Multiple sequence alignment - TraesCS5A01G081800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G081800 chr5A 100.000 7719 0 0 1 7719 105696953 105689235 0.000000e+00 14255.0
1 TraesCS5A01G081800 chr5A 78.626 131 28 0 4614 4744 379342172 379342302 3.840000e-13 87.9
2 TraesCS5A01G081800 chr5A 89.394 66 6 1 4614 4678 529909549 529909614 1.790000e-11 82.4
3 TraesCS5A01G081800 chr5B 94.051 3866 138 28 782 4615 107190328 107194133 0.000000e+00 5781.0
4 TraesCS5A01G081800 chr5B 96.494 1483 48 4 4971 6451 107194132 107195612 0.000000e+00 2447.0
5 TraesCS5A01G081800 chr5B 94.872 1170 35 10 6573 7719 107195792 107196959 0.000000e+00 1805.0
6 TraesCS5A01G081800 chr5B 92.500 240 17 1 4733 4972 527330540 527330302 7.420000e-90 342.0
7 TraesCS5A01G081800 chr5B 94.400 125 7 0 4614 4738 527332151 527332027 7.900000e-45 193.0
8 TraesCS5A01G081800 chr5B 93.578 109 7 0 6454 6562 220033213 220033105 6.200000e-36 163.0
9 TraesCS5A01G081800 chr5D 95.210 2923 95 14 1725 4615 97826724 97829633 0.000000e+00 4580.0
10 TraesCS5A01G081800 chr5D 96.737 1471 46 2 4971 6441 97829632 97831100 0.000000e+00 2449.0
11 TraesCS5A01G081800 chr5D 94.293 806 25 10 897 1694 97825934 97826726 0.000000e+00 1214.0
12 TraesCS5A01G081800 chr5D 90.698 774 20 24 6979 7718 97831839 97832594 0.000000e+00 983.0
13 TraesCS5A01G081800 chr5D 95.730 445 14 3 6573 7015 97831287 97831728 0.000000e+00 712.0
14 TraesCS5A01G081800 chr5D 96.479 142 4 1 776 917 97820616 97820756 4.660000e-57 233.0
15 TraesCS5A01G081800 chr5D 71.947 524 138 7 261 779 5258226 5258745 2.250000e-30 145.0
16 TraesCS5A01G081800 chr3D 90.310 774 73 2 6 778 85355069 85354297 0.000000e+00 1013.0
17 TraesCS5A01G081800 chr4D 89.046 776 85 0 3 778 435965765 435966540 0.000000e+00 963.0
18 TraesCS5A01G081800 chr4D 90.265 113 11 0 6451 6563 259497256 259497368 1.740000e-31 148.0
19 TraesCS5A01G081800 chr1B 85.714 770 99 3 3 772 621619915 621620673 0.000000e+00 802.0
20 TraesCS5A01G081800 chr1B 91.447 152 13 0 621 772 99719525 99719374 7.850000e-50 209.0
21 TraesCS5A01G081800 chr6B 96.748 369 11 1 4605 4972 132343754 132343386 1.420000e-171 614.0
22 TraesCS5A01G081800 chr2D 95.822 359 15 0 4614 4972 71644067 71643709 1.440000e-161 580.0
23 TraesCS5A01G081800 chr2B 95.000 360 15 2 4613 4972 568818276 568818632 5.230000e-156 562.0
24 TraesCS5A01G081800 chr2B 89.231 65 7 0 4614 4678 575462004 575461940 1.790000e-11 82.4
25 TraesCS5A01G081800 chr7D 84.890 364 11 7 4614 4972 1201332 1201008 2.080000e-85 327.0
26 TraesCS5A01G081800 chr7D 73.223 422 103 8 258 674 501080685 501080269 2.250000e-30 145.0
27 TraesCS5A01G081800 chr4A 95.283 106 5 0 6454 6559 699002642 699002747 1.330000e-37 169.0
28 TraesCS5A01G081800 chr3B 95.283 106 5 0 6454 6559 33114165 33114060 1.330000e-37 169.0
29 TraesCS5A01G081800 chr7A 94.175 103 6 0 6457 6559 664675827 664675725 2.880000e-34 158.0
30 TraesCS5A01G081800 chr7A 80.292 137 23 2 4612 4744 475551033 475550897 4.930000e-17 100.0
31 TraesCS5A01G081800 chr7A 87.692 65 8 0 4614 4678 657688380 657688316 8.310000e-10 76.8
32 TraesCS5A01G081800 chr7B 91.892 111 9 0 6453 6563 535637050 535637160 1.040000e-33 156.0
33 TraesCS5A01G081800 chr7B 80.000 130 26 0 650 779 23728245 23728116 6.380000e-16 97.1
34 TraesCS5A01G081800 chr7B 80.952 84 16 0 259 342 677853051 677853134 5.000000e-07 67.6
35 TraesCS5A01G081800 chr6D 91.509 106 9 0 6454 6559 302113750 302113645 6.240000e-31 147.0
36 TraesCS5A01G081800 chr4B 91.509 106 9 0 6454 6559 362839858 362839963 6.240000e-31 147.0
37 TraesCS5A01G081800 chr4B 89.381 113 12 0 6451 6563 255388283 255388171 8.070000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G081800 chr5A 105689235 105696953 7718 True 14255.000000 14255 100.0000 1 7719 1 chr5A.!!$R1 7718
1 TraesCS5A01G081800 chr5B 107190328 107196959 6631 False 3344.333333 5781 95.1390 782 7719 3 chr5B.!!$F1 6937
2 TraesCS5A01G081800 chr5B 527330302 527332151 1849 True 267.500000 342 93.4500 4614 4972 2 chr5B.!!$R2 358
3 TraesCS5A01G081800 chr5D 97825934 97832594 6660 False 1987.600000 4580 94.5336 897 7718 5 chr5D.!!$F3 6821
4 TraesCS5A01G081800 chr3D 85354297 85355069 772 True 1013.000000 1013 90.3100 6 778 1 chr3D.!!$R1 772
5 TraesCS5A01G081800 chr4D 435965765 435966540 775 False 963.000000 963 89.0460 3 778 1 chr4D.!!$F2 775
6 TraesCS5A01G081800 chr1B 621619915 621620673 758 False 802.000000 802 85.7140 3 772 1 chr1B.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 706 0.179067 TGTGTTTCGGCGAGGTCTTT 60.179 50.0 10.46 0.00 0.00 2.52 F
1291 1295 0.184451 CAGCCTTGGATGCCATAGGT 59.816 55.0 12.83 1.17 35.63 3.08 F
1335 1342 0.251474 TCGTAGGTGCTACAGGTGGT 60.251 55.0 0.00 0.00 36.83 4.16 F
2832 2853 0.331278 TGGATGGGTTGATTTCGGCT 59.669 50.0 0.00 0.00 0.00 5.52 F
3671 3701 0.389817 TCTGCGGAGGTGATTTGACG 60.390 55.0 3.37 0.00 0.00 4.35 F
4830 6374 0.169009 GGACAGCCAATCAAAGCGTC 59.831 55.0 0.00 0.00 34.22 5.19 F
6089 7634 0.630673 ATGTGTACCCATGTGCCCAT 59.369 50.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 2174 1.202989 TCACAATTACCTGCCTGCCAA 60.203 47.619 0.00 0.00 0.00 4.52 R
2597 2606 1.973812 GCTCCTGCCTCCAAACCAC 60.974 63.158 0.00 0.00 0.00 4.16 R
3296 3325 1.728323 TCAGATCACCCTGTCCACAA 58.272 50.000 0.00 0.00 35.71 3.33 R
4787 6331 0.461548 TTGACTCCTCATAGCGCAGG 59.538 55.000 11.47 7.84 0.00 4.85 R
4949 6493 0.986527 TCCCTCCGGTCCTTTTTACC 59.013 55.000 0.00 0.00 0.00 2.85 R
6519 8065 0.179100 CTTGTCGCTCATCCGGATGT 60.179 55.000 36.95 8.18 39.72 3.06 R
7135 8898 0.953960 GTTGGTTTCGCCTCGTGGAT 60.954 55.000 7.92 0.00 38.35 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.745115 CCCTTGGATCTCGCGCAAA 60.745 57.895 8.75 0.00 0.00 3.68
118 119 1.454847 AAAGTGGCTGCGTTCCCAA 60.455 52.632 0.00 0.00 31.90 4.12
120 121 1.244019 AAGTGGCTGCGTTCCCAATC 61.244 55.000 0.00 0.00 31.90 2.67
139 140 1.456518 TCCCAGATCGCCAGAGAGG 60.457 63.158 0.00 0.00 41.84 3.69
153 154 3.209410 CAGAGAGGTTCTGCAGTTTTGT 58.791 45.455 14.67 0.00 46.30 2.83
154 155 4.380531 CAGAGAGGTTCTGCAGTTTTGTA 58.619 43.478 14.67 0.00 46.30 2.41
156 157 5.471456 CAGAGAGGTTCTGCAGTTTTGTATT 59.529 40.000 14.67 0.00 46.30 1.89
202 203 1.410882 CTTCTAGCCCACCTAGCACTC 59.589 57.143 0.00 0.00 42.73 3.51
253 254 5.884322 TCCCAGCATTGCTCATATCTAAAT 58.116 37.500 8.54 0.00 36.40 1.40
255 256 7.636579 TCCCAGCATTGCTCATATCTAAATAT 58.363 34.615 8.54 0.00 36.40 1.28
391 392 1.562942 TCTGAAGTAGCGACCCCTCTA 59.437 52.381 0.00 0.00 0.00 2.43
406 407 4.104102 ACCCCTCTATCTAGTCTCACTCTG 59.896 50.000 0.00 0.00 0.00 3.35
409 410 5.063204 CCTCTATCTAGTCTCACTCTGGTG 58.937 50.000 0.00 0.00 44.23 4.17
439 440 3.933332 CTCCGGCTACTTTCTTTTCGAAT 59.067 43.478 0.00 0.00 0.00 3.34
457 458 0.326264 ATGTCCAGTTGGAGCCTGAC 59.674 55.000 0.00 0.00 46.49 3.51
475 476 4.586421 CCTGACTAGCCAATATCTGACAGA 59.414 45.833 7.80 7.80 0.00 3.41
482 483 3.562973 GCCAATATCTGACAGACCACATG 59.437 47.826 7.47 3.29 0.00 3.21
532 533 1.270826 TGAGCTTGACTTCTCTGACCG 59.729 52.381 0.00 0.00 0.00 4.79
565 566 3.989698 ATGCGCGTGGAGGACTTCG 62.990 63.158 8.43 0.00 0.00 3.79
571 572 1.725164 GCGTGGAGGACTTCGTTAAAG 59.275 52.381 0.00 0.00 41.08 1.85
631 632 0.821301 TGCCACGAAGCATGTTCCAA 60.821 50.000 0.00 0.00 38.00 3.53
670 671 0.399091 CCTGGGCCTCTCCATAGACA 60.399 60.000 4.53 0.00 36.05 3.41
694 695 0.817634 TGGCCCTGAACTGTGTTTCG 60.818 55.000 0.00 0.00 0.00 3.46
697 698 1.569493 CCTGAACTGTGTTTCGGCG 59.431 57.895 0.00 0.00 31.38 6.46
705 706 0.179067 TGTGTTTCGGCGAGGTCTTT 60.179 50.000 10.46 0.00 0.00 2.52
745 746 7.663827 TGTGATATTCCGAATAACCGATAACT 58.336 34.615 4.94 0.00 0.00 2.24
821 822 2.911819 ACCGAACACACACTTTGTTG 57.088 45.000 0.00 0.00 37.31 3.33
824 825 1.797348 CGAACACACACTTTGTTGGGC 60.797 52.381 0.00 0.00 37.31 5.36
895 896 1.551145 GTCGCCGTCTTCTCTCAATC 58.449 55.000 0.00 0.00 0.00 2.67
901 902 4.667668 CGCCGTCTTCTCTCAATCAAAAAG 60.668 45.833 0.00 0.00 0.00 2.27
902 903 4.452455 GCCGTCTTCTCTCAATCAAAAAGA 59.548 41.667 0.00 0.00 0.00 2.52
1118 1122 2.344950 CGACGAGGTACTGTCACTAGT 58.655 52.381 11.88 0.00 41.55 2.57
1207 1211 0.608130 TCGAGCCAAGCTGTACATGT 59.392 50.000 2.69 2.69 39.88 3.21
1213 1217 1.466167 CCAAGCTGTACATGTGAGTGC 59.534 52.381 9.11 7.66 0.00 4.40
1291 1295 0.184451 CAGCCTTGGATGCCATAGGT 59.816 55.000 12.83 1.17 35.63 3.08
1335 1342 0.251474 TCGTAGGTGCTACAGGTGGT 60.251 55.000 0.00 0.00 36.83 4.16
1348 1355 1.073199 GGTGGTGGTTCCCTCACTG 59.927 63.158 9.94 0.00 35.61 3.66
1384 1392 2.045561 TGGAGTTTTGGTCGCTTTGA 57.954 45.000 0.00 0.00 0.00 2.69
1442 1450 2.099263 CGTAGATTGTGACGGTGGAGAT 59.901 50.000 0.00 0.00 35.43 2.75
1443 1451 3.314357 CGTAGATTGTGACGGTGGAGATA 59.686 47.826 0.00 0.00 35.43 1.98
1444 1452 4.201980 CGTAGATTGTGACGGTGGAGATAA 60.202 45.833 0.00 0.00 35.43 1.75
1575 1583 9.326413 GTGTTCTAGTGTATAATGGTAATGCTT 57.674 33.333 0.00 0.00 0.00 3.91
1617 1626 9.378551 ACAGTATTGTTTTCCTTTTTCTTTTCC 57.621 29.630 0.00 0.00 32.28 3.13
1673 1682 5.887214 ATGCTGTTGTATACTGGGACATA 57.113 39.130 4.17 0.00 38.20 2.29
1694 1703 8.348285 ACATACACATTTTTGGTAGTGCTTAT 57.652 30.769 0.00 0.00 35.47 1.73
1698 1707 8.172352 ACACATTTTTGGTAGTGCTTATAACA 57.828 30.769 0.00 0.00 35.47 2.41
1699 1708 8.634444 ACACATTTTTGGTAGTGCTTATAACAA 58.366 29.630 0.00 0.00 35.47 2.83
1700 1709 9.128107 CACATTTTTGGTAGTGCTTATAACAAG 57.872 33.333 0.00 0.00 0.00 3.16
1701 1710 8.856103 ACATTTTTGGTAGTGCTTATAACAAGT 58.144 29.630 0.00 0.00 0.00 3.16
1702 1711 9.691362 CATTTTTGGTAGTGCTTATAACAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
1703 1712 9.908152 ATTTTTGGTAGTGCTTATAACAAGTTC 57.092 29.630 0.00 0.00 0.00 3.01
1704 1713 7.443259 TTTGGTAGTGCTTATAACAAGTTCC 57.557 36.000 0.00 0.00 0.00 3.62
1705 1714 6.116711 TGGTAGTGCTTATAACAAGTTCCA 57.883 37.500 0.00 0.00 0.00 3.53
1706 1715 5.935789 TGGTAGTGCTTATAACAAGTTCCAC 59.064 40.000 0.00 0.00 0.00 4.02
1707 1716 5.353400 GGTAGTGCTTATAACAAGTTCCACC 59.647 44.000 0.00 0.00 0.00 4.61
1708 1717 4.980573 AGTGCTTATAACAAGTTCCACCA 58.019 39.130 0.00 0.00 0.00 4.17
1709 1718 5.570320 AGTGCTTATAACAAGTTCCACCAT 58.430 37.500 0.00 0.00 0.00 3.55
1710 1719 6.717289 AGTGCTTATAACAAGTTCCACCATA 58.283 36.000 0.00 0.00 0.00 2.74
1711 1720 7.346471 AGTGCTTATAACAAGTTCCACCATAT 58.654 34.615 0.00 0.00 0.00 1.78
1712 1721 7.834181 AGTGCTTATAACAAGTTCCACCATATT 59.166 33.333 0.00 0.00 0.00 1.28
1713 1722 8.129211 GTGCTTATAACAAGTTCCACCATATTC 58.871 37.037 0.00 0.00 0.00 1.75
1714 1723 7.831690 TGCTTATAACAAGTTCCACCATATTCA 59.168 33.333 0.00 0.00 0.00 2.57
1715 1724 8.345565 GCTTATAACAAGTTCCACCATATTCAG 58.654 37.037 0.00 0.00 0.00 3.02
1716 1725 9.396022 CTTATAACAAGTTCCACCATATTCAGT 57.604 33.333 0.00 0.00 0.00 3.41
1717 1726 9.747898 TTATAACAAGTTCCACCATATTCAGTT 57.252 29.630 0.00 0.00 0.00 3.16
1719 1728 7.448748 AACAAGTTCCACCATATTCAGTTAC 57.551 36.000 0.00 0.00 0.00 2.50
1720 1729 6.539173 ACAAGTTCCACCATATTCAGTTACA 58.461 36.000 0.00 0.00 0.00 2.41
1721 1730 7.175104 ACAAGTTCCACCATATTCAGTTACAT 58.825 34.615 0.00 0.00 0.00 2.29
1762 1771 9.696917 GTTTCTTAAATGGTTTGTTGATCAGAT 57.303 29.630 0.00 0.00 0.00 2.90
1798 1807 3.080300 ACCGTAATCCCTTTTGCATGA 57.920 42.857 0.00 0.00 0.00 3.07
1800 1809 4.023291 ACCGTAATCCCTTTTGCATGATT 58.977 39.130 0.00 0.00 0.00 2.57
1841 1850 4.940046 AGTACACAGGAAATGCTTCTGATG 59.060 41.667 0.00 0.00 0.00 3.07
1842 1851 3.087031 ACACAGGAAATGCTTCTGATGG 58.913 45.455 0.00 0.00 0.00 3.51
1871 1880 8.603181 CAGTTAAAATCACACATCGATGTATCA 58.397 33.333 29.52 16.34 39.39 2.15
1917 1926 8.030913 TCCTTTAATCCAAGTATCTAAGGACC 57.969 38.462 0.00 0.00 36.05 4.46
1918 1927 7.849904 TCCTTTAATCCAAGTATCTAAGGACCT 59.150 37.037 0.00 0.00 36.05 3.85
1923 1932 5.590818 TCCAAGTATCTAAGGACCTGAGTT 58.409 41.667 5.71 0.10 0.00 3.01
1928 1937 9.968870 CAAGTATCTAAGGACCTGAGTTATTAC 57.031 37.037 5.71 4.81 0.00 1.89
1937 1946 6.379133 AGGACCTGAGTTATTACGTTACATGA 59.621 38.462 0.00 0.00 0.00 3.07
1955 1964 6.882610 ACATGAAAATTCACACTGCTCTTA 57.117 33.333 0.00 0.00 40.49 2.10
2165 2174 5.605540 AAGGACCATGGGCTTTGATATAT 57.394 39.130 19.55 0.00 0.00 0.86
2238 2247 5.639506 ACTCTGTTTCCTAACATCAATGTCG 59.360 40.000 0.00 0.00 43.02 4.35
2404 2413 4.640789 ACTCTGGTAAGATAAGCGTGAG 57.359 45.455 0.00 0.00 0.00 3.51
2407 2416 4.744570 TCTGGTAAGATAAGCGTGAGTTG 58.255 43.478 0.00 0.00 0.00 3.16
2569 2578 8.256605 GTGCATGTCCATTCTCATATATACTCT 58.743 37.037 0.00 0.00 0.00 3.24
2590 2599 2.642427 TCTTCACTCTTGCAGCAACAA 58.358 42.857 2.83 0.00 0.00 2.83
2597 2606 4.736793 CACTCTTGCAGCAACAAAAGTAAG 59.263 41.667 2.83 0.00 29.14 2.34
2637 2646 3.503748 CAGACCCTGATTTTTCTGACCAC 59.496 47.826 0.00 0.00 38.19 4.16
2647 2656 5.476091 TTTTTCTGACCACACCAAAGTTT 57.524 34.783 0.00 0.00 0.00 2.66
2775 2790 3.187700 GACGGATTCTTCGTTGCATACT 58.812 45.455 0.00 0.00 41.22 2.12
2799 2814 7.438459 ACTTTAATACGATGGGAGAGAAAATCG 59.562 37.037 2.61 2.61 45.60 3.34
2820 2841 2.698855 CAGTTCCTACTGTGGATGGG 57.301 55.000 0.00 0.00 45.46 4.00
2832 2853 0.331278 TGGATGGGTTGATTTCGGCT 59.669 50.000 0.00 0.00 0.00 5.52
2841 2862 1.948104 TGATTTCGGCTATGGGTTCG 58.052 50.000 0.00 0.00 0.00 3.95
2880 2901 2.159352 TCACTTGTCGTCGTGTTTCAGA 60.159 45.455 0.00 0.00 33.07 3.27
2881 2902 2.601314 CACTTGTCGTCGTGTTTCAGAA 59.399 45.455 0.00 0.00 0.00 3.02
2882 2903 3.061563 CACTTGTCGTCGTGTTTCAGAAA 59.938 43.478 0.00 0.00 0.00 2.52
2883 2904 3.061697 ACTTGTCGTCGTGTTTCAGAAAC 59.938 43.478 17.85 17.85 41.73 2.78
2884 2905 2.883574 TGTCGTCGTGTTTCAGAAACT 58.116 42.857 23.57 0.00 41.90 2.66
2885 2906 2.855963 TGTCGTCGTGTTTCAGAAACTC 59.144 45.455 23.57 19.36 41.90 3.01
2886 2907 3.114065 GTCGTCGTGTTTCAGAAACTCT 58.886 45.455 23.57 0.00 41.90 3.24
2887 2908 4.201940 TGTCGTCGTGTTTCAGAAACTCTA 60.202 41.667 23.57 11.78 41.90 2.43
2888 2909 4.379204 GTCGTCGTGTTTCAGAAACTCTAG 59.621 45.833 23.57 14.38 41.90 2.43
3007 3028 8.514330 TGTTTGCTAAAAATTACCCGAGATAT 57.486 30.769 0.00 0.00 0.00 1.63
3233 3262 5.458041 TCTTTCTTGGAAGGAAAATGCTG 57.542 39.130 0.00 0.00 33.17 4.41
3296 3325 3.477530 GCCAACTTTACAGAGTCCTTGT 58.522 45.455 0.00 0.00 0.00 3.16
3324 3353 4.759782 ACAGGGTGATCTGAATAAACTCG 58.240 43.478 0.00 0.00 38.11 4.18
3369 3398 1.821136 CAATCCTTTTCTCTGGTGGCC 59.179 52.381 0.00 0.00 0.00 5.36
3387 3416 2.224402 GGCCTGGACTCCATGATACTTC 60.224 54.545 4.60 0.00 30.82 3.01
3396 3425 6.445451 ACTCCATGATACTTCCAGCATTAT 57.555 37.500 0.00 0.00 0.00 1.28
3438 3467 6.734137 TCCAAATGTATGTTCAAGTGTGTTC 58.266 36.000 0.00 0.00 0.00 3.18
3499 3528 4.963318 ATAGCATGGAAGTTAGCTGCTA 57.037 40.909 5.02 5.02 46.15 3.49
3532 3561 5.221742 ACCACAAACTTTGGTTTTTGAGGAA 60.222 36.000 14.80 0.00 45.62 3.36
3534 3563 6.128309 CCACAAACTTTGGTTTTTGAGGAAAG 60.128 38.462 6.47 0.00 42.71 2.62
3671 3701 0.389817 TCTGCGGAGGTGATTTGACG 60.390 55.000 3.37 0.00 0.00 4.35
3681 3711 3.564225 AGGTGATTTGACGTGAACTTTCC 59.436 43.478 0.00 0.00 0.00 3.13
3738 3768 8.959548 TGCTGAACATAGATGATTTTGTATTGT 58.040 29.630 0.00 0.00 0.00 2.71
3775 3805 8.993121 CACATATCAAAAGACAGACAGTACTTT 58.007 33.333 0.00 0.00 32.60 2.66
3827 3858 2.035066 ACTCAAATTCTGGCACTTGTGC 59.965 45.455 16.50 16.50 0.00 4.57
3867 3898 7.379059 TCCTCATACATGATGAACCTTATGT 57.621 36.000 0.00 0.00 44.14 2.29
3977 4008 3.746045 TGTGCTTTCTTAGTTCCTCGT 57.254 42.857 0.00 0.00 0.00 4.18
4045 4076 7.417911 GGAGTGATTGATACTGTATCCTTGTGA 60.418 40.741 21.63 2.83 34.26 3.58
4145 4178 4.219115 TGGTCTGGCCATGTAAAAAGAAA 58.781 39.130 5.51 0.00 43.61 2.52
4146 4179 4.837860 TGGTCTGGCCATGTAAAAAGAAAT 59.162 37.500 5.51 0.00 43.61 2.17
4149 4182 6.147656 GGTCTGGCCATGTAAAAAGAAATTTG 59.852 38.462 5.51 0.00 37.17 2.32
4306 4339 8.084985 TGTCACTGATATACCCTTCAAATACA 57.915 34.615 0.00 0.00 0.00 2.29
4320 4353 9.739276 CCCTTCAAATACATATATGGTGTGTAT 57.261 33.333 16.96 4.14 44.16 2.29
4423 4456 2.039480 AGTCATCCATGCAGTGTCACTT 59.961 45.455 1.67 0.00 0.00 3.16
4461 4494 3.940852 GGATTTGGATTTTGGAATGGTGC 59.059 43.478 0.00 0.00 0.00 5.01
4483 4516 4.966366 GCTGTAAACTTCGAATCATGCATC 59.034 41.667 0.00 0.00 0.00 3.91
4484 4517 5.220739 GCTGTAAACTTCGAATCATGCATCT 60.221 40.000 0.00 0.00 0.00 2.90
4485 4518 6.676456 GCTGTAAACTTCGAATCATGCATCTT 60.676 38.462 0.00 0.00 0.00 2.40
4486 4519 7.144722 TGTAAACTTCGAATCATGCATCTTT 57.855 32.000 0.00 0.00 0.00 2.52
4514 4559 8.755696 TTTCTTTGCATATGACAATACCAAAC 57.244 30.769 6.97 0.00 0.00 2.93
4525 4576 3.739300 ACAATACCAAACGTCAAGACTCG 59.261 43.478 0.00 0.00 0.00 4.18
4557 4608 5.885449 TTTCTTTTGGGATCACATTTGGT 57.115 34.783 0.00 0.00 0.00 3.67
4599 4651 9.482175 AGAGTTTAGTCTGGTCTAATTGACTAT 57.518 33.333 0.00 0.00 44.74 2.12
4637 4689 1.411787 CCCTCCGGTCCTCAATAGTCT 60.412 57.143 0.00 0.00 0.00 3.24
4647 4699 6.456501 GGTCCTCAATAGTCTGCGTATAAAT 58.543 40.000 0.00 0.00 0.00 1.40
4689 4741 0.801067 GTCTGCGTACTAAGCCACCG 60.801 60.000 0.00 0.00 0.00 4.94
4706 4758 1.134670 ACCGCAGCTAGTCTTTCCATC 60.135 52.381 0.00 0.00 0.00 3.51
4709 4761 2.484417 CGCAGCTAGTCTTTCCATCCAT 60.484 50.000 0.00 0.00 0.00 3.41
4728 4780 2.054453 GCCACTGCCCTTTCCATCC 61.054 63.158 0.00 0.00 0.00 3.51
4738 4790 2.517980 CCCTTTCCATCCCATCCCTTAA 59.482 50.000 0.00 0.00 0.00 1.85
4739 4791 3.142787 CCCTTTCCATCCCATCCCTTAAT 59.857 47.826 0.00 0.00 0.00 1.40
4740 4792 4.389034 CCCTTTCCATCCCATCCCTTAATT 60.389 45.833 0.00 0.00 0.00 1.40
4741 4793 5.162881 CCCTTTCCATCCCATCCCTTAATTA 60.163 44.000 0.00 0.00 0.00 1.40
4742 4794 6.012745 CCTTTCCATCCCATCCCTTAATTAG 58.987 44.000 0.00 0.00 0.00 1.73
4743 4795 4.657814 TCCATCCCATCCCTTAATTAGC 57.342 45.455 0.00 0.00 0.00 3.09
4744 4796 3.986817 TCCATCCCATCCCTTAATTAGCA 59.013 43.478 0.00 0.00 0.00 3.49
4745 4797 4.082125 CCATCCCATCCCTTAATTAGCAC 58.918 47.826 0.00 0.00 0.00 4.40
4747 4799 3.403322 TCCCATCCCTTAATTAGCACCT 58.597 45.455 0.00 0.00 0.00 4.00
4766 6310 3.091545 CCTGTCAGTAACCAATTGGCAT 58.908 45.455 24.79 15.81 39.32 4.40
4827 6371 0.813821 GGAGGACAGCCAATCAAAGC 59.186 55.000 0.00 0.00 36.29 3.51
4830 6374 0.169009 GGACAGCCAATCAAAGCGTC 59.831 55.000 0.00 0.00 34.22 5.19
4848 6392 3.609175 GCGTCTGCAGTTATTTTTCAGCA 60.609 43.478 14.67 0.00 42.15 4.41
4851 6395 3.507233 TCTGCAGTTATTTTTCAGCAGGG 59.493 43.478 14.67 0.00 46.84 4.45
4897 6441 2.883026 TGTGGGGGTAAAATTGTCCAG 58.117 47.619 0.00 0.00 0.00 3.86
4922 6466 2.119655 GCATGGCTGCCTCTCCTTG 61.120 63.158 21.03 8.74 42.88 3.61
4932 6476 1.749033 CTCTCCTTGGTATCCGGGC 59.251 63.158 0.00 0.00 0.00 6.13
4949 6493 1.339711 GGCTTTGTGTTATGCGCAAG 58.660 50.000 17.11 5.49 46.65 4.01
4952 6496 2.095466 GCTTTGTGTTATGCGCAAGGTA 60.095 45.455 17.11 0.00 46.65 3.08
5017 6561 7.018249 AGGAGGAAGTTTAAGGTAGGATTTGAA 59.982 37.037 0.00 0.00 0.00 2.69
5043 6587 4.139038 GGTGTTTGCTTTTAGTCCTGGTA 58.861 43.478 0.00 0.00 0.00 3.25
5057 6601 2.158385 TCCTGGTACCCTGTTTTGCAAT 60.158 45.455 10.07 0.00 0.00 3.56
5225 6769 1.995626 CATCAACTCCCGACCCCCT 60.996 63.158 0.00 0.00 0.00 4.79
5254 6798 4.416516 CCCATCCCTTCTAACCAAGTTTT 58.583 43.478 0.00 0.00 0.00 2.43
5292 6836 7.399245 AAATACCTGGTTATTATGTGCGTTT 57.601 32.000 3.84 0.00 0.00 3.60
5306 6850 2.025155 TGCGTTTGTTATGGTGGTTGT 58.975 42.857 0.00 0.00 0.00 3.32
5358 6902 4.116238 GTGTAAGAGGCTGCAGTAAGATC 58.884 47.826 16.64 6.62 0.00 2.75
5467 7011 1.002468 GTCTTCATGTGTGTGCACCAC 60.002 52.381 23.54 23.54 44.65 4.16
5561 7105 9.736023 GAAAATATGATGGACTGTTGGTAAATC 57.264 33.333 0.00 0.00 0.00 2.17
5640 7184 3.243805 TGCACAGGATTTGAACATTGGTG 60.244 43.478 0.00 0.00 0.00 4.17
5705 7249 2.677836 GCAAGATGGTGATCGCTACAAA 59.322 45.455 6.18 0.00 33.34 2.83
5823 7367 6.207417 AGGGTATGTATGCATTGATTTAGTGC 59.793 38.462 3.54 0.00 41.93 4.40
5831 7375 4.178540 GCATTGATTTAGTGCACTGCATT 58.821 39.130 29.57 11.76 41.91 3.56
6089 7634 0.630673 ATGTGTACCCATGTGCCCAT 59.369 50.000 0.00 0.00 0.00 4.00
6145 7690 6.583806 GTGTGATCAGAACATTGTTGGAAATC 59.416 38.462 6.80 5.53 0.00 2.17
6175 7720 5.541845 TGGGATATCGCTAAACTTGATGAG 58.458 41.667 19.35 0.00 0.00 2.90
6178 7723 2.024176 TCGCTAAACTTGATGAGCCC 57.976 50.000 0.00 0.00 0.00 5.19
6221 7766 5.184711 AGATTCTGAGAGAGGTTTGCATTC 58.815 41.667 0.00 0.00 0.00 2.67
6239 7785 6.894828 TGCATTCCGTTTTTCTTAACTCTAC 58.105 36.000 0.00 0.00 0.00 2.59
6296 7842 2.833338 CCATCCCCTTTTGCTGATTCAA 59.167 45.455 0.00 0.00 0.00 2.69
6307 7853 7.062605 CCTTTTGCTGATTCAATAATGTGACAC 59.937 37.037 0.00 0.00 0.00 3.67
6310 7856 5.706833 TGCTGATTCAATAATGTGACACTGT 59.293 36.000 7.20 0.00 0.00 3.55
6352 7898 3.570125 GGGTCTACAAGAAGCTGCTTTTT 59.430 43.478 17.10 14.31 0.00 1.94
6430 7976 7.246674 AGAATAGTTGTAGTGTTGTGTGTTG 57.753 36.000 0.00 0.00 0.00 3.33
6432 7978 7.715249 AGAATAGTTGTAGTGTTGTGTGTTGAT 59.285 33.333 0.00 0.00 0.00 2.57
6441 7987 7.011828 AGTGTTGTGTGTTGATAAGTTACAC 57.988 36.000 0.00 0.00 41.85 2.90
6458 8004 8.788325 AAGTTACACTATTTGGATTGTACTCC 57.212 34.615 0.00 0.00 35.74 3.85
6459 8005 7.336396 AGTTACACTATTTGGATTGTACTCCC 58.664 38.462 0.00 0.00 34.12 4.30
6460 8006 7.182206 AGTTACACTATTTGGATTGTACTCCCT 59.818 37.037 0.00 0.00 34.12 4.20
6461 8007 5.990668 ACACTATTTGGATTGTACTCCCTC 58.009 41.667 0.00 0.00 34.12 4.30
6462 8008 5.104485 ACACTATTTGGATTGTACTCCCTCC 60.104 44.000 0.00 0.00 34.12 4.30
6465 8011 2.471815 TGGATTGTACTCCCTCCGAT 57.528 50.000 0.00 0.00 34.12 4.18
6466 8012 2.317040 TGGATTGTACTCCCTCCGATC 58.683 52.381 0.00 0.00 34.12 3.69
6467 8013 1.619332 GGATTGTACTCCCTCCGATCC 59.381 57.143 0.00 0.00 0.00 3.36
6468 8014 2.317040 GATTGTACTCCCTCCGATCCA 58.683 52.381 0.00 0.00 0.00 3.41
6469 8015 2.471815 TTGTACTCCCTCCGATCCAT 57.528 50.000 0.00 0.00 0.00 3.41
6471 8017 3.605726 TGTACTCCCTCCGATCCATAA 57.394 47.619 0.00 0.00 0.00 1.90
6473 8019 5.265290 TGTACTCCCTCCGATCCATAATA 57.735 43.478 0.00 0.00 0.00 0.98
6474 8020 5.014858 TGTACTCCCTCCGATCCATAATAC 58.985 45.833 0.00 0.00 0.00 1.89
6475 8021 4.405756 ACTCCCTCCGATCCATAATACT 57.594 45.455 0.00 0.00 0.00 2.12
6477 8023 4.528596 ACTCCCTCCGATCCATAATACTTG 59.471 45.833 0.00 0.00 0.00 3.16
6478 8024 4.489737 TCCCTCCGATCCATAATACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
6479 8025 4.527038 TCCCTCCGATCCATAATACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
6481 8027 3.909430 TCCGATCCATAATACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
6482 8028 3.572682 TCCGATCCATAATACTTGTCGCT 59.427 43.478 0.00 0.00 0.00 4.93
6483 8029 3.921021 CCGATCCATAATACTTGTCGCTC 59.079 47.826 0.00 0.00 0.00 5.03
6485 8031 4.982295 CGATCCATAATACTTGTCGCTCAA 59.018 41.667 0.00 0.00 34.61 3.02
6486 8032 5.462068 CGATCCATAATACTTGTCGCTCAAA 59.538 40.000 0.00 0.00 35.48 2.69
6487 8033 6.562270 CGATCCATAATACTTGTCGCTCAAAC 60.562 42.308 0.00 0.00 35.48 2.93
6488 8034 4.565166 TCCATAATACTTGTCGCTCAAACG 59.435 41.667 0.00 0.00 35.48 3.60
6490 8036 2.736144 ATACTTGTCGCTCAAACGGA 57.264 45.000 0.00 0.00 35.48 4.69
6491 8037 2.736144 TACTTGTCGCTCAAACGGAT 57.264 45.000 0.00 0.00 35.48 4.18
6492 8038 1.148310 ACTTGTCGCTCAAACGGATG 58.852 50.000 0.00 0.00 35.48 3.51
6493 8039 1.148310 CTTGTCGCTCAAACGGATGT 58.852 50.000 0.00 0.00 35.48 3.06
6494 8040 2.288579 ACTTGTCGCTCAAACGGATGTA 60.289 45.455 0.00 0.00 35.48 2.29
6495 8041 2.665649 TGTCGCTCAAACGGATGTAT 57.334 45.000 0.00 0.00 0.00 2.29
6496 8042 2.536365 TGTCGCTCAAACGGATGTATC 58.464 47.619 0.00 0.00 0.00 2.24
6498 8044 3.379057 TGTCGCTCAAACGGATGTATCTA 59.621 43.478 0.00 0.00 0.00 1.98
6499 8045 3.975670 GTCGCTCAAACGGATGTATCTAG 59.024 47.826 0.00 0.00 0.00 2.43
6500 8046 3.881089 TCGCTCAAACGGATGTATCTAGA 59.119 43.478 0.00 0.00 0.00 2.43
6501 8047 3.975670 CGCTCAAACGGATGTATCTAGAC 59.024 47.826 0.00 0.00 0.00 2.59
6502 8048 3.975670 GCTCAAACGGATGTATCTAGACG 59.024 47.826 0.00 0.00 0.00 4.18
6504 8050 5.277683 GCTCAAACGGATGTATCTAGACGTA 60.278 44.000 0.00 0.00 33.85 3.57
6508 8054 7.859377 TCAAACGGATGTATCTAGACGTATTTC 59.141 37.037 0.00 0.00 33.85 2.17
6511 8057 7.883217 ACGGATGTATCTAGACGTATTTCAAT 58.117 34.615 0.00 0.00 32.30 2.57
6512 8058 8.358148 ACGGATGTATCTAGACGTATTTCAATT 58.642 33.333 0.00 0.00 32.30 2.32
6513 8059 8.851416 CGGATGTATCTAGACGTATTTCAATTC 58.149 37.037 0.00 0.00 0.00 2.17
6524 8070 9.915629 AGACGTATTTCAATTCTAGATACATCC 57.084 33.333 0.00 0.00 0.00 3.51
6526 8072 7.813148 ACGTATTTCAATTCTAGATACATCCGG 59.187 37.037 0.00 0.00 0.00 5.14
6527 8073 8.027189 CGTATTTCAATTCTAGATACATCCGGA 58.973 37.037 6.61 6.61 0.00 5.14
6529 8075 8.783833 ATTTCAATTCTAGATACATCCGGATG 57.216 34.615 37.23 37.23 44.15 3.51
6530 8076 7.539034 TTCAATTCTAGATACATCCGGATGA 57.461 36.000 43.42 28.92 41.20 2.92
6533 8079 3.010420 TCTAGATACATCCGGATGAGCG 58.990 50.000 43.42 25.51 41.20 5.03
6534 8080 1.911057 AGATACATCCGGATGAGCGA 58.089 50.000 43.42 27.03 41.20 4.93
6535 8081 1.542030 AGATACATCCGGATGAGCGAC 59.458 52.381 43.42 28.15 41.20 5.19
6538 8084 0.179100 ACATCCGGATGAGCGACAAG 60.179 55.000 43.42 19.56 41.20 3.16
6539 8085 0.179100 CATCCGGATGAGCGACAAGT 60.179 55.000 36.42 0.00 41.20 3.16
6540 8086 1.067060 CATCCGGATGAGCGACAAGTA 59.933 52.381 36.42 0.00 41.20 2.24
6541 8087 1.179152 TCCGGATGAGCGACAAGTAA 58.821 50.000 0.00 0.00 0.00 2.24
6542 8088 1.754803 TCCGGATGAGCGACAAGTAAT 59.245 47.619 0.00 0.00 0.00 1.89
6543 8089 2.953648 TCCGGATGAGCGACAAGTAATA 59.046 45.455 0.00 0.00 0.00 0.98
6544 8090 3.572682 TCCGGATGAGCGACAAGTAATAT 59.427 43.478 0.00 0.00 0.00 1.28
6545 8091 3.675225 CCGGATGAGCGACAAGTAATATG 59.325 47.826 0.00 0.00 0.00 1.78
6546 8092 3.675225 CGGATGAGCGACAAGTAATATGG 59.325 47.826 0.00 0.00 0.00 2.74
6547 8093 4.558697 CGGATGAGCGACAAGTAATATGGA 60.559 45.833 0.00 0.00 0.00 3.41
6548 8094 4.686554 GGATGAGCGACAAGTAATATGGAC 59.313 45.833 0.00 0.00 0.00 4.02
6549 8095 4.054780 TGAGCGACAAGTAATATGGACC 57.945 45.455 0.00 0.00 0.00 4.46
6550 8096 3.050619 GAGCGACAAGTAATATGGACCG 58.949 50.000 0.00 0.00 0.00 4.79
6586 8195 7.004555 AGACAACAATATGTGTCCTCACTTA 57.995 36.000 9.64 0.00 40.60 2.24
6589 8198 6.995686 ACAACAATATGTGTCCTCACTTACAA 59.004 34.615 0.00 0.00 40.60 2.41
6619 8228 2.292103 GCTTTGTGCAGTTTGGTTCA 57.708 45.000 0.00 0.00 42.31 3.18
6743 8352 3.071479 GGCAAACAGACCTAAATCGACA 58.929 45.455 0.00 0.00 0.00 4.35
6781 8390 2.672651 CATGTTCCCAGCGGCACA 60.673 61.111 1.45 0.00 0.00 4.57
6805 8414 2.707849 CGGTGATCGGTCCGGTTCT 61.708 63.158 12.29 0.00 42.61 3.01
6946 8559 4.095483 GCAACCATGGATAACAGAACAGAG 59.905 45.833 21.47 0.00 0.00 3.35
6947 8560 4.494091 ACCATGGATAACAGAACAGAGG 57.506 45.455 21.47 0.00 0.00 3.69
6948 8561 4.104086 ACCATGGATAACAGAACAGAGGA 58.896 43.478 21.47 0.00 0.00 3.71
7292 9055 3.673597 TCTCCACCTCCCCTCGCT 61.674 66.667 0.00 0.00 0.00 4.93
7293 9056 2.685380 CTCCACCTCCCCTCGCTT 60.685 66.667 0.00 0.00 0.00 4.68
7294 9057 2.683933 TCCACCTCCCCTCGCTTC 60.684 66.667 0.00 0.00 0.00 3.86
7335 9098 2.035783 GAGAGCCCCACCCAAACC 59.964 66.667 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.076100 CGCATGCAGAGGTTAAAGTGA 58.924 47.619 19.57 0.00 0.00 3.41
3 4 2.032550 CCATCGCATGCAGAGGTTAAAG 59.967 50.000 19.57 0.00 0.00 1.85
4 5 2.016318 CCATCGCATGCAGAGGTTAAA 58.984 47.619 19.57 0.00 0.00 1.52
74 75 1.900351 TCCGCCAGGAGATCAACTG 59.100 57.895 9.10 9.10 42.75 3.16
88 89 1.883021 CCACTTTGGGAACATCCGC 59.117 57.895 0.00 0.00 42.32 5.54
118 119 0.187117 TCTCTGGCGATCTGGGAGAT 59.813 55.000 0.00 0.00 37.73 2.75
120 121 1.462731 CCTCTCTGGCGATCTGGGAG 61.463 65.000 6.16 6.16 40.40 4.30
139 140 4.676924 GCACTGAATACAAAACTGCAGAAC 59.323 41.667 23.35 1.34 0.00 3.01
202 203 1.064505 CCCACGCTCAATAATGCAGTG 59.935 52.381 0.00 0.00 35.34 3.66
210 211 1.813859 CGAGACCCCACGCTCAATA 59.186 57.895 0.00 0.00 0.00 1.90
313 314 1.070445 GCAGGCGGCTACATCAGAT 59.930 57.895 12.74 0.00 40.25 2.90
439 440 0.764369 AGTCAGGCTCCAACTGGACA 60.764 55.000 0.00 0.00 39.78 4.02
457 458 4.100035 TGTGGTCTGTCAGATATTGGCTAG 59.900 45.833 5.68 0.00 30.85 3.42
475 476 2.288666 GACACACTTGACACATGTGGT 58.711 47.619 28.64 14.49 46.46 4.16
482 483 0.179067 TTCCGGGACACACTTGACAC 60.179 55.000 0.00 0.00 0.00 3.67
532 533 1.485838 CGCATGAGCACGATGGAGTC 61.486 60.000 0.00 0.00 42.27 3.36
631 632 3.006967 AGGTGAATGAGCGTTACAAGACT 59.993 43.478 0.00 0.00 0.00 3.24
694 695 1.925185 GTTACGATCAAAGACCTCGCC 59.075 52.381 0.00 0.00 35.89 5.54
697 698 6.313905 ACATTGATGTTACGATCAAAGACCTC 59.686 38.462 14.51 0.00 43.77 3.85
705 706 8.310406 GGAATATCACATTGATGTTACGATCA 57.690 34.615 0.00 0.00 38.14 2.92
772 773 8.871629 TTTTTACTCACCAAGCATAAGGAATA 57.128 30.769 0.00 0.00 0.00 1.75
804 805 1.797348 GCCCAACAAAGTGTGTGTTCG 60.797 52.381 0.00 0.00 40.60 3.95
824 825 1.471829 GGTTTGGTTGAGGGCTTGGG 61.472 60.000 0.00 0.00 0.00 4.12
833 834 0.469144 GAGGCCTTGGGTTTGGTTGA 60.469 55.000 6.77 0.00 0.00 3.18
1118 1122 5.558818 TGCTTTGGTAGGTTTTAACGGATA 58.441 37.500 0.00 0.00 0.00 2.59
1207 1211 3.650950 GCCCTTCCCCTGCACTCA 61.651 66.667 0.00 0.00 0.00 3.41
1213 1217 4.410400 GGACACGCCCTTCCCCTG 62.410 72.222 0.00 0.00 0.00 4.45
1348 1355 7.713764 AAACTCCAAAGCATTACAAAACATC 57.286 32.000 0.00 0.00 0.00 3.06
1384 1392 4.220821 ACAACAGTCGTCATAAGAGATGGT 59.779 41.667 0.00 0.00 0.00 3.55
1390 1398 4.316205 ACACACAACAGTCGTCATAAGA 57.684 40.909 0.00 0.00 0.00 2.10
1442 1450 1.410365 CCAACACCACCACCAACCTTA 60.410 52.381 0.00 0.00 0.00 2.69
1443 1451 0.686112 CCAACACCACCACCAACCTT 60.686 55.000 0.00 0.00 0.00 3.50
1444 1452 1.076339 CCAACACCACCACCAACCT 60.076 57.895 0.00 0.00 0.00 3.50
1604 1612 8.915654 CATCGATTTGTAAGGAAAAGAAAAAGG 58.084 33.333 0.00 0.00 0.00 3.11
1617 1626 9.254133 ACATATCAGAAGACATCGATTTGTAAG 57.746 33.333 0.00 0.00 34.73 2.34
1659 1668 7.338449 ACCAAAAATGTGTATGTCCCAGTATAC 59.662 37.037 0.00 0.00 0.00 1.47
1673 1682 8.172352 TGTTATAAGCACTACCAAAAATGTGT 57.828 30.769 0.00 0.00 33.44 3.72
1694 1703 8.158132 TGTAACTGAATATGGTGGAACTTGTTA 58.842 33.333 0.00 0.00 36.74 2.41
1697 1706 7.630242 ATGTAACTGAATATGGTGGAACTTG 57.370 36.000 0.00 0.00 36.74 3.16
1698 1707 9.920946 AATATGTAACTGAATATGGTGGAACTT 57.079 29.630 0.00 0.00 36.74 2.66
1699 1708 9.920946 AAATATGTAACTGAATATGGTGGAACT 57.079 29.630 0.00 0.00 36.74 3.01
1736 1745 9.696917 ATCTGATCAACAAACCATTTAAGAAAC 57.303 29.630 0.00 0.00 0.00 2.78
1762 1771 5.752892 TTACGGTTGCTGTTGAATGTAAA 57.247 34.783 0.00 0.00 0.00 2.01
1798 1807 9.973450 GTGTACTGAAGTCAGATATATGTGAAT 57.027 33.333 13.73 10.34 46.59 2.57
1800 1809 8.519799 TGTGTACTGAAGTCAGATATATGTGA 57.480 34.615 15.15 8.43 46.59 3.58
1841 1850 6.236017 TCGATGTGTGATTTTAACTGAACC 57.764 37.500 0.00 0.00 0.00 3.62
1842 1851 7.298122 ACATCGATGTGTGATTTTAACTGAAC 58.702 34.615 29.49 0.00 40.03 3.18
1850 1859 7.420002 CCATTGATACATCGATGTGTGATTTT 58.580 34.615 35.46 12.97 43.91 1.82
1871 1880 7.128234 AGGAAAGCAACAATAATATGCCATT 57.872 32.000 0.00 0.00 40.93 3.16
1928 1937 5.451908 AGCAGTGTGAATTTTCATGTAACG 58.548 37.500 0.00 0.00 39.73 3.18
2015 2024 3.987868 GTGAAGACAAGAGCGATTGTGTA 59.012 43.478 13.36 0.00 43.32 2.90
2024 2033 3.936564 AGATTCCAGTGAAGACAAGAGC 58.063 45.455 0.00 0.00 33.05 4.09
2165 2174 1.202989 TCACAATTACCTGCCTGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
2238 2247 3.406764 AGTCTGTCTGGAAGTTCAATGC 58.593 45.455 5.01 0.00 33.76 3.56
2569 2578 2.642427 TGTTGCTGCAAGAGTGAAGAA 58.358 42.857 16.53 0.00 30.87 2.52
2579 2588 3.194542 ACCACTTACTTTTGTTGCTGCAA 59.805 39.130 11.69 11.69 0.00 4.08
2590 2599 3.222603 CTGCCTCCAAACCACTTACTTT 58.777 45.455 0.00 0.00 0.00 2.66
2597 2606 1.973812 GCTCCTGCCTCCAAACCAC 60.974 63.158 0.00 0.00 0.00 4.16
2637 2646 2.582052 TCCCAGTAGCAAACTTTGGTG 58.418 47.619 15.08 0.50 42.14 4.17
2775 2790 7.437267 GTCGATTTTCTCTCCCATCGTATTAAA 59.563 37.037 0.00 0.00 39.62 1.52
2820 2841 2.031683 CGAACCCATAGCCGAAATCAAC 59.968 50.000 0.00 0.00 0.00 3.18
2832 2853 2.553466 CCCTTTGTCAACCGAACCCATA 60.553 50.000 0.00 0.00 0.00 2.74
2841 2862 2.296190 GTGATGGTTCCCTTTGTCAACC 59.704 50.000 0.00 0.00 40.16 3.77
2868 2889 5.759963 TCTCTAGAGTTTCTGAAACACGAC 58.240 41.667 28.99 18.46 43.79 4.34
2880 2901 5.538433 ACTGTCTTCAGCTTCTCTAGAGTTT 59.462 40.000 19.21 1.46 44.77 2.66
2881 2902 5.076873 ACTGTCTTCAGCTTCTCTAGAGTT 58.923 41.667 19.21 1.80 44.77 3.01
2882 2903 4.662278 ACTGTCTTCAGCTTCTCTAGAGT 58.338 43.478 19.21 0.00 44.77 3.24
2883 2904 5.645929 TGTACTGTCTTCAGCTTCTCTAGAG 59.354 44.000 13.98 13.98 44.77 2.43
2884 2905 5.561679 TGTACTGTCTTCAGCTTCTCTAGA 58.438 41.667 0.00 0.00 44.77 2.43
2885 2906 5.888691 TGTACTGTCTTCAGCTTCTCTAG 57.111 43.478 0.00 0.00 44.77 2.43
2886 2907 5.770663 ACTTGTACTGTCTTCAGCTTCTCTA 59.229 40.000 0.00 0.00 44.77 2.43
2887 2908 4.586841 ACTTGTACTGTCTTCAGCTTCTCT 59.413 41.667 0.00 0.00 44.77 3.10
2888 2909 4.877282 ACTTGTACTGTCTTCAGCTTCTC 58.123 43.478 0.00 0.00 44.77 2.87
3032 3053 7.095060 TGCTGAAACATGATAGAAAAGTCTCAC 60.095 37.037 0.00 0.00 35.12 3.51
3036 3057 6.902341 TGTGCTGAAACATGATAGAAAAGTC 58.098 36.000 0.00 0.00 0.00 3.01
3233 3262 6.424812 AGAAAATGCAACATGAAAAAGGTAGC 59.575 34.615 0.00 0.00 0.00 3.58
3296 3325 1.728323 TCAGATCACCCTGTCCACAA 58.272 50.000 0.00 0.00 35.71 3.33
3324 3353 2.436824 GGCCAACTCCGCTTCCTC 60.437 66.667 0.00 0.00 0.00 3.71
3369 3398 4.333913 CTGGAAGTATCATGGAGTCCAG 57.666 50.000 18.69 9.89 44.44 3.86
3387 3416 2.880890 GGCACTGGTCTAATAATGCTGG 59.119 50.000 0.00 0.00 33.57 4.85
3396 3425 2.642311 TGGAATCAAGGCACTGGTCTAA 59.358 45.455 0.00 0.00 40.86 2.10
3484 3513 5.655090 TGTACTATGTAGCAGCTAACTTCCA 59.345 40.000 2.87 0.00 0.00 3.53
3532 3561 4.142600 CCTGCGCAAAATCTTAGTTAGCTT 60.143 41.667 13.05 0.00 0.00 3.74
3534 3563 3.487544 CCCTGCGCAAAATCTTAGTTAGC 60.488 47.826 13.05 0.00 0.00 3.09
3671 3701 6.272822 AGGCAAAGAATATGGAAAGTTCAC 57.727 37.500 0.00 0.00 0.00 3.18
3775 3805 6.086785 TCATTTTGCACAGAAACATGATGA 57.913 33.333 0.00 0.00 0.00 2.92
3954 3985 4.058817 CGAGGAACTAAGAAAGCACAACT 58.941 43.478 0.00 0.00 41.55 3.16
3977 4008 3.090210 ACAGTGAATGATGGGCATGAA 57.910 42.857 0.00 0.00 37.28 2.57
4045 4076 6.701841 AGTTAATCGATAAGTGAACGATGCAT 59.298 34.615 0.00 0.00 44.13 3.96
4141 4174 7.675062 AGTCTGACACTCTGATACAAATTTCT 58.325 34.615 10.88 0.00 0.00 2.52
4142 4175 7.897575 AGTCTGACACTCTGATACAAATTTC 57.102 36.000 10.88 0.00 0.00 2.17
4146 4179 9.244292 AGTATTAGTCTGACACTCTGATACAAA 57.756 33.333 10.88 0.00 36.43 2.83
4389 4422 5.405797 CATGGATGACTCGATCGTTCATAT 58.594 41.667 24.98 17.15 40.18 1.78
4461 4494 6.355397 AGATGCATGATTCGAAGTTTACAG 57.645 37.500 2.46 0.00 0.00 2.74
4492 4525 6.321717 ACGTTTGGTATTGTCATATGCAAAG 58.678 36.000 13.92 6.95 0.00 2.77
4510 4555 2.052157 GGTCTCGAGTCTTGACGTTTG 58.948 52.381 13.13 0.00 0.00 2.93
4514 4559 1.740585 AGATGGTCTCGAGTCTTGACG 59.259 52.381 13.13 0.00 0.00 4.35
4525 4576 5.711976 TGATCCCAAAAGAAAAGATGGTCTC 59.288 40.000 0.00 0.00 0.00 3.36
4593 4645 8.480501 GGGAGTATTAACAAACAGGTATAGTCA 58.519 37.037 0.00 0.00 0.00 3.41
4599 4651 5.105228 CGGAGGGAGTATTAACAAACAGGTA 60.105 44.000 0.00 0.00 0.00 3.08
4652 4704 6.657541 ACGCAGACTATTAAGGGAAAAATTGA 59.342 34.615 0.00 0.00 0.00 2.57
4689 4741 2.698855 TGGATGGAAAGACTAGCTGC 57.301 50.000 0.00 0.00 0.00 5.25
4706 4758 2.353610 GGAAAGGGCAGTGGCATGG 61.354 63.158 19.48 0.00 43.71 3.66
4709 4761 1.304381 GATGGAAAGGGCAGTGGCA 60.304 57.895 19.48 0.00 43.71 4.92
4728 4780 4.137543 GACAGGTGCTAATTAAGGGATGG 58.862 47.826 0.00 0.00 0.00 3.51
4738 4790 4.634012 TTGGTTACTGACAGGTGCTAAT 57.366 40.909 7.51 0.00 0.00 1.73
4739 4791 4.634012 ATTGGTTACTGACAGGTGCTAA 57.366 40.909 7.51 1.03 0.00 3.09
4740 4792 4.323417 CAATTGGTTACTGACAGGTGCTA 58.677 43.478 7.51 0.00 0.00 3.49
4741 4793 3.149196 CAATTGGTTACTGACAGGTGCT 58.851 45.455 7.51 0.00 0.00 4.40
4742 4794 2.228822 CCAATTGGTTACTGACAGGTGC 59.771 50.000 16.90 0.00 0.00 5.01
4743 4795 2.228822 GCCAATTGGTTACTGACAGGTG 59.771 50.000 25.19 0.00 37.57 4.00
4744 4796 2.158534 TGCCAATTGGTTACTGACAGGT 60.159 45.455 25.19 0.00 37.57 4.00
4745 4797 2.513753 TGCCAATTGGTTACTGACAGG 58.486 47.619 25.19 0.00 37.57 4.00
4747 4799 2.230992 GCATGCCAATTGGTTACTGACA 59.769 45.455 25.19 13.09 37.57 3.58
4787 6331 0.461548 TTGACTCCTCATAGCGCAGG 59.538 55.000 11.47 7.84 0.00 4.85
4788 6332 2.200067 CTTTGACTCCTCATAGCGCAG 58.800 52.381 11.47 0.00 0.00 5.18
4796 6340 2.251818 CTGTCCTCCTTTGACTCCTCA 58.748 52.381 0.00 0.00 33.83 3.86
4827 6371 4.145876 TGCTGAAAAATAACTGCAGACG 57.854 40.909 23.35 0.00 36.41 4.18
4922 6466 2.406596 TAACACAAAGCCCGGATACC 57.593 50.000 0.73 0.00 0.00 2.73
4932 6476 2.704725 ACCTTGCGCATAACACAAAG 57.295 45.000 12.75 2.00 0.00 2.77
4949 6493 0.986527 TCCCTCCGGTCCTTTTTACC 59.013 55.000 0.00 0.00 0.00 2.85
4952 6496 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
4972 6516 4.635473 TCCTCTAAACTCCATCTCCCAAT 58.365 43.478 0.00 0.00 0.00 3.16
4973 6517 4.033709 CTCCTCTAAACTCCATCTCCCAA 58.966 47.826 0.00 0.00 0.00 4.12
4974 6518 3.631087 CCTCCTCTAAACTCCATCTCCCA 60.631 52.174 0.00 0.00 0.00 4.37
4975 6519 2.969262 CCTCCTCTAAACTCCATCTCCC 59.031 54.545 0.00 0.00 0.00 4.30
4976 6520 3.917300 TCCTCCTCTAAACTCCATCTCC 58.083 50.000 0.00 0.00 0.00 3.71
5017 6561 4.039124 CAGGACTAAAAGCAAACACCCATT 59.961 41.667 0.00 0.00 0.00 3.16
5043 6587 3.074412 CTCGTCTATTGCAAAACAGGGT 58.926 45.455 1.71 0.00 0.00 4.34
5057 6601 6.591750 AATTCCTCAAGAGTTTCTCGTCTA 57.408 37.500 0.00 0.00 35.36 2.59
5225 6769 3.204382 GGTTAGAAGGGATGGGGAATTCA 59.796 47.826 7.93 0.00 0.00 2.57
5292 6836 3.137544 AGGAAGACACAACCACCATAACA 59.862 43.478 0.00 0.00 0.00 2.41
5306 6850 2.632996 CCACAGAACCACTAGGAAGACA 59.367 50.000 0.00 0.00 38.69 3.41
5371 6915 4.080299 GGGTGTTCAGATTTCTACTCCCAT 60.080 45.833 12.61 0.00 41.64 4.00
5502 7046 7.733969 ACAGATATGTGTGAATGAATAGAGCT 58.266 34.615 4.42 0.00 0.00 4.09
5561 7105 5.645497 ACAGGAGCAAAAGAGCATAGTAAAG 59.355 40.000 0.00 0.00 36.85 1.85
5640 7184 1.694696 AGCAGCTAACCATAGGGCTAC 59.305 52.381 0.00 0.00 37.90 3.58
5705 7249 4.835615 AGGACTCTAGATGTTGACTTGTGT 59.164 41.667 0.00 0.00 0.00 3.72
5823 7367 6.471198 CAGTCACATTATTTAGCAATGCAGTG 59.529 38.462 10.38 10.38 36.96 3.66
5831 7375 6.425417 TCAAACGACAGTCACATTATTTAGCA 59.575 34.615 0.41 0.00 0.00 3.49
6089 7634 2.270352 AATGGAAAACGAGCCTGTCA 57.730 45.000 0.00 0.00 0.00 3.58
6178 7723 1.200519 TCTTATCACCCTTCCCCACG 58.799 55.000 0.00 0.00 0.00 4.94
6259 7805 4.020662 GGGGATGGAGATCAGAACATAGTC 60.021 50.000 0.00 0.00 0.00 2.59
6296 7842 3.754965 ACCTGCAACAGTGTCACATTAT 58.245 40.909 5.62 0.00 0.00 1.28
6432 7978 9.880157 GGAGTACAATCCAAATAGTGTAACTTA 57.120 33.333 0.00 0.00 41.60 2.24
6441 7987 4.344102 TCGGAGGGAGTACAATCCAAATAG 59.656 45.833 3.75 0.00 41.52 1.73
6447 7993 1.619332 GGATCGGAGGGAGTACAATCC 59.381 57.143 0.00 0.00 38.76 3.01
6451 7997 3.605726 TTATGGATCGGAGGGAGTACA 57.394 47.619 0.00 0.00 0.00 2.90
6453 7999 5.531753 AGTATTATGGATCGGAGGGAGTA 57.468 43.478 0.00 0.00 0.00 2.59
6455 8001 4.528596 ACAAGTATTATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
6456 8002 4.489737 ACAAGTATTATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
6458 8004 4.486090 CGACAAGTATTATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
6459 8005 3.921021 GCGACAAGTATTATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
6460 8006 3.572682 AGCGACAAGTATTATGGATCGGA 59.427 43.478 0.00 0.00 0.00 4.55
6461 8007 3.914312 AGCGACAAGTATTATGGATCGG 58.086 45.455 0.00 0.00 0.00 4.18
6462 8008 4.546570 TGAGCGACAAGTATTATGGATCG 58.453 43.478 0.00 0.00 0.00 3.69
6465 8011 4.565166 CGTTTGAGCGACAAGTATTATGGA 59.435 41.667 0.00 0.00 39.77 3.41
6466 8012 4.260212 CCGTTTGAGCGACAAGTATTATGG 60.260 45.833 0.00 0.00 39.77 2.74
6467 8013 4.565166 TCCGTTTGAGCGACAAGTATTATG 59.435 41.667 0.00 0.00 39.77 1.90
6468 8014 4.751060 TCCGTTTGAGCGACAAGTATTAT 58.249 39.130 0.00 0.00 39.77 1.28
6469 8015 4.177165 TCCGTTTGAGCGACAAGTATTA 57.823 40.909 0.00 0.00 39.77 0.98
6471 8017 2.736144 TCCGTTTGAGCGACAAGTAT 57.264 45.000 0.00 0.00 39.77 2.12
6473 8019 1.148310 CATCCGTTTGAGCGACAAGT 58.852 50.000 0.00 0.00 39.77 3.16
6474 8020 1.148310 ACATCCGTTTGAGCGACAAG 58.852 50.000 0.00 0.00 39.77 3.16
6475 8021 2.442212 TACATCCGTTTGAGCGACAA 57.558 45.000 0.00 0.00 36.65 3.18
6477 8023 2.810650 AGATACATCCGTTTGAGCGAC 58.189 47.619 0.00 0.00 0.00 5.19
6478 8024 3.881089 TCTAGATACATCCGTTTGAGCGA 59.119 43.478 0.00 0.00 0.00 4.93
6479 8025 3.975670 GTCTAGATACATCCGTTTGAGCG 59.024 47.826 0.00 0.00 0.00 5.03
6481 8027 5.171147 ACGTCTAGATACATCCGTTTGAG 57.829 43.478 0.00 0.00 0.00 3.02
6482 8028 6.872628 ATACGTCTAGATACATCCGTTTGA 57.127 37.500 8.82 0.00 0.00 2.69
6483 8029 7.646526 TGAAATACGTCTAGATACATCCGTTTG 59.353 37.037 8.82 0.00 0.00 2.93
6485 8031 7.268199 TGAAATACGTCTAGATACATCCGTT 57.732 36.000 8.82 0.00 0.00 4.44
6486 8032 6.872628 TGAAATACGTCTAGATACATCCGT 57.127 37.500 8.59 8.59 0.00 4.69
6487 8033 8.744008 AATTGAAATACGTCTAGATACATCCG 57.256 34.615 0.00 0.00 0.00 4.18
6488 8034 9.915629 AGAATTGAAATACGTCTAGATACATCC 57.084 33.333 0.00 0.00 0.00 3.51
6498 8044 9.915629 GGATGTATCTAGAATTGAAATACGTCT 57.084 33.333 14.68 0.00 38.23 4.18
6499 8045 8.851416 CGGATGTATCTAGAATTGAAATACGTC 58.149 37.037 0.00 3.99 37.78 4.34
6500 8046 7.813148 CCGGATGTATCTAGAATTGAAATACGT 59.187 37.037 0.00 0.00 0.00 3.57
6501 8047 8.027189 TCCGGATGTATCTAGAATTGAAATACG 58.973 37.037 0.00 0.00 0.00 3.06
6502 8048 9.877178 ATCCGGATGTATCTAGAATTGAAATAC 57.123 33.333 18.33 0.00 0.00 1.89
6504 8050 8.597167 TCATCCGGATGTATCTAGAATTGAAAT 58.403 33.333 36.95 0.00 39.72 2.17
6508 8054 5.809562 GCTCATCCGGATGTATCTAGAATTG 59.190 44.000 36.95 14.59 39.72 2.32
6511 8057 3.440522 CGCTCATCCGGATGTATCTAGAA 59.559 47.826 36.95 18.81 39.72 2.10
6512 8058 3.010420 CGCTCATCCGGATGTATCTAGA 58.990 50.000 36.95 19.48 39.72 2.43
6513 8059 3.010420 TCGCTCATCCGGATGTATCTAG 58.990 50.000 36.95 28.28 39.72 2.43
6515 8061 1.542030 GTCGCTCATCCGGATGTATCT 59.458 52.381 36.95 5.67 39.72 1.98
6516 8062 1.269723 TGTCGCTCATCCGGATGTATC 59.730 52.381 36.95 26.02 39.72 2.24
6519 8065 0.179100 CTTGTCGCTCATCCGGATGT 60.179 55.000 36.95 8.18 39.72 3.06
6520 8066 0.179100 ACTTGTCGCTCATCCGGATG 60.179 55.000 34.42 34.42 40.09 3.51
6524 8070 3.675225 CCATATTACTTGTCGCTCATCCG 59.325 47.826 0.00 0.00 0.00 4.18
6526 8072 4.686554 GGTCCATATTACTTGTCGCTCATC 59.313 45.833 0.00 0.00 0.00 2.92
6527 8073 4.632153 GGTCCATATTACTTGTCGCTCAT 58.368 43.478 0.00 0.00 0.00 2.90
6529 8075 3.050619 CGGTCCATATTACTTGTCGCTC 58.949 50.000 0.00 0.00 0.00 5.03
6530 8076 2.429610 ACGGTCCATATTACTTGTCGCT 59.570 45.455 0.00 0.00 0.00 4.93
6533 8079 4.586001 TCCCTACGGTCCATATTACTTGTC 59.414 45.833 0.00 0.00 0.00 3.18
6534 8080 4.549668 TCCCTACGGTCCATATTACTTGT 58.450 43.478 0.00 0.00 0.00 3.16
6535 8081 4.587684 ACTCCCTACGGTCCATATTACTTG 59.412 45.833 0.00 0.00 0.00 3.16
6538 8084 4.343239 ACAACTCCCTACGGTCCATATTAC 59.657 45.833 0.00 0.00 0.00 1.89
6539 8085 4.549668 ACAACTCCCTACGGTCCATATTA 58.450 43.478 0.00 0.00 0.00 0.98
6540 8086 3.381335 ACAACTCCCTACGGTCCATATT 58.619 45.455 0.00 0.00 0.00 1.28
6541 8087 3.042059 ACAACTCCCTACGGTCCATAT 57.958 47.619 0.00 0.00 0.00 1.78
6542 8088 2.537633 ACAACTCCCTACGGTCCATA 57.462 50.000 0.00 0.00 0.00 2.74
6543 8089 2.024655 TCTACAACTCCCTACGGTCCAT 60.025 50.000 0.00 0.00 0.00 3.41
6544 8090 1.355381 TCTACAACTCCCTACGGTCCA 59.645 52.381 0.00 0.00 0.00 4.02
6545 8091 1.747924 GTCTACAACTCCCTACGGTCC 59.252 57.143 0.00 0.00 0.00 4.46
6546 8092 2.440409 TGTCTACAACTCCCTACGGTC 58.560 52.381 0.00 0.00 0.00 4.79
6547 8093 2.592102 TGTCTACAACTCCCTACGGT 57.408 50.000 0.00 0.00 0.00 4.83
6559 8105 6.163476 GTGAGGACACATATTGTTGTCTACA 58.837 40.000 8.20 6.63 45.32 2.74
6560 8106 6.648725 GTGAGGACACATATTGTTGTCTAC 57.351 41.667 8.20 4.87 45.32 2.59
6579 8188 5.366460 AGCATCAGATGGATTGTAAGTGAG 58.634 41.667 12.54 0.00 32.57 3.51
6586 8195 3.119245 GCACAAAGCATCAGATGGATTGT 60.119 43.478 12.54 5.84 44.79 2.71
6619 8228 4.399303 CGGTTTGATTCCCTTGCTATTCTT 59.601 41.667 0.00 0.00 0.00 2.52
6805 8414 5.939883 CCATAACAGGATGAACTGAACAGAA 59.060 40.000 8.87 0.00 40.97 3.02
6859 8468 4.081406 TGAACAGCCAGTGATAAAGCATT 58.919 39.130 0.00 0.00 0.00 3.56
7135 8898 0.953960 GTTGGTTTCGCCTCGTGGAT 60.954 55.000 7.92 0.00 38.35 3.41
7405 9179 2.193536 GGATTGGGCGGGAAATCGG 61.194 63.158 0.00 0.00 34.28 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.