Multiple sequence alignment - TraesCS5A01G080600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G080600 chr5A 100.000 4109 0 0 1 4109 102483913 102479805 0.000000e+00 7589.0
1 TraesCS5A01G080600 chr5A 92.810 459 28 3 1 455 102522248 102522705 0.000000e+00 660.0
2 TraesCS5A01G080600 chr7A 97.784 3655 78 3 456 4109 463399497 463395845 0.000000e+00 6298.0
3 TraesCS5A01G080600 chr7A 95.690 3341 124 9 456 3791 96068808 96072133 0.000000e+00 5354.0
4 TraesCS5A01G080600 chr7A 93.548 465 19 4 1 455 382861812 382861349 0.000000e+00 682.0
5 TraesCS5A01G080600 chr2D 86.197 1094 94 21 454 1521 463082497 463081435 0.000000e+00 1131.0
6 TraesCS5A01G080600 chr2D 84.712 713 75 17 2453 3164 463081401 463080722 0.000000e+00 682.0
7 TraesCS5A01G080600 chr2D 90.130 385 36 1 71 455 503008512 503008130 2.210000e-137 499.0
8 TraesCS5A01G080600 chr2D 86.014 429 35 12 3185 3590 463076519 463076093 1.750000e-118 436.0
9 TraesCS5A01G080600 chr2D 82.812 320 34 7 3809 4109 463075594 463075277 2.440000e-67 267.0
10 TraesCS5A01G080600 chr2D 93.750 48 3 0 3157 3204 463079891 463079844 5.700000e-09 73.1
11 TraesCS5A01G080600 chr6D 84.545 1100 107 25 456 1527 160985918 160984854 0.000000e+00 1031.0
12 TraesCS5A01G080600 chr6D 92.382 617 44 3 1602 2216 10438285 10438900 0.000000e+00 876.0
13 TraesCS5A01G080600 chr6D 85.714 462 37 13 3157 3591 160983241 160982782 1.040000e-125 460.0
14 TraesCS5A01G080600 chr6D 88.825 349 33 4 2456 2803 160984825 160984482 1.370000e-114 424.0
15 TraesCS5A01G080600 chr6D 82.188 320 35 8 3809 4109 160982256 160981940 5.270000e-64 255.0
16 TraesCS5A01G080600 chr6D 91.333 150 12 1 3587 3736 160982405 160982257 1.940000e-48 204.0
17 TraesCS5A01G080600 chr3A 88.858 709 76 1 2453 3161 560397462 560398167 0.000000e+00 869.0
18 TraesCS5A01G080600 chr3A 93.333 465 21 2 1 455 579066980 579067444 0.000000e+00 678.0
19 TraesCS5A01G080600 chr3A 87.391 571 42 10 3157 3699 560398961 560399529 2.700000e-176 628.0
20 TraesCS5A01G080600 chr3A 86.534 453 50 6 653 1105 560396610 560397051 4.770000e-134 488.0
21 TraesCS5A01G080600 chr3A 88.889 315 32 3 1205 1518 560397126 560397438 6.440000e-103 385.0
22 TraesCS5A01G080600 chr3A 85.669 314 37 5 3803 4109 560399530 560399842 1.420000e-84 324.0
23 TraesCS5A01G080600 chr3A 92.517 147 11 0 3590 3736 462618112 462617966 1.160000e-50 211.0
24 TraesCS5A01G080600 chr3A 84.103 195 29 2 2249 2443 647617461 647617269 1.950000e-43 187.0
25 TraesCS5A01G080600 chr3A 81.780 236 24 4 3877 4096 462617920 462617688 3.260000e-41 180.0
26 TraesCS5A01G080600 chr3A 85.799 169 9 7 3302 3470 462618473 462618320 9.140000e-37 165.0
27 TraesCS5A01G080600 chr3A 92.391 92 7 0 3157 3248 462618562 462618471 9.270000e-27 132.0
28 TraesCS5A01G080600 chr3A 87.000 100 13 0 3585 3684 722175290 722175389 3.360000e-21 113.0
29 TraesCS5A01G080600 chr3D 84.634 807 72 20 746 1527 217906965 217907744 0.000000e+00 756.0
30 TraesCS5A01G080600 chr3D 85.273 713 86 9 2450 3161 217907767 217908461 0.000000e+00 717.0
31 TraesCS5A01G080600 chr3D 93.333 465 21 3 1 455 261306249 261306713 0.000000e+00 678.0
32 TraesCS5A01G080600 chr3D 84.199 462 41 16 3157 3589 217909268 217909726 1.770000e-113 420.0
33 TraesCS5A01G080600 chr3D 91.333 150 13 0 3587 3736 217911206 217911355 5.380000e-49 206.0
34 TraesCS5A01G080600 chr1A 86.436 693 75 9 2453 3144 578920468 578919794 0.000000e+00 741.0
35 TraesCS5A01G080600 chr1A 92.544 456 28 6 1 455 261770031 261769581 0.000000e+00 649.0
36 TraesCS5A01G080600 chr1A 91.772 474 20 4 1 455 137618776 137618303 3.460000e-180 641.0
37 TraesCS5A01G080600 chr1A 87.023 524 64 2 2624 3147 539236575 539236056 4.580000e-164 588.0
38 TraesCS5A01G080600 chr1A 90.506 158 15 0 3157 3314 539235265 539235108 4.160000e-50 209.0
39 TraesCS5A01G080600 chr1A 83.051 236 21 4 3877 4096 578919576 578919344 3.240000e-46 196.0
40 TraesCS5A01G080600 chr1A 86.047 172 16 4 2453 2624 539237514 539237351 1.170000e-40 178.0
41 TraesCS5A01G080600 chr1A 92.000 125 10 0 3612 3736 578919746 578919622 4.220000e-40 176.0
42 TraesCS5A01G080600 chr3B 84.993 713 88 9 2450 3161 16261635 16262329 0.000000e+00 706.0
43 TraesCS5A01G080600 chr3B 85.950 242 24 8 854 1095 77346893 77346662 2.450000e-62 250.0
44 TraesCS5A01G080600 chr3B 82.043 323 28 13 3296 3591 16263087 16263406 8.820000e-62 248.0
45 TraesCS5A01G080600 chr3B 91.333 150 13 0 3587 3736 16263516 16263665 5.380000e-49 206.0
46 TraesCS5A01G080600 chr3B 85.427 199 23 4 2238 2435 188441390 188441197 6.960000e-48 202.0
47 TraesCS5A01G080600 chr3B 91.304 92 8 0 3157 3248 16263004 16263095 4.310000e-25 126.0
48 TraesCS5A01G080600 chr2A 94.481 453 25 0 3 455 107850135 107849683 0.000000e+00 699.0
49 TraesCS5A01G080600 chr2A 93.819 453 28 0 3 455 107633131 107632679 0.000000e+00 682.0
50 TraesCS5A01G080600 chr2A 91.503 459 34 3 1 455 419858750 419858293 9.700000e-176 627.0
51 TraesCS5A01G080600 chr2A 78.228 395 79 6 456 846 741333371 741332980 3.170000e-61 246.0
52 TraesCS5A01G080600 chr4A 93.133 466 21 4 1 455 242455037 242455502 0.000000e+00 673.0
53 TraesCS5A01G080600 chr6B 91.648 455 37 1 1976 2429 19156117 19156571 2.700000e-176 628.0
54 TraesCS5A01G080600 chr6B 88.018 217 22 3 1544 1759 19155595 19155808 1.900000e-63 254.0
55 TraesCS5A01G080600 chr6B 94.231 104 6 0 1805 1908 19155990 19156093 4.250000e-35 159.0
56 TraesCS5A01G080600 chr7B 84.701 536 60 9 3589 4104 640275952 640276485 2.190000e-142 516.0
57 TraesCS5A01G080600 chr6A 77.234 470 89 14 456 919 27015195 27015652 4.070000e-65 259.0
58 TraesCS5A01G080600 chr1D 95.152 165 7 1 1 165 493146395 493146232 4.070000e-65 259.0
59 TraesCS5A01G080600 chr4B 77.143 385 80 7 455 834 52857691 52857310 2.490000e-52 217.0
60 TraesCS5A01G080600 chrUn 83.590 195 30 2 2249 2443 333692713 333692521 9.070000e-42 182.0
61 TraesCS5A01G080600 chr5D 83.590 195 30 2 2249 2443 124954522 124954330 9.070000e-42 182.0
62 TraesCS5A01G080600 chr5D 83.590 195 30 2 2249 2443 124968507 124968315 9.070000e-42 182.0
63 TraesCS5A01G080600 chr1B 83.077 195 28 3 2249 2443 24604280 24604091 5.460000e-39 172.0
64 TraesCS5A01G080600 chr4D 89.583 48 5 0 455 502 267299505 267299458 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G080600 chr5A 102479805 102483913 4108 True 7589.00 7589 100.000000 1 4109 1 chr5A.!!$R1 4108
1 TraesCS5A01G080600 chr7A 463395845 463399497 3652 True 6298.00 6298 97.784000 456 4109 1 chr7A.!!$R2 3653
2 TraesCS5A01G080600 chr7A 96068808 96072133 3325 False 5354.00 5354 95.690000 456 3791 1 chr7A.!!$F1 3335
3 TraesCS5A01G080600 chr2D 463075277 463082497 7220 True 517.82 1131 86.697000 454 4109 5 chr2D.!!$R2 3655
4 TraesCS5A01G080600 chr6D 10438285 10438900 615 False 876.00 876 92.382000 1602 2216 1 chr6D.!!$F1 614
5 TraesCS5A01G080600 chr6D 160981940 160985918 3978 True 474.80 1031 86.521000 456 4109 5 chr6D.!!$R1 3653
6 TraesCS5A01G080600 chr3A 560396610 560399842 3232 False 538.80 869 87.468200 653 4109 5 chr3A.!!$F3 3456
7 TraesCS5A01G080600 chr3D 217906965 217911355 4390 False 524.75 756 86.359750 746 3736 4 chr3D.!!$F2 2990
8 TraesCS5A01G080600 chr1A 578919344 578920468 1124 True 371.00 741 87.162333 2453 4096 3 chr1A.!!$R4 1643
9 TraesCS5A01G080600 chr1A 539235108 539237514 2406 True 325.00 588 87.858667 2453 3314 3 chr1A.!!$R3 861
10 TraesCS5A01G080600 chr3B 16261635 16263665 2030 False 321.50 706 87.418250 2450 3736 4 chr3B.!!$F1 1286
11 TraesCS5A01G080600 chr6B 19155595 19156571 976 False 347.00 628 91.299000 1544 2429 3 chr6B.!!$F1 885
12 TraesCS5A01G080600 chr7B 640275952 640276485 533 False 516.00 516 84.701000 3589 4104 1 chr7B.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 978 0.324738 TCGAACCCTCTCATCTGCCT 60.325 55.000 0.0 0.0 0.0 4.75 F
1257 1299 0.884259 CGCCATCAACACACAGGACA 60.884 55.000 0.0 0.0 0.0 4.02 F
2735 3735 1.280421 GTGATGTCCTGCCTCCTTCTT 59.720 52.381 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2812 3874 3.825908 ACATGGGTAACATTTGGTCCT 57.174 42.857 0.00 0.00 37.84 3.85 R
2951 4013 4.999950 ACTTTCAAGCAGTATTGTCTCTGG 59.000 41.667 0.00 0.00 32.94 3.86 R
3895 11103 1.625315 TCACTGCCTACTGTGAGCATT 59.375 47.619 6.97 0.02 46.20 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.025445 ACGTATTTATACATTAGACCTTAGCCG 58.975 37.037 0.00 0.00 32.87 5.52
77 78 8.025445 CGTATTTATACATTAGACCTTAGCCGT 58.975 37.037 1.26 0.00 32.87 5.68
80 81 3.729862 ACATTAGACCTTAGCCGTAGC 57.270 47.619 0.00 0.00 40.32 3.58
96 97 6.613755 GCCGTAGCTATTTTTCTTCCATAA 57.386 37.500 0.00 0.00 35.50 1.90
97 98 7.023197 GCCGTAGCTATTTTTCTTCCATAAA 57.977 36.000 0.00 0.00 35.50 1.40
98 99 7.477494 GCCGTAGCTATTTTTCTTCCATAAAA 58.523 34.615 0.00 0.00 35.50 1.52
99 100 7.431376 GCCGTAGCTATTTTTCTTCCATAAAAC 59.569 37.037 0.00 0.00 35.50 2.43
100 101 8.455682 CCGTAGCTATTTTTCTTCCATAAAACA 58.544 33.333 0.00 0.00 0.00 2.83
101 102 9.490663 CGTAGCTATTTTTCTTCCATAAAACAG 57.509 33.333 0.00 0.00 0.00 3.16
102 103 9.290483 GTAGCTATTTTTCTTCCATAAAACAGC 57.710 33.333 0.00 0.00 35.91 4.40
103 104 8.127150 AGCTATTTTTCTTCCATAAAACAGCT 57.873 30.769 7.14 7.14 38.44 4.24
104 105 8.588472 AGCTATTTTTCTTCCATAAAACAGCTT 58.412 29.630 7.14 0.00 39.28 3.74
105 106 8.650714 GCTATTTTTCTTCCATAAAACAGCTTG 58.349 33.333 0.00 0.00 34.43 4.01
106 107 7.967890 ATTTTTCTTCCATAAAACAGCTTGG 57.032 32.000 0.00 0.00 0.00 3.61
107 108 4.519540 TTCTTCCATAAAACAGCTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
108 109 3.766545 TCTTCCATAAAACAGCTTGGCT 58.233 40.909 0.00 0.00 40.77 4.75
109 110 3.758554 TCTTCCATAAAACAGCTTGGCTC 59.241 43.478 0.00 0.00 36.40 4.70
110 111 3.439857 TCCATAAAACAGCTTGGCTCT 57.560 42.857 0.00 0.00 36.40 4.09
111 112 3.084039 TCCATAAAACAGCTTGGCTCTG 58.916 45.455 0.00 0.00 36.40 3.35
112 113 3.084039 CCATAAAACAGCTTGGCTCTGA 58.916 45.455 8.51 0.00 36.40 3.27
113 114 3.698040 CCATAAAACAGCTTGGCTCTGAT 59.302 43.478 8.51 0.00 36.40 2.90
114 115 4.159135 CCATAAAACAGCTTGGCTCTGATT 59.841 41.667 8.51 1.65 36.40 2.57
115 116 5.337009 CCATAAAACAGCTTGGCTCTGATTT 60.337 40.000 8.51 10.49 36.40 2.17
116 117 3.930634 AAACAGCTTGGCTCTGATTTC 57.069 42.857 8.51 0.00 36.40 2.17
117 118 2.875094 ACAGCTTGGCTCTGATTTCT 57.125 45.000 8.51 0.00 36.40 2.52
118 119 2.709213 ACAGCTTGGCTCTGATTTCTC 58.291 47.619 8.51 0.00 36.40 2.87
119 120 2.039480 ACAGCTTGGCTCTGATTTCTCA 59.961 45.455 8.51 0.00 36.40 3.27
120 121 3.079578 CAGCTTGGCTCTGATTTCTCAA 58.920 45.455 0.00 0.00 36.40 3.02
121 122 3.504906 CAGCTTGGCTCTGATTTCTCAAA 59.495 43.478 0.00 0.00 36.40 2.69
122 123 4.158025 CAGCTTGGCTCTGATTTCTCAAAT 59.842 41.667 0.00 0.00 36.40 2.32
123 124 5.356190 CAGCTTGGCTCTGATTTCTCAAATA 59.644 40.000 0.00 0.00 36.40 1.40
124 125 5.589452 AGCTTGGCTCTGATTTCTCAAATAG 59.411 40.000 0.00 0.00 30.62 1.73
125 126 5.732810 GCTTGGCTCTGATTTCTCAAATAGC 60.733 44.000 0.00 0.00 33.85 2.97
126 127 4.202441 TGGCTCTGATTTCTCAAATAGCC 58.798 43.478 11.82 11.82 44.49 3.93
127 128 4.202441 GGCTCTGATTTCTCAAATAGCCA 58.798 43.478 13.12 0.00 44.09 4.75
128 129 4.826183 GGCTCTGATTTCTCAAATAGCCAT 59.174 41.667 13.12 0.00 44.09 4.40
129 130 6.000219 GGCTCTGATTTCTCAAATAGCCATA 59.000 40.000 13.12 0.00 44.09 2.74
130 131 6.488006 GGCTCTGATTTCTCAAATAGCCATAA 59.512 38.462 13.12 0.00 44.09 1.90
131 132 7.176340 GGCTCTGATTTCTCAAATAGCCATAAT 59.824 37.037 13.12 0.00 44.09 1.28
132 133 8.574737 GCTCTGATTTCTCAAATAGCCATAATT 58.425 33.333 0.00 0.00 30.83 1.40
141 142 8.397906 TCTCAAATAGCCATAATTTTTCACTCG 58.602 33.333 0.00 0.00 0.00 4.18
142 143 8.050778 TCAAATAGCCATAATTTTTCACTCGT 57.949 30.769 0.00 0.00 0.00 4.18
143 144 8.519526 TCAAATAGCCATAATTTTTCACTCGTT 58.480 29.630 0.00 0.00 0.00 3.85
144 145 9.139174 CAAATAGCCATAATTTTTCACTCGTTT 57.861 29.630 0.00 0.00 0.00 3.60
148 149 7.480810 AGCCATAATTTTTCACTCGTTTATCC 58.519 34.615 0.00 0.00 0.00 2.59
149 150 7.122055 AGCCATAATTTTTCACTCGTTTATCCA 59.878 33.333 0.00 0.00 0.00 3.41
150 151 7.757624 GCCATAATTTTTCACTCGTTTATCCAA 59.242 33.333 0.00 0.00 0.00 3.53
151 152 9.632807 CCATAATTTTTCACTCGTTTATCCAAA 57.367 29.630 0.00 0.00 0.00 3.28
159 160 9.443323 TTTCACTCGTTTATCCAAATTAGATGA 57.557 29.630 1.99 0.00 0.00 2.92
160 161 9.443323 TTCACTCGTTTATCCAAATTAGATGAA 57.557 29.630 1.99 0.00 0.00 2.57
161 162 9.443323 TCACTCGTTTATCCAAATTAGATGAAA 57.557 29.630 1.99 0.00 0.00 2.69
162 163 9.490663 CACTCGTTTATCCAAATTAGATGAAAC 57.509 33.333 1.99 7.03 0.00 2.78
163 164 9.226606 ACTCGTTTATCCAAATTAGATGAAACA 57.773 29.630 14.80 0.00 0.00 2.83
165 166 9.834628 TCGTTTATCCAAATTAGATGAAACAAC 57.165 29.630 14.80 0.00 0.00 3.32
166 167 9.840427 CGTTTATCCAAATTAGATGAAACAACT 57.160 29.630 14.80 0.00 0.00 3.16
170 171 7.504924 TCCAAATTAGATGAAACAACTTCGT 57.495 32.000 0.00 0.00 36.78 3.85
171 172 7.581476 TCCAAATTAGATGAAACAACTTCGTC 58.419 34.615 0.00 0.00 46.53 4.20
179 180 7.138126 GATGAAACAACTTCGTCTTGTTTTC 57.862 36.000 16.24 10.45 46.80 2.29
180 181 6.003234 TGAAACAACTTCGTCTTGTTTTCA 57.997 33.333 16.24 13.50 46.80 2.69
181 182 5.854338 TGAAACAACTTCGTCTTGTTTTCAC 59.146 36.000 16.24 8.75 46.80 3.18
182 183 4.351131 ACAACTTCGTCTTGTTTTCACC 57.649 40.909 0.00 0.00 0.00 4.02
183 184 4.007659 ACAACTTCGTCTTGTTTTCACCT 58.992 39.130 0.00 0.00 0.00 4.00
184 185 5.180271 ACAACTTCGTCTTGTTTTCACCTA 58.820 37.500 0.00 0.00 0.00 3.08
185 186 5.820947 ACAACTTCGTCTTGTTTTCACCTAT 59.179 36.000 0.00 0.00 0.00 2.57
186 187 6.018180 ACAACTTCGTCTTGTTTTCACCTATC 60.018 38.462 0.00 0.00 0.00 2.08
187 188 4.995487 ACTTCGTCTTGTTTTCACCTATCC 59.005 41.667 0.00 0.00 0.00 2.59
188 189 4.610605 TCGTCTTGTTTTCACCTATCCA 57.389 40.909 0.00 0.00 0.00 3.41
189 190 4.566004 TCGTCTTGTTTTCACCTATCCAG 58.434 43.478 0.00 0.00 0.00 3.86
190 191 4.039973 TCGTCTTGTTTTCACCTATCCAGT 59.960 41.667 0.00 0.00 0.00 4.00
191 192 4.152402 CGTCTTGTTTTCACCTATCCAGTG 59.848 45.833 0.00 0.00 36.54 3.66
192 193 5.305585 GTCTTGTTTTCACCTATCCAGTGA 58.694 41.667 0.00 0.00 42.36 3.41
197 198 3.313012 TTCACCTATCCAGTGAACGTG 57.687 47.619 2.36 0.00 46.50 4.49
198 199 2.244695 TCACCTATCCAGTGAACGTGT 58.755 47.619 0.00 0.00 41.17 4.49
199 200 2.230508 TCACCTATCCAGTGAACGTGTC 59.769 50.000 0.00 0.00 41.17 3.67
200 201 2.029380 CACCTATCCAGTGAACGTGTCA 60.029 50.000 0.00 0.00 37.42 3.58
211 212 4.955925 TGAACGTGTCACATCAACTTTT 57.044 36.364 3.42 0.00 0.00 2.27
212 213 5.303747 TGAACGTGTCACATCAACTTTTT 57.696 34.783 3.42 0.00 0.00 1.94
213 214 5.092105 TGAACGTGTCACATCAACTTTTTG 58.908 37.500 3.42 0.00 0.00 2.44
214 215 4.955925 ACGTGTCACATCAACTTTTTGA 57.044 36.364 3.42 0.00 45.93 2.69
215 216 5.303747 ACGTGTCACATCAACTTTTTGAA 57.696 34.783 3.42 0.00 45.01 2.69
216 217 5.704888 ACGTGTCACATCAACTTTTTGAAA 58.295 33.333 3.42 0.00 45.01 2.69
217 218 6.329496 ACGTGTCACATCAACTTTTTGAAAT 58.671 32.000 3.42 0.00 45.01 2.17
218 219 6.811170 ACGTGTCACATCAACTTTTTGAAATT 59.189 30.769 3.42 0.00 45.01 1.82
219 220 7.330700 ACGTGTCACATCAACTTTTTGAAATTT 59.669 29.630 3.42 0.00 45.01 1.82
220 221 8.167985 CGTGTCACATCAACTTTTTGAAATTTT 58.832 29.630 3.42 0.00 45.01 1.82
221 222 9.476761 GTGTCACATCAACTTTTTGAAATTTTC 57.523 29.630 2.05 2.05 45.01 2.29
222 223 9.212641 TGTCACATCAACTTTTTGAAATTTTCA 57.787 25.926 7.74 7.74 45.01 2.69
241 242 9.971744 AATTTTCAAGTTTCGAATTTTGTTCAG 57.028 25.926 16.82 0.00 0.00 3.02
242 243 8.749841 TTTTCAAGTTTCGAATTTTGTTCAGA 57.250 26.923 16.82 1.32 0.00 3.27
243 244 8.925161 TTTCAAGTTTCGAATTTTGTTCAGAT 57.075 26.923 16.82 0.00 0.00 2.90
244 245 8.925161 TTCAAGTTTCGAATTTTGTTCAGATT 57.075 26.923 16.82 0.00 0.00 2.40
245 246 8.560576 TCAAGTTTCGAATTTTGTTCAGATTC 57.439 30.769 16.82 0.00 0.00 2.52
246 247 8.187480 TCAAGTTTCGAATTTTGTTCAGATTCA 58.813 29.630 16.82 0.00 31.69 2.57
247 248 8.971321 CAAGTTTCGAATTTTGTTCAGATTCAT 58.029 29.630 0.00 0.00 31.69 2.57
277 278 9.573133 CAAACTTCTTTTGAACATAACTTGAGT 57.427 29.630 0.00 0.00 46.76 3.41
280 281 9.788960 ACTTCTTTTGAACATAACTTGAGTTTC 57.211 29.630 1.20 0.00 35.67 2.78
281 282 8.835467 TTCTTTTGAACATAACTTGAGTTTCG 57.165 30.769 1.20 0.00 35.11 3.46
282 283 7.981142 TCTTTTGAACATAACTTGAGTTTCGT 58.019 30.769 1.20 0.00 39.31 3.85
283 284 9.100554 TCTTTTGAACATAACTTGAGTTTCGTA 57.899 29.630 1.20 0.00 39.31 3.43
284 285 9.710979 CTTTTGAACATAACTTGAGTTTCGTAA 57.289 29.630 1.20 0.00 39.31 3.18
285 286 9.493206 TTTTGAACATAACTTGAGTTTCGTAAC 57.507 29.630 1.20 0.00 39.31 2.50
298 299 6.701432 AGTTTCGTAACTCCGATTTAGTTG 57.299 37.500 1.05 0.00 40.60 3.16
299 300 6.449698 AGTTTCGTAACTCCGATTTAGTTGA 58.550 36.000 1.05 0.00 40.60 3.18
300 301 7.095270 AGTTTCGTAACTCCGATTTAGTTGAT 58.905 34.615 1.05 0.00 40.60 2.57
301 302 7.601508 AGTTTCGTAACTCCGATTTAGTTGATT 59.398 33.333 1.05 0.00 40.60 2.57
302 303 7.515957 TTCGTAACTCCGATTTAGTTGATTC 57.484 36.000 0.00 0.00 37.71 2.52
303 304 6.860080 TCGTAACTCCGATTTAGTTGATTCT 58.140 36.000 0.00 0.00 37.71 2.40
304 305 7.318141 TCGTAACTCCGATTTAGTTGATTCTT 58.682 34.615 0.00 0.00 37.71 2.52
305 306 7.816031 TCGTAACTCCGATTTAGTTGATTCTTT 59.184 33.333 0.00 0.00 37.71 2.52
306 307 8.440833 CGTAACTCCGATTTAGTTGATTCTTTT 58.559 33.333 0.00 0.00 37.71 2.27
309 310 7.084486 ACTCCGATTTAGTTGATTCTTTTTGC 58.916 34.615 0.00 0.00 0.00 3.68
310 311 6.976088 TCCGATTTAGTTGATTCTTTTTGCA 58.024 32.000 0.00 0.00 0.00 4.08
311 312 7.429633 TCCGATTTAGTTGATTCTTTTTGCAA 58.570 30.769 0.00 0.00 0.00 4.08
312 313 7.923344 TCCGATTTAGTTGATTCTTTTTGCAAA 59.077 29.630 8.05 8.05 0.00 3.68
313 314 8.711457 CCGATTTAGTTGATTCTTTTTGCAAAT 58.289 29.630 13.65 0.00 0.00 2.32
314 315 9.731519 CGATTTAGTTGATTCTTTTTGCAAATC 57.268 29.630 13.65 7.73 0.00 2.17
315 316 9.731519 GATTTAGTTGATTCTTTTTGCAAATCG 57.268 29.630 13.65 7.27 33.13 3.34
316 317 8.864069 TTTAGTTGATTCTTTTTGCAAATCGA 57.136 26.923 13.65 9.59 33.13 3.59
317 318 8.864069 TTAGTTGATTCTTTTTGCAAATCGAA 57.136 26.923 13.65 17.38 33.13 3.71
318 319 7.398834 AGTTGATTCTTTTTGCAAATCGAAG 57.601 32.000 13.65 13.61 33.13 3.79
319 320 5.827568 TGATTCTTTTTGCAAATCGAAGC 57.172 34.783 22.11 22.11 33.13 3.86
320 321 5.531634 TGATTCTTTTTGCAAATCGAAGCT 58.468 33.333 25.77 14.19 33.13 3.74
321 322 5.630680 TGATTCTTTTTGCAAATCGAAGCTC 59.369 36.000 25.77 19.27 33.13 4.09
322 323 4.836125 TCTTTTTGCAAATCGAAGCTCT 57.164 36.364 13.65 0.00 0.00 4.09
323 324 5.186996 TCTTTTTGCAAATCGAAGCTCTT 57.813 34.783 13.65 0.00 0.00 2.85
324 325 4.977963 TCTTTTTGCAAATCGAAGCTCTTG 59.022 37.500 13.65 0.00 0.00 3.02
325 326 4.566545 TTTTGCAAATCGAAGCTCTTGA 57.433 36.364 13.65 0.00 0.00 3.02
326 327 3.542712 TTGCAAATCGAAGCTCTTGAC 57.457 42.857 0.00 0.00 0.00 3.18
327 328 1.806542 TGCAAATCGAAGCTCTTGACC 59.193 47.619 8.91 0.00 0.00 4.02
328 329 2.079925 GCAAATCGAAGCTCTTGACCT 58.920 47.619 0.00 0.00 0.00 3.85
329 330 3.262420 GCAAATCGAAGCTCTTGACCTA 58.738 45.455 0.00 0.00 0.00 3.08
330 331 3.684788 GCAAATCGAAGCTCTTGACCTAA 59.315 43.478 0.00 0.00 0.00 2.69
331 332 4.154195 GCAAATCGAAGCTCTTGACCTAAA 59.846 41.667 0.00 0.00 0.00 1.85
332 333 5.622378 CAAATCGAAGCTCTTGACCTAAAC 58.378 41.667 0.00 0.00 0.00 2.01
333 334 4.810191 ATCGAAGCTCTTGACCTAAACT 57.190 40.909 0.00 0.00 0.00 2.66
334 335 4.602340 TCGAAGCTCTTGACCTAAACTT 57.398 40.909 0.00 0.00 0.00 2.66
335 336 4.957296 TCGAAGCTCTTGACCTAAACTTT 58.043 39.130 0.00 0.00 0.00 2.66
336 337 4.989168 TCGAAGCTCTTGACCTAAACTTTC 59.011 41.667 0.00 0.00 0.00 2.62
337 338 4.991687 CGAAGCTCTTGACCTAAACTTTCT 59.008 41.667 0.00 0.00 0.00 2.52
338 339 5.107298 CGAAGCTCTTGACCTAAACTTTCTG 60.107 44.000 0.00 0.00 0.00 3.02
339 340 5.552870 AGCTCTTGACCTAAACTTTCTGA 57.447 39.130 0.00 0.00 0.00 3.27
340 341 6.120507 AGCTCTTGACCTAAACTTTCTGAT 57.879 37.500 0.00 0.00 0.00 2.90
341 342 7.246171 AGCTCTTGACCTAAACTTTCTGATA 57.754 36.000 0.00 0.00 0.00 2.15
342 343 7.680730 AGCTCTTGACCTAAACTTTCTGATAA 58.319 34.615 0.00 0.00 0.00 1.75
343 344 7.821846 AGCTCTTGACCTAAACTTTCTGATAAG 59.178 37.037 0.00 0.00 0.00 1.73
344 345 7.065204 GCTCTTGACCTAAACTTTCTGATAAGG 59.935 40.741 0.00 0.00 0.00 2.69
345 346 6.879458 TCTTGACCTAAACTTTCTGATAAGGC 59.121 38.462 0.00 0.00 0.00 4.35
346 347 5.497474 TGACCTAAACTTTCTGATAAGGCC 58.503 41.667 0.00 0.00 0.00 5.19
347 348 5.013704 TGACCTAAACTTTCTGATAAGGCCA 59.986 40.000 5.01 0.00 0.00 5.36
348 349 5.887754 ACCTAAACTTTCTGATAAGGCCAA 58.112 37.500 5.01 0.00 0.00 4.52
349 350 6.311735 ACCTAAACTTTCTGATAAGGCCAAA 58.688 36.000 5.01 0.00 0.00 3.28
350 351 6.954102 ACCTAAACTTTCTGATAAGGCCAAAT 59.046 34.615 5.01 0.00 0.00 2.32
351 352 7.454694 ACCTAAACTTTCTGATAAGGCCAAATT 59.545 33.333 5.01 0.00 0.00 1.82
352 353 7.976175 CCTAAACTTTCTGATAAGGCCAAATTC 59.024 37.037 5.01 0.00 0.00 2.17
353 354 6.916360 AACTTTCTGATAAGGCCAAATTCA 57.084 33.333 5.01 1.16 0.00 2.57
354 355 6.272822 ACTTTCTGATAAGGCCAAATTCAC 57.727 37.500 5.01 0.00 0.00 3.18
355 356 5.774690 ACTTTCTGATAAGGCCAAATTCACA 59.225 36.000 5.01 0.00 0.00 3.58
356 357 6.438425 ACTTTCTGATAAGGCCAAATTCACAT 59.562 34.615 5.01 0.00 0.00 3.21
357 358 7.615365 ACTTTCTGATAAGGCCAAATTCACATA 59.385 33.333 5.01 0.00 0.00 2.29
358 359 7.953005 TTCTGATAAGGCCAAATTCACATAA 57.047 32.000 5.01 0.00 0.00 1.90
359 360 8.537728 TTCTGATAAGGCCAAATTCACATAAT 57.462 30.769 5.01 0.00 0.00 1.28
360 361 8.537728 TCTGATAAGGCCAAATTCACATAATT 57.462 30.769 5.01 0.00 0.00 1.40
361 362 8.980596 TCTGATAAGGCCAAATTCACATAATTT 58.019 29.630 5.01 0.00 0.00 1.82
362 363 9.603921 CTGATAAGGCCAAATTCACATAATTTT 57.396 29.630 5.01 0.00 0.00 1.82
363 364 9.381033 TGATAAGGCCAAATTCACATAATTTTG 57.619 29.630 5.01 0.00 0.00 2.44
364 365 8.735692 ATAAGGCCAAATTCACATAATTTTGG 57.264 30.769 5.01 8.54 0.00 3.28
365 366 6.125589 AGGCCAAATTCACATAATTTTGGT 57.874 33.333 5.01 0.00 0.00 3.67
366 367 7.251321 AGGCCAAATTCACATAATTTTGGTA 57.749 32.000 5.01 0.00 0.00 3.25
367 368 7.860584 AGGCCAAATTCACATAATTTTGGTAT 58.139 30.769 5.01 2.20 0.00 2.73
368 369 8.328014 AGGCCAAATTCACATAATTTTGGTATT 58.672 29.630 5.01 0.00 0.00 1.89
369 370 8.397148 GGCCAAATTCACATAATTTTGGTATTG 58.603 33.333 13.15 0.00 0.00 1.90
370 371 8.945057 GCCAAATTCACATAATTTTGGTATTGT 58.055 29.630 13.15 0.00 0.00 2.71
416 417 9.260002 CAAAAGTTATTTGCTAGGTTTTGATGT 57.740 29.630 0.00 0.00 36.12 3.06
417 418 9.830975 AAAAGTTATTTGCTAGGTTTTGATGTT 57.169 25.926 0.00 0.00 0.00 2.71
418 419 9.830975 AAAGTTATTTGCTAGGTTTTGATGTTT 57.169 25.926 0.00 0.00 0.00 2.83
419 420 9.830975 AAGTTATTTGCTAGGTTTTGATGTTTT 57.169 25.926 0.00 0.00 0.00 2.43
420 421 9.476202 AGTTATTTGCTAGGTTTTGATGTTTTC 57.524 29.630 0.00 0.00 0.00 2.29
421 422 8.708742 GTTATTTGCTAGGTTTTGATGTTTTCC 58.291 33.333 0.00 0.00 0.00 3.13
422 423 4.497473 TGCTAGGTTTTGATGTTTTCCG 57.503 40.909 0.00 0.00 0.00 4.30
423 424 4.138290 TGCTAGGTTTTGATGTTTTCCGA 58.862 39.130 0.00 0.00 0.00 4.55
424 425 4.580995 TGCTAGGTTTTGATGTTTTCCGAA 59.419 37.500 0.00 0.00 0.00 4.30
425 426 4.915667 GCTAGGTTTTGATGTTTTCCGAAC 59.084 41.667 0.00 0.00 0.00 3.95
426 427 5.278315 GCTAGGTTTTGATGTTTTCCGAACT 60.278 40.000 0.00 0.00 0.00 3.01
427 428 4.932146 AGGTTTTGATGTTTTCCGAACTG 58.068 39.130 0.00 0.00 0.00 3.16
428 429 4.401202 AGGTTTTGATGTTTTCCGAACTGT 59.599 37.500 0.00 0.00 0.00 3.55
429 430 4.738252 GGTTTTGATGTTTTCCGAACTGTC 59.262 41.667 0.00 0.00 0.00 3.51
430 431 5.449999 GGTTTTGATGTTTTCCGAACTGTCT 60.450 40.000 0.00 0.00 0.00 3.41
431 432 5.828299 TTTGATGTTTTCCGAACTGTCTT 57.172 34.783 0.00 0.00 0.00 3.01
432 433 5.418310 TTGATGTTTTCCGAACTGTCTTC 57.582 39.130 0.00 0.00 0.00 2.87
433 434 4.703897 TGATGTTTTCCGAACTGTCTTCT 58.296 39.130 0.00 0.00 0.00 2.85
434 435 5.123227 TGATGTTTTCCGAACTGTCTTCTT 58.877 37.500 0.00 0.00 0.00 2.52
435 436 5.236478 TGATGTTTTCCGAACTGTCTTCTTC 59.764 40.000 0.00 0.00 0.00 2.87
436 437 3.554324 TGTTTTCCGAACTGTCTTCTTCG 59.446 43.478 0.00 0.00 39.19 3.79
437 438 3.447918 TTTCCGAACTGTCTTCTTCGT 57.552 42.857 0.00 0.00 38.05 3.85
438 439 3.447918 TTCCGAACTGTCTTCTTCGTT 57.552 42.857 0.00 0.00 38.05 3.85
439 440 3.009301 TCCGAACTGTCTTCTTCGTTC 57.991 47.619 0.00 0.00 38.05 3.95
440 441 2.621998 TCCGAACTGTCTTCTTCGTTCT 59.378 45.455 0.00 0.00 38.05 3.01
441 442 3.067742 TCCGAACTGTCTTCTTCGTTCTT 59.932 43.478 0.00 0.00 38.05 2.52
442 443 3.425858 CCGAACTGTCTTCTTCGTTCTTC 59.574 47.826 0.00 0.00 38.05 2.87
443 444 3.425858 CGAACTGTCTTCTTCGTTCTTCC 59.574 47.826 0.00 0.00 35.59 3.46
444 445 3.388345 ACTGTCTTCTTCGTTCTTCCC 57.612 47.619 0.00 0.00 0.00 3.97
445 446 2.288273 ACTGTCTTCTTCGTTCTTCCCG 60.288 50.000 0.00 0.00 0.00 5.14
446 447 1.958579 TGTCTTCTTCGTTCTTCCCGA 59.041 47.619 0.00 0.00 0.00 5.14
447 448 2.561419 TGTCTTCTTCGTTCTTCCCGAT 59.439 45.455 0.00 0.00 33.81 4.18
448 449 3.180613 GTCTTCTTCGTTCTTCCCGATC 58.819 50.000 0.00 0.00 33.81 3.69
449 450 3.090037 TCTTCTTCGTTCTTCCCGATCT 58.910 45.455 0.00 0.00 33.81 2.75
450 451 3.510360 TCTTCTTCGTTCTTCCCGATCTT 59.490 43.478 0.00 0.00 33.81 2.40
451 452 3.505464 TCTTCGTTCTTCCCGATCTTC 57.495 47.619 0.00 0.00 33.81 2.87
452 453 3.090037 TCTTCGTTCTTCCCGATCTTCT 58.910 45.455 0.00 0.00 33.81 2.85
519 520 5.531287 GGAAAAGATACTATTGCCGTCCAAT 59.469 40.000 4.32 4.32 45.75 3.16
542 543 9.874205 CAATAGTTGATTGGGAAATGTTGTAAT 57.126 29.630 0.00 0.00 41.23 1.89
584 585 5.570320 ACCAATAAACAGTAGCAGACCATT 58.430 37.500 0.00 0.00 0.00 3.16
598 599 1.489230 GACCATTGGACGGGAATACCT 59.511 52.381 10.37 0.00 36.97 3.08
622 623 4.419522 ACATTTAATGTCGAACTGTGGC 57.580 40.909 4.56 0.00 39.92 5.01
948 971 1.901948 ACGTGCTCGAACCCTCTCA 60.902 57.895 16.04 0.00 40.62 3.27
955 978 0.324738 TCGAACCCTCTCATCTGCCT 60.325 55.000 0.00 0.00 0.00 4.75
1116 1140 4.815108 TCCTCGGAGGCGCTGCTA 62.815 66.667 19.48 0.00 34.61 3.49
1167 1191 1.676678 CCTACCTCGCCTTGCAGCTA 61.677 60.000 0.00 0.00 0.00 3.32
1192 1216 3.842925 TTGGGTTCCAGGCGAGTGC 62.843 63.158 0.00 0.00 41.71 4.40
1257 1299 0.884259 CGCCATCAACACACAGGACA 60.884 55.000 0.00 0.00 0.00 4.02
1585 1632 6.296026 TGCTACTTGTCATCCACTTTAAAGT 58.704 36.000 15.22 15.22 40.60 2.66
1640 1687 5.588648 AGTTCGGTTGACTGAATTTTTCTGA 59.411 36.000 8.50 0.00 42.55 3.27
1686 1734 5.360714 ACTGAACACCATGTCTGAATTTTGT 59.639 36.000 0.00 0.00 0.00 2.83
1849 2056 1.998315 CAGAAGACATGCTCCTGAACG 59.002 52.381 0.00 0.00 0.00 3.95
2147 2354 4.022849 GTGACATGCTAGCTTGAGGTTTTT 60.023 41.667 30.96 11.56 0.00 1.94
2168 2375 7.648039 TTTTAGTGGAAACCTACAACACAAT 57.352 32.000 0.00 0.00 34.65 2.71
2565 2786 9.847706 ATTCTACATTCTGCATAGTACTTATCG 57.152 33.333 0.00 0.00 0.00 2.92
2566 2787 8.617290 TCTACATTCTGCATAGTACTTATCGA 57.383 34.615 0.00 0.00 0.00 3.59
2735 3735 1.280421 GTGATGTCCTGCCTCCTTCTT 59.720 52.381 0.00 0.00 0.00 2.52
3509 8830 3.687551 CGGGGTGTCCTCATAGTTCTCTA 60.688 52.174 0.00 0.00 0.00 2.43
3895 11103 4.783055 TCCTGTAGTAAACAACTTTGGCA 58.217 39.130 0.00 0.00 39.80 4.92
3953 11162 3.064324 CGTCGGGGGTCGGTAAGT 61.064 66.667 0.00 0.00 39.77 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.025445 CGGCTAAGGTCTAATGTATAAATACGT 58.975 37.037 0.00 0.00 36.06 3.57
51 52 8.025445 ACGGCTAAGGTCTAATGTATAAATACG 58.975 37.037 0.00 0.00 36.06 3.06
54 55 8.033626 GCTACGGCTAAGGTCTAATGTATAAAT 58.966 37.037 0.00 0.00 35.22 1.40
55 56 7.373493 GCTACGGCTAAGGTCTAATGTATAAA 58.627 38.462 0.00 0.00 35.22 1.40
56 57 6.917533 GCTACGGCTAAGGTCTAATGTATAA 58.082 40.000 0.00 0.00 35.22 0.98
57 58 6.506500 GCTACGGCTAAGGTCTAATGTATA 57.493 41.667 0.00 0.00 35.22 1.47
58 59 5.388408 GCTACGGCTAAGGTCTAATGTAT 57.612 43.478 0.00 0.00 35.22 2.29
59 60 4.843220 GCTACGGCTAAGGTCTAATGTA 57.157 45.455 0.00 0.00 35.22 2.29
60 61 3.729862 GCTACGGCTAAGGTCTAATGT 57.270 47.619 0.00 0.00 35.22 2.71
73 74 6.613755 TTATGGAAGAAAAATAGCTACGGC 57.386 37.500 0.00 0.00 39.06 5.68
74 75 8.455682 TGTTTTATGGAAGAAAAATAGCTACGG 58.544 33.333 0.00 0.00 0.00 4.02
75 76 9.490663 CTGTTTTATGGAAGAAAAATAGCTACG 57.509 33.333 0.00 0.00 30.51 3.51
80 81 9.143631 CCAAGCTGTTTTATGGAAGAAAAATAG 57.856 33.333 0.00 0.00 37.07 1.73
81 82 7.602265 GCCAAGCTGTTTTATGGAAGAAAAATA 59.398 33.333 3.98 0.00 34.82 1.40
82 83 6.427853 GCCAAGCTGTTTTATGGAAGAAAAAT 59.572 34.615 3.98 0.00 34.82 1.82
83 84 5.757808 GCCAAGCTGTTTTATGGAAGAAAAA 59.242 36.000 3.98 0.00 34.82 1.94
84 85 5.070313 AGCCAAGCTGTTTTATGGAAGAAAA 59.930 36.000 3.98 0.00 37.57 2.29
85 86 4.588528 AGCCAAGCTGTTTTATGGAAGAAA 59.411 37.500 3.98 0.00 37.57 2.52
86 87 4.151883 AGCCAAGCTGTTTTATGGAAGAA 58.848 39.130 3.98 0.00 37.57 2.52
87 88 3.758554 GAGCCAAGCTGTTTTATGGAAGA 59.241 43.478 3.98 0.00 39.88 2.87
88 89 3.760684 AGAGCCAAGCTGTTTTATGGAAG 59.239 43.478 3.98 0.00 39.88 3.46
89 90 3.507233 CAGAGCCAAGCTGTTTTATGGAA 59.493 43.478 3.98 0.00 39.88 3.53
90 91 3.084039 CAGAGCCAAGCTGTTTTATGGA 58.916 45.455 3.98 0.00 39.88 3.41
91 92 3.084039 TCAGAGCCAAGCTGTTTTATGG 58.916 45.455 0.00 0.00 39.88 2.74
92 93 4.978083 ATCAGAGCCAAGCTGTTTTATG 57.022 40.909 0.00 0.00 39.88 1.90
93 94 5.713861 AGAAATCAGAGCCAAGCTGTTTTAT 59.286 36.000 0.00 0.00 39.88 1.40
94 95 5.072741 AGAAATCAGAGCCAAGCTGTTTTA 58.927 37.500 0.00 0.00 39.88 1.52
95 96 3.893813 AGAAATCAGAGCCAAGCTGTTTT 59.106 39.130 0.00 0.00 39.88 2.43
96 97 3.494332 AGAAATCAGAGCCAAGCTGTTT 58.506 40.909 0.00 0.00 39.88 2.83
97 98 3.080319 GAGAAATCAGAGCCAAGCTGTT 58.920 45.455 0.00 0.00 39.88 3.16
98 99 2.039480 TGAGAAATCAGAGCCAAGCTGT 59.961 45.455 0.00 0.00 39.88 4.40
99 100 2.708051 TGAGAAATCAGAGCCAAGCTG 58.292 47.619 0.00 0.00 39.88 4.24
100 101 3.430042 TTGAGAAATCAGAGCCAAGCT 57.570 42.857 0.00 0.00 43.88 3.74
101 102 4.715527 ATTTGAGAAATCAGAGCCAAGC 57.284 40.909 0.00 0.00 0.00 4.01
102 103 5.221009 GGCTATTTGAGAAATCAGAGCCAAG 60.221 44.000 16.68 0.00 38.46 3.61
103 104 4.641989 GGCTATTTGAGAAATCAGAGCCAA 59.358 41.667 16.68 0.00 38.46 4.52
104 105 4.202441 GGCTATTTGAGAAATCAGAGCCA 58.798 43.478 16.68 0.00 38.46 4.75
105 106 4.202441 TGGCTATTTGAGAAATCAGAGCC 58.798 43.478 15.53 15.53 38.99 4.70
106 107 7.502120 TTATGGCTATTTGAGAAATCAGAGC 57.498 36.000 0.00 0.00 32.38 4.09
115 116 8.397906 CGAGTGAAAAATTATGGCTATTTGAGA 58.602 33.333 0.00 0.00 0.00 3.27
116 117 8.184192 ACGAGTGAAAAATTATGGCTATTTGAG 58.816 33.333 0.00 0.00 0.00 3.02
117 118 8.050778 ACGAGTGAAAAATTATGGCTATTTGA 57.949 30.769 0.00 0.00 0.00 2.69
118 119 8.687824 AACGAGTGAAAAATTATGGCTATTTG 57.312 30.769 0.00 0.00 0.00 2.32
122 123 8.617809 GGATAAACGAGTGAAAAATTATGGCTA 58.382 33.333 0.00 0.00 0.00 3.93
123 124 7.122055 TGGATAAACGAGTGAAAAATTATGGCT 59.878 33.333 0.00 0.00 0.00 4.75
124 125 7.254852 TGGATAAACGAGTGAAAAATTATGGC 58.745 34.615 0.00 0.00 0.00 4.40
125 126 9.632807 TTTGGATAAACGAGTGAAAAATTATGG 57.367 29.630 0.00 0.00 0.00 2.74
133 134 9.443323 TCATCTAATTTGGATAAACGAGTGAAA 57.557 29.630 0.00 0.00 0.00 2.69
134 135 9.443323 TTCATCTAATTTGGATAAACGAGTGAA 57.557 29.630 0.00 0.00 0.00 3.18
135 136 9.443323 TTTCATCTAATTTGGATAAACGAGTGA 57.557 29.630 0.00 0.00 0.00 3.41
136 137 9.490663 GTTTCATCTAATTTGGATAAACGAGTG 57.509 33.333 0.00 0.00 0.00 3.51
137 138 9.226606 TGTTTCATCTAATTTGGATAAACGAGT 57.773 29.630 14.94 0.00 0.00 4.18
139 140 9.834628 GTTGTTTCATCTAATTTGGATAAACGA 57.165 29.630 14.94 12.70 0.00 3.85
140 141 9.840427 AGTTGTTTCATCTAATTTGGATAAACG 57.160 29.630 14.94 0.00 0.00 3.60
144 145 9.226606 ACGAAGTTGTTTCATCTAATTTGGATA 57.773 29.630 0.00 0.00 37.78 2.59
145 146 8.110860 ACGAAGTTGTTTCATCTAATTTGGAT 57.889 30.769 0.00 0.00 37.78 3.41
146 147 7.504924 ACGAAGTTGTTTCATCTAATTTGGA 57.495 32.000 0.00 0.00 37.78 3.53
165 166 4.994852 TGGATAGGTGAAAACAAGACGAAG 59.005 41.667 0.00 0.00 0.00 3.79
166 167 4.963373 TGGATAGGTGAAAACAAGACGAA 58.037 39.130 0.00 0.00 0.00 3.85
167 168 4.039973 ACTGGATAGGTGAAAACAAGACGA 59.960 41.667 0.00 0.00 0.00 4.20
168 169 4.152402 CACTGGATAGGTGAAAACAAGACG 59.848 45.833 0.00 0.00 36.89 4.18
169 170 5.305585 TCACTGGATAGGTGAAAACAAGAC 58.694 41.667 0.00 0.00 40.21 3.01
170 171 5.560722 TCACTGGATAGGTGAAAACAAGA 57.439 39.130 0.00 0.00 40.21 3.02
177 178 2.631062 ACACGTTCACTGGATAGGTGAA 59.369 45.455 5.35 5.35 46.95 3.18
178 179 2.230508 GACACGTTCACTGGATAGGTGA 59.769 50.000 0.00 0.00 41.23 4.02
179 180 2.029380 TGACACGTTCACTGGATAGGTG 60.029 50.000 0.00 0.00 36.17 4.00
180 181 2.244695 TGACACGTTCACTGGATAGGT 58.755 47.619 0.00 0.00 0.00 3.08
187 188 9.019097 CAAAAAGTTGATGTGACACGTTCACTG 62.019 40.741 22.50 10.97 45.00 3.66
188 189 7.110043 CAAAAAGTTGATGTGACACGTTCACT 61.110 38.462 22.50 8.28 45.00 3.41
189 190 5.003402 CAAAAAGTTGATGTGACACGTTCAC 59.997 40.000 18.17 18.17 44.99 3.18
190 191 4.955925 AAAAGTTGATGTGACACGTTCA 57.044 36.364 0.94 4.43 0.00 3.18
191 192 5.328691 TCAAAAAGTTGATGTGACACGTTC 58.671 37.500 0.94 1.71 38.88 3.95
192 193 5.303747 TCAAAAAGTTGATGTGACACGTT 57.696 34.783 0.94 0.00 38.88 3.99
193 194 4.955925 TCAAAAAGTTGATGTGACACGT 57.044 36.364 0.00 0.00 38.88 4.49
194 195 6.810888 ATTTCAAAAAGTTGATGTGACACG 57.189 33.333 0.22 0.00 43.29 4.49
195 196 9.476761 GAAAATTTCAAAAAGTTGATGTGACAC 57.523 29.630 0.11 0.00 43.29 3.67
196 197 9.212641 TGAAAATTTCAAAAAGTTGATGTGACA 57.787 25.926 5.87 0.00 43.29 3.58
215 216 9.971744 CTGAACAAAATTCGAAACTTGAAAATT 57.028 25.926 22.38 10.80 0.00 1.82
216 217 9.364989 TCTGAACAAAATTCGAAACTTGAAAAT 57.635 25.926 22.38 10.18 0.00 1.82
217 218 8.749841 TCTGAACAAAATTCGAAACTTGAAAA 57.250 26.923 22.38 10.43 0.00 2.29
218 219 8.925161 ATCTGAACAAAATTCGAAACTTGAAA 57.075 26.923 22.38 10.68 0.00 2.69
219 220 8.925161 AATCTGAACAAAATTCGAAACTTGAA 57.075 26.923 22.38 10.92 0.00 2.69
220 221 8.187480 TGAATCTGAACAAAATTCGAAACTTGA 58.813 29.630 22.38 6.52 33.13 3.02
221 222 8.338985 TGAATCTGAACAAAATTCGAAACTTG 57.661 30.769 16.74 16.74 33.13 3.16
251 252 9.573133 ACTCAAGTTATGTTCAAAAGAAGTTTG 57.427 29.630 0.00 0.00 46.86 2.93
254 255 9.788960 GAAACTCAAGTTATGTTCAAAAGAAGT 57.211 29.630 0.00 0.00 37.25 3.01
255 256 8.947940 CGAAACTCAAGTTATGTTCAAAAGAAG 58.052 33.333 0.00 0.00 37.25 2.85
256 257 8.455682 ACGAAACTCAAGTTATGTTCAAAAGAA 58.544 29.630 0.00 0.00 37.25 2.52
257 258 7.981142 ACGAAACTCAAGTTATGTTCAAAAGA 58.019 30.769 0.00 0.00 37.25 2.52
258 259 9.710979 TTACGAAACTCAAGTTATGTTCAAAAG 57.289 29.630 0.00 0.00 37.25 2.27
259 260 9.493206 GTTACGAAACTCAAGTTATGTTCAAAA 57.507 29.630 0.00 0.00 37.25 2.44
260 261 8.885722 AGTTACGAAACTCAAGTTATGTTCAAA 58.114 29.630 0.00 0.00 42.42 2.69
261 262 8.428186 AGTTACGAAACTCAAGTTATGTTCAA 57.572 30.769 0.00 0.00 42.42 2.69
276 277 6.695292 TCAACTAAATCGGAGTTACGAAAC 57.305 37.500 0.00 0.00 46.92 2.78
277 278 7.816031 AGAATCAACTAAATCGGAGTTACGAAA 59.184 33.333 0.00 0.00 46.92 3.46
278 279 7.318141 AGAATCAACTAAATCGGAGTTACGAA 58.682 34.615 0.00 0.00 46.92 3.85
280 281 7.521509 AAGAATCAACTAAATCGGAGTTACG 57.478 36.000 0.00 0.00 35.36 3.18
283 284 7.595130 GCAAAAAGAATCAACTAAATCGGAGTT 59.405 33.333 0.00 0.00 37.64 3.01
284 285 7.084486 GCAAAAAGAATCAACTAAATCGGAGT 58.916 34.615 0.00 0.00 0.00 3.85
285 286 7.083858 TGCAAAAAGAATCAACTAAATCGGAG 58.916 34.615 0.00 0.00 0.00 4.63
286 287 6.976088 TGCAAAAAGAATCAACTAAATCGGA 58.024 32.000 0.00 0.00 0.00 4.55
287 288 7.636259 TTGCAAAAAGAATCAACTAAATCGG 57.364 32.000 0.00 0.00 0.00 4.18
288 289 9.731519 GATTTGCAAAAAGAATCAACTAAATCG 57.268 29.630 17.19 0.00 31.69 3.34
289 290 9.731519 CGATTTGCAAAAAGAATCAACTAAATC 57.268 29.630 17.19 2.23 31.69 2.17
290 291 9.474920 TCGATTTGCAAAAAGAATCAACTAAAT 57.525 25.926 17.19 0.00 31.69 1.40
291 292 8.864069 TCGATTTGCAAAAAGAATCAACTAAA 57.136 26.923 17.19 0.00 31.69 1.85
292 293 8.864069 TTCGATTTGCAAAAAGAATCAACTAA 57.136 26.923 17.19 0.00 31.69 2.24
293 294 7.114811 GCTTCGATTTGCAAAAAGAATCAACTA 59.885 33.333 23.70 8.40 31.69 2.24
294 295 6.074142 GCTTCGATTTGCAAAAAGAATCAACT 60.074 34.615 23.70 4.19 31.69 3.16
295 296 6.067039 GCTTCGATTTGCAAAAAGAATCAAC 58.933 36.000 23.70 14.53 31.69 3.18
296 297 5.984926 AGCTTCGATTTGCAAAAAGAATCAA 59.015 32.000 23.70 11.17 31.69 2.57
297 298 5.531634 AGCTTCGATTTGCAAAAAGAATCA 58.468 33.333 23.70 9.97 31.69 2.57
298 299 5.860716 AGAGCTTCGATTTGCAAAAAGAATC 59.139 36.000 23.70 20.84 0.00 2.52
299 300 5.776744 AGAGCTTCGATTTGCAAAAAGAAT 58.223 33.333 23.70 15.09 0.00 2.40
300 301 5.186996 AGAGCTTCGATTTGCAAAAAGAA 57.813 34.783 20.95 21.90 0.00 2.52
301 302 4.836125 AGAGCTTCGATTTGCAAAAAGA 57.164 36.364 20.95 17.41 0.00 2.52
302 303 4.977963 TCAAGAGCTTCGATTTGCAAAAAG 59.022 37.500 17.19 15.82 0.00 2.27
303 304 4.739716 GTCAAGAGCTTCGATTTGCAAAAA 59.260 37.500 17.19 5.27 0.00 1.94
304 305 4.290155 GTCAAGAGCTTCGATTTGCAAAA 58.710 39.130 17.19 0.00 0.00 2.44
305 306 3.304659 GGTCAAGAGCTTCGATTTGCAAA 60.305 43.478 15.44 15.44 0.00 3.68
306 307 2.226437 GGTCAAGAGCTTCGATTTGCAA 59.774 45.455 0.00 0.00 0.00 4.08
307 308 1.806542 GGTCAAGAGCTTCGATTTGCA 59.193 47.619 8.00 0.00 0.00 4.08
308 309 2.079925 AGGTCAAGAGCTTCGATTTGC 58.920 47.619 0.00 0.00 35.28 3.68
309 310 5.409826 AGTTTAGGTCAAGAGCTTCGATTTG 59.590 40.000 7.13 0.00 40.09 2.32
310 311 5.552178 AGTTTAGGTCAAGAGCTTCGATTT 58.448 37.500 7.13 0.00 40.09 2.17
311 312 5.153950 AGTTTAGGTCAAGAGCTTCGATT 57.846 39.130 7.13 0.00 40.09 3.34
312 313 4.810191 AGTTTAGGTCAAGAGCTTCGAT 57.190 40.909 7.13 0.00 40.09 3.59
313 314 4.602340 AAGTTTAGGTCAAGAGCTTCGA 57.398 40.909 7.13 0.00 40.09 3.71
314 315 4.991687 AGAAAGTTTAGGTCAAGAGCTTCG 59.008 41.667 7.13 0.00 40.09 3.79
315 316 5.992217 TCAGAAAGTTTAGGTCAAGAGCTTC 59.008 40.000 7.13 0.00 40.09 3.86
316 317 5.930135 TCAGAAAGTTTAGGTCAAGAGCTT 58.070 37.500 7.13 0.00 40.09 3.74
317 318 5.552870 TCAGAAAGTTTAGGTCAAGAGCT 57.447 39.130 7.01 7.01 42.47 4.09
318 319 7.065204 CCTTATCAGAAAGTTTAGGTCAAGAGC 59.935 40.741 0.00 0.00 0.00 4.09
319 320 7.065204 GCCTTATCAGAAAGTTTAGGTCAAGAG 59.935 40.741 2.60 0.00 0.00 2.85
320 321 6.879458 GCCTTATCAGAAAGTTTAGGTCAAGA 59.121 38.462 2.60 0.00 0.00 3.02
321 322 6.094186 GGCCTTATCAGAAAGTTTAGGTCAAG 59.906 42.308 0.00 0.00 0.00 3.02
322 323 5.944007 GGCCTTATCAGAAAGTTTAGGTCAA 59.056 40.000 0.00 0.00 0.00 3.18
323 324 5.013704 TGGCCTTATCAGAAAGTTTAGGTCA 59.986 40.000 3.32 3.52 33.84 4.02
324 325 5.497474 TGGCCTTATCAGAAAGTTTAGGTC 58.503 41.667 3.32 0.00 0.00 3.85
325 326 5.514500 TGGCCTTATCAGAAAGTTTAGGT 57.486 39.130 3.32 0.00 0.00 3.08
326 327 6.834168 TTTGGCCTTATCAGAAAGTTTAGG 57.166 37.500 3.32 0.00 0.00 2.69
327 328 8.522830 TGAATTTGGCCTTATCAGAAAGTTTAG 58.477 33.333 3.32 0.00 0.00 1.85
328 329 8.303876 GTGAATTTGGCCTTATCAGAAAGTTTA 58.696 33.333 3.32 0.00 0.00 2.01
329 330 7.154656 GTGAATTTGGCCTTATCAGAAAGTTT 58.845 34.615 3.32 0.00 0.00 2.66
330 331 6.267471 TGTGAATTTGGCCTTATCAGAAAGTT 59.733 34.615 3.32 0.00 0.00 2.66
331 332 5.774690 TGTGAATTTGGCCTTATCAGAAAGT 59.225 36.000 3.32 0.00 0.00 2.66
332 333 6.271488 TGTGAATTTGGCCTTATCAGAAAG 57.729 37.500 3.32 0.00 0.00 2.62
333 334 6.855763 ATGTGAATTTGGCCTTATCAGAAA 57.144 33.333 3.32 0.00 0.00 2.52
334 335 7.953005 TTATGTGAATTTGGCCTTATCAGAA 57.047 32.000 3.32 0.00 0.00 3.02
335 336 8.537728 AATTATGTGAATTTGGCCTTATCAGA 57.462 30.769 3.32 2.42 0.00 3.27
336 337 9.603921 AAAATTATGTGAATTTGGCCTTATCAG 57.396 29.630 3.32 0.00 30.94 2.90
337 338 9.381033 CAAAATTATGTGAATTTGGCCTTATCA 57.619 29.630 3.32 0.14 30.94 2.15
338 339 8.829612 CCAAAATTATGTGAATTTGGCCTTATC 58.170 33.333 3.32 0.00 43.60 1.75
339 340 8.735692 CCAAAATTATGTGAATTTGGCCTTAT 57.264 30.769 3.32 0.00 43.60 1.73
390 391 9.260002 ACATCAAAACCTAGCAAATAACTTTTG 57.740 29.630 0.00 0.00 0.00 2.44
391 392 9.830975 AACATCAAAACCTAGCAAATAACTTTT 57.169 25.926 0.00 0.00 0.00 2.27
392 393 9.830975 AAACATCAAAACCTAGCAAATAACTTT 57.169 25.926 0.00 0.00 0.00 2.66
393 394 9.830975 AAAACATCAAAACCTAGCAAATAACTT 57.169 25.926 0.00 0.00 0.00 2.66
394 395 9.476202 GAAAACATCAAAACCTAGCAAATAACT 57.524 29.630 0.00 0.00 0.00 2.24
395 396 8.708742 GGAAAACATCAAAACCTAGCAAATAAC 58.291 33.333 0.00 0.00 0.00 1.89
396 397 7.596995 CGGAAAACATCAAAACCTAGCAAATAA 59.403 33.333 0.00 0.00 0.00 1.40
397 398 7.040340 TCGGAAAACATCAAAACCTAGCAAATA 60.040 33.333 0.00 0.00 0.00 1.40
398 399 5.925969 CGGAAAACATCAAAACCTAGCAAAT 59.074 36.000 0.00 0.00 0.00 2.32
399 400 5.067936 TCGGAAAACATCAAAACCTAGCAAA 59.932 36.000 0.00 0.00 0.00 3.68
400 401 4.580995 TCGGAAAACATCAAAACCTAGCAA 59.419 37.500 0.00 0.00 0.00 3.91
401 402 4.138290 TCGGAAAACATCAAAACCTAGCA 58.862 39.130 0.00 0.00 0.00 3.49
402 403 4.759516 TCGGAAAACATCAAAACCTAGC 57.240 40.909 0.00 0.00 0.00 3.42
403 404 6.142817 CAGTTCGGAAAACATCAAAACCTAG 58.857 40.000 0.00 0.00 0.00 3.02
404 405 5.591067 ACAGTTCGGAAAACATCAAAACCTA 59.409 36.000 0.00 0.00 0.00 3.08
405 406 4.401202 ACAGTTCGGAAAACATCAAAACCT 59.599 37.500 0.00 0.00 0.00 3.50
406 407 4.678622 ACAGTTCGGAAAACATCAAAACC 58.321 39.130 0.00 0.00 0.00 3.27
407 408 5.578776 AGACAGTTCGGAAAACATCAAAAC 58.421 37.500 0.00 0.00 0.00 2.43
408 409 5.828299 AGACAGTTCGGAAAACATCAAAA 57.172 34.783 0.00 0.00 0.00 2.44
409 410 5.588648 AGAAGACAGTTCGGAAAACATCAAA 59.411 36.000 0.00 0.00 0.00 2.69
410 411 5.123227 AGAAGACAGTTCGGAAAACATCAA 58.877 37.500 0.00 0.00 0.00 2.57
411 412 4.703897 AGAAGACAGTTCGGAAAACATCA 58.296 39.130 0.00 0.00 0.00 3.07
412 413 5.612709 CGAAGAAGACAGTTCGGAAAACATC 60.613 44.000 0.00 0.00 41.47 3.06
413 414 4.211374 CGAAGAAGACAGTTCGGAAAACAT 59.789 41.667 0.00 0.00 41.47 2.71
414 415 3.554324 CGAAGAAGACAGTTCGGAAAACA 59.446 43.478 0.00 0.00 41.47 2.83
415 416 4.116713 CGAAGAAGACAGTTCGGAAAAC 57.883 45.455 0.00 0.00 41.47 2.43
422 423 3.741856 GGGAAGAACGAAGAAGACAGTTC 59.258 47.826 0.00 0.00 42.17 3.01
423 424 3.729966 GGGAAGAACGAAGAAGACAGTT 58.270 45.455 0.00 0.00 0.00 3.16
424 425 2.288273 CGGGAAGAACGAAGAAGACAGT 60.288 50.000 0.00 0.00 0.00 3.55
425 426 2.030185 TCGGGAAGAACGAAGAAGACAG 60.030 50.000 0.00 0.00 37.42 3.51
426 427 1.958579 TCGGGAAGAACGAAGAAGACA 59.041 47.619 0.00 0.00 37.42 3.41
427 428 2.719426 TCGGGAAGAACGAAGAAGAC 57.281 50.000 0.00 0.00 37.42 3.01
428 429 3.090037 AGATCGGGAAGAACGAAGAAGA 58.910 45.455 0.00 0.00 44.20 2.87
429 430 3.512033 AGATCGGGAAGAACGAAGAAG 57.488 47.619 0.00 0.00 44.20 2.85
430 431 3.510360 AGAAGATCGGGAAGAACGAAGAA 59.490 43.478 0.00 0.00 44.20 2.52
431 432 3.090037 AGAAGATCGGGAAGAACGAAGA 58.910 45.455 0.00 0.00 44.20 2.87
432 433 3.119459 TCAGAAGATCGGGAAGAACGAAG 60.119 47.826 0.00 0.00 44.20 3.79
433 434 2.823747 TCAGAAGATCGGGAAGAACGAA 59.176 45.455 0.00 0.00 44.20 3.85
434 435 2.163815 GTCAGAAGATCGGGAAGAACGA 59.836 50.000 0.00 0.00 45.19 3.85
435 436 2.094700 TGTCAGAAGATCGGGAAGAACG 60.095 50.000 0.00 0.00 0.00 3.95
436 437 3.056465 AGTGTCAGAAGATCGGGAAGAAC 60.056 47.826 0.00 0.00 0.00 3.01
437 438 3.165875 AGTGTCAGAAGATCGGGAAGAA 58.834 45.455 0.00 0.00 0.00 2.52
438 439 2.808919 AGTGTCAGAAGATCGGGAAGA 58.191 47.619 0.00 0.00 0.00 2.87
439 440 3.444034 TGTAGTGTCAGAAGATCGGGAAG 59.556 47.826 0.00 0.00 0.00 3.46
440 441 3.192844 GTGTAGTGTCAGAAGATCGGGAA 59.807 47.826 0.00 0.00 0.00 3.97
441 442 2.753452 GTGTAGTGTCAGAAGATCGGGA 59.247 50.000 0.00 0.00 0.00 5.14
442 443 2.159226 GGTGTAGTGTCAGAAGATCGGG 60.159 54.545 0.00 0.00 0.00 5.14
443 444 2.492088 TGGTGTAGTGTCAGAAGATCGG 59.508 50.000 0.00 0.00 0.00 4.18
444 445 3.502920 GTGGTGTAGTGTCAGAAGATCG 58.497 50.000 0.00 0.00 0.00 3.69
445 446 3.190744 TCGTGGTGTAGTGTCAGAAGATC 59.809 47.826 0.00 0.00 0.00 2.75
446 447 3.057456 GTCGTGGTGTAGTGTCAGAAGAT 60.057 47.826 0.00 0.00 0.00 2.40
447 448 2.292569 GTCGTGGTGTAGTGTCAGAAGA 59.707 50.000 0.00 0.00 0.00 2.87
448 449 2.034179 TGTCGTGGTGTAGTGTCAGAAG 59.966 50.000 0.00 0.00 0.00 2.85
449 450 2.025898 TGTCGTGGTGTAGTGTCAGAA 58.974 47.619 0.00 0.00 0.00 3.02
450 451 1.335810 GTGTCGTGGTGTAGTGTCAGA 59.664 52.381 0.00 0.00 0.00 3.27
451 452 1.337071 AGTGTCGTGGTGTAGTGTCAG 59.663 52.381 0.00 0.00 0.00 3.51
452 453 1.395635 AGTGTCGTGGTGTAGTGTCA 58.604 50.000 0.00 0.00 0.00 3.58
519 520 9.967451 TCTATTACAACATTTCCCAATCAACTA 57.033 29.630 0.00 0.00 0.00 2.24
542 543 5.586155 TGGTTTTCCCAACCAACTATCTA 57.414 39.130 3.90 0.00 46.44 1.98
584 585 1.646912 TGTTCAGGTATTCCCGTCCA 58.353 50.000 0.00 0.00 38.74 4.02
598 599 5.561919 GCCACAGTTCGACATTAAATGTTCA 60.562 40.000 0.00 0.00 45.03 3.18
622 623 1.398390 GTGTATGCGAGCTTTCCCAAG 59.602 52.381 0.00 0.00 0.00 3.61
924 947 4.309950 GTTCGAGCACGTGGGGGT 62.310 66.667 18.88 0.00 40.69 4.95
948 971 2.430610 GGAGAGCACCGAGGCAGAT 61.431 63.158 1.23 0.00 35.83 2.90
955 978 2.680352 GTCAGGGGAGAGCACCGA 60.680 66.667 0.00 0.00 44.66 4.69
1167 1191 2.087248 CCTGGAACCCAACCCTGAT 58.913 57.895 0.00 0.00 30.80 2.90
1192 1216 0.745845 CCTGGAGGAGCAAATGACGG 60.746 60.000 0.00 0.00 37.39 4.79
1257 1299 5.269991 TCCAGTCTAGTAAGTTACCTGCAT 58.730 41.667 9.46 0.00 0.00 3.96
1493 1539 9.500785 TGATGCTTAATGATATTCAACGGAATA 57.499 29.630 0.16 0.16 46.88 1.75
1494 1540 8.394971 TGATGCTTAATGATATTCAACGGAAT 57.605 30.769 0.00 0.00 45.50 3.01
1640 1687 4.077108 TCAGTTCAGAGAAAGCATGCATT 58.923 39.130 21.98 15.23 0.00 3.56
1803 1851 3.915437 AAATGGAACCAAGCAAGTACG 57.085 42.857 0.00 0.00 0.00 3.67
1849 2056 4.282068 CGCATAACAATGGTAGCATGTTC 58.718 43.478 19.14 9.73 38.22 3.18
1926 2133 5.955488 TCAGCACTAACTATGTCTGAAGAC 58.045 41.667 3.41 3.41 44.97 3.01
2035 2242 6.038603 TCAATCAAATAGCAACTAGTGATGGC 59.961 38.462 0.00 0.00 30.30 4.40
2147 2354 7.015877 AGTCTATTGTGTTGTAGGTTTCCACTA 59.984 37.037 0.00 0.00 0.00 2.74
2386 2594 5.123027 GCCTTTGTTTTCAAATGTTGGTTGA 59.877 36.000 0.00 0.00 46.72 3.18
2812 3874 3.825908 ACATGGGTAACATTTGGTCCT 57.174 42.857 0.00 0.00 37.84 3.85
2906 3968 6.660887 AAAACATTGCGACAAAGATTTTGT 57.339 29.167 6.88 6.88 34.97 2.83
2951 4013 4.999950 ACTTTCAAGCAGTATTGTCTCTGG 59.000 41.667 0.00 0.00 32.94 3.86
3509 8830 5.344743 TCTCTGGATCGTATTTCTTGCTT 57.655 39.130 0.00 0.00 0.00 3.91
3815 11016 5.319453 AGTGCTCATCTCCAAGAAAATGAA 58.681 37.500 0.00 0.00 0.00 2.57
3895 11103 1.625315 TCACTGCCTACTGTGAGCATT 59.375 47.619 6.97 0.02 46.20 3.56
3953 11162 4.467438 TGAGGCAGAGTTGATGATGTTCTA 59.533 41.667 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.