63.158 13.41 2.75 0.00 4.94
1882 1953 1.465200 GCTCCTAGACCCGGATCCAC 61.465 65.000 13.41 0.00 0.00 4.02
1883 1954 1.152525 GCTCCTAGACCCGGATCCA 60.153 63.158 13.41 0.00 0.00 3.41
1884 1955 2.269529 CGCTCCTAGACCCGGATCC 61.270 68.421 0.73 0.00 0.00 3.36
1885 1956 2.269529 CCGCTCCTAGACCCGGATC 61.270 68.421 0.73 0.00 43.20 3.36
1886 1957 2.203509 CCGCTCCTAGACCCGGAT 60.204 66.667 0.73 0.00 43.20 4.18
1887 1958 3.414193 TCCGCTCCTAGACCCGGA 61.414 66.667 0.73 11.80 46.50 5.14
1888 1959 2.907917 CTCCGCTCCTAGACCCGG 60.908 72.222 0.00 0.00 41.97 5.73
1889 1960 2.907917 CCTCCGCTCCTAGACCCG 60.908 72.222 0.00 0.00 0.00 5.28
1890 1961 2.522193 CCCTCCGCTCCTAGACCC 60.522 72.222 0.00 0.00 0.00 4.46
1891 1962 1.829096 GTCCCTCCGCTCCTAGACC 60.829 68.421 0.00 0.00 0.00 3.85
1892 1963 0.820482 GAGTCCCTCCGCTCCTAGAC 60.820 65.000 0.00 0.00 0.00 2.59
1893 1964 1.532728 GAGTCCCTCCGCTCCTAGA 59.467 63.158 0.00 0.00 0.00 2.43
1894 1965 1.529713 GGAGTCCCTCCGCTCCTAG 60.530 68.421 0.00 0.00 45.78 3.02
1895 1966 2.601868 GGAGTCCCTCCGCTCCTA 59.398 66.667 0.00 0.00 45.78 2.94
1902 1973 0.246910 GAAGTGTTCGGAGTCCCTCC 59.753 60.000 2.80 0.00 46.44 4.30
1903 1974 0.246910 GGAAGTGTTCGGAGTCCCTC 59.753 60.000 2.80 0.00 0.00 4.30
1904 1975 0.178929 AGGAAGTGTTCGGAGTCCCT 60.179 55.000 2.80 0.00 0.00 4.20
1905 1976 1.553706 TAGGAAGTGTTCGGAGTCCC 58.446 55.000 2.80 0.00 0.00 4.46
1906 1977 2.561858 ACTTAGGAAGTGTTCGGAGTCC 59.438 50.000 0.00 0.00 41.01 3.85
1907 1978 3.938289 ACTTAGGAAGTGTTCGGAGTC 57.062 47.619 0.00 0.00 41.01 3.36
1917 1988 3.117663 TGAAAACTGGCCACTTAGGAAGT 60.118 43.478 0.00 0.00 44.06 3.01
1918 1989 3.486383 TGAAAACTGGCCACTTAGGAAG 58.514 45.455 0.00 0.00 41.22 3.46
1919 1990 3.586470 TGAAAACTGGCCACTTAGGAA 57.414 42.857 0.00 0.00 41.22 3.36
1920 1991 3.806949 ATGAAAACTGGCCACTTAGGA 57.193 42.857 0.00 0.00 41.22 2.94
1921 1992 4.331968 TGTATGAAAACTGGCCACTTAGG 58.668 43.478 0.00 0.00 41.84 2.69
1922 1993 5.957842 TTGTATGAAAACTGGCCACTTAG 57.042 39.130 0.00 0.00 0.00 2.18
1923 1994 6.266558 ACATTTGTATGAAAACTGGCCACTTA 59.733 34.615 0.00 0.00 35.65 2.24
1924 1995 5.070313 ACATTTGTATGAAAACTGGCCACTT 59.930 36.000 0.00 0.00 35.65 3.16
1925 1996 4.588528 ACATTTGTATGAAAACTGGCCACT 59.411 37.500 0.00 0.00 35.65 4.00
1926 1997 4.881920 ACATTTGTATGAAAACTGGCCAC 58.118 39.130 0.00 0.00 35.65 5.01
1967 2044 9.793259 AATTGTTCCAAGTTCTAGAGTTCATAA 57.207 29.630 0.00 0.00 0.00 1.90
2068 2145 0.681733 AGTGCGACTGTTGGAGATGT 59.318 50.000 0.00 0.00 0.00 3.06
2069 2146 1.354040 GAGTGCGACTGTTGGAGATG 58.646 55.000 0.00 0.00 0.00 2.90
2070 2147 0.109086 CGAGTGCGACTGTTGGAGAT 60.109 55.000 0.00 0.00 40.82 2.75
2071 2148 1.170290 TCGAGTGCGACTGTTGGAGA 61.170 55.000 0.00 0.00 42.51 3.71
2072 2149 1.285950 TCGAGTGCGACTGTTGGAG 59.714 57.895 0.00 0.00 42.51 3.86
2073 2150 3.439008 TCGAGTGCGACTGTTGGA 58.561 55.556 0.00 0.00 42.51 3.53
2081 2158 0.878416 CCCCAAAATTTCGAGTGCGA 59.122 50.000 0.00 0.00 46.33 5.10
2082 2159 0.596082 ACCCCAAAATTTCGAGTGCG 59.404 50.000 0.00 0.00 39.35 5.34
2083 2160 2.812358 AACCCCAAAATTTCGAGTGC 57.188 45.000 0.00 0.00 0.00 4.40
2084 2161 5.689961 CACTAAAACCCCAAAATTTCGAGTG 59.310 40.000 0.00 0.00 31.12 3.51
2085 2162 5.737922 GCACTAAAACCCCAAAATTTCGAGT 60.738 40.000 0.00 0.00 0.00 4.18
2086 2163 4.684242 GCACTAAAACCCCAAAATTTCGAG 59.316 41.667 0.00 0.00 0.00 4.04
2087 2164 4.623002 GCACTAAAACCCCAAAATTTCGA 58.377 39.130 0.00 0.00 0.00 3.71
2088 2165 3.427193 CGCACTAAAACCCCAAAATTTCG 59.573 43.478 0.00 0.00 0.00 3.46
2089 2166 3.185594 GCGCACTAAAACCCCAAAATTTC 59.814 43.478 0.30 0.00 0.00 2.17
2090 2167 3.135225 GCGCACTAAAACCCCAAAATTT 58.865 40.909 0.30 0.00 0.00 1.82
2091 2168 2.761559 GCGCACTAAAACCCCAAAATT 58.238 42.857 0.30 0.00 0.00 1.82
2092 2169 1.336424 CGCGCACTAAAACCCCAAAAT 60.336 47.619 8.75 0.00 0.00 1.82
2093 2170 0.030908 CGCGCACTAAAACCCCAAAA 59.969 50.000 8.75 0.00 0.00 2.44
2094 2171 1.655329 CGCGCACTAAAACCCCAAA 59.345 52.632 8.75 0.00 0.00 3.28
2095 2172 2.910345 GCGCGCACTAAAACCCCAA 61.910 57.895 29.10 0.00 0.00 4.12
2096 2173 3.358707 GCGCGCACTAAAACCCCA 61.359 61.111 29.10 0.00 0.00 4.96
2097 2174 4.454717 CGCGCGCACTAAAACCCC 62.455 66.667 32.61 0.00 0.00 4.95
2098 2175 1.899521 TTACGCGCGCACTAAAACCC 61.900 55.000 32.58 0.00 0.00 4.11
2099 2176 0.786806 GTTACGCGCGCACTAAAACC 60.787 55.000 32.58 9.93 0.00 3.27
2100 2177 0.786806 GGTTACGCGCGCACTAAAAC 60.787 55.000 32.58 23.43 0.00 2.43
2101 2178 1.492436 GGTTACGCGCGCACTAAAA 59.508 52.632 32.58 13.83 0.00 1.52
2102 2179 2.718791 CGGTTACGCGCGCACTAAA 61.719 57.895 32.58 15.71 0.00 1.85
2103 2180 3.173906 CGGTTACGCGCGCACTAA 61.174 61.111 32.58 21.65 0.00 2.24
2151 2228 2.265965 GAAATCTTTTTGCCGCGCGC 62.266 55.000 27.36 23.91 38.31 6.86
2152 2229 1.001240 TGAAATCTTTTTGCCGCGCG 61.001 50.000 25.67 25.67 0.00 6.86
2153 2230 0.710017 CTGAAATCTTTTTGCCGCGC 59.290 50.000 0.00 0.00 0.00 6.86
2154 2231 0.710017 GCTGAAATCTTTTTGCCGCG 59.290 50.000 0.00 0.00 0.00 6.46
2155 2232 0.710017 CGCTGAAATCTTTTTGCCGC 59.290 50.000 0.00 0.00 0.00 6.53
2156 2233 0.710017 GCGCTGAAATCTTTTTGCCG 59.290 50.000 0.00 0.00 0.00 5.69
2157 2234 0.710017 CGCGCTGAAATCTTTTTGCC 59.290 50.000 5.56 0.00 0.00 4.52
2158 2235 1.123038 CACGCGCTGAAATCTTTTTGC 59.877 47.619 5.73 0.00 0.00 3.68
2159 2236 2.384382 ACACGCGCTGAAATCTTTTTG 58.616 42.857 5.73 0.00 0.00 2.44
2160 2237 2.774439 ACACGCGCTGAAATCTTTTT 57.226 40.000 5.73 0.00 0.00 1.94
2161 2238 2.604614 GGAACACGCGCTGAAATCTTTT 60.605 45.455 5.73 0.00 0.00 2.27
2162 2239 1.069227 GGAACACGCGCTGAAATCTTT 60.069 47.619 5.73 0.00 0.00 2.52
2163 2240 0.517316 GGAACACGCGCTGAAATCTT 59.483 50.000 5.73 0.00 0.00 2.40
2164 2241 1.626654 CGGAACACGCGCTGAAATCT 61.627 55.000 5.73 0.00 34.82 2.40
2165 2242 1.225745 CGGAACACGCGCTGAAATC 60.226 57.895 5.73 5.82 34.82 2.17
2166 2243 1.225376 TTCGGAACACGCGCTGAAAT 61.225 50.000 5.73 0.00 43.86 2.17
2167 2244 1.429927 TTTCGGAACACGCGCTGAAA 61.430 50.000 5.73 10.24 43.86 2.69
2168 2245 1.883544 TTTCGGAACACGCGCTGAA 60.884 52.632 5.73 3.47 43.86 3.02
2169 2246 2.279584 TTTCGGAACACGCGCTGA 60.280 55.556 5.73 0.00 43.86 4.26
2170 2247 2.127758 GTTTCGGAACACGCGCTG 60.128 61.111 5.73 6.58 43.86 5.18
2171 2248 3.698463 CGTTTCGGAACACGCGCT 61.698 61.111 5.73 0.00 43.86 5.92
2175 2252 1.131826 GATGGCGTTTCGGAACACG 59.868 57.895 7.49 15.95 46.11 4.49
2176 2253 0.442699 GAGATGGCGTTTCGGAACAC 59.557 55.000 7.49 0.00 35.44 3.32
2177 2254 1.011968 CGAGATGGCGTTTCGGAACA 61.012 55.000 11.47 0.00 35.44 3.18
2178 2255 1.708027 CGAGATGGCGTTTCGGAAC 59.292 57.895 11.47 0.00 0.00 3.62
2179 2256 2.098233 GCGAGATGGCGTTTCGGAA 61.098 57.895 19.51 0.00 35.05 4.30
2180 2257 2.508439 GCGAGATGGCGTTTCGGA 60.508 61.111 19.51 0.00 35.05 4.55
2188 2265 1.772063 AATAAACGGCGCGAGATGGC 61.772 55.000 12.10 0.00 0.00 4.40
2189 2266 0.655733 AAATAAACGGCGCGAGATGG 59.344 50.000 12.10 0.00 0.00 3.51
2190 2267 1.332904 GGAAATAAACGGCGCGAGATG 60.333 52.381 12.10 0.00 0.00 2.90
2191 2268 0.935196 GGAAATAAACGGCGCGAGAT 59.065 50.000 12.10 0.00 0.00 2.75
2192 2269 0.108520 AGGAAATAAACGGCGCGAGA 60.109 50.000 12.10 0.00 0.00 4.04
2193 2270 0.026285 CAGGAAATAAACGGCGCGAG 59.974 55.000 12.10 5.13 0.00 5.03
2194 2271 1.363145 CCAGGAAATAAACGGCGCGA 61.363 55.000 12.10 0.00 0.00 5.87
2195 2272 1.061887 CCAGGAAATAAACGGCGCG 59.938 57.895 6.90 0.00 0.00 6.86
2196 2273 1.226575 GCCAGGAAATAAACGGCGC 60.227 57.895 6.90 0.00 32.14 6.53
2197 2274 1.431845 GGCCAGGAAATAAACGGCG 59.568 57.895 4.80 4.80 43.93 6.46
2198 2275 1.813859 GGGCCAGGAAATAAACGGC 59.186 57.895 4.39 0.00 42.21 5.68
2199 2276 2.000215 GCGGGCCAGGAAATAAACGG 62.000 60.000 4.39 0.00 0.00 4.44
2200 2277 1.029947 AGCGGGCCAGGAAATAAACG 61.030 55.000 4.39 0.00 0.00 3.60
2201 2278 0.738975 GAGCGGGCCAGGAAATAAAC 59.261 55.000 4.39 0.00 0.00 2.01
2202 2279 0.395173 GGAGCGGGCCAGGAAATAAA 60.395 55.000 4.39 0.00 0.00 1.40
2203 2280 1.226262 GGAGCGGGCCAGGAAATAA 59.774 57.895 4.39 0.00 0.00 1.40
2204 2281 1.692749 AGGAGCGGGCCAGGAAATA 60.693 57.895 4.39 0.00 0.00 1.40
2205 2282 3.017581 AGGAGCGGGCCAGGAAAT 61.018 61.111 4.39 0.00 0.00 2.17
2206 2283 4.033776 CAGGAGCGGGCCAGGAAA 62.034 66.667 4.39 0.00 0.00 3.13
2282 2359 4.680237 TGAGGGGTTGACTGCGCG 62.680 66.667 0.00 0.00 0.00 6.86
2283 2360 3.050275 GTGAGGGGTTGACTGCGC 61.050 66.667 0.00 0.00 0.00 6.09
2284 2361 2.358737 GGTGAGGGGTTGACTGCG 60.359 66.667 0.00 0.00 0.00 5.18
2285 2362 2.034221 GGGTGAGGGGTTGACTGC 59.966 66.667 0.00 0.00 0.00 4.40
2286 2363 1.427072 AAGGGGTGAGGGGTTGACTG 61.427 60.000 0.00 0.00 0.00 3.51
2287 2364 1.072930 AAGGGGTGAGGGGTTGACT 60.073 57.895 0.00 0.00 0.00 3.41
2288 2365 1.379146 GAAGGGGTGAGGGGTTGAC 59.621 63.158 0.00 0.00 0.00 3.18
2289 2366 1.850755 GGAAGGGGTGAGGGGTTGA 60.851 63.158 0.00 0.00 0.00 3.18
2290 2367 0.549169 TAGGAAGGGGTGAGGGGTTG 60.549 60.000 0.00 0.00 0.00 3.77
2291 2368 0.549413 GTAGGAAGGGGTGAGGGGTT 60.549 60.000 0.00 0.00 0.00 4.11
2292 2369 1.082392 GTAGGAAGGGGTGAGGGGT 59.918 63.158 0.00 0.00 0.00 4.95
2293 2370 0.691413 GAGTAGGAAGGGGTGAGGGG 60.691 65.000 0.00 0.00 0.00 4.79
2294 2371 0.691413 GGAGTAGGAAGGGGTGAGGG 60.691 65.000 0.00 0.00 0.00 4.30
2295 2372 0.691413 GGGAGTAGGAAGGGGTGAGG 60.691 65.000 0.00 0.00 0.00 3.86
2296 2373 1.043673 CGGGAGTAGGAAGGGGTGAG 61.044 65.000 0.00 0.00 0.00 3.51
2297 2374 1.001248 CGGGAGTAGGAAGGGGTGA 59.999 63.158 0.00 0.00 0.00 4.02
2298 2375 2.732619 GCGGGAGTAGGAAGGGGTG 61.733 68.421 0.00 0.00 0.00 4.61
2299 2376 2.365237 GCGGGAGTAGGAAGGGGT 60.365 66.667 0.00 0.00 0.00 4.95
2300 2377 3.537874 CGCGGGAGTAGGAAGGGG 61.538 72.222 0.00 0.00 0.00 4.79
2301 2378 2.441532 TCGCGGGAGTAGGAAGGG 60.442 66.667 6.13 0.00 0.00 3.95
2302 2379 2.783288 GGTCGCGGGAGTAGGAAGG 61.783 68.421 6.13 0.00 0.00 3.46
2303 2380 2.783288 GGGTCGCGGGAGTAGGAAG 61.783 68.421 6.13 0.00 0.00 3.46
2304 2381 2.757099 GGGTCGCGGGAGTAGGAA 60.757 66.667 6.13 0.00 0.00 3.36
2305 2382 4.828296 GGGGTCGCGGGAGTAGGA 62.828 72.222 6.13 0.00 0.00 2.94
2306 2383 4.835891 AGGGGTCGCGGGAGTAGG 62.836 72.222 6.13 0.00 0.00 3.18
2307 2384 3.217743 GAGGGGTCGCGGGAGTAG 61.218 72.222 6.13 0.00 0.00 2.57
2308 2385 4.828296 GGAGGGGTCGCGGGAGTA 62.828 72.222 6.13 0.00 0.00 2.59
2327 2404 2.124901 TAGGGTTTGCGGCGATGG 60.125 61.111 12.98 0.00 0.00 3.51
2328 2405 2.823829 GCTAGGGTTTGCGGCGATG 61.824 63.158 12.98 0.00 0.00 3.84
2329 2406 2.513897 GCTAGGGTTTGCGGCGAT 60.514 61.111 12.98 0.00 0.00 4.58
2341 2418 1.376812 AAAAACTCCCCGCGCTAGG 60.377 57.895 5.56 5.96 0.00 3.02
2342 2419 1.794222 CAAAAACTCCCCGCGCTAG 59.206 57.895 5.56 0.00 0.00 3.42
2343 2420 2.329614 GCAAAAACTCCCCGCGCTA 61.330 57.895 5.56 0.00 0.00 4.26
2344 2421 3.670377 GCAAAAACTCCCCGCGCT 61.670 61.111 5.56 0.00 0.00 5.92
2345 2422 3.207547 AAGCAAAAACTCCCCGCGC 62.208 57.895 0.00 0.00 0.00 6.86
2346 2423 1.081442 GAAGCAAAAACTCCCCGCG 60.081 57.895 0.00 0.00 0.00 6.46
2347 2424 1.081442 CGAAGCAAAAACTCCCCGC 60.081 57.895 0.00 0.00 0.00 6.13
2371 2448 2.749441 GCTTGGAGGAGCACTGGC 60.749 66.667 0.00 0.00 42.25 4.85
2378 2455 3.335356 ATGCCGGTGCTTGGAGGAG 62.335 63.158 1.90 0.00 38.71 3.69
2379 2456 3.329542 GATGCCGGTGCTTGGAGGA 62.330 63.158 1.90 0.00 38.71 3.71
2380 2457 2.825836 GATGCCGGTGCTTGGAGG 60.826 66.667 1.90 0.00 38.71 4.30
2381 2458 3.197790 CGATGCCGGTGCTTGGAG 61.198 66.667 1.90 0.00 38.71 3.86
2394 2471 4.101790 AAAAGGCCGTGCGCGATG 62.102 61.111 23.45 6.37 41.33 3.84
2395 2472 3.799755 GAAAAGGCCGTGCGCGAT 61.800 61.111 23.45 3.43 41.33 4.58
2397 2474 4.101790 ATGAAAAGGCCGTGCGCG 62.102 61.111 13.88 13.88 38.94 6.86
2398 2475 2.504681 CATGAAAAGGCCGTGCGC 60.505 61.111 0.00 0.00 0.00 6.09
2399 2476 2.504681 GCATGAAAAGGCCGTGCG 60.505 61.111 0.00 0.00 36.90 5.34
2400 2477 2.125952 GGCATGAAAAGGCCGTGC 60.126 61.111 0.00 2.36 43.71 5.34
2404 2481 3.381136 TGGCGGCATGAAAAGGCC 61.381 61.111 7.97 0.00 46.80 5.19
2405 2482 2.125952 GTGGCGGCATGAAAAGGC 60.126 61.111 17.19 0.00 0.00 4.35
2406 2483 2.179018 CGTGGCGGCATGAAAAGG 59.821 61.111 25.82 0.00 0.00 3.11
2407 2484 2.179018 CCGTGGCGGCATGAAAAG 59.821 61.111 30.78 11.48 41.17 2.27
2471 2548 3.649277 CTTCGAGAGGGGGCACGTG 62.649 68.421 12.28 12.28 0.00 4.49
2472 2549 3.382832 CTTCGAGAGGGGGCACGT 61.383 66.667 0.00 0.00 0.00 4.49
2473 2550 4.821589 GCTTCGAGAGGGGGCACG 62.822 72.222 0.00 0.00 0.00 5.34
2474 2551 3.378399 GAGCTTCGAGAGGGGGCAC 62.378 68.421 0.00 0.00 0.00 5.01
2475 2552 3.077556 GAGCTTCGAGAGGGGGCA 61.078 66.667 0.00 0.00 0.00 5.36
2476 2553 3.855853 GGAGCTTCGAGAGGGGGC 61.856 72.222 0.00 0.00 0.00 5.80
2477 2554 3.157949 GGGAGCTTCGAGAGGGGG 61.158 72.222 0.00 0.00 0.00 5.40
2478 2555 1.553690 TTTGGGAGCTTCGAGAGGGG 61.554 60.000 0.00 0.00 0.00 4.79
2479 2556 0.543749 ATTTGGGAGCTTCGAGAGGG 59.456 55.000 0.00 0.00 0.00 4.30
2480 2557 1.661341 CATTTGGGAGCTTCGAGAGG 58.339 55.000 0.00 0.00 0.00 3.69
2481 2558 1.012841 GCATTTGGGAGCTTCGAGAG 58.987 55.000 0.00 0.00 0.00 3.20
2482 2559 0.740868 CGCATTTGGGAGCTTCGAGA 60.741 55.000 0.00 0.00 0.00 4.04
2483 2560 1.709147 CCGCATTTGGGAGCTTCGAG 61.709 60.000 0.00 0.00 0.00 4.04
2484 2561 1.745115 CCGCATTTGGGAGCTTCGA 60.745 57.895 0.00 0.00 0.00 3.71
2485 2562 2.040544 ACCGCATTTGGGAGCTTCG 61.041 57.895 0.00 0.00 0.00 3.79
2486 2563 1.508088 CACCGCATTTGGGAGCTTC 59.492 57.895 0.00 0.00 0.00 3.86
2487 2564 2.639327 GCACCGCATTTGGGAGCTT 61.639 57.895 0.00 0.00 0.00 3.74
2488 2565 3.064324 GCACCGCATTTGGGAGCT 61.064 61.111 0.00 0.00 0.00 4.09
2489 2566 4.481112 CGCACCGCATTTGGGAGC 62.481 66.667 0.00 0.00 0.00 4.70
2490 2567 3.814268 CCGCACCGCATTTGGGAG 61.814 66.667 0.00 0.00 0.00 4.30
2500 2577 4.398598 CCTTTTTCGCCCGCACCG 62.399 66.667 0.00 0.00 0.00 4.94
2501 2578 4.050934 CCCTTTTTCGCCCGCACC 62.051 66.667 0.00 0.00 0.00 5.01
2502 2579 4.717629 GCCCTTTTTCGCCCGCAC 62.718 66.667 0.00 0.00 0.00 5.34
2504 2581 3.914605 CTTGCCCTTTTTCGCCCGC 62.915 63.158 0.00 0.00 0.00 6.13
2505 2582 2.258286 CTTGCCCTTTTTCGCCCG 59.742 61.111 0.00 0.00 0.00 6.13
2506 2583 2.207229 ACCTTGCCCTTTTTCGCCC 61.207 57.895 0.00 0.00 0.00 6.13
2507 2584 1.006220 CACCTTGCCCTTTTTCGCC 60.006 57.895 0.00 0.00 0.00 5.54
2508 2585 0.318699 GACACCTTGCCCTTTTTCGC 60.319 55.000 0.00 0.00 0.00 4.70
2509 2586 0.313987 GGACACCTTGCCCTTTTTCG 59.686 55.000 0.00 0.00 0.00 3.46
2510 2587 0.313987 CGGACACCTTGCCCTTTTTC 59.686 55.000 0.00 0.00 0.00 2.29
2511 2588 1.744320 GCGGACACCTTGCCCTTTTT 61.744 55.000 0.00 0.00 0.00 1.94
2512 2589 2.200337 GCGGACACCTTGCCCTTTT 61.200 57.895 0.00 0.00 0.00 2.27
2513 2590 2.597510 GCGGACACCTTGCCCTTT 60.598 61.111 0.00 0.00 0.00 3.11
2517 2594 3.423154 CTTCGCGGACACCTTGCC 61.423 66.667 6.13 0.00 0.00 4.52
2518 2595 1.901650 CTTCTTCGCGGACACCTTGC 61.902 60.000 6.13 0.00 0.00 4.01
2519 2596 0.319555 TCTTCTTCGCGGACACCTTG 60.320 55.000 6.13 0.00 0.00 3.61
2520 2597 0.391597 TTCTTCTTCGCGGACACCTT 59.608 50.000 6.13 0.00 0.00 3.50
2521 2598 0.319641 GTTCTTCTTCGCGGACACCT 60.320 55.000 6.13 0.00 0.00 4.00
2522 2599 0.599204 TGTTCTTCTTCGCGGACACC 60.599 55.000 6.13 0.00 0.00 4.16
2523 2600 1.192534 CTTGTTCTTCTTCGCGGACAC 59.807 52.381 6.13 0.00 0.00 3.67
2524 2601 1.497991 CTTGTTCTTCTTCGCGGACA 58.502 50.000 6.13 0.00 0.00 4.02
2525 2602 0.790814 CCTTGTTCTTCTTCGCGGAC 59.209 55.000 6.13 0.00 0.00 4.79
2526 2603 0.391597 ACCTTGTTCTTCTTCGCGGA 59.608 50.000 6.13 0.00 0.00 5.54
2527 2604 0.512952 CACCTTGTTCTTCTTCGCGG 59.487 55.000 6.13 0.00 0.00 6.46
2528 2605 0.512952 CCACCTTGTTCTTCTTCGCG 59.487 55.000 0.00 0.00 0.00 5.87
2529 2606 0.238553 GCCACCTTGTTCTTCTTCGC 59.761 55.000 0.00 0.00 0.00 4.70
2530 2607 0.512952 CGCCACCTTGTTCTTCTTCG 59.487 55.000 0.00 0.00 0.00 3.79
2531 2608 0.875059 CCGCCACCTTGTTCTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
2532 2609 0.472471 TCCGCCACCTTGTTCTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
2533 2610 0.250338 GTCCGCCACCTTGTTCTTCT 60.250 55.000 0.00 0.00 0.00 2.85
2534 2611 1.566018 CGTCCGCCACCTTGTTCTTC 61.566 60.000 0.00 0.00 0.00 2.87
2535 2612 1.597027 CGTCCGCCACCTTGTTCTT 60.597 57.895 0.00 0.00 0.00 2.52
2536 2613 2.030562 CGTCCGCCACCTTGTTCT 59.969 61.111 0.00 0.00 0.00 3.01
2537 2614 3.047877 CCGTCCGCCACCTTGTTC 61.048 66.667 0.00 0.00 0.00 3.18
2549 2626 0.179054 GGGTTATCAAGGAGCCGTCC 60.179 60.000 0.00 0.00 44.33 4.79
2550 2627 0.539986 TGGGTTATCAAGGAGCCGTC 59.460 55.000 0.00 0.00 36.23 4.79
2551 2628 0.252197 GTGGGTTATCAAGGAGCCGT 59.748 55.000 0.00 0.00 36.23 5.68
2552 2629 0.251916 TGTGGGTTATCAAGGAGCCG 59.748 55.000 0.00 0.00 36.23 5.52
2553 2630 2.290960 ACTTGTGGGTTATCAAGGAGCC 60.291 50.000 9.21 0.00 43.40 4.70
2554 2631 3.073274 ACTTGTGGGTTATCAAGGAGC 57.927 47.619 9.21 0.00 43.40 4.70
2555 2632 6.986817 CACTATACTTGTGGGTTATCAAGGAG 59.013 42.308 9.21 6.20 43.40 3.69
2556 2633 6.884832 CACTATACTTGTGGGTTATCAAGGA 58.115 40.000 9.21 1.67 43.40 3.36
2557 2634 7.420214 ATCCACTATACTTGTGGGTTATCAAGG 60.420 40.741 12.22 0.00 45.77 3.61
2558 2635 7.509546 ATCCACTATACTTGTGGGTTATCAAG 58.490 38.462 12.22 0.00 45.77 3.02
2559 2636 7.446106 ATCCACTATACTTGTGGGTTATCAA 57.554 36.000 12.22 0.00 45.77 2.57
2568 2645 5.412594 ACTGTTGCAATCCACTATACTTGTG 59.587 40.000 0.59 0.00 35.39 3.33
2569 2646 5.560724 ACTGTTGCAATCCACTATACTTGT 58.439 37.500 0.59 0.00 0.00 3.16
2570 2647 6.500684 AACTGTTGCAATCCACTATACTTG 57.499 37.500 0.59 0.00 0.00 3.16
2571 2648 7.524717 AAAACTGTTGCAATCCACTATACTT 57.475 32.000 0.59 0.00 0.00 2.24
2572 2649 6.128282 CGAAAACTGTTGCAATCCACTATACT 60.128 38.462 0.59 0.00 0.00 2.12
2573 2650 6.021596 CGAAAACTGTTGCAATCCACTATAC 58.978 40.000 0.59 0.00 0.00 1.47
2574 2651 5.935206 TCGAAAACTGTTGCAATCCACTATA 59.065 36.000 0.59 0.00 0.00 1.31
2575 2652 4.759693 TCGAAAACTGTTGCAATCCACTAT 59.240 37.500 0.59 0.00 0.00 2.12
2576 2653 4.130857 TCGAAAACTGTTGCAATCCACTA 58.869 39.130 0.59 0.00 0.00 2.74
2577 2654 2.948979 TCGAAAACTGTTGCAATCCACT 59.051 40.909 0.59 0.00 0.00 4.00
2578 2655 3.300009 CTCGAAAACTGTTGCAATCCAC 58.700 45.455 0.59 0.00 0.00 4.02
2579 2656 2.293122 CCTCGAAAACTGTTGCAATCCA 59.707 45.455 0.59 0.00 0.00 3.41
2580 2657 2.351738 CCCTCGAAAACTGTTGCAATCC 60.352 50.000 0.59 0.00 0.00 3.01
2581 2658 2.293399 ACCCTCGAAAACTGTTGCAATC 59.707 45.455 0.59 0.00 0.00 2.67
2582 2659 2.034558 CACCCTCGAAAACTGTTGCAAT 59.965 45.455 0.59 0.00 0.00 3.56
2583 2660 1.403679 CACCCTCGAAAACTGTTGCAA 59.596 47.619 0.00 0.00 0.00 4.08
2584 2661 1.021202 CACCCTCGAAAACTGTTGCA 58.979 50.000 0.00 0.00 0.00 4.08
2585 2662 0.310854 CCACCCTCGAAAACTGTTGC 59.689 55.000 0.00 0.00 0.00 4.17
2586 2663 1.873591 CTCCACCCTCGAAAACTGTTG 59.126 52.381 0.00 0.00 0.00 3.33
2587 2664 1.489230 ACTCCACCCTCGAAAACTGTT 59.511 47.619 0.00 0.00 0.00 3.16
2588 2665 1.129058 ACTCCACCCTCGAAAACTGT 58.871 50.000 0.00 0.00 0.00 3.55
2589 2666 3.611766 ATACTCCACCCTCGAAAACTG 57.388 47.619 0.00 0.00 0.00 3.16
2590 2667 3.581332 TGAATACTCCACCCTCGAAAACT 59.419 43.478 0.00 0.00 0.00 2.66
2591 2668 3.934068 TGAATACTCCACCCTCGAAAAC 58.066 45.455 0.00 0.00 0.00 2.43
2592 2669 4.320870 GTTGAATACTCCACCCTCGAAAA 58.679 43.478 0.00 0.00 0.00 2.29
2593 2670 3.307199 GGTTGAATACTCCACCCTCGAAA 60.307 47.826 0.00 0.00 32.27 3.46
2594 2671 2.235402 GGTTGAATACTCCACCCTCGAA 59.765 50.000 0.00 0.00 32.27 3.71
2595 2672 1.829222 GGTTGAATACTCCACCCTCGA 59.171 52.381 0.00 0.00 32.27 4.04
2596 2673 2.311124 GGTTGAATACTCCACCCTCG 57.689 55.000 0.00 0.00 32.27 4.63
2600 2677 2.773993 TTCGGGTTGAATACTCCACC 57.226 50.000 0.00 0.00 36.77 4.61
2601 2678 6.937436 ATAAATTCGGGTTGAATACTCCAC 57.063 37.500 0.00 0.00 46.65 4.02
2602 2679 8.025270 TCTATAAATTCGGGTTGAATACTCCA 57.975 34.615 0.00 0.00 46.65 3.86
2603 2680 9.503399 AATCTATAAATTCGGGTTGAATACTCC 57.497 33.333 0.00 0.00 46.65 3.85
2617 2694 8.433421 TTCCCTTGTGTCGAATCTATAAATTC 57.567 34.615 0.00 0.00 33.22 2.17
2618 2695 7.012421 GCTTCCCTTGTGTCGAATCTATAAATT 59.988 37.037 0.00 0.00 0.00 1.82
2619 2696 6.483640 GCTTCCCTTGTGTCGAATCTATAAAT 59.516 38.462 0.00 0.00 0.00 1.40
2620 2697 5.815740 GCTTCCCTTGTGTCGAATCTATAAA 59.184 40.000 0.00 0.00 0.00 1.40
2621 2698 5.357257 GCTTCCCTTGTGTCGAATCTATAA 58.643 41.667 0.00 0.00 0.00 0.98
2622 2699 4.202223 GGCTTCCCTTGTGTCGAATCTATA 60.202 45.833 0.00 0.00 0.00 1.31
2623 2700 3.432326 GGCTTCCCTTGTGTCGAATCTAT 60.432 47.826 0.00 0.00 0.00 1.98
2624 2701 2.093658 GGCTTCCCTTGTGTCGAATCTA 60.094 50.000 0.00 0.00 0.00 1.98
2625 2702 1.339151 GGCTTCCCTTGTGTCGAATCT 60.339 52.381 0.00 0.00 0.00 2.40
2626 2703 1.087501 GGCTTCCCTTGTGTCGAATC 58.912 55.000 0.00 0.00 0.00 2.52
2627 2704 0.400213 TGGCTTCCCTTGTGTCGAAT 59.600 50.000 0.00 0.00 0.00 3.34
2628 2705 0.181587 TTGGCTTCCCTTGTGTCGAA 59.818 50.000 0.00 0.00 0.00 3.71
2629 2706 0.181587 TTTGGCTTCCCTTGTGTCGA 59.818 50.000 0.00 0.00 0.00 4.20
2630 2707 0.593128 CTTTGGCTTCCCTTGTGTCG 59.407 55.000 0.00 0.00 0.00 4.35
2631 2708 1.981256 TCTTTGGCTTCCCTTGTGTC 58.019 50.000 0.00 0.00 0.00 3.67
2632 2709 2.452600 TTCTTTGGCTTCCCTTGTGT 57.547 45.000 0.00 0.00 0.00 3.72
2633 2710 5.665916 AATATTCTTTGGCTTCCCTTGTG 57.334 39.130 0.00 0.00 0.00 3.33
2634 2711 5.779771 TCAAATATTCTTTGGCTTCCCTTGT 59.220 36.000 0.00 0.00 0.00 3.16
2635 2712 6.284891 TCAAATATTCTTTGGCTTCCCTTG 57.715 37.500 0.00 0.00 0.00 3.61
2636 2713 6.070596 CCTTCAAATATTCTTTGGCTTCCCTT 60.071 38.462 0.00 0.00 0.00 3.95
2637 2714 5.423290 CCTTCAAATATTCTTTGGCTTCCCT 59.577 40.000 0.00 0.00 0.00 4.20
2638 2715 5.187772 ACCTTCAAATATTCTTTGGCTTCCC 59.812 40.000 0.00 0.00 0.00 3.97
2639 2716 6.286240 ACCTTCAAATATTCTTTGGCTTCC 57.714 37.500 0.00 0.00 0.00 3.46
2642 2719 8.633561 GCTAATACCTTCAAATATTCTTTGGCT 58.366 33.333 0.00 0.00 0.00 4.75
2643 2720 8.413229 TGCTAATACCTTCAAATATTCTTTGGC 58.587 33.333 0.00 0.00 0.00 4.52
2644 2721 9.956720 CTGCTAATACCTTCAAATATTCTTTGG 57.043 33.333 0.00 0.00 0.00 3.28
2645 2722 9.455847 GCTGCTAATACCTTCAAATATTCTTTG 57.544 33.333 0.00 0.00 0.00 2.77
2646 2723 9.413734 AGCTGCTAATACCTTCAAATATTCTTT 57.586 29.630 0.00 0.00 0.00 2.52
2647 2724 8.844244 CAGCTGCTAATACCTTCAAATATTCTT 58.156 33.333 0.00 0.00 0.00 2.52
2648 2725 8.213679 TCAGCTGCTAATACCTTCAAATATTCT 58.786 33.333 9.47 0.00 0.00 2.40
2649 2726 8.383318 TCAGCTGCTAATACCTTCAAATATTC 57.617 34.615 9.47 0.00 0.00 1.75
2650 2727 7.995488 ACTCAGCTGCTAATACCTTCAAATATT 59.005 33.333 9.47 0.00 0.00 1.28
2651 2728 7.512992 ACTCAGCTGCTAATACCTTCAAATAT 58.487 34.615 9.47 0.00 0.00 1.28
2652 2729 6.889198 ACTCAGCTGCTAATACCTTCAAATA 58.111 36.000 9.47 0.00 0.00 1.40
2653 2730 5.749462 ACTCAGCTGCTAATACCTTCAAAT 58.251 37.500 9.47 0.00 0.00 2.32
2654 2731 5.165961 ACTCAGCTGCTAATACCTTCAAA 57.834 39.130 9.47 0.00 0.00 2.69
2655 2732 4.826274 ACTCAGCTGCTAATACCTTCAA 57.174 40.909 9.47 0.00 0.00 2.69
2656 2733 4.020218 ACAACTCAGCTGCTAATACCTTCA 60.020 41.667 9.47 0.00 0.00 3.02
2657 2734 4.508662 ACAACTCAGCTGCTAATACCTTC 58.491 43.478 9.47 0.00 0.00 3.46
2658 2735 4.020218 TGACAACTCAGCTGCTAATACCTT 60.020 41.667 9.47 0.00 0.00 3.50
2659 2736 3.515502 TGACAACTCAGCTGCTAATACCT 59.484 43.478 9.47 0.00 0.00 3.08
2660 2737 3.861840 TGACAACTCAGCTGCTAATACC 58.138 45.455 9.47 0.00 0.00 2.73
2661 2738 6.092670 TGAATTGACAACTCAGCTGCTAATAC 59.907 38.462 9.47 0.00 0.00 1.89
2662 2739 6.172630 TGAATTGACAACTCAGCTGCTAATA 58.827 36.000 9.47 0.00 0.00 0.98
2663 2740 5.005740 TGAATTGACAACTCAGCTGCTAAT 58.994 37.500 9.47 0.00 0.00 1.73
2664 2741 4.388485 TGAATTGACAACTCAGCTGCTAA 58.612 39.130 9.47 0.00 0.00 3.09
2665 2742 4.006780 TGAATTGACAACTCAGCTGCTA 57.993 40.909 9.47 0.00 0.00 3.49
2666 2743 2.854963 TGAATTGACAACTCAGCTGCT 58.145 42.857 9.47 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.