Multiple sequence alignment - TraesCS5A01G082000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G082000 chr5A 100.000 4667 0 0 1 4667 106145070 106149736 0.000000e+00 8619.0
1 TraesCS5A01G082000 chr5A 100.000 112 0 0 797 908 106145754 106145865 1.700000e-49 207.0
2 TraesCS5A01G082000 chr5A 100.000 112 0 0 685 796 106145866 106145977 1.700000e-49 207.0
3 TraesCS5A01G082000 chr5A 91.837 147 11 1 1804 1949 106146732 106146878 2.200000e-48 204.0
4 TraesCS5A01G082000 chr5A 91.837 147 11 1 1663 1809 106146873 106147018 2.200000e-48 204.0
5 TraesCS5A01G082000 chr5A 95.745 94 4 0 602 695 106145930 106146023 8.090000e-33 152.0
6 TraesCS5A01G082000 chr5D 91.582 2269 114 24 1804 4028 97583424 97581189 0.000000e+00 3061.0
7 TraesCS5A01G082000 chr5D 90.887 823 35 17 1 796 97588529 97587720 0.000000e+00 1068.0
8 TraesCS5A01G082000 chr5D 92.343 431 22 8 1382 1809 97583700 97583278 1.860000e-168 603.0
9 TraesCS5A01G082000 chr5D 88.276 435 27 13 4069 4503 97581053 97580643 2.510000e-137 499.0
10 TraesCS5A01G082000 chr5D 91.071 280 14 4 1073 1344 97587578 97587302 7.380000e-98 368.0
11 TraesCS5A01G082000 chr5D 86.905 252 19 13 802 1042 97587827 97587579 2.140000e-68 270.0
12 TraesCS5A01G082000 chr5D 91.463 82 7 0 4586 4667 97580174 97580093 3.820000e-21 113.0
13 TraesCS5A01G082000 chr5B 87.559 1704 135 38 1964 3643 105534095 105535745 0.000000e+00 1901.0
14 TraesCS5A01G082000 chr5B 89.437 1420 110 23 1964 3374 106958653 106957265 0.000000e+00 1755.0
15 TraesCS5A01G082000 chr5B 92.583 809 37 14 1 796 106960402 106959604 0.000000e+00 1140.0
16 TraesCS5A01G082000 chr5B 90.943 806 54 11 1 796 105529711 105530507 0.000000e+00 1066.0
17 TraesCS5A01G082000 chr5B 86.563 707 50 22 3787 4472 105535802 105536484 0.000000e+00 737.0
18 TraesCS5A01G082000 chr5B 87.113 388 34 11 949 1324 106959512 106959129 4.320000e-115 425.0
19 TraesCS5A01G082000 chr5B 83.728 338 39 11 801 1125 105530401 105530735 5.870000e-79 305.0
20 TraesCS5A01G082000 chr5B 80.142 423 56 22 4073 4493 106956492 106956096 1.640000e-74 291.0
21 TraesCS5A01G082000 chr5B 85.274 292 27 10 1372 1653 106959133 106958848 2.130000e-73 287.0
22 TraesCS5A01G082000 chr5B 90.583 223 10 3 1119 1339 105533400 105533613 7.640000e-73 285.0
23 TraesCS5A01G082000 chr5B 84.158 303 33 9 1360 1653 105533605 105533901 3.560000e-71 279.0
24 TraesCS5A01G082000 chr5B 89.062 192 13 7 803 993 106959708 106959524 1.010000e-56 231.0
25 TraesCS5A01G082000 chr5B 95.122 82 2 1 4586 4667 105537000 105537079 1.360000e-25 128.0
26 TraesCS5A01G082000 chr5B 94.643 56 3 0 1912 1967 105534019 105534074 2.310000e-13 87.9
27 TraesCS5A01G082000 chr5B 92.857 42 3 0 3745 3786 373759551 373759592 1.400000e-05 62.1
28 TraesCS5A01G082000 chr1A 97.895 95 0 2 858 952 522968442 522968350 3.740000e-36 163.0
29 TraesCS5A01G082000 chr1A 95.745 94 1 3 602 695 522968439 522968349 1.050000e-31 148.0
30 TraesCS5A01G082000 chr1A 98.039 51 0 1 746 796 522968442 522968393 2.310000e-13 87.9
31 TraesCS5A01G082000 chr3D 95.146 103 3 2 869 969 400786609 400786711 1.340000e-35 161.0
32 TraesCS5A01G082000 chr3B 91.453 117 6 4 861 977 526684573 526684685 1.740000e-34 158.0
33 TraesCS5A01G082000 chr2A 98.851 87 1 0 860 946 523453186 523453272 6.250000e-34 156.0
34 TraesCS5A01G082000 chr2A 91.743 109 7 2 595 702 523453180 523453287 2.910000e-32 150.0
35 TraesCS5A01G082000 chr2A 97.959 49 1 0 748 796 523453186 523453234 8.320000e-13 86.1
36 TraesCS5A01G082000 chr2A 97.143 35 0 1 3752 3786 33714370 33714403 1.810000e-04 58.4
37 TraesCS5A01G082000 chr1B 94.175 103 4 2 602 703 579940620 579940519 6.250000e-34 156.0
38 TraesCS5A01G082000 chr1B 94.898 98 2 3 610 707 22073981 22073887 2.910000e-32 150.0
39 TraesCS5A01G082000 chr1B 88.060 134 5 8 860 983 653876098 653875966 1.050000e-31 148.0
40 TraesCS5A01G082000 chr1B 98.039 51 0 1 746 796 579940623 579940574 2.310000e-13 87.9
41 TraesCS5A01G082000 chr1B 97.959 49 0 1 748 796 653876098 653876051 2.990000e-12 84.2
42 TraesCS5A01G082000 chr2D 91.304 115 7 3 595 708 386708810 386708922 2.250000e-33 154.0
43 TraesCS5A01G082000 chr2D 91.304 46 1 3 3749 3792 8222447 8222403 5.040000e-05 60.2
44 TraesCS5A01G082000 chr2B 85.000 80 12 0 717 796 458083541 458083620 1.080000e-11 82.4
45 TraesCS5A01G082000 chr2B 96.875 32 0 1 3752 3782 158122681 158122712 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G082000 chr5A 106145070 106149736 4666 False 1598.833333 8619 96.569833 1 4667 6 chr5A.!!$F1 4666
1 TraesCS5A01G082000 chr5D 97580093 97588529 8436 True 854.571429 3061 90.361000 1 4667 7 chr5D.!!$R1 4666
2 TraesCS5A01G082000 chr5B 106956096 106960402 4306 True 688.166667 1755 87.268500 1 4493 6 chr5B.!!$R1 4492
3 TraesCS5A01G082000 chr5B 105529711 105537079 7368 False 598.612500 1901 89.162375 1 4667 8 chr5B.!!$F2 4666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 916 0.039618 AATTGACTCCGTGGCCCAAT 59.960 50.0 0.0 0.0 0.00 3.16 F
889 922 0.182537 CTCCGTGGCCCAATGGATAA 59.817 55.0 0.0 0.0 0.00 1.75 F
1346 4071 0.323629 TACCCTGTTCTTGCTTCCCG 59.676 55.0 0.0 0.0 0.00 5.14 F
1814 8182 0.234884 AACTTGCTACGTTCGCTTGC 59.765 50.0 0.0 0.0 0.00 4.01 F
1823 8191 0.378257 CGTTCGCTTGCTAATGCCAT 59.622 50.0 0.0 0.0 38.71 4.40 F
1837 8205 0.618458 TGCCATCGGTTTAGCCTTCT 59.382 50.0 0.0 0.0 34.25 2.85 F
3249 9654 0.743688 TCAATGGTGTGGTGTTGCAC 59.256 50.0 0.0 0.0 35.07 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 8163 0.234884 GCAAGCGAACGTAGCAAGTT 59.765 50.000 16.58 1.79 37.01 2.66 R
1804 8172 0.378257 ATGGCATTAGCAAGCGAACG 59.622 50.000 0.00 0.00 44.61 3.95 R
2908 9313 0.031994 ATTTTGCGCCTCACCACAAC 59.968 50.000 4.18 0.00 0.00 3.32 R
2983 9388 0.614697 AACCCAATAACAGCCCAGCC 60.615 55.000 0.00 0.00 0.00 4.85 R
3239 9644 0.901124 AAAAAGGCAGTGCAACACCA 59.099 45.000 18.61 0.00 41.43 4.17 R
3466 10034 1.421268 ACTGCATGAACTGGAGGACAA 59.579 47.619 0.00 0.00 46.90 3.18 R
4195 10909 0.107897 TGCTCACAACAACACCGTCT 60.108 50.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 172 2.433145 CACGCACGCATGGAGTCT 60.433 61.111 0.00 0.00 0.00 3.24
156 173 2.433145 ACGCACGCATGGAGTCTG 60.433 61.111 0.00 0.00 0.00 3.51
157 174 2.125952 CGCACGCATGGAGTCTGA 60.126 61.111 0.00 0.00 0.00 3.27
158 175 2.447887 CGCACGCATGGAGTCTGAC 61.448 63.158 0.00 0.00 0.00 3.51
159 176 1.374631 GCACGCATGGAGTCTGACA 60.375 57.895 10.88 0.00 0.00 3.58
160 177 0.742281 GCACGCATGGAGTCTGACAT 60.742 55.000 10.88 0.00 0.00 3.06
284 311 2.284699 ACTGGGAGTAAGGCGGCT 60.285 61.111 5.25 5.25 0.00 5.52
350 377 0.517316 GAAAGAAGCGACGCCATTGT 59.483 50.000 17.79 0.26 0.00 2.71
351 378 0.951558 AAAGAAGCGACGCCATTGTT 59.048 45.000 17.79 7.31 0.00 2.83
352 379 0.238289 AAGAAGCGACGCCATTGTTG 59.762 50.000 17.79 0.00 0.00 3.33
353 380 0.602638 AGAAGCGACGCCATTGTTGA 60.603 50.000 17.79 0.00 0.00 3.18
354 381 0.447801 GAAGCGACGCCATTGTTGAT 59.552 50.000 17.79 0.00 0.00 2.57
363 390 1.747355 GCCATTGTTGATCCACCTCTG 59.253 52.381 0.00 0.00 0.00 3.35
371 398 2.022240 GATCCACCTCTGTCCTCGCC 62.022 65.000 0.00 0.00 0.00 5.54
382 409 4.271816 CCTCGCCTCGTCGATGGG 62.272 72.222 4.48 0.00 37.87 4.00
383 410 3.209812 CTCGCCTCGTCGATGGGA 61.210 66.667 5.94 14.73 37.87 4.37
384 411 2.518587 TCGCCTCGTCGATGGGAT 60.519 61.111 5.94 0.00 33.02 3.85
436 467 0.928451 GCGACGTGCAAACCTTTGTC 60.928 55.000 0.00 0.00 45.45 3.18
482 513 4.293648 TGGTGTGTGCGGTCTCGG 62.294 66.667 0.00 0.00 36.79 4.63
523 554 3.079478 TGGCATCTCTCCAGCGCT 61.079 61.111 2.64 2.64 0.00 5.92
582 613 9.783256 AAATCACGGAAATAATGTTTAGTAAGC 57.217 29.630 0.00 0.00 0.00 3.09
584 615 7.970384 TCACGGAAATAATGTTTAGTAAGCTG 58.030 34.615 0.00 0.00 0.00 4.24
590 621 7.497925 AATAATGTTTAGTAAGCTGCTAGGC 57.502 36.000 0.90 0.00 0.00 3.93
685 716 0.759436 ATCCCCAGCGGAGTCGTATT 60.759 55.000 0.00 0.00 46.60 1.89
687 718 1.672854 CCCCAGCGGAGTCGTATTCA 61.673 60.000 0.00 0.00 38.89 2.57
720 753 3.928005 TTATTATGTACGGCCCAACCA 57.072 42.857 0.00 0.00 39.03 3.67
722 755 2.810870 TTATGTACGGCCCAACCAAT 57.189 45.000 0.00 0.00 39.03 3.16
723 756 3.928005 TTATGTACGGCCCAACCAATA 57.072 42.857 0.00 0.00 39.03 1.90
725 758 5.563876 TTATGTACGGCCCAACCAATATA 57.436 39.130 0.00 0.00 39.03 0.86
730 763 5.779260 TGTACGGCCCAACCAATATATAGTA 59.221 40.000 0.00 0.00 39.03 1.82
789 822 1.717032 ATGGATAAGGCGCTGGTCTA 58.283 50.000 7.64 0.00 0.00 2.59
790 823 0.750850 TGGATAAGGCGCTGGTCTAC 59.249 55.000 7.64 0.00 0.00 2.59
791 824 0.318784 GGATAAGGCGCTGGTCTACG 60.319 60.000 7.64 0.00 0.00 3.51
792 825 0.666913 GATAAGGCGCTGGTCTACGA 59.333 55.000 7.64 0.00 0.00 3.43
793 826 1.066605 GATAAGGCGCTGGTCTACGAA 59.933 52.381 7.64 0.00 0.00 3.85
794 827 0.889994 TAAGGCGCTGGTCTACGAAA 59.110 50.000 7.64 0.00 0.00 3.46
795 828 0.669625 AAGGCGCTGGTCTACGAAAC 60.670 55.000 7.64 0.00 0.00 2.78
796 829 1.080025 GGCGCTGGTCTACGAAACT 60.080 57.895 7.64 0.00 0.00 2.66
797 830 0.669625 GGCGCTGGTCTACGAAACTT 60.670 55.000 7.64 0.00 0.00 2.66
798 831 0.714439 GCGCTGGTCTACGAAACTTC 59.286 55.000 0.00 0.00 0.00 3.01
799 832 1.933500 GCGCTGGTCTACGAAACTTCA 60.934 52.381 0.00 0.00 0.00 3.02
800 833 2.607187 CGCTGGTCTACGAAACTTCAT 58.393 47.619 0.00 0.00 0.00 2.57
801 834 2.993899 CGCTGGTCTACGAAACTTCATT 59.006 45.455 0.00 0.00 0.00 2.57
802 835 3.432252 CGCTGGTCTACGAAACTTCATTT 59.568 43.478 0.00 0.00 0.00 2.32
803 836 4.084013 CGCTGGTCTACGAAACTTCATTTT 60.084 41.667 0.00 0.00 0.00 1.82
804 837 5.560183 CGCTGGTCTACGAAACTTCATTTTT 60.560 40.000 0.00 0.00 0.00 1.94
826 859 5.744666 TTGCTCTTTTATTATGTACGGCC 57.255 39.130 0.00 0.00 0.00 6.13
827 860 4.131596 TGCTCTTTTATTATGTACGGCCC 58.868 43.478 0.00 0.00 0.00 5.80
828 861 4.131596 GCTCTTTTATTATGTACGGCCCA 58.868 43.478 0.00 0.00 0.00 5.36
829 862 4.577283 GCTCTTTTATTATGTACGGCCCAA 59.423 41.667 0.00 0.00 0.00 4.12
830 863 5.505159 GCTCTTTTATTATGTACGGCCCAAC 60.505 44.000 0.00 0.00 0.00 3.77
831 864 4.883006 TCTTTTATTATGTACGGCCCAACC 59.117 41.667 0.00 0.00 0.00 3.77
832 865 3.928005 TTATTATGTACGGCCCAACCA 57.072 42.857 0.00 0.00 39.03 3.67
833 866 2.810870 ATTATGTACGGCCCAACCAA 57.189 45.000 0.00 0.00 39.03 3.67
834 867 2.810870 TTATGTACGGCCCAACCAAT 57.189 45.000 0.00 0.00 39.03 3.16
835 868 3.928005 TTATGTACGGCCCAACCAATA 57.072 42.857 0.00 0.00 39.03 1.90
836 869 4.440826 TTATGTACGGCCCAACCAATAT 57.559 40.909 0.00 0.00 39.03 1.28
837 870 5.563876 TTATGTACGGCCCAACCAATATA 57.436 39.130 0.00 0.00 39.03 0.86
838 871 4.650972 ATGTACGGCCCAACCAATATAT 57.349 40.909 0.00 0.00 39.03 0.86
839 872 5.765576 ATGTACGGCCCAACCAATATATA 57.234 39.130 0.00 0.00 39.03 0.86
840 873 5.155278 TGTACGGCCCAACCAATATATAG 57.845 43.478 0.00 0.00 39.03 1.31
841 874 4.594062 TGTACGGCCCAACCAATATATAGT 59.406 41.667 0.00 0.00 39.03 2.12
842 875 5.779260 TGTACGGCCCAACCAATATATAGTA 59.221 40.000 0.00 0.00 39.03 1.82
843 876 5.829062 ACGGCCCAACCAATATATAGTAA 57.171 39.130 0.00 0.00 39.03 2.24
844 877 5.554070 ACGGCCCAACCAATATATAGTAAC 58.446 41.667 0.00 0.00 39.03 2.50
845 878 5.072058 ACGGCCCAACCAATATATAGTAACA 59.928 40.000 0.00 0.00 39.03 2.41
846 879 5.998981 CGGCCCAACCAATATATAGTAACAA 59.001 40.000 0.00 0.00 39.03 2.83
847 880 6.487331 CGGCCCAACCAATATATAGTAACAAA 59.513 38.462 0.00 0.00 39.03 2.83
848 881 7.308348 CGGCCCAACCAATATATAGTAACAAAG 60.308 40.741 0.00 0.00 39.03 2.77
849 882 7.368059 GCCCAACCAATATATAGTAACAAAGC 58.632 38.462 0.00 0.00 0.00 3.51
850 883 7.523216 GCCCAACCAATATATAGTAACAAAGCC 60.523 40.741 0.00 0.00 0.00 4.35
851 884 7.039993 CCCAACCAATATATAGTAACAAAGCCC 60.040 40.741 0.00 0.00 0.00 5.19
852 885 7.504238 CCAACCAATATATAGTAACAAAGCCCA 59.496 37.037 0.00 0.00 0.00 5.36
853 886 8.908903 CAACCAATATATAGTAACAAAGCCCAA 58.091 33.333 0.00 0.00 0.00 4.12
854 887 9.482175 AACCAATATATAGTAACAAAGCCCAAA 57.518 29.630 0.00 0.00 0.00 3.28
855 888 9.482175 ACCAATATATAGTAACAAAGCCCAAAA 57.518 29.630 0.00 0.00 0.00 2.44
861 894 5.622346 AGTAACAAAGCCCAAAAATTCCA 57.378 34.783 0.00 0.00 0.00 3.53
862 895 6.186420 AGTAACAAAGCCCAAAAATTCCAT 57.814 33.333 0.00 0.00 0.00 3.41
863 896 6.230472 AGTAACAAAGCCCAAAAATTCCATC 58.770 36.000 0.00 0.00 0.00 3.51
864 897 4.703379 ACAAAGCCCAAAAATTCCATCA 57.297 36.364 0.00 0.00 0.00 3.07
865 898 5.046288 ACAAAGCCCAAAAATTCCATCAA 57.954 34.783 0.00 0.00 0.00 2.57
866 899 5.633117 ACAAAGCCCAAAAATTCCATCAAT 58.367 33.333 0.00 0.00 0.00 2.57
867 900 6.069994 ACAAAGCCCAAAAATTCCATCAATT 58.930 32.000 0.00 0.00 36.12 2.32
868 901 6.016108 ACAAAGCCCAAAAATTCCATCAATTG 60.016 34.615 0.00 0.00 34.69 2.32
869 902 5.502089 AGCCCAAAAATTCCATCAATTGA 57.498 34.783 11.26 11.26 34.69 2.57
870 903 5.247862 AGCCCAAAAATTCCATCAATTGAC 58.752 37.500 11.07 0.00 34.69 3.18
871 904 5.013391 AGCCCAAAAATTCCATCAATTGACT 59.987 36.000 11.07 0.00 34.69 3.41
872 905 5.352293 GCCCAAAAATTCCATCAATTGACTC 59.648 40.000 11.07 0.00 34.69 3.36
873 906 5.876460 CCCAAAAATTCCATCAATTGACTCC 59.124 40.000 11.07 0.00 34.69 3.85
874 907 5.577945 CCAAAAATTCCATCAATTGACTCCG 59.422 40.000 11.07 0.00 34.69 4.63
875 908 5.982890 AAAATTCCATCAATTGACTCCGT 57.017 34.783 11.07 0.00 34.69 4.69
876 909 4.970662 AATTCCATCAATTGACTCCGTG 57.029 40.909 11.07 4.61 33.07 4.94
877 910 2.401583 TCCATCAATTGACTCCGTGG 57.598 50.000 11.07 14.04 0.00 4.94
878 911 0.734889 CCATCAATTGACTCCGTGGC 59.265 55.000 11.07 0.00 0.00 5.01
879 912 0.734889 CATCAATTGACTCCGTGGCC 59.265 55.000 11.07 0.00 0.00 5.36
880 913 0.394352 ATCAATTGACTCCGTGGCCC 60.394 55.000 11.07 0.00 0.00 5.80
881 914 1.303236 CAATTGACTCCGTGGCCCA 60.303 57.895 0.00 0.00 0.00 5.36
882 915 0.893270 CAATTGACTCCGTGGCCCAA 60.893 55.000 0.00 0.00 0.00 4.12
883 916 0.039618 AATTGACTCCGTGGCCCAAT 59.960 50.000 0.00 0.00 0.00 3.16
884 917 0.680921 ATTGACTCCGTGGCCCAATG 60.681 55.000 0.00 0.00 0.00 2.82
885 918 2.438434 GACTCCGTGGCCCAATGG 60.438 66.667 0.00 0.00 0.00 3.16
886 919 2.933287 ACTCCGTGGCCCAATGGA 60.933 61.111 0.00 1.32 0.00 3.41
887 920 2.270874 GACTCCGTGGCCCAATGGAT 62.271 60.000 0.00 0.00 0.00 3.41
888 921 0.986019 ACTCCGTGGCCCAATGGATA 60.986 55.000 0.00 0.00 0.00 2.59
889 922 0.182537 CTCCGTGGCCCAATGGATAA 59.817 55.000 0.00 0.00 0.00 1.75
890 923 0.182537 TCCGTGGCCCAATGGATAAG 59.817 55.000 0.00 0.00 0.00 1.73
891 924 0.823356 CCGTGGCCCAATGGATAAGG 60.823 60.000 0.00 0.00 0.00 2.69
892 925 1.455383 CGTGGCCCAATGGATAAGGC 61.455 60.000 0.00 0.00 44.99 4.35
893 926 1.152777 TGGCCCAATGGATAAGGCG 60.153 57.895 0.00 0.00 46.75 5.52
894 927 2.564721 GGCCCAATGGATAAGGCGC 61.565 63.158 0.00 0.00 46.75 6.53
895 928 1.529244 GCCCAATGGATAAGGCGCT 60.529 57.895 7.64 0.00 35.30 5.92
896 929 1.799258 GCCCAATGGATAAGGCGCTG 61.799 60.000 7.64 0.00 35.30 5.18
897 930 1.174712 CCCAATGGATAAGGCGCTGG 61.175 60.000 7.64 3.05 0.00 4.85
898 931 0.466189 CCAATGGATAAGGCGCTGGT 60.466 55.000 7.64 0.00 0.00 4.00
899 932 0.947244 CAATGGATAAGGCGCTGGTC 59.053 55.000 7.64 0.40 0.00 4.02
900 933 0.839946 AATGGATAAGGCGCTGGTCT 59.160 50.000 7.64 0.00 0.00 3.85
1029 1507 2.616797 TTTGCAGGGGAGTCGCAACA 62.617 55.000 9.66 0.97 44.78 3.33
1035 1513 0.958822 GGGGAGTCGCAACACAAAAT 59.041 50.000 9.66 0.00 0.00 1.82
1053 1532 0.598065 ATTCGAGTGCAAAGCCCAAC 59.402 50.000 0.00 0.00 0.00 3.77
1059 1538 2.192861 TGCAAAGCCCAACAGACCG 61.193 57.895 0.00 0.00 0.00 4.79
1100 1579 4.032104 GCTCCTTAACATAACACGTAACCG 59.968 45.833 0.00 0.00 40.83 4.44
1150 3869 2.290464 ACCAGATAGAACTCGTCGGAG 58.710 52.381 0.00 0.00 46.13 4.63
1273 3998 1.090052 GCGGTCAACTATGTCAGCCC 61.090 60.000 0.00 0.00 31.80 5.19
1288 4013 2.612251 CCCCTCTCCCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
1309 4034 7.603651 TCTCCCTTCGATCTAGTTATTTATGC 58.396 38.462 0.00 0.00 0.00 3.14
1330 4055 4.984161 TGCGTCGCCTACTTATTAATTACC 59.016 41.667 15.88 0.00 0.00 2.85
1331 4056 4.386954 GCGTCGCCTACTTATTAATTACCC 59.613 45.833 5.75 0.00 0.00 3.69
1332 4057 5.776744 CGTCGCCTACTTATTAATTACCCT 58.223 41.667 0.00 0.00 0.00 4.34
1333 4058 5.632347 CGTCGCCTACTTATTAATTACCCTG 59.368 44.000 0.00 0.00 0.00 4.45
1334 4059 6.519382 GTCGCCTACTTATTAATTACCCTGT 58.481 40.000 0.00 0.00 0.00 4.00
1335 4060 6.988580 GTCGCCTACTTATTAATTACCCTGTT 59.011 38.462 0.00 0.00 0.00 3.16
1336 4061 7.170489 GTCGCCTACTTATTAATTACCCTGTTC 59.830 40.741 0.00 0.00 0.00 3.18
1337 4062 7.070322 TCGCCTACTTATTAATTACCCTGTTCT 59.930 37.037 0.00 0.00 0.00 3.01
1338 4063 7.713942 CGCCTACTTATTAATTACCCTGTTCTT 59.286 37.037 0.00 0.00 0.00 2.52
1339 4064 8.837389 GCCTACTTATTAATTACCCTGTTCTTG 58.163 37.037 0.00 0.00 0.00 3.02
1340 4065 8.837389 CCTACTTATTAATTACCCTGTTCTTGC 58.163 37.037 0.00 0.00 0.00 4.01
1341 4066 9.614792 CTACTTATTAATTACCCTGTTCTTGCT 57.385 33.333 0.00 0.00 0.00 3.91
1342 4067 8.879427 ACTTATTAATTACCCTGTTCTTGCTT 57.121 30.769 0.00 0.00 0.00 3.91
1343 4068 8.957466 ACTTATTAATTACCCTGTTCTTGCTTC 58.043 33.333 0.00 0.00 0.00 3.86
1344 4069 6.775594 ATTAATTACCCTGTTCTTGCTTCC 57.224 37.500 0.00 0.00 0.00 3.46
1345 4070 2.579410 TTACCCTGTTCTTGCTTCCC 57.421 50.000 0.00 0.00 0.00 3.97
1346 4071 0.323629 TACCCTGTTCTTGCTTCCCG 59.676 55.000 0.00 0.00 0.00 5.14
1347 4072 2.335712 CCCTGTTCTTGCTTCCCGC 61.336 63.158 0.00 0.00 39.77 6.13
1381 4106 1.532437 TGTTCTTGCGTCATTGCTGAG 59.468 47.619 0.00 0.00 35.36 3.35
1385 4110 4.063998 TCTTGCGTCATTGCTGAGATAT 57.936 40.909 0.00 0.00 35.36 1.63
1387 4112 2.486918 TGCGTCATTGCTGAGATATGG 58.513 47.619 0.00 0.00 35.36 2.74
1389 4114 2.548707 GCGTCATTGCTGAGATATGGGA 60.549 50.000 0.00 0.00 30.18 4.37
1390 4115 3.867600 GCGTCATTGCTGAGATATGGGAT 60.868 47.826 0.00 0.00 30.18 3.85
1391 4116 4.321718 CGTCATTGCTGAGATATGGGATT 58.678 43.478 0.00 0.00 30.18 3.01
1392 4117 5.482006 CGTCATTGCTGAGATATGGGATTA 58.518 41.667 0.00 0.00 30.18 1.75
1393 4118 5.349817 CGTCATTGCTGAGATATGGGATTAC 59.650 44.000 0.00 0.00 30.18 1.89
1396 7716 7.763528 GTCATTGCTGAGATATGGGATTACTAG 59.236 40.741 0.00 0.00 30.18 2.57
1427 7748 4.092968 GTCTGTTTTGCTAACTGATACGGG 59.907 45.833 12.37 0.00 32.22 5.28
1443 7764 2.173519 ACGGGTGAGAGATTCGGTTTA 58.826 47.619 0.00 0.00 0.00 2.01
1469 7790 1.092348 GGATGGTTAGGTTGTTCGCC 58.908 55.000 0.00 0.00 0.00 5.54
1471 7792 1.303091 ATGGTTAGGTTGTTCGCCGC 61.303 55.000 0.00 0.00 0.00 6.53
1497 7824 7.279615 CCTTTTGATGTGTAGTATATGACCCA 58.720 38.462 0.00 0.00 0.00 4.51
1515 7842 2.012673 CCAGGAACTTGCTAGCACATC 58.987 52.381 19.17 15.22 34.60 3.06
1526 7853 1.596260 CTAGCACATCGTGAAGCCATG 59.404 52.381 0.00 0.00 35.23 3.66
1655 7982 4.737855 TTAGGCATTCTGACTCTGTACC 57.262 45.455 0.00 0.00 36.80 3.34
1656 7983 1.478510 AGGCATTCTGACTCTGTACCG 59.521 52.381 0.00 0.00 18.29 4.02
1761 8129 1.007336 GTCGGTACTGTCTTGTGGCG 61.007 60.000 0.64 0.00 0.00 5.69
1762 8130 1.006571 CGGTACTGTCTTGTGGCGT 60.007 57.895 0.00 0.00 0.00 5.68
1763 8131 0.599204 CGGTACTGTCTTGTGGCGTT 60.599 55.000 0.00 0.00 0.00 4.84
1764 8132 1.589803 GGTACTGTCTTGTGGCGTTT 58.410 50.000 0.00 0.00 0.00 3.60
1765 8133 1.263217 GGTACTGTCTTGTGGCGTTTG 59.737 52.381 0.00 0.00 0.00 2.93
1766 8134 1.937899 GTACTGTCTTGTGGCGTTTGT 59.062 47.619 0.00 0.00 0.00 2.83
1767 8135 0.732571 ACTGTCTTGTGGCGTTTGTG 59.267 50.000 0.00 0.00 0.00 3.33
1768 8136 1.013596 CTGTCTTGTGGCGTTTGTGA 58.986 50.000 0.00 0.00 0.00 3.58
1769 8137 0.730265 TGTCTTGTGGCGTTTGTGAC 59.270 50.000 0.00 0.00 0.00 3.67
1784 8152 7.324322 CGTTTGTGACGTACTAGTAAATTCA 57.676 36.000 3.61 4.85 46.49 2.57
1785 8153 7.946043 CGTTTGTGACGTACTAGTAAATTCAT 58.054 34.615 3.61 0.00 46.49 2.57
1786 8154 9.064804 CGTTTGTGACGTACTAGTAAATTCATA 57.935 33.333 3.61 3.47 46.49 2.15
1807 8175 9.865321 TTCATATAACTTCTAACTTGCTACGTT 57.135 29.630 0.00 0.00 0.00 3.99
1808 8176 9.512435 TCATATAACTTCTAACTTGCTACGTTC 57.488 33.333 0.00 0.00 0.00 3.95
1809 8177 6.866179 ATAACTTCTAACTTGCTACGTTCG 57.134 37.500 0.00 0.00 0.00 3.95
1810 8178 2.985139 ACTTCTAACTTGCTACGTTCGC 59.015 45.455 0.00 0.00 0.00 4.70
1811 8179 3.243336 CTTCTAACTTGCTACGTTCGCT 58.757 45.455 0.00 0.00 0.00 4.93
1812 8180 3.293311 TCTAACTTGCTACGTTCGCTT 57.707 42.857 0.00 0.00 0.00 4.68
1813 8181 2.984471 TCTAACTTGCTACGTTCGCTTG 59.016 45.455 0.00 0.00 0.00 4.01
1814 8182 0.234884 AACTTGCTACGTTCGCTTGC 59.765 50.000 0.00 0.00 0.00 4.01
1815 8183 0.600255 ACTTGCTACGTTCGCTTGCT 60.600 50.000 0.00 0.00 0.00 3.91
1816 8184 1.336517 ACTTGCTACGTTCGCTTGCTA 60.337 47.619 0.00 0.00 0.00 3.49
1817 8185 1.724623 CTTGCTACGTTCGCTTGCTAA 59.275 47.619 0.00 0.00 0.00 3.09
1818 8186 2.004583 TGCTACGTTCGCTTGCTAAT 57.995 45.000 0.00 0.00 0.00 1.73
1819 8187 1.658596 TGCTACGTTCGCTTGCTAATG 59.341 47.619 0.00 0.00 0.00 1.90
1820 8188 1.592350 GCTACGTTCGCTTGCTAATGC 60.592 52.381 0.00 0.00 40.20 3.56
1821 8189 1.003851 TACGTTCGCTTGCTAATGCC 58.996 50.000 0.00 0.00 38.71 4.40
1822 8190 0.953471 ACGTTCGCTTGCTAATGCCA 60.953 50.000 0.00 0.00 38.71 4.92
1823 8191 0.378257 CGTTCGCTTGCTAATGCCAT 59.622 50.000 0.00 0.00 38.71 4.40
1824 8192 1.595489 CGTTCGCTTGCTAATGCCATC 60.595 52.381 0.00 0.00 38.71 3.51
1825 8193 0.657312 TTCGCTTGCTAATGCCATCG 59.343 50.000 0.00 0.00 38.71 3.84
1826 8194 1.159713 TCGCTTGCTAATGCCATCGG 61.160 55.000 0.00 0.00 38.71 4.18
1827 8195 1.439353 CGCTTGCTAATGCCATCGGT 61.439 55.000 0.00 0.00 38.71 4.69
1828 8196 0.740737 GCTTGCTAATGCCATCGGTT 59.259 50.000 0.00 0.00 38.71 4.44
1829 8197 1.134946 GCTTGCTAATGCCATCGGTTT 59.865 47.619 0.00 0.00 38.71 3.27
1830 8198 2.357637 GCTTGCTAATGCCATCGGTTTA 59.642 45.455 0.00 0.00 38.71 2.01
1831 8199 3.548818 GCTTGCTAATGCCATCGGTTTAG 60.549 47.826 0.00 0.00 38.71 1.85
1832 8200 1.946768 TGCTAATGCCATCGGTTTAGC 59.053 47.619 16.49 16.49 41.90 3.09
1833 8201 1.266989 GCTAATGCCATCGGTTTAGCC 59.733 52.381 14.12 0.00 38.91 3.93
1834 8202 2.851195 CTAATGCCATCGGTTTAGCCT 58.149 47.619 0.00 0.00 34.25 4.58
1835 8203 2.143876 AATGCCATCGGTTTAGCCTT 57.856 45.000 0.00 0.00 34.25 4.35
1836 8204 1.680338 ATGCCATCGGTTTAGCCTTC 58.320 50.000 0.00 0.00 34.25 3.46
1837 8205 0.618458 TGCCATCGGTTTAGCCTTCT 59.382 50.000 0.00 0.00 34.25 2.85
1838 8206 1.017387 GCCATCGGTTTAGCCTTCTG 58.983 55.000 0.00 0.00 34.25 3.02
1839 8207 1.679032 GCCATCGGTTTAGCCTTCTGT 60.679 52.381 0.00 0.00 34.25 3.41
1840 8208 2.419574 GCCATCGGTTTAGCCTTCTGTA 60.420 50.000 0.00 0.00 34.25 2.74
1841 8209 3.195661 CCATCGGTTTAGCCTTCTGTAC 58.804 50.000 0.00 0.00 34.25 2.90
1842 8210 3.118738 CCATCGGTTTAGCCTTCTGTACT 60.119 47.826 0.00 0.00 34.25 2.73
1843 8211 4.504858 CATCGGTTTAGCCTTCTGTACTT 58.495 43.478 0.00 0.00 34.25 2.24
1844 8212 3.921677 TCGGTTTAGCCTTCTGTACTTG 58.078 45.455 0.00 0.00 34.25 3.16
1845 8213 3.000727 CGGTTTAGCCTTCTGTACTTGG 58.999 50.000 0.00 0.00 34.25 3.61
1846 8214 2.747989 GGTTTAGCCTTCTGTACTTGGC 59.252 50.000 9.74 9.74 45.21 4.52
1851 8219 3.828875 GCCTTCTGTACTTGGCTATCT 57.171 47.619 10.26 0.00 41.92 1.98
1852 8220 3.462021 GCCTTCTGTACTTGGCTATCTG 58.538 50.000 10.26 0.00 41.92 2.90
1853 8221 3.462021 CCTTCTGTACTTGGCTATCTGC 58.538 50.000 0.00 0.00 41.94 4.26
1854 8222 3.118629 CCTTCTGTACTTGGCTATCTGCA 60.119 47.826 0.00 0.00 45.15 4.41
1855 8223 4.507710 CTTCTGTACTTGGCTATCTGCAA 58.492 43.478 0.00 0.00 45.15 4.08
1856 8224 4.128925 TCTGTACTTGGCTATCTGCAAG 57.871 45.455 0.00 0.00 45.15 4.01
1873 8241 6.519382 TCTGCAAGATGAGACTATAATGTGG 58.481 40.000 0.00 0.00 38.67 4.17
1874 8242 5.059161 TGCAAGATGAGACTATAATGTGGC 58.941 41.667 0.00 0.00 0.00 5.01
1875 8243 4.151335 GCAAGATGAGACTATAATGTGGCG 59.849 45.833 0.00 0.00 0.00 5.69
1876 8244 5.292765 CAAGATGAGACTATAATGTGGCGT 58.707 41.667 0.00 0.00 0.00 5.68
1877 8245 5.537300 AGATGAGACTATAATGTGGCGTT 57.463 39.130 0.00 0.00 0.00 4.84
1878 8246 6.650427 AGATGAGACTATAATGTGGCGTTA 57.350 37.500 0.00 0.00 0.00 3.18
1879 8247 6.682746 AGATGAGACTATAATGTGGCGTTAG 58.317 40.000 0.00 0.00 0.00 2.34
1880 8248 5.847111 TGAGACTATAATGTGGCGTTAGT 57.153 39.130 0.00 0.00 0.00 2.24
1881 8249 5.828747 TGAGACTATAATGTGGCGTTAGTC 58.171 41.667 0.00 0.00 39.23 2.59
1882 8250 4.856664 AGACTATAATGTGGCGTTAGTCG 58.143 43.478 0.00 0.00 42.18 4.18
1883 8251 4.337555 AGACTATAATGTGGCGTTAGTCGT 59.662 41.667 0.00 0.00 42.18 4.34
1884 8252 4.604976 ACTATAATGTGGCGTTAGTCGTC 58.395 43.478 0.00 0.00 45.13 4.20
1891 8259 1.892468 GGCGTTAGTCGTCAGTACTG 58.108 55.000 17.17 17.17 44.22 2.74
1892 8260 1.466167 GGCGTTAGTCGTCAGTACTGA 59.534 52.381 21.74 21.74 44.22 3.41
1908 8276 2.634600 ACTGACTTGTGGCGTTTGTTA 58.365 42.857 0.00 0.00 0.00 2.41
1968 8360 1.466167 CTGCACAACTATGGCTGTGTC 59.534 52.381 13.30 7.13 43.94 3.67
1994 8386 1.202463 CCACCTCTATCTTCGGCTGTG 60.202 57.143 0.00 0.00 0.00 3.66
2037 8429 2.849096 TACGGGTGCGGTCCTCTCAT 62.849 60.000 0.00 0.00 0.00 2.90
2046 8438 1.676014 CGGTCCTCTCATGGTTGTTCC 60.676 57.143 0.00 0.00 0.00 3.62
2098 8490 2.820197 TGGGATCTAGGATCACGAATCG 59.180 50.000 0.00 0.00 34.99 3.34
2167 8559 1.911057 ACCTTAGTTCCTTTGCTGGC 58.089 50.000 0.00 0.00 0.00 4.85
2231 8623 6.068010 TGGTTAATGGTTAGATTATGCCTGG 58.932 40.000 0.00 0.00 0.00 4.45
2322 8715 9.683069 AACTTTAAGTTATGCTTGACATTGAAG 57.317 29.630 8.76 4.41 36.52 3.02
2329 8722 4.389890 TGCTTGACATTGAAGTTTTGCT 57.610 36.364 0.00 0.00 0.00 3.91
2330 8723 4.114073 TGCTTGACATTGAAGTTTTGCTG 58.886 39.130 0.00 0.00 0.00 4.41
2332 8725 4.567959 GCTTGACATTGAAGTTTTGCTGTT 59.432 37.500 0.00 0.00 0.00 3.16
2334 8727 4.431809 TGACATTGAAGTTTTGCTGTTGG 58.568 39.130 0.00 0.00 0.00 3.77
2336 8729 4.831107 ACATTGAAGTTTTGCTGTTGGTT 58.169 34.783 0.00 0.00 0.00 3.67
2338 8731 6.402222 ACATTGAAGTTTTGCTGTTGGTTAA 58.598 32.000 0.00 0.00 0.00 2.01
2339 8732 7.047271 ACATTGAAGTTTTGCTGTTGGTTAAT 58.953 30.769 0.00 0.00 0.00 1.40
2340 8733 6.900568 TTGAAGTTTTGCTGTTGGTTAATG 57.099 33.333 0.00 0.00 0.00 1.90
2341 8734 5.355596 TGAAGTTTTGCTGTTGGTTAATGG 58.644 37.500 0.00 0.00 0.00 3.16
2342 8735 5.127845 TGAAGTTTTGCTGTTGGTTAATGGA 59.872 36.000 0.00 0.00 0.00 3.41
2344 8737 6.909550 AGTTTTGCTGTTGGTTAATGGATA 57.090 33.333 0.00 0.00 0.00 2.59
2435 8828 7.510549 TTTGACTAAAAGAGGAACCTTCATG 57.489 36.000 0.00 0.00 0.00 3.07
2490 8883 1.004745 CCCCCTTGTGTTCTGCTATGT 59.995 52.381 0.00 0.00 0.00 2.29
2582 8981 8.893563 TCATGGGATTTTAAAGAATTGGTAGT 57.106 30.769 0.00 0.00 0.00 2.73
2594 8993 8.928270 AAAGAATTGGTAGTATTAGTCAGTCG 57.072 34.615 0.00 0.00 0.00 4.18
2602 9001 5.979288 AGTATTAGTCAGTCGAACCTTGT 57.021 39.130 0.00 0.00 0.00 3.16
2839 9242 5.994668 GGTGGATCCTATCTCTGAATTTGTC 59.005 44.000 14.23 0.00 0.00 3.18
2845 9248 5.652452 TCCTATCTCTGAATTTGTCGTCTGA 59.348 40.000 0.00 0.00 0.00 3.27
2859 9262 2.802247 TCGTCTGACAGCTGAACATTTG 59.198 45.455 23.35 11.47 0.00 2.32
2965 9370 8.910944 GTTCCTACATGTTATCTCTTGGTACTA 58.089 37.037 2.30 0.00 0.00 1.82
3103 9508 8.896744 GGTACAAAAACCTCTTACTACTGTTTT 58.103 33.333 0.00 0.00 39.92 2.43
3220 9625 2.400467 ACGGGACTAGATAGGGCAAT 57.600 50.000 0.00 0.00 0.00 3.56
3239 9644 5.395546 GGCAATAATGGACATTCAATGGTGT 60.396 40.000 1.58 0.00 32.50 4.16
3249 9654 0.743688 TCAATGGTGTGGTGTTGCAC 59.256 50.000 0.00 0.00 35.07 4.57
3357 9762 4.323104 GGTTGGTAATAATGGCAGCCAAAA 60.323 41.667 20.84 10.15 36.95 2.44
3365 9770 7.660030 AATAATGGCAGCCAAAATAGTACTT 57.340 32.000 20.84 7.32 36.95 2.24
3466 10034 7.147897 CCCTTTTTGTTAGGTCTTCTTGAACTT 60.148 37.037 0.00 0.00 40.40 2.66
3498 10066 2.016318 TCATGCAGTGAATTAAGCCGG 58.984 47.619 0.00 0.00 32.78 6.13
3521 10089 7.817478 CCGGTGATACTATATTGCTGTGAATAA 59.183 37.037 0.00 0.00 0.00 1.40
3589 10172 4.931002 GCTCTGAATGCTATTCTCTCATCC 59.069 45.833 9.34 0.00 0.00 3.51
3647 10230 7.758528 AGCAGATGCAAAAATTCTCAAAGTATC 59.241 33.333 7.68 0.00 45.16 2.24
3648 10231 7.758528 GCAGATGCAAAAATTCTCAAAGTATCT 59.241 33.333 0.00 0.00 41.59 1.98
3651 10234 9.727627 GATGCAAAAATTCTCAAAGTATCTAGG 57.272 33.333 0.00 0.00 0.00 3.02
3652 10235 8.862325 TGCAAAAATTCTCAAAGTATCTAGGA 57.138 30.769 0.00 0.00 0.00 2.94
3653 10236 9.466497 TGCAAAAATTCTCAAAGTATCTAGGAT 57.534 29.630 0.00 0.00 0.00 3.24
3729 10323 2.354103 GCTCTGTGCTGACAACAGGATA 60.354 50.000 7.31 0.00 45.40 2.59
3741 10335 6.806751 TGACAACAGGATAGTGTAAGCTATC 58.193 40.000 4.92 4.92 43.92 2.08
3785 10379 2.412870 CACATGTGTCACGTGGTACAT 58.587 47.619 25.31 23.71 44.52 2.29
3864 10458 5.947228 TTTGCGAGATCACTCAAGAATTT 57.053 34.783 0.00 0.00 42.72 1.82
3918 10518 4.580995 ACTTGCTACTAGATGCGACTATGT 59.419 41.667 0.00 0.00 0.00 2.29
3957 10557 2.158682 TGTTTGTGTGTGGCTGATAGGT 60.159 45.455 0.00 0.00 0.00 3.08
3993 10594 1.352017 AGGGGAACGTTTAAATCGGGT 59.648 47.619 0.46 3.17 0.00 5.28
4016 10617 2.824489 ATCTCAGCGCTCGGTCGA 60.824 61.111 7.13 0.00 0.00 4.20
4028 10629 0.034380 TCGGTCGATCACCTCCTCTT 60.034 55.000 11.12 0.00 44.21 2.85
4029 10630 0.382515 CGGTCGATCACCTCCTCTTC 59.617 60.000 11.12 0.00 44.21 2.87
4037 10638 4.702831 GATCACCTCCTCTTCTCCATTTC 58.297 47.826 0.00 0.00 0.00 2.17
4040 10735 2.226013 ACCTCCTCTTCTCCATTTCCCT 60.226 50.000 0.00 0.00 0.00 4.20
4046 10741 4.657969 CCTCTTCTCCATTTCCCTATGTCT 59.342 45.833 0.00 0.00 0.00 3.41
4049 10744 3.114606 TCTCCATTTCCCTATGTCTGCA 58.885 45.455 0.00 0.00 0.00 4.41
4147 10861 0.888619 TGTGAGCTAGTGACGGAAGG 59.111 55.000 0.00 0.00 0.00 3.46
4220 10960 2.484770 GGTGTTGTTGTGAGCAGAGGTA 60.485 50.000 0.00 0.00 0.00 3.08
4260 11000 2.240500 GGCTATTGCTGCGGAGTCG 61.241 63.158 5.62 0.00 39.59 4.18
4272 11012 1.215647 GGAGTCGAGTCGGTGCATT 59.784 57.895 13.54 0.00 0.00 3.56
4312 11052 1.134965 GCTACGACTCAGGCATGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
4349 11089 1.226323 GCTACGACTCACATCGCGT 60.226 57.895 5.77 0.00 46.22 6.01
4365 11105 0.179176 GCGTGCTGTTGTGTGTCAAA 60.179 50.000 0.00 0.00 37.81 2.69
4370 11110 1.129624 GCTGTTGTGTGTCAAACGACA 59.870 47.619 14.46 14.46 41.13 4.35
4531 11300 1.064825 CCCGGGCCTCCTTTGTATAT 58.935 55.000 8.08 0.00 0.00 0.86
4536 11305 4.315803 CGGGCCTCCTTTGTATATTGTAG 58.684 47.826 0.84 0.00 0.00 2.74
4557 11326 4.564940 GCAACTGCTACGGTACTATACT 57.435 45.455 0.00 0.00 38.21 2.12
4558 11327 5.679734 GCAACTGCTACGGTACTATACTA 57.320 43.478 0.00 0.00 38.21 1.82
4559 11328 6.251655 GCAACTGCTACGGTACTATACTAT 57.748 41.667 0.00 0.00 38.21 2.12
4560 11329 7.369803 GCAACTGCTACGGTACTATACTATA 57.630 40.000 0.00 0.00 38.21 1.31
4561 11330 7.810658 GCAACTGCTACGGTACTATACTATAA 58.189 38.462 0.00 0.00 38.21 0.98
4562 11331 8.457261 GCAACTGCTACGGTACTATACTATAAT 58.543 37.037 0.00 0.00 38.21 1.28
4580 11349 5.887214 ATAATAAACAAGGGATTTGGGCC 57.113 39.130 0.00 0.00 41.25 5.80
4582 11351 1.644509 AAACAAGGGATTTGGGCCTC 58.355 50.000 4.53 0.00 41.25 4.70
4584 11353 0.712380 ACAAGGGATTTGGGCCTCAT 59.288 50.000 4.53 0.00 41.25 2.90
4597 11742 2.291217 GGGCCTCATGACTCTTTTTCCT 60.291 50.000 0.84 0.00 0.00 3.36
4653 11798 7.118390 ACACTCTACACATGCAATTTTAGAGTC 59.882 37.037 20.32 0.00 42.38 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 122 3.120820 CGTGCGTGTAAGAACTTGCAATA 60.121 43.478 0.00 0.00 37.89 1.90
155 172 5.990996 TGCGCTATCAATCTATTTCATGTCA 59.009 36.000 9.73 0.00 0.00 3.58
156 173 6.471976 TGCGCTATCAATCTATTTCATGTC 57.528 37.500 9.73 0.00 0.00 3.06
157 174 6.072838 CCTTGCGCTATCAATCTATTTCATGT 60.073 38.462 9.73 0.00 0.00 3.21
158 175 6.312487 CCTTGCGCTATCAATCTATTTCATG 58.688 40.000 9.73 0.00 0.00 3.07
159 176 5.413833 CCCTTGCGCTATCAATCTATTTCAT 59.586 40.000 9.73 0.00 0.00 2.57
160 177 4.756642 CCCTTGCGCTATCAATCTATTTCA 59.243 41.667 9.73 0.00 0.00 2.69
333 360 0.238289 CAACAATGGCGTCGCTTCTT 59.762 50.000 18.11 5.46 0.00 2.52
350 377 1.186200 CGAGGACAGAGGTGGATCAA 58.814 55.000 0.00 0.00 0.00 2.57
351 378 1.323271 GCGAGGACAGAGGTGGATCA 61.323 60.000 0.00 0.00 0.00 2.92
352 379 1.439644 GCGAGGACAGAGGTGGATC 59.560 63.158 0.00 0.00 0.00 3.36
353 380 2.060980 GGCGAGGACAGAGGTGGAT 61.061 63.158 0.00 0.00 0.00 3.41
354 381 2.680352 GGCGAGGACAGAGGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
363 390 2.024871 CATCGACGAGGCGAGGAC 59.975 66.667 7.25 0.00 43.94 3.85
371 398 1.662608 CAGGGATCCCATCGACGAG 59.337 63.158 32.69 7.71 38.92 4.18
382 409 2.002505 TACCTAGCAGAGCAGGGATC 57.997 55.000 10.63 0.00 33.43 3.36
383 410 2.478872 TTACCTAGCAGAGCAGGGAT 57.521 50.000 10.63 0.00 33.43 3.85
384 411 2.042464 CATTACCTAGCAGAGCAGGGA 58.958 52.381 10.63 1.75 33.43 4.20
433 464 2.345991 CCGAAGCGAAAGGGGACA 59.654 61.111 0.00 0.00 0.00 4.02
436 467 2.746277 CCACCGAAGCGAAAGGGG 60.746 66.667 0.00 0.00 0.00 4.79
482 513 0.182061 TCCTGCTTGGATGGATCAGC 59.818 55.000 0.00 0.00 40.56 4.26
573 604 3.880047 TTCGCCTAGCAGCTTACTAAA 57.120 42.857 0.00 0.00 0.00 1.85
581 612 1.262683 GACATCATTTCGCCTAGCAGC 59.737 52.381 0.00 0.00 0.00 5.25
582 613 2.554142 TGACATCATTTCGCCTAGCAG 58.446 47.619 0.00 0.00 0.00 4.24
584 615 3.133691 TGATGACATCATTTCGCCTAGC 58.866 45.455 14.24 0.00 36.57 3.42
723 756 9.041354 TGGAATTTTTGGGCTTTGTTACTATAT 57.959 29.630 0.00 0.00 0.00 0.86
725 758 7.309770 TGGAATTTTTGGGCTTTGTTACTAT 57.690 32.000 0.00 0.00 0.00 2.12
730 763 5.046288 TGATGGAATTTTTGGGCTTTGTT 57.954 34.783 0.00 0.00 0.00 2.83
747 780 0.734889 GCCACGGAGTCAATTGATGG 59.265 55.000 17.24 17.24 41.61 3.51
801 834 7.030768 GGCCGTACATAATAAAAGAGCAAAAA 58.969 34.615 0.00 0.00 0.00 1.94
802 835 6.404954 GGGCCGTACATAATAAAAGAGCAAAA 60.405 38.462 0.00 0.00 0.00 2.44
803 836 5.066764 GGGCCGTACATAATAAAAGAGCAAA 59.933 40.000 0.00 0.00 0.00 3.68
804 837 4.577283 GGGCCGTACATAATAAAAGAGCAA 59.423 41.667 0.00 0.00 0.00 3.91
805 838 4.131596 GGGCCGTACATAATAAAAGAGCA 58.868 43.478 0.00 0.00 0.00 4.26
806 839 4.131596 TGGGCCGTACATAATAAAAGAGC 58.868 43.478 0.00 0.00 0.00 4.09
807 840 5.008316 GGTTGGGCCGTACATAATAAAAGAG 59.992 44.000 10.31 0.00 0.00 2.85
808 841 4.883006 GGTTGGGCCGTACATAATAAAAGA 59.117 41.667 10.31 0.00 0.00 2.52
809 842 4.641094 TGGTTGGGCCGTACATAATAAAAG 59.359 41.667 10.31 0.00 41.21 2.27
810 843 4.597004 TGGTTGGGCCGTACATAATAAAA 58.403 39.130 10.31 0.00 41.21 1.52
811 844 4.232188 TGGTTGGGCCGTACATAATAAA 57.768 40.909 10.31 0.00 41.21 1.40
812 845 3.928005 TGGTTGGGCCGTACATAATAA 57.072 42.857 10.31 0.00 41.21 1.40
813 846 3.928005 TTGGTTGGGCCGTACATAATA 57.072 42.857 10.31 0.00 41.21 0.98
814 847 2.810870 TTGGTTGGGCCGTACATAAT 57.189 45.000 10.31 0.00 41.21 1.28
815 848 2.810870 ATTGGTTGGGCCGTACATAA 57.189 45.000 10.31 5.72 41.21 1.90
816 849 5.765576 ATATATTGGTTGGGCCGTACATA 57.234 39.130 10.31 2.14 41.21 2.29
817 850 4.650972 ATATATTGGTTGGGCCGTACAT 57.349 40.909 10.31 0.16 41.21 2.29
818 851 4.594062 ACTATATATTGGTTGGGCCGTACA 59.406 41.667 10.31 0.63 41.21 2.90
819 852 5.156608 ACTATATATTGGTTGGGCCGTAC 57.843 43.478 0.00 0.00 41.21 3.67
820 853 6.269538 TGTTACTATATATTGGTTGGGCCGTA 59.730 38.462 0.00 0.00 41.21 4.02
821 854 5.072058 TGTTACTATATATTGGTTGGGCCGT 59.928 40.000 0.00 0.00 41.21 5.68
822 855 5.553123 TGTTACTATATATTGGTTGGGCCG 58.447 41.667 0.00 0.00 41.21 6.13
823 856 7.523216 GCTTTGTTACTATATATTGGTTGGGCC 60.523 40.741 0.00 0.00 37.90 5.80
824 857 7.368059 GCTTTGTTACTATATATTGGTTGGGC 58.632 38.462 0.00 0.00 0.00 5.36
825 858 7.039993 GGGCTTTGTTACTATATATTGGTTGGG 60.040 40.741 0.00 0.00 0.00 4.12
826 859 7.504238 TGGGCTTTGTTACTATATATTGGTTGG 59.496 37.037 0.00 0.00 0.00 3.77
827 860 8.458573 TGGGCTTTGTTACTATATATTGGTTG 57.541 34.615 0.00 0.00 0.00 3.77
828 861 9.482175 TTTGGGCTTTGTTACTATATATTGGTT 57.518 29.630 0.00 0.00 0.00 3.67
829 862 9.482175 TTTTGGGCTTTGTTACTATATATTGGT 57.518 29.630 0.00 0.00 0.00 3.67
835 868 9.041354 TGGAATTTTTGGGCTTTGTTACTATAT 57.959 29.630 0.00 0.00 0.00 0.86
836 869 8.423906 TGGAATTTTTGGGCTTTGTTACTATA 57.576 30.769 0.00 0.00 0.00 1.31
837 870 7.309770 TGGAATTTTTGGGCTTTGTTACTAT 57.690 32.000 0.00 0.00 0.00 2.12
838 871 6.732896 TGGAATTTTTGGGCTTTGTTACTA 57.267 33.333 0.00 0.00 0.00 1.82
839 872 5.622346 TGGAATTTTTGGGCTTTGTTACT 57.378 34.783 0.00 0.00 0.00 2.24
840 873 5.994668 TGATGGAATTTTTGGGCTTTGTTAC 59.005 36.000 0.00 0.00 0.00 2.50
841 874 6.179906 TGATGGAATTTTTGGGCTTTGTTA 57.820 33.333 0.00 0.00 0.00 2.41
842 875 5.046288 TGATGGAATTTTTGGGCTTTGTT 57.954 34.783 0.00 0.00 0.00 2.83
843 876 4.703379 TGATGGAATTTTTGGGCTTTGT 57.297 36.364 0.00 0.00 0.00 2.83
844 877 6.207025 TCAATTGATGGAATTTTTGGGCTTTG 59.793 34.615 3.38 0.00 31.41 2.77
845 878 6.207221 GTCAATTGATGGAATTTTTGGGCTTT 59.793 34.615 12.12 0.00 31.41 3.51
846 879 5.706833 GTCAATTGATGGAATTTTTGGGCTT 59.293 36.000 12.12 0.00 31.41 4.35
847 880 5.013391 AGTCAATTGATGGAATTTTTGGGCT 59.987 36.000 12.12 0.00 31.41 5.19
848 881 5.247862 AGTCAATTGATGGAATTTTTGGGC 58.752 37.500 12.12 0.00 31.41 5.36
849 882 5.876460 GGAGTCAATTGATGGAATTTTTGGG 59.124 40.000 12.12 0.00 31.41 4.12
850 883 5.577945 CGGAGTCAATTGATGGAATTTTTGG 59.422 40.000 12.12 0.00 31.41 3.28
851 884 6.089820 CACGGAGTCAATTGATGGAATTTTTG 59.910 38.462 12.12 0.00 41.61 2.44
852 885 6.158598 CACGGAGTCAATTGATGGAATTTTT 58.841 36.000 12.12 0.00 41.61 1.94
853 886 5.336690 CCACGGAGTCAATTGATGGAATTTT 60.337 40.000 16.78 0.00 41.61 1.82
854 887 4.158394 CCACGGAGTCAATTGATGGAATTT 59.842 41.667 16.78 0.00 41.61 1.82
855 888 3.696051 CCACGGAGTCAATTGATGGAATT 59.304 43.478 16.78 0.00 41.61 2.17
856 889 3.282021 CCACGGAGTCAATTGATGGAAT 58.718 45.455 16.78 0.00 41.61 3.01
857 890 2.710377 CCACGGAGTCAATTGATGGAA 58.290 47.619 16.78 0.00 41.61 3.53
858 891 1.678728 GCCACGGAGTCAATTGATGGA 60.679 52.381 23.29 0.00 41.61 3.41
859 892 0.734889 GCCACGGAGTCAATTGATGG 59.265 55.000 17.24 17.24 41.61 3.51
860 893 0.734889 GGCCACGGAGTCAATTGATG 59.265 55.000 12.12 5.22 41.61 3.07
861 894 0.394352 GGGCCACGGAGTCAATTGAT 60.394 55.000 12.12 0.66 41.61 2.57
862 895 1.002624 GGGCCACGGAGTCAATTGA 60.003 57.895 4.39 3.38 41.61 2.57
863 896 0.893270 TTGGGCCACGGAGTCAATTG 60.893 55.000 5.23 0.00 41.61 2.32
864 897 0.039618 ATTGGGCCACGGAGTCAATT 59.960 50.000 5.23 0.00 41.61 2.32
865 898 0.680921 CATTGGGCCACGGAGTCAAT 60.681 55.000 5.23 0.00 41.61 2.57
866 899 1.303236 CATTGGGCCACGGAGTCAA 60.303 57.895 5.23 0.00 41.61 3.18
867 900 2.350895 CATTGGGCCACGGAGTCA 59.649 61.111 5.23 0.00 41.61 3.41
868 901 2.270874 ATCCATTGGGCCACGGAGTC 62.271 60.000 24.12 0.00 41.61 3.36
870 903 0.182537 TTATCCATTGGGCCACGGAG 59.817 55.000 24.12 7.68 0.00 4.63
871 904 0.182537 CTTATCCATTGGGCCACGGA 59.817 55.000 22.70 22.70 0.00 4.69
872 905 0.823356 CCTTATCCATTGGGCCACGG 60.823 60.000 5.23 10.78 0.00 4.94
873 906 1.455383 GCCTTATCCATTGGGCCACG 61.455 60.000 5.23 0.00 38.77 4.94
874 907 1.455383 CGCCTTATCCATTGGGCCAC 61.455 60.000 5.23 0.00 41.35 5.01
875 908 1.152777 CGCCTTATCCATTGGGCCA 60.153 57.895 0.00 0.00 41.35 5.36
876 909 2.564721 GCGCCTTATCCATTGGGCC 61.565 63.158 2.09 0.00 41.35 5.80
877 910 1.529244 AGCGCCTTATCCATTGGGC 60.529 57.895 2.29 0.00 41.02 5.36
878 911 1.174712 CCAGCGCCTTATCCATTGGG 61.175 60.000 2.29 0.00 0.00 4.12
879 912 0.466189 ACCAGCGCCTTATCCATTGG 60.466 55.000 2.29 4.05 0.00 3.16
880 913 0.947244 GACCAGCGCCTTATCCATTG 59.053 55.000 2.29 0.00 0.00 2.82
881 914 0.839946 AGACCAGCGCCTTATCCATT 59.160 50.000 2.29 0.00 0.00 3.16
882 915 1.344763 GTAGACCAGCGCCTTATCCAT 59.655 52.381 2.29 0.00 0.00 3.41
883 916 0.750850 GTAGACCAGCGCCTTATCCA 59.249 55.000 2.29 0.00 0.00 3.41
884 917 0.318784 CGTAGACCAGCGCCTTATCC 60.319 60.000 2.29 0.00 0.00 2.59
885 918 0.666913 TCGTAGACCAGCGCCTTATC 59.333 55.000 2.29 0.00 0.00 1.75
886 919 1.108776 TTCGTAGACCAGCGCCTTAT 58.891 50.000 2.29 0.00 34.32 1.73
887 920 0.889994 TTTCGTAGACCAGCGCCTTA 59.110 50.000 2.29 0.00 34.32 2.69
888 921 0.669625 GTTTCGTAGACCAGCGCCTT 60.670 55.000 2.29 0.00 34.32 4.35
889 922 1.080025 GTTTCGTAGACCAGCGCCT 60.080 57.895 2.29 0.00 34.32 5.52
890 923 2.098831 GGTTTCGTAGACCAGCGCC 61.099 63.158 2.29 0.00 37.14 6.53
891 924 1.373748 TGGTTTCGTAGACCAGCGC 60.374 57.895 0.00 0.00 42.06 5.92
892 925 4.979204 TGGTTTCGTAGACCAGCG 57.021 55.556 3.75 0.00 42.06 5.18
895 928 4.082190 CAGAATCTCTGGTTTCGTAGACCA 60.082 45.833 7.01 7.01 44.59 4.02
896 929 4.425520 CAGAATCTCTGGTTTCGTAGACC 58.574 47.826 0.00 0.00 40.71 3.85
978 1446 3.816398 AAGAGAAAAAGGAGGAAGGGG 57.184 47.619 0.00 0.00 0.00 4.79
1003 1471 3.343617 CGACTCCCCTGCAAAAAGATTA 58.656 45.455 0.00 0.00 0.00 1.75
1004 1472 2.162681 CGACTCCCCTGCAAAAAGATT 58.837 47.619 0.00 0.00 0.00 2.40
1005 1473 1.826385 CGACTCCCCTGCAAAAAGAT 58.174 50.000 0.00 0.00 0.00 2.40
1017 1495 2.661594 GAATTTTGTGTTGCGACTCCC 58.338 47.619 5.50 0.00 0.00 4.30
1029 1507 2.545742 GGGCTTTGCACTCGAATTTTGT 60.546 45.455 0.00 0.00 0.00 2.83
1035 1513 0.749818 TGTTGGGCTTTGCACTCGAA 60.750 50.000 0.00 0.00 30.56 3.71
1053 1532 5.048364 CCCACTTCTTCTCTATATCGGTCTG 60.048 48.000 0.00 0.00 0.00 3.51
1059 1538 5.083821 AGGAGCCCACTTCTTCTCTATATC 58.916 45.833 0.00 0.00 0.00 1.63
1150 3869 2.920384 GGATCTCCTCCCGCTCCC 60.920 72.222 0.00 0.00 38.19 4.30
1273 3998 0.105709 GAAGGGAGAGGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
1288 4013 6.032565 CGACGCATAAATAACTAGATCGAAGG 59.967 42.308 0.00 0.00 0.00 3.46
1309 4034 5.632347 CAGGGTAATTAATAAGTAGGCGACG 59.368 44.000 0.00 0.00 0.00 5.12
1340 4065 3.555547 CAGGTTTTTCTTTTTGCGGGAAG 59.444 43.478 0.00 0.00 0.00 3.46
1341 4066 3.055747 ACAGGTTTTTCTTTTTGCGGGAA 60.056 39.130 0.00 0.00 0.00 3.97
1342 4067 2.498078 ACAGGTTTTTCTTTTTGCGGGA 59.502 40.909 0.00 0.00 0.00 5.14
1343 4068 2.899976 ACAGGTTTTTCTTTTTGCGGG 58.100 42.857 0.00 0.00 0.00 6.13
1344 4069 4.180817 AGAACAGGTTTTTCTTTTTGCGG 58.819 39.130 0.00 0.00 28.36 5.69
1345 4070 5.550070 CAAGAACAGGTTTTTCTTTTTGCG 58.450 37.500 0.00 0.00 40.59 4.85
1346 4071 5.323900 GCAAGAACAGGTTTTTCTTTTTGC 58.676 37.500 0.00 0.00 40.59 3.68
1347 4072 5.120053 ACGCAAGAACAGGTTTTTCTTTTTG 59.880 36.000 0.00 0.00 40.59 2.44
1348 4073 5.234752 ACGCAAGAACAGGTTTTTCTTTTT 58.765 33.333 0.00 0.00 40.59 1.94
1349 4074 4.816392 ACGCAAGAACAGGTTTTTCTTTT 58.184 34.783 0.00 0.00 40.59 2.27
1350 4075 4.082463 TGACGCAAGAACAGGTTTTTCTTT 60.082 37.500 0.00 0.00 40.59 2.52
1351 4076 3.442273 TGACGCAAGAACAGGTTTTTCTT 59.558 39.130 0.00 0.00 42.79 2.52
1352 4077 3.013921 TGACGCAAGAACAGGTTTTTCT 58.986 40.909 0.00 0.00 43.62 2.52
1353 4078 3.414549 TGACGCAAGAACAGGTTTTTC 57.585 42.857 0.00 0.00 43.62 2.29
1354 4079 4.111916 CAATGACGCAAGAACAGGTTTTT 58.888 39.130 0.00 0.00 43.62 1.94
1355 4080 3.705604 CAATGACGCAAGAACAGGTTTT 58.294 40.909 0.00 0.00 43.62 2.43
1356 4081 2.543653 GCAATGACGCAAGAACAGGTTT 60.544 45.455 0.00 0.00 43.62 3.27
1357 4082 1.001378 GCAATGACGCAAGAACAGGTT 60.001 47.619 0.00 0.00 43.62 3.50
1358 4083 0.593128 GCAATGACGCAAGAACAGGT 59.407 50.000 0.00 0.00 43.62 4.00
1381 4106 9.924010 AGACTACCATACTAGTAATCCCATATC 57.076 37.037 6.70 0.00 0.00 1.63
1385 4110 6.919158 ACAGACTACCATACTAGTAATCCCA 58.081 40.000 6.70 0.00 0.00 4.37
1387 4112 9.530633 CAAAACAGACTACCATACTAGTAATCC 57.469 37.037 6.70 0.00 0.00 3.01
1389 4114 8.759782 AGCAAAACAGACTACCATACTAGTAAT 58.240 33.333 6.70 0.00 0.00 1.89
1390 4115 8.130671 AGCAAAACAGACTACCATACTAGTAA 57.869 34.615 6.70 0.00 0.00 2.24
1391 4116 7.713734 AGCAAAACAGACTACCATACTAGTA 57.286 36.000 4.77 4.77 0.00 1.82
1392 4117 6.607004 AGCAAAACAGACTACCATACTAGT 57.393 37.500 0.00 0.00 0.00 2.57
1393 4118 8.251721 AGTTAGCAAAACAGACTACCATACTAG 58.748 37.037 4.96 0.00 0.00 2.57
1396 7716 6.872020 TCAGTTAGCAAAACAGACTACCATAC 59.128 38.462 4.96 0.00 0.00 2.39
1427 7748 6.594159 TCCAAATTCTAAACCGAATCTCTCAC 59.406 38.462 0.00 0.00 32.69 3.51
1443 7764 5.183140 CGAACAACCTAACCATCCAAATTCT 59.817 40.000 0.00 0.00 0.00 2.40
1469 7790 5.989168 TCATATACTACACATCAAAAGGGCG 59.011 40.000 0.00 0.00 0.00 6.13
1471 7792 6.710744 GGGTCATATACTACACATCAAAAGGG 59.289 42.308 0.00 0.00 0.00 3.95
1497 7824 1.276421 ACGATGTGCTAGCAAGTTCCT 59.724 47.619 21.29 0.00 0.00 3.36
1526 7853 3.315191 AGCACAACATAACAGAACCACAC 59.685 43.478 0.00 0.00 0.00 3.82
1555 7882 3.120786 GCATCACAATTCACAAGCAAAGC 60.121 43.478 0.00 0.00 0.00 3.51
1556 7883 4.149922 CAGCATCACAATTCACAAGCAAAG 59.850 41.667 0.00 0.00 0.00 2.77
1557 7884 4.052608 CAGCATCACAATTCACAAGCAAA 58.947 39.130 0.00 0.00 0.00 3.68
1781 8149 9.865321 AACGTAGCAAGTTAGAAGTTATATGAA 57.135 29.630 0.00 0.00 0.00 2.57
1782 8150 9.512435 GAACGTAGCAAGTTAGAAGTTATATGA 57.488 33.333 0.00 0.00 31.14 2.15
1783 8151 8.469902 CGAACGTAGCAAGTTAGAAGTTATATG 58.530 37.037 0.00 0.00 31.14 1.78
1784 8152 7.167136 GCGAACGTAGCAAGTTAGAAGTTATAT 59.833 37.037 10.55 0.00 34.19 0.86
1785 8153 6.470235 GCGAACGTAGCAAGTTAGAAGTTATA 59.530 38.462 10.55 0.00 34.19 0.98
1786 8154 5.287992 GCGAACGTAGCAAGTTAGAAGTTAT 59.712 40.000 10.55 0.00 34.19 1.89
1787 8155 4.618489 GCGAACGTAGCAAGTTAGAAGTTA 59.382 41.667 10.55 0.00 34.19 2.24
1788 8156 3.427863 GCGAACGTAGCAAGTTAGAAGTT 59.572 43.478 10.55 0.00 34.19 2.66
1789 8157 2.985139 GCGAACGTAGCAAGTTAGAAGT 59.015 45.455 10.55 0.00 34.19 3.01
1790 8158 3.243336 AGCGAACGTAGCAAGTTAGAAG 58.757 45.455 16.58 0.00 37.01 2.85
1791 8159 3.293311 AGCGAACGTAGCAAGTTAGAA 57.707 42.857 16.58 0.00 37.01 2.10
1792 8160 2.984471 CAAGCGAACGTAGCAAGTTAGA 59.016 45.455 16.58 0.00 37.01 2.10
1793 8161 2.472397 GCAAGCGAACGTAGCAAGTTAG 60.472 50.000 16.58 0.00 37.01 2.34
1794 8162 1.458064 GCAAGCGAACGTAGCAAGTTA 59.542 47.619 16.58 0.00 37.01 2.24
1795 8163 0.234884 GCAAGCGAACGTAGCAAGTT 59.765 50.000 16.58 1.79 37.01 2.66
1796 8164 0.600255 AGCAAGCGAACGTAGCAAGT 60.600 50.000 16.58 0.95 37.01 3.16
1797 8165 1.346365 TAGCAAGCGAACGTAGCAAG 58.654 50.000 16.58 9.97 37.01 4.01
1798 8166 1.785768 TTAGCAAGCGAACGTAGCAA 58.214 45.000 16.58 1.15 37.01 3.91
1799 8167 1.658596 CATTAGCAAGCGAACGTAGCA 59.341 47.619 16.58 0.00 37.01 3.49
1800 8168 1.592350 GCATTAGCAAGCGAACGTAGC 60.592 52.381 7.74 7.74 41.58 3.58
1801 8169 1.004927 GGCATTAGCAAGCGAACGTAG 60.005 52.381 0.00 0.00 44.61 3.51
1802 8170 1.003851 GGCATTAGCAAGCGAACGTA 58.996 50.000 0.00 0.00 44.61 3.57
1803 8171 0.953471 TGGCATTAGCAAGCGAACGT 60.953 50.000 0.00 0.00 44.61 3.99
1804 8172 0.378257 ATGGCATTAGCAAGCGAACG 59.622 50.000 0.00 0.00 44.61 3.95
1805 8173 2.111041 GATGGCATTAGCAAGCGAAC 57.889 50.000 0.00 0.00 44.61 3.95
1809 8177 0.740737 AACCGATGGCATTAGCAAGC 59.259 50.000 0.00 0.00 44.61 4.01
1810 8178 3.548818 GCTAAACCGATGGCATTAGCAAG 60.549 47.826 19.62 8.10 44.09 4.01
1811 8179 2.357637 GCTAAACCGATGGCATTAGCAA 59.642 45.455 19.62 0.00 44.09 3.91
1812 8180 1.946768 GCTAAACCGATGGCATTAGCA 59.053 47.619 19.62 0.00 44.09 3.49
1813 8181 1.266989 GGCTAAACCGATGGCATTAGC 59.733 52.381 17.38 17.38 44.01 3.09
1814 8182 2.851195 AGGCTAAACCGATGGCATTAG 58.149 47.619 0.00 0.60 46.52 1.73
1815 8183 3.118038 AGAAGGCTAAACCGATGGCATTA 60.118 43.478 0.00 0.00 46.52 1.90
1816 8184 2.024414 GAAGGCTAAACCGATGGCATT 58.976 47.619 0.00 0.00 46.52 3.56
1817 8185 1.212935 AGAAGGCTAAACCGATGGCAT 59.787 47.619 0.00 0.00 46.52 4.40
1818 8186 0.618458 AGAAGGCTAAACCGATGGCA 59.382 50.000 0.00 0.00 46.52 4.92
1819 8187 1.017387 CAGAAGGCTAAACCGATGGC 58.983 55.000 0.00 0.00 46.52 4.40
1820 8188 2.403252 ACAGAAGGCTAAACCGATGG 57.597 50.000 0.00 0.00 46.52 3.51
1821 8189 4.124851 AGTACAGAAGGCTAAACCGATG 57.875 45.455 0.00 0.00 46.52 3.84
1822 8190 4.504858 CAAGTACAGAAGGCTAAACCGAT 58.495 43.478 0.00 0.00 46.52 4.18
1823 8191 3.306502 CCAAGTACAGAAGGCTAAACCGA 60.307 47.826 0.00 0.00 46.52 4.69
1824 8192 3.000727 CCAAGTACAGAAGGCTAAACCG 58.999 50.000 0.00 0.00 46.52 4.44
1825 8193 2.747989 GCCAAGTACAGAAGGCTAAACC 59.252 50.000 9.70 0.00 43.70 3.27
1832 8200 3.118629 TGCAGATAGCCAAGTACAGAAGG 60.119 47.826 0.00 0.00 44.83 3.46
1833 8201 4.128925 TGCAGATAGCCAAGTACAGAAG 57.871 45.455 0.00 0.00 44.83 2.85
1834 8202 4.222810 TCTTGCAGATAGCCAAGTACAGAA 59.777 41.667 0.00 0.00 44.83 3.02
1835 8203 3.769300 TCTTGCAGATAGCCAAGTACAGA 59.231 43.478 0.00 0.00 44.83 3.41
1836 8204 4.128925 TCTTGCAGATAGCCAAGTACAG 57.871 45.455 0.00 0.00 44.83 2.74
1837 8205 4.162131 TCATCTTGCAGATAGCCAAGTACA 59.838 41.667 0.00 0.00 44.83 2.90
1838 8206 4.697514 TCATCTTGCAGATAGCCAAGTAC 58.302 43.478 0.00 0.00 44.83 2.73
1839 8207 4.651045 TCTCATCTTGCAGATAGCCAAGTA 59.349 41.667 0.00 0.00 44.83 2.24
1840 8208 3.453717 TCTCATCTTGCAGATAGCCAAGT 59.546 43.478 0.00 0.00 44.83 3.16
1841 8209 3.808726 GTCTCATCTTGCAGATAGCCAAG 59.191 47.826 0.00 0.00 44.83 3.61
1842 8210 3.453717 AGTCTCATCTTGCAGATAGCCAA 59.546 43.478 0.00 0.00 44.83 4.52
1843 8211 3.036819 AGTCTCATCTTGCAGATAGCCA 58.963 45.455 0.00 0.00 44.83 4.75
1844 8212 3.749665 AGTCTCATCTTGCAGATAGCC 57.250 47.619 0.00 0.00 44.83 3.93
1845 8213 8.034215 ACATTATAGTCTCATCTTGCAGATAGC 58.966 37.037 0.00 0.00 45.96 2.97
1846 8214 9.356433 CACATTATAGTCTCATCTTGCAGATAG 57.644 37.037 0.00 0.00 32.12 2.08
1847 8215 8.309656 CCACATTATAGTCTCATCTTGCAGATA 58.690 37.037 0.00 0.00 32.12 1.98
1848 8216 7.160049 CCACATTATAGTCTCATCTTGCAGAT 58.840 38.462 0.00 0.00 34.74 2.90
1849 8217 6.519382 CCACATTATAGTCTCATCTTGCAGA 58.481 40.000 0.00 0.00 0.00 4.26
1850 8218 5.178996 GCCACATTATAGTCTCATCTTGCAG 59.821 44.000 0.00 0.00 0.00 4.41
1851 8219 5.059161 GCCACATTATAGTCTCATCTTGCA 58.941 41.667 0.00 0.00 0.00 4.08
1852 8220 4.151335 CGCCACATTATAGTCTCATCTTGC 59.849 45.833 0.00 0.00 0.00 4.01
1853 8221 5.292765 ACGCCACATTATAGTCTCATCTTG 58.707 41.667 0.00 0.00 0.00 3.02
1854 8222 5.537300 ACGCCACATTATAGTCTCATCTT 57.463 39.130 0.00 0.00 0.00 2.40
1855 8223 5.537300 AACGCCACATTATAGTCTCATCT 57.463 39.130 0.00 0.00 0.00 2.90
1856 8224 6.448006 ACTAACGCCACATTATAGTCTCATC 58.552 40.000 0.00 0.00 0.00 2.92
1857 8225 6.406692 ACTAACGCCACATTATAGTCTCAT 57.593 37.500 0.00 0.00 0.00 2.90
1858 8226 5.505159 CGACTAACGCCACATTATAGTCTCA 60.505 44.000 8.95 0.00 40.03 3.27
1859 8227 4.910456 CGACTAACGCCACATTATAGTCTC 59.090 45.833 8.95 0.00 40.03 3.36
1860 8228 4.337555 ACGACTAACGCCACATTATAGTCT 59.662 41.667 8.95 0.00 46.94 3.24
1861 8229 4.604976 ACGACTAACGCCACATTATAGTC 58.395 43.478 0.00 0.00 46.94 2.59
1862 8230 4.096833 TGACGACTAACGCCACATTATAGT 59.903 41.667 0.00 0.00 46.94 2.12
1863 8231 4.603985 TGACGACTAACGCCACATTATAG 58.396 43.478 0.00 0.00 46.94 1.31
1864 8232 4.096833 ACTGACGACTAACGCCACATTATA 59.903 41.667 0.00 0.00 46.94 0.98
1865 8233 3.119245 ACTGACGACTAACGCCACATTAT 60.119 43.478 0.00 0.00 46.94 1.28
1866 8234 2.229543 ACTGACGACTAACGCCACATTA 59.770 45.455 0.00 0.00 46.94 1.90
1867 8235 1.000506 ACTGACGACTAACGCCACATT 59.999 47.619 0.00 0.00 46.94 2.71
1868 8236 0.601558 ACTGACGACTAACGCCACAT 59.398 50.000 0.00 0.00 46.94 3.21
1869 8237 1.069022 GTACTGACGACTAACGCCACA 60.069 52.381 0.00 0.00 46.94 4.17
1870 8238 1.198637 AGTACTGACGACTAACGCCAC 59.801 52.381 0.00 0.00 46.94 5.01
1871 8239 1.198408 CAGTACTGACGACTAACGCCA 59.802 52.381 18.45 0.00 46.94 5.69
1872 8240 1.466167 TCAGTACTGACGACTAACGCC 59.534 52.381 21.74 0.00 46.94 5.68
1873 8241 2.888513 TCAGTACTGACGACTAACGC 57.111 50.000 21.74 0.00 46.94 4.84
1883 8251 1.037493 ACGCCACAAGTCAGTACTGA 58.963 50.000 21.74 21.74 35.62 3.41
1884 8252 1.865865 AACGCCACAAGTCAGTACTG 58.134 50.000 17.17 17.17 35.62 2.74
1885 8253 2.210116 CAAACGCCACAAGTCAGTACT 58.790 47.619 0.00 0.00 37.65 2.73
1886 8254 1.937899 ACAAACGCCACAAGTCAGTAC 59.062 47.619 0.00 0.00 0.00 2.73
1887 8255 2.319136 ACAAACGCCACAAGTCAGTA 57.681 45.000 0.00 0.00 0.00 2.74
1888 8256 1.459450 AACAAACGCCACAAGTCAGT 58.541 45.000 0.00 0.00 0.00 3.41
1889 8257 2.598907 CGTAACAAACGCCACAAGTCAG 60.599 50.000 0.00 0.00 46.10 3.51
1890 8258 1.328069 CGTAACAAACGCCACAAGTCA 59.672 47.619 0.00 0.00 46.10 3.41
1891 8259 2.013286 CGTAACAAACGCCACAAGTC 57.987 50.000 0.00 0.00 46.10 3.01
1940 8308 3.369471 GCCATAGTTGTGCAGAACCTAGA 60.369 47.826 21.97 6.87 0.00 2.43
1968 8360 3.442273 GCCGAAGATAGAGGTGGATCTAG 59.558 52.174 0.00 0.00 35.32 2.43
1994 8386 1.609072 GTGCAGAACAAAGAGGGGAAC 59.391 52.381 0.00 0.00 0.00 3.62
2098 8490 6.154706 TCCTACCAATTCTAGAACTGTCCTTC 59.845 42.308 12.58 0.00 0.00 3.46
2167 8559 8.385858 GGGTAAGTAACTAAAGTAAGCAATTCG 58.614 37.037 0.00 0.00 0.00 3.34
2214 8606 1.488812 ACGCCAGGCATAATCTAACCA 59.511 47.619 13.30 0.00 0.00 3.67
2220 8612 2.175878 AGATCACGCCAGGCATAATC 57.824 50.000 13.30 10.28 0.00 1.75
2322 8715 8.034804 AGAATATCCATTAACCAACAGCAAAAC 58.965 33.333 0.00 0.00 0.00 2.43
2415 8808 9.588096 AATAAACATGAAGGTTCCTCTTTTAGT 57.412 29.630 0.00 0.00 0.00 2.24
2435 8828 6.928492 TCAAATCCTTTTGCACCTCAATAAAC 59.072 34.615 0.00 0.00 41.66 2.01
2468 8861 0.984230 TAGCAGAACACAAGGGGGAG 59.016 55.000 0.00 0.00 0.00 4.30
2490 8883 2.303022 GTGTGGAACCTTGAGAGGATCA 59.697 50.000 0.00 0.00 46.74 2.92
2569 8968 8.746530 TCGACTGACTAATACTACCAATTCTTT 58.253 33.333 0.00 0.00 0.00 2.52
2570 8969 8.289939 TCGACTGACTAATACTACCAATTCTT 57.710 34.615 0.00 0.00 0.00 2.52
2582 8981 6.014840 AGGAAACAAGGTTCGACTGACTAATA 60.015 38.462 0.00 0.00 0.00 0.98
2594 8993 2.218603 TCAGCGAAGGAAACAAGGTTC 58.781 47.619 0.00 0.00 0.00 3.62
2602 9001 1.665679 GCGATTCATCAGCGAAGGAAA 59.334 47.619 0.00 0.00 0.00 3.13
2683 9086 0.673985 CAGGATCATTGCCAGGCATG 59.326 55.000 17.09 15.47 38.76 4.06
2839 9242 2.545526 ACAAATGTTCAGCTGTCAGACG 59.454 45.455 14.67 8.89 0.00 4.18
2908 9313 0.031994 ATTTTGCGCCTCACCACAAC 59.968 50.000 4.18 0.00 0.00 3.32
2936 9341 7.633789 ACCAAGAGATAACATGTAGGAACAAT 58.366 34.615 0.00 0.00 39.58 2.71
2965 9370 4.565652 CCAGCCCAATTACAGTACTCAAGT 60.566 45.833 0.00 0.00 0.00 3.16
2983 9388 0.614697 AACCCAATAACAGCCCAGCC 60.615 55.000 0.00 0.00 0.00 4.85
3022 9427 8.283291 GGTACAATATCACTATAAACTGCAAGC 58.717 37.037 0.00 0.00 37.60 4.01
3103 9508 9.255304 GCACCTTCTGTAAATGAACAAATAAAA 57.745 29.630 0.00 0.00 0.00 1.52
3220 9625 4.462132 CACCACACCATTGAATGTCCATTA 59.538 41.667 4.27 0.00 0.00 1.90
3239 9644 0.901124 AAAAAGGCAGTGCAACACCA 59.099 45.000 18.61 0.00 41.43 4.17
3249 9654 4.858935 TGATGAGAAAACGAAAAAGGCAG 58.141 39.130 0.00 0.00 0.00 4.85
3466 10034 1.421268 ACTGCATGAACTGGAGGACAA 59.579 47.619 0.00 0.00 46.90 3.18
3521 10089 7.405292 TCACCAGAAATCAGGAAGATGTAAAT 58.595 34.615 0.00 0.00 36.96 1.40
3589 10172 3.165498 GCGGTTAGCTGTGTTCCG 58.835 61.111 0.00 4.53 44.04 4.30
3647 10230 3.814283 GCTTGCAGATTTCTCCATCCTAG 59.186 47.826 0.00 0.00 0.00 3.02
3648 10231 3.457380 AGCTTGCAGATTTCTCCATCCTA 59.543 43.478 0.00 0.00 0.00 2.94
3649 10232 2.241685 AGCTTGCAGATTTCTCCATCCT 59.758 45.455 0.00 0.00 0.00 3.24
3650 10233 2.358267 CAGCTTGCAGATTTCTCCATCC 59.642 50.000 0.00 0.00 0.00 3.51
3651 10234 3.276857 TCAGCTTGCAGATTTCTCCATC 58.723 45.455 0.00 0.00 0.00 3.51
3652 10235 3.361281 TCAGCTTGCAGATTTCTCCAT 57.639 42.857 0.00 0.00 0.00 3.41
3653 10236 2.865119 TCAGCTTGCAGATTTCTCCA 57.135 45.000 0.00 0.00 0.00 3.86
3729 10323 9.944376 TCAAACTATTCAAAGATAGCTTACACT 57.056 29.630 0.00 0.00 33.77 3.55
3780 10374 4.559704 GCCCTAGCTCACACTATCATGTAC 60.560 50.000 0.00 0.00 35.50 2.90
3785 10379 1.757118 GTGCCCTAGCTCACACTATCA 59.243 52.381 0.00 0.00 40.80 2.15
3794 10388 4.625800 CAAGGTGTGCCCTAGCTC 57.374 61.111 0.00 0.00 45.47 4.09
3816 10410 5.689514 CACGCTCATTTTGACCAAATAAACA 59.310 36.000 0.00 0.00 32.90 2.83
3864 10458 4.511786 ATCTCTCACAGCCTACACTCTA 57.488 45.455 0.00 0.00 0.00 2.43
3918 10518 5.934625 ACAAACAAAACAATTGGTGCTGTAA 59.065 32.000 10.83 0.00 0.00 2.41
4016 10617 3.457749 GGAAATGGAGAAGAGGAGGTGAT 59.542 47.826 0.00 0.00 0.00 3.06
4028 10629 3.114606 TGCAGACATAGGGAAATGGAGA 58.885 45.455 0.00 0.00 0.00 3.71
4029 10630 3.209410 GTGCAGACATAGGGAAATGGAG 58.791 50.000 0.00 0.00 0.00 3.86
4037 10638 3.264897 GCGCGTGCAGACATAGGG 61.265 66.667 17.66 0.00 42.15 3.53
4040 10735 2.813474 GTGGCGCGTGCAGACATA 60.813 61.111 24.18 0.00 45.35 2.29
4046 10741 4.908687 AGTTGAGTGGCGCGTGCA 62.909 61.111 24.18 6.12 45.35 4.57
4049 10744 4.280494 ACGAGTTGAGTGGCGCGT 62.280 61.111 8.43 0.00 36.40 6.01
4195 10909 0.107897 TGCTCACAACAACACCGTCT 60.108 50.000 0.00 0.00 0.00 4.18
4220 10960 1.598130 GGCCTTTGCAGTGACGAGT 60.598 57.895 0.00 0.00 40.13 4.18
4227 10967 2.914097 GCCACTGGCCTTTGCAGT 60.914 61.111 9.13 0.00 44.06 4.40
4260 11000 1.416813 CGAGCTCAATGCACCGACTC 61.417 60.000 15.40 0.00 45.94 3.36
4312 11052 4.394078 CCGCGAGTCACCGAACGA 62.394 66.667 8.23 0.00 0.00 3.85
4349 11089 1.129624 GTCGTTTGACACACAACAGCA 59.870 47.619 0.00 0.00 44.82 4.41
4365 11105 0.944311 GCTCGTCACACCATTGTCGT 60.944 55.000 0.00 0.00 31.66 4.34
4370 11110 2.029288 CGCAGCTCGTCACACCATT 61.029 57.895 0.00 0.00 0.00 3.16
4397 11137 1.217244 GATCGTACCACCAGCCGTT 59.783 57.895 0.00 0.00 0.00 4.44
4432 11172 2.124942 TTGCAGCACGGACACACA 60.125 55.556 0.00 0.00 0.00 3.72
4440 11180 3.414700 GTCTCCGGTTGCAGCACG 61.415 66.667 0.00 3.71 0.00 5.34
4513 11282 2.158667 ACAATATACAAAGGAGGCCCGG 60.159 50.000 0.00 0.00 37.58 5.73
4520 11289 6.677781 GCAGTTGCTACAATATACAAAGGA 57.322 37.500 0.13 0.00 38.21 3.36
4536 11305 4.564940 AGTATAGTACCGTAGCAGTTGC 57.435 45.455 0.00 0.00 42.49 4.17
4553 11322 9.309224 GCCCAAATCCCTTGTTTATTATAGTAT 57.691 33.333 0.00 0.00 32.65 2.12
4554 11323 7.726738 GGCCCAAATCCCTTGTTTATTATAGTA 59.273 37.037 0.00 0.00 32.65 1.82
4555 11324 6.553476 GGCCCAAATCCCTTGTTTATTATAGT 59.447 38.462 0.00 0.00 32.65 2.12
4556 11325 6.782494 AGGCCCAAATCCCTTGTTTATTATAG 59.218 38.462 0.00 0.00 32.65 1.31
4557 11326 6.688554 AGGCCCAAATCCCTTGTTTATTATA 58.311 36.000 0.00 0.00 32.65 0.98
4558 11327 5.537914 AGGCCCAAATCCCTTGTTTATTAT 58.462 37.500 0.00 0.00 32.65 1.28
4559 11328 4.954089 AGGCCCAAATCCCTTGTTTATTA 58.046 39.130 0.00 0.00 32.65 0.98
4560 11329 3.774766 GAGGCCCAAATCCCTTGTTTATT 59.225 43.478 0.00 0.00 32.65 1.40
4561 11330 3.245948 TGAGGCCCAAATCCCTTGTTTAT 60.246 43.478 0.00 0.00 32.65 1.40
4562 11331 2.110899 TGAGGCCCAAATCCCTTGTTTA 59.889 45.455 0.00 0.00 32.65 2.01
4563 11332 1.132881 TGAGGCCCAAATCCCTTGTTT 60.133 47.619 0.00 0.00 32.65 2.83
4564 11333 0.486879 TGAGGCCCAAATCCCTTGTT 59.513 50.000 0.00 0.00 32.65 2.83
4565 11334 0.712380 ATGAGGCCCAAATCCCTTGT 59.288 50.000 0.00 0.00 32.65 3.16
4566 11335 1.117150 CATGAGGCCCAAATCCCTTG 58.883 55.000 0.00 0.00 34.52 3.61
4567 11336 1.009997 TCATGAGGCCCAAATCCCTT 58.990 50.000 0.00 0.00 0.00 3.95
4568 11337 0.259938 GTCATGAGGCCCAAATCCCT 59.740 55.000 0.00 0.00 0.00 4.20
4569 11338 0.259938 AGTCATGAGGCCCAAATCCC 59.740 55.000 0.00 0.00 0.00 3.85
4570 11339 1.213926 AGAGTCATGAGGCCCAAATCC 59.786 52.381 0.00 0.00 0.00 3.01
4572 11341 3.463048 AAAGAGTCATGAGGCCCAAAT 57.537 42.857 0.00 0.00 0.00 2.32
4573 11342 2.978156 AAAGAGTCATGAGGCCCAAA 57.022 45.000 0.00 0.00 0.00 3.28
4574 11343 2.978156 AAAAGAGTCATGAGGCCCAA 57.022 45.000 0.00 0.00 0.00 4.12
4575 11344 2.555227 GGAAAAAGAGTCATGAGGCCCA 60.555 50.000 0.00 0.00 0.00 5.36
4576 11345 2.095461 GGAAAAAGAGTCATGAGGCCC 58.905 52.381 0.00 0.00 0.00 5.80
4577 11346 3.078891 AGGAAAAAGAGTCATGAGGCC 57.921 47.619 0.00 0.00 0.00 5.19
4578 11347 6.765915 AAATAGGAAAAAGAGTCATGAGGC 57.234 37.500 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.