Multiple sequence alignment - TraesCS5A01G078800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G078800 chr5A 100.000 3489 0 0 1 3489 97560574 97564062 0.000000e+00 6444.0
1 TraesCS5A01G078800 chr5A 86.296 270 36 1 90 358 566649443 566649174 3.410000e-75 292.0
2 TraesCS5A01G078800 chr5D 93.882 2419 89 26 349 2745 102273748 102276129 0.000000e+00 3592.0
3 TraesCS5A01G078800 chr5D 94.452 757 34 5 2732 3487 102276148 102276897 0.000000e+00 1158.0
4 TraesCS5A01G078800 chr5B 91.379 2459 117 43 1053 3486 111679203 111681591 0.000000e+00 3278.0
5 TraesCS5A01G078800 chr5B 92.160 727 49 7 331 1052 111677174 111677897 0.000000e+00 1020.0
6 TraesCS5A01G078800 chr2D 92.500 400 24 4 3035 3431 610858375 610857979 5.050000e-158 568.0
7 TraesCS5A01G078800 chr2D 75.000 388 66 19 1 359 649834830 649835215 2.170000e-32 150.0
8 TraesCS5A01G078800 chr1D 85.879 347 49 0 12 358 439140591 439140937 1.530000e-98 370.0
9 TraesCS5A01G078800 chr3D 87.261 314 36 4 48 359 173482229 173482540 4.280000e-94 355.0
10 TraesCS5A01G078800 chr3D 86.076 316 37 7 5 314 7961410 7961724 2.010000e-87 333.0
11 TraesCS5A01G078800 chr7D 87.823 271 33 0 89 359 339238534 339238804 5.620000e-83 318.0
12 TraesCS5A01G078800 chr7D 82.903 310 47 5 54 358 47056626 47056318 1.230000e-69 274.0
13 TraesCS5A01G078800 chr2B 84.142 309 44 4 54 359 566406716 566406410 9.470000e-76 294.0
14 TraesCS5A01G078800 chr4A 81.266 379 49 11 1 359 707059202 707059578 1.580000e-73 287.0
15 TraesCS5A01G078800 chr6A 84.615 273 40 1 89 359 616746179 616745907 1.600000e-68 270.0
16 TraesCS5A01G078800 chr6D 81.933 238 42 1 122 358 339386518 339386281 2.120000e-47 200.0
17 TraesCS5A01G078800 chr3A 88.742 151 17 0 1 151 621593287 621593137 5.950000e-43 185.0
18 TraesCS5A01G078800 chr3B 91.509 106 9 0 1 106 580807874 580807979 2.810000e-31 147.0
19 TraesCS5A01G078800 chr6B 89.474 57 6 0 7 63 288578970 288578914 4.830000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G078800 chr5A 97560574 97564062 3488 False 6444 6444 100.0000 1 3489 1 chr5A.!!$F1 3488
1 TraesCS5A01G078800 chr5D 102273748 102276897 3149 False 2375 3592 94.1670 349 3487 2 chr5D.!!$F1 3138
2 TraesCS5A01G078800 chr5B 111677174 111681591 4417 False 2149 3278 91.7695 331 3486 2 chr5B.!!$F1 3155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.035439 GAAAATGGAGGCGGACAGGA 60.035 55.0 0.0 0.0 0.00 3.86 F
223 224 0.036388 GCGGACAGGATGAGACCAAA 60.036 55.0 0.0 0.0 39.69 3.28 F
299 300 0.040499 GACCCCATTGCCCTACCAAA 59.960 55.0 0.0 0.0 0.00 3.28 F
1220 2540 0.106894 GCATAAACCTCTCCCTCCCG 59.893 60.0 0.0 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 3491 0.108329 CGCCGGTGGACTAATCAACT 60.108 55.000 7.26 0.0 0.00 3.16 R
2175 3508 0.883814 CATCTCCAGAGGCCAATCGC 60.884 60.000 5.01 0.0 0.00 4.58 R
2281 3614 2.097825 GCCAGCATGAAGAATCAAGGT 58.902 47.619 0.00 0.0 39.69 3.50 R
2860 4248 1.347707 TGTCGATGGTGAAGGAAGCTT 59.652 47.619 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.355837 GCTGTGTGCCGACGAGAA 60.356 61.111 0.00 0.00 35.15 2.87
30 31 1.954146 GCTGTGTGCCGACGAGAAA 60.954 57.895 0.00 0.00 35.15 2.52
31 32 1.853319 CTGTGTGCCGACGAGAAAC 59.147 57.895 0.00 0.00 0.00 2.78
32 33 0.874175 CTGTGTGCCGACGAGAAACA 60.874 55.000 0.00 0.00 0.00 2.83
33 34 1.149361 TGTGTGCCGACGAGAAACAC 61.149 55.000 0.00 5.94 41.15 3.32
34 35 1.142097 TGTGCCGACGAGAAACACA 59.858 52.632 0.00 0.00 38.83 3.72
35 36 0.249699 TGTGCCGACGAGAAACACAT 60.250 50.000 0.00 0.00 36.39 3.21
36 37 0.865769 GTGCCGACGAGAAACACATT 59.134 50.000 0.00 0.00 0.00 2.71
37 38 1.136336 GTGCCGACGAGAAACACATTC 60.136 52.381 0.00 0.00 38.39 2.67
38 39 1.144969 GCCGACGAGAAACACATTCA 58.855 50.000 0.00 0.00 40.72 2.57
39 40 1.732259 GCCGACGAGAAACACATTCAT 59.268 47.619 0.00 0.00 40.72 2.57
40 41 2.159627 GCCGACGAGAAACACATTCATT 59.840 45.455 0.00 0.00 40.72 2.57
41 42 3.364964 GCCGACGAGAAACACATTCATTT 60.365 43.478 0.00 0.00 40.72 2.32
42 43 4.783242 CCGACGAGAAACACATTCATTTT 58.217 39.130 0.00 0.00 40.72 1.82
43 44 4.612614 CCGACGAGAAACACATTCATTTTG 59.387 41.667 0.00 0.00 40.72 2.44
44 45 4.612614 CGACGAGAAACACATTCATTTTGG 59.387 41.667 0.00 0.00 40.72 3.28
45 46 5.559991 CGACGAGAAACACATTCATTTTGGA 60.560 40.000 0.00 0.00 40.72 3.53
46 47 5.762045 ACGAGAAACACATTCATTTTGGAG 58.238 37.500 0.00 0.00 40.72 3.86
47 48 5.156355 CGAGAAACACATTCATTTTGGAGG 58.844 41.667 0.00 0.00 40.72 4.30
48 49 4.886579 AGAAACACATTCATTTTGGAGGC 58.113 39.130 0.00 0.00 40.72 4.70
49 50 4.590222 AGAAACACATTCATTTTGGAGGCT 59.410 37.500 0.00 0.00 40.72 4.58
50 51 5.774690 AGAAACACATTCATTTTGGAGGCTA 59.225 36.000 0.00 0.00 40.72 3.93
51 52 5.649782 AACACATTCATTTTGGAGGCTAG 57.350 39.130 0.00 0.00 0.00 3.42
52 53 4.666512 ACACATTCATTTTGGAGGCTAGT 58.333 39.130 0.00 0.00 0.00 2.57
53 54 5.079643 ACACATTCATTTTGGAGGCTAGTT 58.920 37.500 0.00 0.00 0.00 2.24
54 55 5.047802 ACACATTCATTTTGGAGGCTAGTTG 60.048 40.000 0.00 0.00 0.00 3.16
55 56 5.047802 CACATTCATTTTGGAGGCTAGTTGT 60.048 40.000 0.00 0.00 0.00 3.32
56 57 5.539955 ACATTCATTTTGGAGGCTAGTTGTT 59.460 36.000 0.00 0.00 0.00 2.83
57 58 6.041979 ACATTCATTTTGGAGGCTAGTTGTTT 59.958 34.615 0.00 0.00 0.00 2.83
58 59 6.478512 TTCATTTTGGAGGCTAGTTGTTTT 57.521 33.333 0.00 0.00 0.00 2.43
59 60 5.841810 TCATTTTGGAGGCTAGTTGTTTTG 58.158 37.500 0.00 0.00 0.00 2.44
60 61 5.362430 TCATTTTGGAGGCTAGTTGTTTTGT 59.638 36.000 0.00 0.00 0.00 2.83
61 62 4.911514 TTTGGAGGCTAGTTGTTTTGTC 57.088 40.909 0.00 0.00 0.00 3.18
62 63 2.489971 TGGAGGCTAGTTGTTTTGTCG 58.510 47.619 0.00 0.00 0.00 4.35
63 64 1.804748 GGAGGCTAGTTGTTTTGTCGG 59.195 52.381 0.00 0.00 0.00 4.79
64 65 1.197036 GAGGCTAGTTGTTTTGTCGGC 59.803 52.381 0.00 0.00 0.00 5.54
65 66 0.110373 GGCTAGTTGTTTTGTCGGCG 60.110 55.000 0.00 0.00 0.00 6.46
66 67 0.863144 GCTAGTTGTTTTGTCGGCGA 59.137 50.000 4.99 4.99 0.00 5.54
67 68 1.262151 GCTAGTTGTTTTGTCGGCGAA 59.738 47.619 12.92 0.00 0.00 4.70
68 69 2.899977 CTAGTTGTTTTGTCGGCGAAC 58.100 47.619 12.92 6.87 0.00 3.95
69 70 1.088306 AGTTGTTTTGTCGGCGAACA 58.912 45.000 12.92 9.98 0.00 3.18
70 71 1.469308 AGTTGTTTTGTCGGCGAACAA 59.531 42.857 17.96 17.96 39.99 2.83
71 72 2.095161 AGTTGTTTTGTCGGCGAACAAA 60.095 40.909 22.04 22.96 44.98 2.83
77 78 4.555348 TTTGTCGGCGAACAAAACTATT 57.445 36.364 24.63 0.00 44.02 1.73
78 79 3.799137 TGTCGGCGAACAAAACTATTC 57.201 42.857 12.92 0.00 0.00 1.75
79 80 3.132160 TGTCGGCGAACAAAACTATTCA 58.868 40.909 12.92 0.00 0.00 2.57
80 81 3.749088 TGTCGGCGAACAAAACTATTCAT 59.251 39.130 12.92 0.00 0.00 2.57
81 82 4.214545 TGTCGGCGAACAAAACTATTCATT 59.785 37.500 12.92 0.00 0.00 2.57
82 83 5.151389 GTCGGCGAACAAAACTATTCATTT 58.849 37.500 12.92 0.00 0.00 2.32
83 84 5.627780 GTCGGCGAACAAAACTATTCATTTT 59.372 36.000 12.92 0.00 0.00 1.82
84 85 6.797995 GTCGGCGAACAAAACTATTCATTTTA 59.202 34.615 12.92 0.00 0.00 1.52
85 86 7.324135 GTCGGCGAACAAAACTATTCATTTTAA 59.676 33.333 12.92 0.00 0.00 1.52
86 87 7.861372 TCGGCGAACAAAACTATTCATTTTAAA 59.139 29.630 7.35 0.00 0.00 1.52
87 88 8.153411 CGGCGAACAAAACTATTCATTTTAAAG 58.847 33.333 0.00 0.00 0.00 1.85
88 89 8.432359 GGCGAACAAAACTATTCATTTTAAAGG 58.568 33.333 0.00 0.00 0.00 3.11
89 90 7.949962 GCGAACAAAACTATTCATTTTAAAGGC 59.050 33.333 0.00 0.00 0.00 4.35
90 91 9.191995 CGAACAAAACTATTCATTTTAAAGGCT 57.808 29.630 0.00 0.00 0.00 4.58
92 93 8.831715 ACAAAACTATTCATTTTAAAGGCTGG 57.168 30.769 0.00 0.00 0.00 4.85
93 94 8.428852 ACAAAACTATTCATTTTAAAGGCTGGT 58.571 29.630 0.00 0.00 0.00 4.00
94 95 9.271828 CAAAACTATTCATTTTAAAGGCTGGTT 57.728 29.630 0.00 0.00 0.00 3.67
95 96 8.831715 AAACTATTCATTTTAAAGGCTGGTTG 57.168 30.769 0.00 0.00 0.00 3.77
96 97 7.539034 ACTATTCATTTTAAAGGCTGGTTGT 57.461 32.000 0.00 0.00 0.00 3.32
97 98 7.378181 ACTATTCATTTTAAAGGCTGGTTGTG 58.622 34.615 0.00 0.00 0.00 3.33
98 99 5.606348 TTCATTTTAAAGGCTGGTTGTGT 57.394 34.783 0.00 0.00 0.00 3.72
99 100 5.606348 TCATTTTAAAGGCTGGTTGTGTT 57.394 34.783 0.00 0.00 0.00 3.32
100 101 5.355596 TCATTTTAAAGGCTGGTTGTGTTG 58.644 37.500 0.00 0.00 0.00 3.33
101 102 2.880963 TTAAAGGCTGGTTGTGTTGC 57.119 45.000 0.00 0.00 0.00 4.17
102 103 1.036707 TAAAGGCTGGTTGTGTTGCC 58.963 50.000 0.00 0.00 45.21 4.52
104 105 3.977244 GGCTGGTTGTGTTGCCGG 61.977 66.667 0.00 0.00 35.79 6.13
106 107 4.326766 CTGGTTGTGTTGCCGGCG 62.327 66.667 23.90 0.00 0.00 6.46
107 108 4.858680 TGGTTGTGTTGCCGGCGA 62.859 61.111 23.90 19.26 0.00 5.54
108 109 4.025401 GGTTGTGTTGCCGGCGAG 62.025 66.667 23.90 0.00 0.00 5.03
109 110 4.025401 GTTGTGTTGCCGGCGAGG 62.025 66.667 23.90 0.00 44.97 4.63
110 111 4.243008 TTGTGTTGCCGGCGAGGA 62.243 61.111 23.90 6.59 45.00 3.71
111 112 3.545124 TTGTGTTGCCGGCGAGGAT 62.545 57.895 23.90 0.00 45.00 3.24
112 113 3.499737 GTGTTGCCGGCGAGGATG 61.500 66.667 23.90 0.00 45.00 3.51
113 114 4.015406 TGTTGCCGGCGAGGATGT 62.015 61.111 23.90 0.00 45.00 3.06
114 115 3.499737 GTTGCCGGCGAGGATGTG 61.500 66.667 23.90 0.00 45.00 3.21
115 116 4.015406 TTGCCGGCGAGGATGTGT 62.015 61.111 23.90 0.00 45.00 3.72
116 117 2.651105 TTGCCGGCGAGGATGTGTA 61.651 57.895 23.90 0.00 45.00 2.90
117 118 2.279517 GCCGGCGAGGATGTGTAG 60.280 66.667 12.58 0.00 45.00 2.74
118 119 2.417516 CCGGCGAGGATGTGTAGG 59.582 66.667 9.30 0.00 45.00 3.18
119 120 2.279517 CGGCGAGGATGTGTAGGC 60.280 66.667 0.00 0.00 0.00 3.93
120 121 2.109181 GGCGAGGATGTGTAGGCC 59.891 66.667 0.00 0.00 0.00 5.19
121 122 2.279517 GCGAGGATGTGTAGGCCG 60.280 66.667 0.00 0.00 0.00 6.13
122 123 2.279517 CGAGGATGTGTAGGCCGC 60.280 66.667 0.00 0.00 0.00 6.53
123 124 2.786495 CGAGGATGTGTAGGCCGCT 61.786 63.158 0.00 0.00 0.00 5.52
124 125 1.227380 GAGGATGTGTAGGCCGCTG 60.227 63.158 0.00 0.00 0.00 5.18
125 126 2.203070 GGATGTGTAGGCCGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
136 137 3.429141 CCGCTGGCTCTGTTGCTG 61.429 66.667 0.00 0.00 0.00 4.41
137 138 3.429141 CGCTGGCTCTGTTGCTGG 61.429 66.667 0.00 0.00 0.00 4.85
138 139 3.745803 GCTGGCTCTGTTGCTGGC 61.746 66.667 0.00 0.00 0.00 4.85
139 140 3.429141 CTGGCTCTGTTGCTGGCG 61.429 66.667 0.00 0.00 0.00 5.69
140 141 4.254709 TGGCTCTGTTGCTGGCGT 62.255 61.111 0.00 0.00 0.00 5.68
141 142 3.730761 GGCTCTGTTGCTGGCGTG 61.731 66.667 0.00 0.00 0.00 5.34
142 143 2.666190 GCTCTGTTGCTGGCGTGA 60.666 61.111 0.00 0.00 0.00 4.35
143 144 2.253758 GCTCTGTTGCTGGCGTGAA 61.254 57.895 0.00 0.00 0.00 3.18
144 145 1.571460 CTCTGTTGCTGGCGTGAAC 59.429 57.895 0.00 0.00 0.00 3.18
145 146 0.882042 CTCTGTTGCTGGCGTGAACT 60.882 55.000 0.00 0.00 0.00 3.01
146 147 0.391228 TCTGTTGCTGGCGTGAACTA 59.609 50.000 0.00 0.00 0.00 2.24
147 148 0.792640 CTGTTGCTGGCGTGAACTAG 59.207 55.000 0.00 0.00 0.00 2.57
148 149 0.602638 TGTTGCTGGCGTGAACTAGG 60.603 55.000 0.00 0.00 0.00 3.02
149 150 1.003839 TTGCTGGCGTGAACTAGGG 60.004 57.895 0.00 0.00 0.00 3.53
150 151 2.820037 GCTGGCGTGAACTAGGGC 60.820 66.667 0.00 0.00 39.87 5.19
151 152 2.125106 CTGGCGTGAACTAGGGCC 60.125 66.667 0.00 0.00 45.76 5.80
154 155 4.452733 GCGTGAACTAGGGCCGCT 62.453 66.667 0.00 0.00 41.06 5.52
155 156 2.509336 CGTGAACTAGGGCCGCTG 60.509 66.667 0.00 0.00 0.00 5.18
156 157 2.125106 GTGAACTAGGGCCGCTGG 60.125 66.667 0.00 0.00 0.00 4.85
166 167 4.629779 GCCGCTGGCCTAAACTAA 57.370 55.556 3.32 0.00 44.06 2.24
167 168 3.095922 GCCGCTGGCCTAAACTAAT 57.904 52.632 3.32 0.00 44.06 1.73
168 169 0.663153 GCCGCTGGCCTAAACTAATG 59.337 55.000 3.32 0.00 44.06 1.90
169 170 0.663153 CCGCTGGCCTAAACTAATGC 59.337 55.000 3.32 0.00 0.00 3.56
170 171 0.304705 CGCTGGCCTAAACTAATGCG 59.695 55.000 3.32 2.49 36.41 4.73
171 172 1.379527 GCTGGCCTAAACTAATGCGT 58.620 50.000 3.32 0.00 0.00 5.24
172 173 1.064060 GCTGGCCTAAACTAATGCGTG 59.936 52.381 3.32 0.00 0.00 5.34
173 174 1.670811 CTGGCCTAAACTAATGCGTGG 59.329 52.381 3.32 0.00 0.00 4.94
174 175 1.003812 TGGCCTAAACTAATGCGTGGT 59.996 47.619 3.32 0.00 0.00 4.16
175 176 2.236644 TGGCCTAAACTAATGCGTGGTA 59.763 45.455 3.32 0.00 0.00 3.25
176 177 3.118186 TGGCCTAAACTAATGCGTGGTAT 60.118 43.478 3.32 0.00 0.00 2.73
177 178 3.881089 GGCCTAAACTAATGCGTGGTATT 59.119 43.478 0.00 0.00 0.00 1.89
178 179 4.337274 GGCCTAAACTAATGCGTGGTATTT 59.663 41.667 0.00 0.00 0.00 1.40
179 180 5.505159 GGCCTAAACTAATGCGTGGTATTTC 60.505 44.000 0.00 0.00 0.00 2.17
180 181 5.734311 CCTAAACTAATGCGTGGTATTTCG 58.266 41.667 0.00 0.00 0.00 3.46
181 182 5.521010 CCTAAACTAATGCGTGGTATTTCGA 59.479 40.000 0.00 0.00 0.00 3.71
182 183 5.866335 AAACTAATGCGTGGTATTTCGAA 57.134 34.783 0.00 0.00 0.00 3.71
183 184 5.866335 AACTAATGCGTGGTATTTCGAAA 57.134 34.783 13.91 13.91 0.00 3.46
184 185 5.866335 ACTAATGCGTGGTATTTCGAAAA 57.134 34.783 15.66 1.71 0.00 2.29
185 186 6.431198 ACTAATGCGTGGTATTTCGAAAAT 57.569 33.333 15.66 6.39 0.00 1.82
186 187 6.848451 ACTAATGCGTGGTATTTCGAAAATT 58.152 32.000 15.66 9.67 0.00 1.82
187 188 6.745450 ACTAATGCGTGGTATTTCGAAAATTG 59.255 34.615 15.66 3.43 0.00 2.32
188 189 3.827625 TGCGTGGTATTTCGAAAATTGG 58.172 40.909 15.66 3.93 0.00 3.16
189 190 3.253677 TGCGTGGTATTTCGAAAATTGGT 59.746 39.130 15.66 0.00 0.00 3.67
190 191 3.606346 GCGTGGTATTTCGAAAATTGGTG 59.394 43.478 15.66 5.51 0.00 4.17
191 192 4.789784 CGTGGTATTTCGAAAATTGGTGT 58.210 39.130 15.66 0.00 0.00 4.16
192 193 5.216648 CGTGGTATTTCGAAAATTGGTGTT 58.783 37.500 15.66 0.00 0.00 3.32
193 194 5.688176 CGTGGTATTTCGAAAATTGGTGTTT 59.312 36.000 15.66 0.00 0.00 2.83
194 195 6.345408 CGTGGTATTTCGAAAATTGGTGTTTG 60.345 38.462 15.66 0.00 0.00 2.93
195 196 6.697892 GTGGTATTTCGAAAATTGGTGTTTGA 59.302 34.615 15.66 0.00 0.00 2.69
196 197 7.222999 GTGGTATTTCGAAAATTGGTGTTTGAA 59.777 33.333 15.66 0.00 0.00 2.69
197 198 7.764443 TGGTATTTCGAAAATTGGTGTTTGAAA 59.236 29.630 15.66 5.78 0.00 2.69
198 199 8.604890 GGTATTTCGAAAATTGGTGTTTGAAAA 58.395 29.630 15.66 0.00 0.00 2.29
201 202 6.595772 TCGAAAATTGGTGTTTGAAAATGG 57.404 33.333 0.00 0.00 0.00 3.16
202 203 6.341316 TCGAAAATTGGTGTTTGAAAATGGA 58.659 32.000 0.00 0.00 0.00 3.41
203 204 6.478344 TCGAAAATTGGTGTTTGAAAATGGAG 59.522 34.615 0.00 0.00 0.00 3.86
204 205 6.292811 CGAAAATTGGTGTTTGAAAATGGAGG 60.293 38.462 0.00 0.00 0.00 4.30
205 206 3.467374 TTGGTGTTTGAAAATGGAGGC 57.533 42.857 0.00 0.00 0.00 4.70
206 207 1.339610 TGGTGTTTGAAAATGGAGGCG 59.660 47.619 0.00 0.00 0.00 5.52
207 208 1.336795 GGTGTTTGAAAATGGAGGCGG 60.337 52.381 0.00 0.00 0.00 6.13
208 209 1.611491 GTGTTTGAAAATGGAGGCGGA 59.389 47.619 0.00 0.00 0.00 5.54
209 210 1.611491 TGTTTGAAAATGGAGGCGGAC 59.389 47.619 0.00 0.00 0.00 4.79
210 211 1.611491 GTTTGAAAATGGAGGCGGACA 59.389 47.619 0.00 0.00 0.00 4.02
211 212 1.533625 TTGAAAATGGAGGCGGACAG 58.466 50.000 0.00 0.00 0.00 3.51
212 213 0.322456 TGAAAATGGAGGCGGACAGG 60.322 55.000 0.00 0.00 0.00 4.00
213 214 0.035439 GAAAATGGAGGCGGACAGGA 60.035 55.000 0.00 0.00 0.00 3.86
214 215 0.625849 AAAATGGAGGCGGACAGGAT 59.374 50.000 0.00 0.00 0.00 3.24
215 216 0.107017 AAATGGAGGCGGACAGGATG 60.107 55.000 0.00 0.00 46.00 3.51
216 217 0.982852 AATGGAGGCGGACAGGATGA 60.983 55.000 0.00 0.00 39.69 2.92
217 218 1.406065 ATGGAGGCGGACAGGATGAG 61.406 60.000 0.00 0.00 39.69 2.90
218 219 1.758514 GGAGGCGGACAGGATGAGA 60.759 63.158 0.00 0.00 39.69 3.27
219 220 1.439644 GAGGCGGACAGGATGAGAC 59.560 63.158 0.00 0.00 39.69 3.36
220 221 2.022240 GAGGCGGACAGGATGAGACC 62.022 65.000 0.00 0.00 39.69 3.85
221 222 2.359169 GGCGGACAGGATGAGACCA 61.359 63.158 0.00 0.00 39.69 4.02
222 223 1.596934 GCGGACAGGATGAGACCAA 59.403 57.895 0.00 0.00 39.69 3.67
223 224 0.036388 GCGGACAGGATGAGACCAAA 60.036 55.000 0.00 0.00 39.69 3.28
224 225 2.009042 GCGGACAGGATGAGACCAAAG 61.009 57.143 0.00 0.00 39.69 2.77
225 226 1.406069 CGGACAGGATGAGACCAAAGG 60.406 57.143 0.00 0.00 39.69 3.11
226 227 1.909302 GGACAGGATGAGACCAAAGGA 59.091 52.381 0.00 0.00 39.69 3.36
227 228 2.507471 GGACAGGATGAGACCAAAGGAT 59.493 50.000 0.00 0.00 39.69 3.24
228 229 3.539604 GACAGGATGAGACCAAAGGATG 58.460 50.000 0.00 0.00 39.69 3.51
229 230 2.295885 CAGGATGAGACCAAAGGATGC 58.704 52.381 0.00 0.00 39.69 3.91
230 231 1.134280 AGGATGAGACCAAAGGATGCG 60.134 52.381 0.00 0.00 0.00 4.73
231 232 1.407437 GGATGAGACCAAAGGATGCGT 60.407 52.381 0.00 0.00 0.00 5.24
232 233 1.936547 GATGAGACCAAAGGATGCGTC 59.063 52.381 0.00 0.00 32.53 5.19
233 234 0.036388 TGAGACCAAAGGATGCGTCC 60.036 55.000 17.85 17.85 45.45 4.79
265 266 3.814268 CGGCCACCGCATTTCAGG 61.814 66.667 2.24 0.00 41.17 3.86
266 267 2.361104 GGCCACCGCATTTCAGGA 60.361 61.111 0.00 0.00 36.38 3.86
267 268 2.700773 GGCCACCGCATTTCAGGAC 61.701 63.158 0.00 0.00 36.38 3.85
268 269 1.971167 GCCACCGCATTTCAGGACA 60.971 57.895 0.00 0.00 34.03 4.02
269 270 1.926511 GCCACCGCATTTCAGGACAG 61.927 60.000 0.00 0.00 34.03 3.51
270 271 0.321564 CCACCGCATTTCAGGACAGA 60.322 55.000 0.00 0.00 0.00 3.41
271 272 0.798776 CACCGCATTTCAGGACAGAC 59.201 55.000 0.00 0.00 0.00 3.51
272 273 0.321653 ACCGCATTTCAGGACAGACC 60.322 55.000 0.00 0.00 39.35 3.85
273 274 1.026718 CCGCATTTCAGGACAGACCC 61.027 60.000 0.00 0.00 40.05 4.46
274 275 1.361668 CGCATTTCAGGACAGACCCG 61.362 60.000 0.00 0.00 40.05 5.28
275 276 1.026718 GCATTTCAGGACAGACCCGG 61.027 60.000 0.00 0.00 40.05 5.73
276 277 0.613260 CATTTCAGGACAGACCCGGA 59.387 55.000 0.73 0.00 40.05 5.14
277 278 0.613777 ATTTCAGGACAGACCCGGAC 59.386 55.000 0.73 0.00 40.05 4.79
278 279 0.761323 TTTCAGGACAGACCCGGACA 60.761 55.000 0.73 0.00 40.05 4.02
279 280 1.469335 TTCAGGACAGACCCGGACAC 61.469 60.000 0.73 0.00 40.05 3.67
280 281 2.989824 AGGACAGACCCGGACACG 60.990 66.667 0.73 0.00 40.05 4.49
281 282 2.987547 GGACAGACCCGGACACGA 60.988 66.667 0.73 0.00 44.60 4.35
282 283 2.257676 GACAGACCCGGACACGAC 59.742 66.667 0.73 0.00 44.60 4.34
283 284 3.278592 GACAGACCCGGACACGACC 62.279 68.421 0.73 0.00 44.60 4.79
284 285 4.065281 CAGACCCGGACACGACCC 62.065 72.222 0.73 0.00 44.60 4.46
288 289 3.712907 CCCGGACACGACCCCATT 61.713 66.667 0.73 0.00 44.60 3.16
289 290 2.435938 CCGGACACGACCCCATTG 60.436 66.667 0.00 0.00 44.60 2.82
290 291 3.124921 CGGACACGACCCCATTGC 61.125 66.667 0.00 0.00 44.60 3.56
291 292 2.750237 GGACACGACCCCATTGCC 60.750 66.667 0.00 0.00 0.00 4.52
292 293 2.750237 GACACGACCCCATTGCCC 60.750 66.667 0.00 0.00 0.00 5.36
293 294 3.256960 ACACGACCCCATTGCCCT 61.257 61.111 0.00 0.00 0.00 5.19
294 295 1.906105 GACACGACCCCATTGCCCTA 61.906 60.000 0.00 0.00 0.00 3.53
295 296 1.451387 CACGACCCCATTGCCCTAC 60.451 63.158 0.00 0.00 0.00 3.18
296 297 2.192175 CGACCCCATTGCCCTACC 59.808 66.667 0.00 0.00 0.00 3.18
297 298 2.675242 CGACCCCATTGCCCTACCA 61.675 63.158 0.00 0.00 0.00 3.25
298 299 1.694856 GACCCCATTGCCCTACCAA 59.305 57.895 0.00 0.00 0.00 3.67
299 300 0.040499 GACCCCATTGCCCTACCAAA 59.960 55.000 0.00 0.00 0.00 3.28
300 301 0.489567 ACCCCATTGCCCTACCAAAA 59.510 50.000 0.00 0.00 0.00 2.44
301 302 0.901827 CCCCATTGCCCTACCAAAAC 59.098 55.000 0.00 0.00 0.00 2.43
302 303 0.530288 CCCATTGCCCTACCAAAACG 59.470 55.000 0.00 0.00 0.00 3.60
303 304 1.540267 CCATTGCCCTACCAAAACGA 58.460 50.000 0.00 0.00 0.00 3.85
304 305 1.889829 CCATTGCCCTACCAAAACGAA 59.110 47.619 0.00 0.00 0.00 3.85
305 306 2.352323 CCATTGCCCTACCAAAACGAAC 60.352 50.000 0.00 0.00 0.00 3.95
306 307 2.054232 TTGCCCTACCAAAACGAACA 57.946 45.000 0.00 0.00 0.00 3.18
307 308 2.054232 TGCCCTACCAAAACGAACAA 57.946 45.000 0.00 0.00 0.00 2.83
308 309 2.376109 TGCCCTACCAAAACGAACAAA 58.624 42.857 0.00 0.00 0.00 2.83
309 310 2.758979 TGCCCTACCAAAACGAACAAAA 59.241 40.909 0.00 0.00 0.00 2.44
310 311 3.385111 TGCCCTACCAAAACGAACAAAAT 59.615 39.130 0.00 0.00 0.00 1.82
311 312 3.985279 GCCCTACCAAAACGAACAAAATC 59.015 43.478 0.00 0.00 0.00 2.17
312 313 4.552355 CCCTACCAAAACGAACAAAATCC 58.448 43.478 0.00 0.00 0.00 3.01
313 314 4.223659 CCTACCAAAACGAACAAAATCCG 58.776 43.478 0.00 0.00 0.00 4.18
314 315 4.023878 CCTACCAAAACGAACAAAATCCGA 60.024 41.667 0.00 0.00 0.00 4.55
315 316 4.373348 ACCAAAACGAACAAAATCCGAA 57.627 36.364 0.00 0.00 0.00 4.30
316 317 4.106909 ACCAAAACGAACAAAATCCGAAC 58.893 39.130 0.00 0.00 0.00 3.95
317 318 4.106197 CCAAAACGAACAAAATCCGAACA 58.894 39.130 0.00 0.00 0.00 3.18
318 319 4.563184 CCAAAACGAACAAAATCCGAACAA 59.437 37.500 0.00 0.00 0.00 2.83
319 320 5.062308 CCAAAACGAACAAAATCCGAACAAA 59.938 36.000 0.00 0.00 0.00 2.83
320 321 6.401153 CCAAAACGAACAAAATCCGAACAAAA 60.401 34.615 0.00 0.00 0.00 2.44
321 322 6.895607 AAACGAACAAAATCCGAACAAAAT 57.104 29.167 0.00 0.00 0.00 1.82
322 323 5.881637 ACGAACAAAATCCGAACAAAATG 57.118 34.783 0.00 0.00 0.00 2.32
323 324 5.583495 ACGAACAAAATCCGAACAAAATGA 58.417 33.333 0.00 0.00 0.00 2.57
324 325 6.037098 ACGAACAAAATCCGAACAAAATGAA 58.963 32.000 0.00 0.00 0.00 2.57
325 326 6.020201 ACGAACAAAATCCGAACAAAATGAAC 60.020 34.615 0.00 0.00 0.00 3.18
326 327 5.881637 ACAAAATCCGAACAAAATGAACG 57.118 34.783 0.00 0.00 0.00 3.95
327 328 5.344884 ACAAAATCCGAACAAAATGAACGT 58.655 33.333 0.00 0.00 0.00 3.99
328 329 5.231147 ACAAAATCCGAACAAAATGAACGTG 59.769 36.000 0.00 0.00 0.00 4.49
329 330 2.392933 TCCGAACAAAATGAACGTGC 57.607 45.000 0.00 0.00 0.00 5.34
330 331 1.041726 CCGAACAAAATGAACGTGCG 58.958 50.000 0.00 0.00 0.00 5.34
331 332 1.595976 CCGAACAAAATGAACGTGCGT 60.596 47.619 0.00 0.00 29.31 5.24
332 333 2.105659 CGAACAAAATGAACGTGCGTT 58.894 42.857 9.85 9.85 41.54 4.84
333 334 2.528287 CGAACAAAATGAACGTGCGTTT 59.472 40.909 7.98 7.98 38.60 3.60
334 335 3.719840 CGAACAAAATGAACGTGCGTTTA 59.280 39.130 14.16 7.86 38.60 2.01
335 336 4.144108 CGAACAAAATGAACGTGCGTTTAG 60.144 41.667 14.16 1.12 38.60 1.85
336 337 4.539509 ACAAAATGAACGTGCGTTTAGA 57.460 36.364 14.16 0.11 38.60 2.10
337 338 4.523813 ACAAAATGAACGTGCGTTTAGAG 58.476 39.130 14.16 9.77 38.60 2.43
338 339 4.034742 ACAAAATGAACGTGCGTTTAGAGT 59.965 37.500 14.16 10.35 38.60 3.24
339 340 3.788434 AATGAACGTGCGTTTAGAGTG 57.212 42.857 11.35 0.00 38.60 3.51
340 341 1.493772 TGAACGTGCGTTTAGAGTGG 58.506 50.000 11.35 0.00 38.60 4.00
341 342 1.202440 TGAACGTGCGTTTAGAGTGGT 60.202 47.619 11.35 0.00 38.60 4.16
342 343 1.191647 GAACGTGCGTTTAGAGTGGTG 59.808 52.381 11.35 0.00 38.60 4.17
343 344 1.219522 ACGTGCGTTTAGAGTGGTGC 61.220 55.000 0.00 0.00 0.00 5.01
344 345 1.491563 GTGCGTTTAGAGTGGTGCG 59.508 57.895 0.00 0.00 0.00 5.34
345 346 2.314647 TGCGTTTAGAGTGGTGCGC 61.315 57.895 0.00 0.00 44.29 6.09
346 347 2.027625 GCGTTTAGAGTGGTGCGCT 61.028 57.895 9.73 0.00 41.37 5.92
347 348 0.734942 GCGTTTAGAGTGGTGCGCTA 60.735 55.000 9.73 0.00 41.37 4.26
351 352 1.835494 TTAGAGTGGTGCGCTAGAGT 58.165 50.000 9.73 0.00 31.32 3.24
354 355 0.737715 GAGTGGTGCGCTAGAGTTGG 60.738 60.000 9.73 0.00 0.00 3.77
359 360 1.375908 TGCGCTAGAGTTGGCCTTG 60.376 57.895 9.73 0.00 0.00 3.61
361 362 1.375908 CGCTAGAGTTGGCCTTGCA 60.376 57.895 3.32 0.00 33.17 4.08
372 374 1.202806 TGGCCTTGCATGTATCTAGCC 60.203 52.381 3.32 7.93 39.64 3.93
466 468 2.032054 CCGCACTGATTAATCGCAATGT 59.968 45.455 10.80 2.34 0.00 2.71
512 514 3.919216 AGTACTGCGAATCTGCATATCC 58.081 45.455 0.00 0.00 45.26 2.59
577 579 1.806758 GTGAAATGCATGGCGTGGC 60.807 57.895 9.08 1.58 0.00 5.01
596 598 1.755161 CCTGATCGTACGAATCCACG 58.245 55.000 23.56 10.39 39.48 4.94
791 794 7.429340 CACTCAACAACTACAACAAAATCAGTC 59.571 37.037 0.00 0.00 0.00 3.51
792 795 6.482835 TCAACAACTACAACAAAATCAGTCG 58.517 36.000 0.00 0.00 0.00 4.18
1058 2369 2.021931 GCTTACGCAGCGACATGC 59.978 61.111 24.65 17.46 46.98 4.06
1220 2540 0.106894 GCATAAACCTCTCCCTCCCG 59.893 60.000 0.00 0.00 0.00 5.14
1221 2541 1.789523 CATAAACCTCTCCCTCCCGA 58.210 55.000 0.00 0.00 0.00 5.14
1223 2543 2.563039 TAAACCTCTCCCTCCCGATT 57.437 50.000 0.00 0.00 0.00 3.34
1233 2553 0.740737 CCTCCCGATTTGGCAATCAC 59.259 55.000 0.00 0.00 39.14 3.06
1304 2624 2.348411 AGTCCAAGAAACACCACCAG 57.652 50.000 0.00 0.00 0.00 4.00
1601 2933 1.079127 CATCCCGACCAACTTCGCT 60.079 57.895 0.00 0.00 37.70 4.93
2037 3369 7.930513 TGCTTTTGTGTATGTATAGAGATCG 57.069 36.000 0.00 0.00 0.00 3.69
2053 3385 6.720012 AGAGATCGCTTCTTCTTTCTTTTC 57.280 37.500 0.00 0.00 33.74 2.29
2055 3387 5.308825 AGATCGCTTCTTCTTTCTTTTCCA 58.691 37.500 0.00 0.00 0.00 3.53
2083 3415 3.689161 TCTGGCGTGTGATTAATTTCTGG 59.311 43.478 0.00 0.00 0.00 3.86
2141 3474 2.704464 TGTGGATTGAGATGCTGAGG 57.296 50.000 0.00 0.00 0.00 3.86
2172 3505 9.535878 CCTAAAATCTCTAGTTGATTAGTCCAC 57.464 37.037 11.86 0.00 34.19 4.02
2175 3508 3.952323 TCTCTAGTTGATTAGTCCACCGG 59.048 47.826 0.00 0.00 0.00 5.28
2201 3534 1.834263 GGCCTCTGGAGATGTAACTGT 59.166 52.381 0.00 0.00 0.00 3.55
2205 3538 5.396884 GGCCTCTGGAGATGTAACTGTAATT 60.397 44.000 0.00 0.00 0.00 1.40
2206 3539 5.755861 GCCTCTGGAGATGTAACTGTAATTC 59.244 44.000 0.00 0.00 0.00 2.17
2208 3541 6.758886 CCTCTGGAGATGTAACTGTAATTCAC 59.241 42.308 0.00 0.00 0.00 3.18
2210 3543 7.548097 TCTGGAGATGTAACTGTAATTCACTC 58.452 38.462 0.00 0.00 0.00 3.51
2212 3545 7.907389 TGGAGATGTAACTGTAATTCACTCTT 58.093 34.615 0.00 0.00 0.00 2.85
2213 3546 9.031537 TGGAGATGTAACTGTAATTCACTCTTA 57.968 33.333 0.00 0.00 0.00 2.10
2214 3547 9.522804 GGAGATGTAACTGTAATTCACTCTTAG 57.477 37.037 0.00 0.00 0.00 2.18
2215 3548 9.522804 GAGATGTAACTGTAATTCACTCTTAGG 57.477 37.037 0.00 0.00 0.00 2.69
2217 3550 6.999950 TGTAACTGTAATTCACTCTTAGGCA 58.000 36.000 0.00 0.00 0.00 4.75
2218 3551 7.620880 TGTAACTGTAATTCACTCTTAGGCAT 58.379 34.615 0.00 0.00 0.00 4.40
2219 3552 8.755028 TGTAACTGTAATTCACTCTTAGGCATA 58.245 33.333 0.00 0.00 0.00 3.14
2220 3553 9.765795 GTAACTGTAATTCACTCTTAGGCATAT 57.234 33.333 0.00 0.00 0.00 1.78
2256 3589 5.191727 TGGAAAATGGGAAGCTGATCTTA 57.808 39.130 0.00 0.00 34.56 2.10
2268 3601 4.178545 GCTGATCTTAGCTCTCTCATCC 57.821 50.000 0.00 0.00 40.52 3.51
2269 3602 3.828451 GCTGATCTTAGCTCTCTCATCCT 59.172 47.826 0.00 0.00 40.52 3.24
2270 3603 4.281688 GCTGATCTTAGCTCTCTCATCCTT 59.718 45.833 0.00 0.00 40.52 3.36
2271 3604 5.565439 GCTGATCTTAGCTCTCTCATCCTTC 60.565 48.000 0.00 0.00 40.52 3.46
2272 3605 5.704354 TGATCTTAGCTCTCTCATCCTTCT 58.296 41.667 0.00 0.00 0.00 2.85
2273 3606 5.535783 TGATCTTAGCTCTCTCATCCTTCTG 59.464 44.000 0.00 0.00 0.00 3.02
2274 3607 5.122707 TCTTAGCTCTCTCATCCTTCTGA 57.877 43.478 0.00 0.00 0.00 3.27
2275 3608 5.132502 TCTTAGCTCTCTCATCCTTCTGAG 58.867 45.833 0.00 0.00 43.33 3.35
2277 3610 3.290710 AGCTCTCTCATCCTTCTGAGAC 58.709 50.000 0.00 0.00 45.13 3.36
2278 3611 3.023119 GCTCTCTCATCCTTCTGAGACA 58.977 50.000 0.00 0.00 45.13 3.41
2279 3612 3.446873 GCTCTCTCATCCTTCTGAGACAA 59.553 47.826 0.00 0.00 45.13 3.18
2280 3613 4.099881 GCTCTCTCATCCTTCTGAGACAAT 59.900 45.833 0.00 0.00 45.13 2.71
2281 3614 5.301551 GCTCTCTCATCCTTCTGAGACAATA 59.698 44.000 0.00 0.00 45.13 1.90
2283 3616 5.596361 TCTCTCATCCTTCTGAGACAATACC 59.404 44.000 0.00 0.00 45.13 2.73
2314 3660 4.445453 TCATGCTGGCTTGAAGTATACAG 58.555 43.478 5.50 0.00 0.00 2.74
2315 3661 3.981071 TGCTGGCTTGAAGTATACAGT 57.019 42.857 5.50 0.00 0.00 3.55
2317 3663 4.755411 TGCTGGCTTGAAGTATACAGTAC 58.245 43.478 5.50 0.00 0.00 2.73
2318 3664 4.221924 TGCTGGCTTGAAGTATACAGTACA 59.778 41.667 5.50 0.00 0.00 2.90
2319 3665 5.175859 GCTGGCTTGAAGTATACAGTACAA 58.824 41.667 5.50 5.06 0.00 2.41
2320 3666 5.642063 GCTGGCTTGAAGTATACAGTACAAA 59.358 40.000 5.50 0.00 0.00 2.83
2321 3667 6.316390 GCTGGCTTGAAGTATACAGTACAAAT 59.684 38.462 5.50 0.00 0.00 2.32
2322 3668 7.148239 GCTGGCTTGAAGTATACAGTACAAATT 60.148 37.037 5.50 0.00 0.00 1.82
2323 3669 8.630054 TGGCTTGAAGTATACAGTACAAATTT 57.370 30.769 5.50 0.00 0.00 1.82
2324 3670 8.511321 TGGCTTGAAGTATACAGTACAAATTTG 58.489 33.333 16.67 16.67 0.00 2.32
2325 3671 8.512138 GGCTTGAAGTATACAGTACAAATTTGT 58.488 33.333 25.99 25.99 44.86 2.83
2326 3672 9.543018 GCTTGAAGTATACAGTACAAATTTGTC 57.457 33.333 26.46 17.36 42.35 3.18
2568 3915 0.321996 AGGTCTCCAGAACGAAAGCC 59.678 55.000 0.00 0.00 36.72 4.35
2585 3933 6.176183 CGAAAGCCATATGATATTCCTCCTT 58.824 40.000 3.65 0.00 0.00 3.36
2586 3934 6.314896 CGAAAGCCATATGATATTCCTCCTTC 59.685 42.308 3.65 0.00 0.00 3.46
2663 4013 3.932545 TTTTATTTGTGTGATGCCGCT 57.067 38.095 0.00 0.00 0.00 5.52
2714 4064 8.970859 AACATAGCTCTTAATTTGCAGAGTAT 57.029 30.769 0.00 5.37 39.10 2.12
2730 4086 7.114754 TGCAGAGTATCATTTTCTTCCTCATT 58.885 34.615 0.00 0.00 37.82 2.57
2738 4094 7.621428 TCATTTTCTTCCTCATTAGCAAGAG 57.379 36.000 0.00 0.00 0.00 2.85
2757 4145 1.884579 AGCCAATTCACAAGTGCAGAG 59.115 47.619 0.00 0.00 0.00 3.35
2820 4208 6.294176 GCATAGAACAACTCACAATCTTGGTT 60.294 38.462 0.00 0.00 0.00 3.67
2859 4247 4.885413 TGCATTAGAGCAAGCAAACAAAT 58.115 34.783 0.00 0.00 42.46 2.32
2860 4248 6.023357 TGCATTAGAGCAAGCAAACAAATA 57.977 33.333 0.00 0.00 42.46 1.40
2913 4301 6.432403 AACCCACATGGATGTAAAACAATT 57.568 33.333 0.00 0.00 39.39 2.32
3068 4456 3.615592 GCTGTTGATGGCATGATGTGTTT 60.616 43.478 3.81 0.00 0.00 2.83
3087 4475 6.136071 GTGTTTATGTGCATCGTCCAATATC 58.864 40.000 0.00 0.00 0.00 1.63
3138 4526 0.250424 CAAAGGGCAAGGCAAAAGGG 60.250 55.000 0.00 0.00 0.00 3.95
3155 4543 2.562296 AGGGGCCTTTACAGATCTTGA 58.438 47.619 0.84 0.00 0.00 3.02
3190 4578 3.691118 CAGCATTACACAGCAATACCAGT 59.309 43.478 0.00 0.00 0.00 4.00
3191 4579 4.875536 CAGCATTACACAGCAATACCAGTA 59.124 41.667 0.00 0.00 0.00 2.74
3192 4580 5.353956 CAGCATTACACAGCAATACCAGTAA 59.646 40.000 0.00 0.00 0.00 2.24
3193 4581 5.354234 AGCATTACACAGCAATACCAGTAAC 59.646 40.000 0.00 0.00 0.00 2.50
3316 4704 5.123227 TCTATTAAGTAGCACAATGTGGCC 58.877 41.667 15.78 0.00 33.64 5.36
3323 4712 0.965439 GCACAATGTGGCCCTTAACA 59.035 50.000 15.78 0.00 33.64 2.41
3392 4781 2.113860 TAAGCAGCAGTGGGTTCATC 57.886 50.000 0.00 0.00 0.00 2.92
3396 4785 0.524862 CAGCAGTGGGTTCATCAAGC 59.475 55.000 0.00 0.00 0.00 4.01
3432 4821 6.962182 TCAAGGATTACAAACTGATCCTGAT 58.038 36.000 4.99 0.00 46.81 2.90
3464 4854 3.876309 TGTTAGAAACTTGAAGGGGCT 57.124 42.857 0.00 0.00 0.00 5.19
3478 4868 1.922447 AGGGGCTGGAACACATCATTA 59.078 47.619 0.00 0.00 0.00 1.90
3487 4877 6.763135 GCTGGAACACATCATTAGATTAGTCA 59.237 38.462 0.00 0.00 30.20 3.41
3488 4878 7.042187 GCTGGAACACATCATTAGATTAGTCAG 60.042 40.741 0.00 0.00 30.20 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.142097 TGTTTCTCGTCGGCACACA 59.858 52.632 0.00 0.00 0.00 3.72
15 16 1.149361 TGTGTTTCTCGTCGGCACAC 61.149 55.000 0.96 0.96 38.59 3.82
17 18 0.865769 AATGTGTTTCTCGTCGGCAC 59.134 50.000 0.00 0.00 0.00 5.01
18 19 1.144969 GAATGTGTTTCTCGTCGGCA 58.855 50.000 0.00 0.00 0.00 5.69
19 20 1.144969 TGAATGTGTTTCTCGTCGGC 58.855 50.000 0.00 0.00 35.23 5.54
20 21 4.404507 AAATGAATGTGTTTCTCGTCGG 57.595 40.909 0.00 0.00 35.23 4.79
21 22 4.612614 CCAAAATGAATGTGTTTCTCGTCG 59.387 41.667 0.00 0.00 35.23 5.12
22 23 5.757886 TCCAAAATGAATGTGTTTCTCGTC 58.242 37.500 0.00 0.00 35.23 4.20
23 24 5.278463 CCTCCAAAATGAATGTGTTTCTCGT 60.278 40.000 0.00 0.00 35.23 4.18
24 25 5.156355 CCTCCAAAATGAATGTGTTTCTCG 58.844 41.667 0.00 0.00 35.23 4.04
25 26 4.925646 GCCTCCAAAATGAATGTGTTTCTC 59.074 41.667 0.00 0.00 35.23 2.87
26 27 4.590222 AGCCTCCAAAATGAATGTGTTTCT 59.410 37.500 0.00 0.00 35.23 2.52
27 28 4.886579 AGCCTCCAAAATGAATGTGTTTC 58.113 39.130 0.00 0.00 34.72 2.78
28 29 4.961438 AGCCTCCAAAATGAATGTGTTT 57.039 36.364 0.00 0.00 0.00 2.83
29 30 5.079643 ACTAGCCTCCAAAATGAATGTGTT 58.920 37.500 0.00 0.00 0.00 3.32
30 31 4.666512 ACTAGCCTCCAAAATGAATGTGT 58.333 39.130 0.00 0.00 0.00 3.72
31 32 5.047802 ACAACTAGCCTCCAAAATGAATGTG 60.048 40.000 0.00 0.00 0.00 3.21
32 33 5.079643 ACAACTAGCCTCCAAAATGAATGT 58.920 37.500 0.00 0.00 0.00 2.71
33 34 5.649782 ACAACTAGCCTCCAAAATGAATG 57.350 39.130 0.00 0.00 0.00 2.67
34 35 6.670695 AAACAACTAGCCTCCAAAATGAAT 57.329 33.333 0.00 0.00 0.00 2.57
35 36 6.127196 ACAAAACAACTAGCCTCCAAAATGAA 60.127 34.615 0.00 0.00 0.00 2.57
36 37 5.362430 ACAAAACAACTAGCCTCCAAAATGA 59.638 36.000 0.00 0.00 0.00 2.57
37 38 5.600696 ACAAAACAACTAGCCTCCAAAATG 58.399 37.500 0.00 0.00 0.00 2.32
38 39 5.507315 CGACAAAACAACTAGCCTCCAAAAT 60.507 40.000 0.00 0.00 0.00 1.82
39 40 4.201970 CGACAAAACAACTAGCCTCCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
40 41 3.314080 CGACAAAACAACTAGCCTCCAAA 59.686 43.478 0.00 0.00 0.00 3.28
41 42 2.875933 CGACAAAACAACTAGCCTCCAA 59.124 45.455 0.00 0.00 0.00 3.53
42 43 2.489971 CGACAAAACAACTAGCCTCCA 58.510 47.619 0.00 0.00 0.00 3.86
43 44 1.804748 CCGACAAAACAACTAGCCTCC 59.195 52.381 0.00 0.00 0.00 4.30
44 45 1.197036 GCCGACAAAACAACTAGCCTC 59.803 52.381 0.00 0.00 0.00 4.70
45 46 1.235724 GCCGACAAAACAACTAGCCT 58.764 50.000 0.00 0.00 0.00 4.58
46 47 0.110373 CGCCGACAAAACAACTAGCC 60.110 55.000 0.00 0.00 0.00 3.93
47 48 0.863144 TCGCCGACAAAACAACTAGC 59.137 50.000 0.00 0.00 0.00 3.42
48 49 2.285756 TGTTCGCCGACAAAACAACTAG 59.714 45.455 0.00 0.00 30.39 2.57
49 50 2.277969 TGTTCGCCGACAAAACAACTA 58.722 42.857 0.00 0.00 30.39 2.24
50 51 1.088306 TGTTCGCCGACAAAACAACT 58.912 45.000 0.00 0.00 30.39 3.16
51 52 1.897641 TTGTTCGCCGACAAAACAAC 58.102 45.000 0.00 0.00 37.82 3.32
52 53 2.631418 TTTGTTCGCCGACAAAACAA 57.369 40.000 10.81 5.43 44.13 2.83
56 57 4.035324 TGAATAGTTTTGTTCGCCGACAAA 59.965 37.500 9.64 9.64 45.07 2.83
57 58 3.560481 TGAATAGTTTTGTTCGCCGACAA 59.440 39.130 0.00 0.00 37.73 3.18
58 59 3.132160 TGAATAGTTTTGTTCGCCGACA 58.868 40.909 0.00 0.00 0.00 4.35
59 60 3.799137 TGAATAGTTTTGTTCGCCGAC 57.201 42.857 0.00 0.00 0.00 4.79
60 61 5.365403 AAATGAATAGTTTTGTTCGCCGA 57.635 34.783 0.00 0.00 0.00 5.54
61 62 7.555639 TTAAAATGAATAGTTTTGTTCGCCG 57.444 32.000 0.00 0.00 31.71 6.46
62 63 8.432359 CCTTTAAAATGAATAGTTTTGTTCGCC 58.568 33.333 0.00 0.00 31.71 5.54
63 64 7.949962 GCCTTTAAAATGAATAGTTTTGTTCGC 59.050 33.333 0.00 0.00 31.71 4.70
64 65 9.191995 AGCCTTTAAAATGAATAGTTTTGTTCG 57.808 29.630 0.00 0.00 31.71 3.95
66 67 9.271828 CCAGCCTTTAAAATGAATAGTTTTGTT 57.728 29.630 0.00 0.00 31.71 2.83
67 68 8.428852 ACCAGCCTTTAAAATGAATAGTTTTGT 58.571 29.630 0.00 0.00 31.71 2.83
68 69 8.831715 ACCAGCCTTTAAAATGAATAGTTTTG 57.168 30.769 0.00 0.00 31.71 2.44
69 70 9.271828 CAACCAGCCTTTAAAATGAATAGTTTT 57.728 29.630 0.00 0.00 33.67 2.43
70 71 8.428852 ACAACCAGCCTTTAAAATGAATAGTTT 58.571 29.630 0.00 0.00 0.00 2.66
71 72 7.872483 CACAACCAGCCTTTAAAATGAATAGTT 59.128 33.333 0.00 0.00 0.00 2.24
72 73 7.015195 ACACAACCAGCCTTTAAAATGAATAGT 59.985 33.333 0.00 0.00 0.00 2.12
73 74 7.378181 ACACAACCAGCCTTTAAAATGAATAG 58.622 34.615 0.00 0.00 0.00 1.73
74 75 7.296628 ACACAACCAGCCTTTAAAATGAATA 57.703 32.000 0.00 0.00 0.00 1.75
75 76 6.173427 ACACAACCAGCCTTTAAAATGAAT 57.827 33.333 0.00 0.00 0.00 2.57
76 77 5.606348 ACACAACCAGCCTTTAAAATGAA 57.394 34.783 0.00 0.00 0.00 2.57
77 78 5.355596 CAACACAACCAGCCTTTAAAATGA 58.644 37.500 0.00 0.00 0.00 2.57
78 79 4.024977 GCAACACAACCAGCCTTTAAAATG 60.025 41.667 0.00 0.00 0.00 2.32
79 80 4.126437 GCAACACAACCAGCCTTTAAAAT 58.874 39.130 0.00 0.00 0.00 1.82
80 81 3.526534 GCAACACAACCAGCCTTTAAAA 58.473 40.909 0.00 0.00 0.00 1.52
81 82 2.159028 GGCAACACAACCAGCCTTTAAA 60.159 45.455 0.00 0.00 43.70 1.52
82 83 1.410882 GGCAACACAACCAGCCTTTAA 59.589 47.619 0.00 0.00 43.70 1.52
83 84 1.036707 GGCAACACAACCAGCCTTTA 58.963 50.000 0.00 0.00 43.70 1.85
84 85 1.822615 GGCAACACAACCAGCCTTT 59.177 52.632 0.00 0.00 43.70 3.11
85 86 2.489275 CGGCAACACAACCAGCCTT 61.489 57.895 0.00 0.00 44.85 4.35
86 87 2.906897 CGGCAACACAACCAGCCT 60.907 61.111 0.00 0.00 44.85 4.58
87 88 3.977244 CCGGCAACACAACCAGCC 61.977 66.667 0.00 0.00 43.61 4.85
88 89 4.645921 GCCGGCAACACAACCAGC 62.646 66.667 24.80 0.00 0.00 4.85
89 90 4.326766 CGCCGGCAACACAACCAG 62.327 66.667 28.98 0.98 0.00 4.00
90 91 4.858680 TCGCCGGCAACACAACCA 62.859 61.111 28.98 0.00 0.00 3.67
91 92 4.025401 CTCGCCGGCAACACAACC 62.025 66.667 28.98 0.00 0.00 3.77
92 93 4.025401 CCTCGCCGGCAACACAAC 62.025 66.667 28.98 0.00 0.00 3.32
93 94 3.545124 ATCCTCGCCGGCAACACAA 62.545 57.895 28.98 6.46 0.00 3.33
94 95 4.015406 ATCCTCGCCGGCAACACA 62.015 61.111 28.98 5.83 0.00 3.72
95 96 3.499737 CATCCTCGCCGGCAACAC 61.500 66.667 28.98 0.00 0.00 3.32
96 97 4.015406 ACATCCTCGCCGGCAACA 62.015 61.111 28.98 8.56 0.00 3.33
97 98 2.845752 TACACATCCTCGCCGGCAAC 62.846 60.000 28.98 0.00 0.00 4.17
98 99 2.572095 CTACACATCCTCGCCGGCAA 62.572 60.000 28.98 7.25 0.00 4.52
99 100 3.071837 TACACATCCTCGCCGGCA 61.072 61.111 28.98 12.94 0.00 5.69
100 101 2.279517 CTACACATCCTCGCCGGC 60.280 66.667 19.07 19.07 0.00 6.13
101 102 2.417516 CCTACACATCCTCGCCGG 59.582 66.667 0.00 0.00 0.00 6.13
102 103 2.279517 GCCTACACATCCTCGCCG 60.280 66.667 0.00 0.00 0.00 6.46
103 104 2.109181 GGCCTACACATCCTCGCC 59.891 66.667 0.00 0.00 0.00 5.54
104 105 2.279517 CGGCCTACACATCCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
105 106 2.279517 GCGGCCTACACATCCTCG 60.280 66.667 0.00 0.00 0.00 4.63
106 107 1.227380 CAGCGGCCTACACATCCTC 60.227 63.158 0.00 0.00 0.00 3.71
107 108 2.735772 CCAGCGGCCTACACATCCT 61.736 63.158 0.00 0.00 0.00 3.24
108 109 2.203070 CCAGCGGCCTACACATCC 60.203 66.667 0.00 0.00 0.00 3.51
109 110 2.897350 GCCAGCGGCCTACACATC 60.897 66.667 0.00 0.00 44.06 3.06
119 120 3.429141 CAGCAACAGAGCCAGCGG 61.429 66.667 0.00 0.00 34.23 5.52
120 121 3.429141 CCAGCAACAGAGCCAGCG 61.429 66.667 0.00 0.00 34.23 5.18
121 122 3.745803 GCCAGCAACAGAGCCAGC 61.746 66.667 0.00 0.00 34.23 4.85
122 123 3.429141 CGCCAGCAACAGAGCCAG 61.429 66.667 0.00 0.00 34.23 4.85
123 124 4.254709 ACGCCAGCAACAGAGCCA 62.255 61.111 0.00 0.00 34.23 4.75
124 125 3.730761 CACGCCAGCAACAGAGCC 61.731 66.667 0.00 0.00 34.23 4.70
125 126 2.253758 TTCACGCCAGCAACAGAGC 61.254 57.895 0.00 0.00 0.00 4.09
126 127 0.882042 AGTTCACGCCAGCAACAGAG 60.882 55.000 0.00 0.00 0.00 3.35
127 128 0.391228 TAGTTCACGCCAGCAACAGA 59.609 50.000 0.00 0.00 0.00 3.41
128 129 0.792640 CTAGTTCACGCCAGCAACAG 59.207 55.000 0.00 0.00 0.00 3.16
129 130 0.602638 CCTAGTTCACGCCAGCAACA 60.603 55.000 0.00 0.00 0.00 3.33
130 131 1.298859 CCCTAGTTCACGCCAGCAAC 61.299 60.000 0.00 0.00 0.00 4.17
131 132 1.003839 CCCTAGTTCACGCCAGCAA 60.004 57.895 0.00 0.00 0.00 3.91
132 133 2.662596 CCCTAGTTCACGCCAGCA 59.337 61.111 0.00 0.00 0.00 4.41
133 134 2.820037 GCCCTAGTTCACGCCAGC 60.820 66.667 0.00 0.00 0.00 4.85
134 135 2.125106 GGCCCTAGTTCACGCCAG 60.125 66.667 0.00 0.00 41.25 4.85
135 136 4.077184 CGGCCCTAGTTCACGCCA 62.077 66.667 0.00 0.00 41.71 5.69
138 139 2.509336 CAGCGGCCCTAGTTCACG 60.509 66.667 0.00 0.00 0.00 4.35
139 140 2.125106 CCAGCGGCCCTAGTTCAC 60.125 66.667 0.00 0.00 0.00 3.18
140 141 4.096003 GCCAGCGGCCCTAGTTCA 62.096 66.667 8.18 0.00 44.06 3.18
150 151 0.663153 GCATTAGTTTAGGCCAGCGG 59.337 55.000 5.01 0.00 0.00 5.52
151 152 0.304705 CGCATTAGTTTAGGCCAGCG 59.695 55.000 5.01 2.29 37.91 5.18
152 153 1.064060 CACGCATTAGTTTAGGCCAGC 59.936 52.381 5.01 0.00 0.00 4.85
153 154 1.670811 CCACGCATTAGTTTAGGCCAG 59.329 52.381 5.01 0.00 0.00 4.85
154 155 1.003812 ACCACGCATTAGTTTAGGCCA 59.996 47.619 5.01 0.00 0.00 5.36
155 156 1.746470 ACCACGCATTAGTTTAGGCC 58.254 50.000 0.00 0.00 0.00 5.19
156 157 5.494632 AAATACCACGCATTAGTTTAGGC 57.505 39.130 0.00 0.00 0.00 3.93
157 158 5.521010 TCGAAATACCACGCATTAGTTTAGG 59.479 40.000 0.00 0.00 0.00 2.69
158 159 6.578020 TCGAAATACCACGCATTAGTTTAG 57.422 37.500 0.00 0.00 0.00 1.85
159 160 6.964741 TTCGAAATACCACGCATTAGTTTA 57.035 33.333 0.00 0.00 0.00 2.01
160 161 5.866335 TTCGAAATACCACGCATTAGTTT 57.134 34.783 0.00 0.00 0.00 2.66
161 162 5.866335 TTTCGAAATACCACGCATTAGTT 57.134 34.783 6.47 0.00 0.00 2.24
162 163 5.866335 TTTTCGAAATACCACGCATTAGT 57.134 34.783 12.12 0.00 0.00 2.24
163 164 6.196353 CCAATTTTCGAAATACCACGCATTAG 59.804 38.462 12.12 0.00 0.00 1.73
164 165 6.030849 CCAATTTTCGAAATACCACGCATTA 58.969 36.000 12.12 0.00 0.00 1.90
165 166 4.862018 CCAATTTTCGAAATACCACGCATT 59.138 37.500 12.12 2.99 0.00 3.56
166 167 4.082463 ACCAATTTTCGAAATACCACGCAT 60.082 37.500 12.12 0.00 0.00 4.73
167 168 3.253677 ACCAATTTTCGAAATACCACGCA 59.746 39.130 12.12 0.00 0.00 5.24
168 169 3.606346 CACCAATTTTCGAAATACCACGC 59.394 43.478 12.12 0.00 0.00 5.34
169 170 4.789784 ACACCAATTTTCGAAATACCACG 58.210 39.130 12.12 2.65 0.00 4.94
170 171 6.697892 TCAAACACCAATTTTCGAAATACCAC 59.302 34.615 12.12 0.00 0.00 4.16
171 172 6.806751 TCAAACACCAATTTTCGAAATACCA 58.193 32.000 12.12 0.00 0.00 3.25
172 173 7.701809 TTCAAACACCAATTTTCGAAATACC 57.298 32.000 12.12 0.00 0.00 2.73
175 176 8.127954 CCATTTTCAAACACCAATTTTCGAAAT 58.872 29.630 12.12 0.00 0.00 2.17
176 177 7.334421 TCCATTTTCAAACACCAATTTTCGAAA 59.666 29.630 6.47 6.47 0.00 3.46
177 178 6.818644 TCCATTTTCAAACACCAATTTTCGAA 59.181 30.769 0.00 0.00 0.00 3.71
178 179 6.341316 TCCATTTTCAAACACCAATTTTCGA 58.659 32.000 0.00 0.00 0.00 3.71
179 180 6.292811 CCTCCATTTTCAAACACCAATTTTCG 60.293 38.462 0.00 0.00 0.00 3.46
180 181 6.513230 GCCTCCATTTTCAAACACCAATTTTC 60.513 38.462 0.00 0.00 0.00 2.29
181 182 5.299028 GCCTCCATTTTCAAACACCAATTTT 59.701 36.000 0.00 0.00 0.00 1.82
182 183 4.821260 GCCTCCATTTTCAAACACCAATTT 59.179 37.500 0.00 0.00 0.00 1.82
183 184 4.388485 GCCTCCATTTTCAAACACCAATT 58.612 39.130 0.00 0.00 0.00 2.32
184 185 3.554752 CGCCTCCATTTTCAAACACCAAT 60.555 43.478 0.00 0.00 0.00 3.16
185 186 2.223923 CGCCTCCATTTTCAAACACCAA 60.224 45.455 0.00 0.00 0.00 3.67
186 187 1.339610 CGCCTCCATTTTCAAACACCA 59.660 47.619 0.00 0.00 0.00 4.17
187 188 1.336795 CCGCCTCCATTTTCAAACACC 60.337 52.381 0.00 0.00 0.00 4.16
188 189 1.611491 TCCGCCTCCATTTTCAAACAC 59.389 47.619 0.00 0.00 0.00 3.32
189 190 1.611491 GTCCGCCTCCATTTTCAAACA 59.389 47.619 0.00 0.00 0.00 2.83
190 191 1.611491 TGTCCGCCTCCATTTTCAAAC 59.389 47.619 0.00 0.00 0.00 2.93
191 192 1.885887 CTGTCCGCCTCCATTTTCAAA 59.114 47.619 0.00 0.00 0.00 2.69
192 193 1.533625 CTGTCCGCCTCCATTTTCAA 58.466 50.000 0.00 0.00 0.00 2.69
193 194 0.322456 CCTGTCCGCCTCCATTTTCA 60.322 55.000 0.00 0.00 0.00 2.69
194 195 0.035439 TCCTGTCCGCCTCCATTTTC 60.035 55.000 0.00 0.00 0.00 2.29
195 196 0.625849 ATCCTGTCCGCCTCCATTTT 59.374 50.000 0.00 0.00 0.00 1.82
196 197 0.107017 CATCCTGTCCGCCTCCATTT 60.107 55.000 0.00 0.00 0.00 2.32
197 198 0.982852 TCATCCTGTCCGCCTCCATT 60.983 55.000 0.00 0.00 0.00 3.16
198 199 1.383109 TCATCCTGTCCGCCTCCAT 60.383 57.895 0.00 0.00 0.00 3.41
199 200 2.038813 TCATCCTGTCCGCCTCCA 59.961 61.111 0.00 0.00 0.00 3.86
200 201 1.758514 TCTCATCCTGTCCGCCTCC 60.759 63.158 0.00 0.00 0.00 4.30
201 202 1.439644 GTCTCATCCTGTCCGCCTC 59.560 63.158 0.00 0.00 0.00 4.70
202 203 2.060980 GGTCTCATCCTGTCCGCCT 61.061 63.158 0.00 0.00 0.00 5.52
203 204 1.899437 TTGGTCTCATCCTGTCCGCC 61.899 60.000 0.00 0.00 0.00 6.13
204 205 0.036388 TTTGGTCTCATCCTGTCCGC 60.036 55.000 0.00 0.00 0.00 5.54
205 206 1.406069 CCTTTGGTCTCATCCTGTCCG 60.406 57.143 0.00 0.00 0.00 4.79
206 207 1.909302 TCCTTTGGTCTCATCCTGTCC 59.091 52.381 0.00 0.00 0.00 4.02
207 208 3.539604 CATCCTTTGGTCTCATCCTGTC 58.460 50.000 0.00 0.00 0.00 3.51
208 209 2.356535 GCATCCTTTGGTCTCATCCTGT 60.357 50.000 0.00 0.00 0.00 4.00
209 210 2.295885 GCATCCTTTGGTCTCATCCTG 58.704 52.381 0.00 0.00 0.00 3.86
210 211 1.134280 CGCATCCTTTGGTCTCATCCT 60.134 52.381 0.00 0.00 0.00 3.24
211 212 1.303309 CGCATCCTTTGGTCTCATCC 58.697 55.000 0.00 0.00 0.00 3.51
212 213 1.936547 GACGCATCCTTTGGTCTCATC 59.063 52.381 0.00 0.00 0.00 2.92
213 214 1.407437 GGACGCATCCTTTGGTCTCAT 60.407 52.381 0.00 0.00 42.45 2.90
214 215 0.036388 GGACGCATCCTTTGGTCTCA 60.036 55.000 0.00 0.00 42.45 3.27
215 216 1.084370 CGGACGCATCCTTTGGTCTC 61.084 60.000 0.00 0.00 43.73 3.36
216 217 1.079127 CGGACGCATCCTTTGGTCT 60.079 57.895 0.00 0.00 43.73 3.85
217 218 2.750888 GCGGACGCATCCTTTGGTC 61.751 63.158 12.31 0.00 43.73 4.02
218 219 2.746277 GCGGACGCATCCTTTGGT 60.746 61.111 12.31 0.00 43.73 3.67
249 250 2.361104 TCCTGAAATGCGGTGGCC 60.361 61.111 0.00 0.00 38.85 5.36
250 251 1.926511 CTGTCCTGAAATGCGGTGGC 61.927 60.000 0.00 0.00 40.52 5.01
251 252 0.321564 TCTGTCCTGAAATGCGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
252 253 0.798776 GTCTGTCCTGAAATGCGGTG 59.201 55.000 0.00 0.00 0.00 4.94
253 254 0.321653 GGTCTGTCCTGAAATGCGGT 60.322 55.000 0.00 0.00 0.00 5.68
254 255 1.026718 GGGTCTGTCCTGAAATGCGG 61.027 60.000 0.00 0.00 36.25 5.69
255 256 1.361668 CGGGTCTGTCCTGAAATGCG 61.362 60.000 0.00 0.00 45.09 4.73
256 257 1.026718 CCGGGTCTGTCCTGAAATGC 61.027 60.000 0.00 0.00 45.09 3.56
257 258 0.613260 TCCGGGTCTGTCCTGAAATG 59.387 55.000 0.00 0.00 45.09 2.32
258 259 0.613777 GTCCGGGTCTGTCCTGAAAT 59.386 55.000 0.00 0.00 45.09 2.17
259 260 0.761323 TGTCCGGGTCTGTCCTGAAA 60.761 55.000 0.00 0.00 45.09 2.69
260 261 1.152419 TGTCCGGGTCTGTCCTGAA 60.152 57.895 0.00 0.00 45.09 3.02
261 262 1.906824 GTGTCCGGGTCTGTCCTGA 60.907 63.158 0.00 0.00 45.09 3.86
262 263 2.657237 GTGTCCGGGTCTGTCCTG 59.343 66.667 0.00 0.00 42.06 3.86
263 264 2.989824 CGTGTCCGGGTCTGTCCT 60.990 66.667 0.00 0.00 36.25 3.85
264 265 2.987547 TCGTGTCCGGGTCTGTCC 60.988 66.667 0.00 0.00 33.95 4.02
265 266 2.257676 GTCGTGTCCGGGTCTGTC 59.742 66.667 0.00 0.00 33.95 3.51
266 267 3.300765 GGTCGTGTCCGGGTCTGT 61.301 66.667 0.00 0.00 33.95 3.41
267 268 4.065281 GGGTCGTGTCCGGGTCTG 62.065 72.222 0.00 0.00 33.95 3.51
271 272 3.712907 AATGGGGTCGTGTCCGGG 61.713 66.667 0.00 0.00 33.95 5.73
272 273 2.435938 CAATGGGGTCGTGTCCGG 60.436 66.667 0.00 0.00 33.95 5.14
273 274 3.124921 GCAATGGGGTCGTGTCCG 61.125 66.667 0.00 0.00 0.00 4.79
274 275 2.750237 GGCAATGGGGTCGTGTCC 60.750 66.667 0.00 0.00 0.00 4.02
275 276 1.906105 TAGGGCAATGGGGTCGTGTC 61.906 60.000 0.00 0.00 0.00 3.67
276 277 1.921346 TAGGGCAATGGGGTCGTGT 60.921 57.895 0.00 0.00 0.00 4.49
277 278 1.451387 GTAGGGCAATGGGGTCGTG 60.451 63.158 0.00 0.00 0.00 4.35
278 279 2.676265 GGTAGGGCAATGGGGTCGT 61.676 63.158 0.00 0.00 0.00 4.34
279 280 2.192175 GGTAGGGCAATGGGGTCG 59.808 66.667 0.00 0.00 0.00 4.79
280 281 0.040499 TTTGGTAGGGCAATGGGGTC 59.960 55.000 0.00 0.00 0.00 4.46
281 282 0.489567 TTTTGGTAGGGCAATGGGGT 59.510 50.000 0.00 0.00 0.00 4.95
282 283 0.901827 GTTTTGGTAGGGCAATGGGG 59.098 55.000 0.00 0.00 0.00 4.96
283 284 0.530288 CGTTTTGGTAGGGCAATGGG 59.470 55.000 0.00 0.00 0.00 4.00
284 285 1.540267 TCGTTTTGGTAGGGCAATGG 58.460 50.000 0.00 0.00 0.00 3.16
285 286 2.294791 TGTTCGTTTTGGTAGGGCAATG 59.705 45.455 0.00 0.00 0.00 2.82
286 287 2.588620 TGTTCGTTTTGGTAGGGCAAT 58.411 42.857 0.00 0.00 0.00 3.56
287 288 2.054232 TGTTCGTTTTGGTAGGGCAA 57.946 45.000 0.00 0.00 0.00 4.52
288 289 2.054232 TTGTTCGTTTTGGTAGGGCA 57.946 45.000 0.00 0.00 0.00 5.36
289 290 3.439895 TTTTGTTCGTTTTGGTAGGGC 57.560 42.857 0.00 0.00 0.00 5.19
290 291 4.552355 GGATTTTGTTCGTTTTGGTAGGG 58.448 43.478 0.00 0.00 0.00 3.53
291 292 4.023878 TCGGATTTTGTTCGTTTTGGTAGG 60.024 41.667 0.00 0.00 0.00 3.18
292 293 5.098218 TCGGATTTTGTTCGTTTTGGTAG 57.902 39.130 0.00 0.00 0.00 3.18
293 294 5.163683 TGTTCGGATTTTGTTCGTTTTGGTA 60.164 36.000 0.00 0.00 0.00 3.25
294 295 4.106909 GTTCGGATTTTGTTCGTTTTGGT 58.893 39.130 0.00 0.00 0.00 3.67
295 296 4.106197 TGTTCGGATTTTGTTCGTTTTGG 58.894 39.130 0.00 0.00 0.00 3.28
296 297 5.688348 TTGTTCGGATTTTGTTCGTTTTG 57.312 34.783 0.00 0.00 0.00 2.44
297 298 6.707599 TTTTGTTCGGATTTTGTTCGTTTT 57.292 29.167 0.00 0.00 0.00 2.43
298 299 6.531948 TCATTTTGTTCGGATTTTGTTCGTTT 59.468 30.769 0.00 0.00 0.00 3.60
299 300 6.037098 TCATTTTGTTCGGATTTTGTTCGTT 58.963 32.000 0.00 0.00 0.00 3.85
300 301 5.583495 TCATTTTGTTCGGATTTTGTTCGT 58.417 33.333 0.00 0.00 0.00 3.85
301 302 6.344032 GTTCATTTTGTTCGGATTTTGTTCG 58.656 36.000 0.00 0.00 0.00 3.95
302 303 6.020201 ACGTTCATTTTGTTCGGATTTTGTTC 60.020 34.615 0.00 0.00 0.00 3.18
303 304 5.808030 ACGTTCATTTTGTTCGGATTTTGTT 59.192 32.000 0.00 0.00 0.00 2.83
304 305 5.231147 CACGTTCATTTTGTTCGGATTTTGT 59.769 36.000 0.00 0.00 0.00 2.83
305 306 5.655576 CACGTTCATTTTGTTCGGATTTTG 58.344 37.500 0.00 0.00 0.00 2.44
306 307 4.208253 GCACGTTCATTTTGTTCGGATTTT 59.792 37.500 0.00 0.00 0.00 1.82
307 308 3.733727 GCACGTTCATTTTGTTCGGATTT 59.266 39.130 0.00 0.00 0.00 2.17
308 309 3.305110 GCACGTTCATTTTGTTCGGATT 58.695 40.909 0.00 0.00 0.00 3.01
309 310 2.664424 CGCACGTTCATTTTGTTCGGAT 60.664 45.455 0.00 0.00 0.00 4.18
310 311 1.333347 CGCACGTTCATTTTGTTCGGA 60.333 47.619 0.00 0.00 0.00 4.55
311 312 1.041726 CGCACGTTCATTTTGTTCGG 58.958 50.000 0.00 0.00 0.00 4.30
312 313 1.737249 ACGCACGTTCATTTTGTTCG 58.263 45.000 0.00 0.00 0.00 3.95
313 314 4.965158 TCTAAACGCACGTTCATTTTGTTC 59.035 37.500 9.10 0.00 37.35 3.18
314 315 4.911053 TCTAAACGCACGTTCATTTTGTT 58.089 34.783 9.10 0.00 37.35 2.83
315 316 4.034742 ACTCTAAACGCACGTTCATTTTGT 59.965 37.500 9.10 1.92 37.35 2.83
316 317 4.375698 CACTCTAAACGCACGTTCATTTTG 59.624 41.667 9.10 1.29 37.35 2.44
317 318 4.523813 CACTCTAAACGCACGTTCATTTT 58.476 39.130 9.10 0.00 37.35 1.82
318 319 3.059188 CCACTCTAAACGCACGTTCATTT 60.059 43.478 9.10 0.00 37.35 2.32
319 320 2.478894 CCACTCTAAACGCACGTTCATT 59.521 45.455 9.10 0.00 37.35 2.57
320 321 2.066262 CCACTCTAAACGCACGTTCAT 58.934 47.619 9.10 0.00 37.35 2.57
321 322 1.202440 ACCACTCTAAACGCACGTTCA 60.202 47.619 9.10 0.00 37.35 3.18
322 323 1.191647 CACCACTCTAAACGCACGTTC 59.808 52.381 9.10 0.00 37.35 3.95
323 324 1.214367 CACCACTCTAAACGCACGTT 58.786 50.000 1.93 1.93 40.45 3.99
324 325 1.219522 GCACCACTCTAAACGCACGT 61.220 55.000 0.00 0.00 0.00 4.49
325 326 1.491563 GCACCACTCTAAACGCACG 59.508 57.895 0.00 0.00 0.00 5.34
326 327 1.491563 CGCACCACTCTAAACGCAC 59.508 57.895 0.00 0.00 0.00 5.34
327 328 2.314647 GCGCACCACTCTAAACGCA 61.315 57.895 0.30 0.00 45.25 5.24
328 329 0.734942 TAGCGCACCACTCTAAACGC 60.735 55.000 11.47 0.00 46.20 4.84
329 330 1.135489 TCTAGCGCACCACTCTAAACG 60.135 52.381 11.47 0.00 0.00 3.60
330 331 2.094649 ACTCTAGCGCACCACTCTAAAC 60.095 50.000 11.47 0.00 0.00 2.01
331 332 2.168496 ACTCTAGCGCACCACTCTAAA 58.832 47.619 11.47 0.00 0.00 1.85
332 333 1.835494 ACTCTAGCGCACCACTCTAA 58.165 50.000 11.47 0.00 0.00 2.10
333 334 1.472878 CAACTCTAGCGCACCACTCTA 59.527 52.381 11.47 0.00 0.00 2.43
334 335 0.244994 CAACTCTAGCGCACCACTCT 59.755 55.000 11.47 0.00 0.00 3.24
335 336 0.737715 CCAACTCTAGCGCACCACTC 60.738 60.000 11.47 0.00 0.00 3.51
336 337 1.293498 CCAACTCTAGCGCACCACT 59.707 57.895 11.47 0.00 0.00 4.00
337 338 2.391389 GCCAACTCTAGCGCACCAC 61.391 63.158 11.47 0.00 0.00 4.16
338 339 2.047274 GCCAACTCTAGCGCACCA 60.047 61.111 11.47 0.00 0.00 4.17
339 340 2.804828 AAGGCCAACTCTAGCGCACC 62.805 60.000 11.47 0.00 0.00 5.01
340 341 1.376037 AAGGCCAACTCTAGCGCAC 60.376 57.895 11.47 0.00 0.00 5.34
341 342 1.375908 CAAGGCCAACTCTAGCGCA 60.376 57.895 11.47 0.00 0.00 6.09
342 343 2.754995 GCAAGGCCAACTCTAGCGC 61.755 63.158 5.01 0.00 0.00 5.92
343 344 0.745845 ATGCAAGGCCAACTCTAGCG 60.746 55.000 5.01 0.00 0.00 4.26
344 345 0.737219 CATGCAAGGCCAACTCTAGC 59.263 55.000 5.01 0.00 0.00 3.42
345 346 2.119801 ACATGCAAGGCCAACTCTAG 57.880 50.000 5.01 0.00 0.00 2.43
346 347 3.455910 AGATACATGCAAGGCCAACTCTA 59.544 43.478 5.01 0.00 0.00 2.43
347 348 2.240667 AGATACATGCAAGGCCAACTCT 59.759 45.455 5.01 0.00 0.00 3.24
351 352 2.575532 GCTAGATACATGCAAGGCCAA 58.424 47.619 5.01 0.00 0.00 4.52
354 355 2.260844 TGGCTAGATACATGCAAGGC 57.739 50.000 0.00 0.00 0.00 4.35
359 360 3.276857 CCCATGATGGCTAGATACATGC 58.723 50.000 5.79 0.00 37.56 4.06
361 362 3.307975 GCACCCATGATGGCTAGATACAT 60.308 47.826 5.79 0.00 35.79 2.29
372 374 1.065109 CATGTGCGCACCCATGATG 59.935 57.895 35.72 26.75 40.70 3.07
466 468 4.753542 ATGCCCGTGGTTGCATTA 57.246 50.000 0.00 0.00 45.52 1.90
577 579 1.755161 CGTGGATTCGTACGATCAGG 58.245 55.000 20.27 17.62 42.54 3.86
742 744 3.994392 GAGCTTGGTACTGAATTTCGACA 59.006 43.478 0.00 0.00 0.00 4.35
1078 2389 2.591571 TCATCTCTGTGATTGCCTCG 57.408 50.000 0.00 0.00 32.05 4.63
1220 2540 4.191033 TGACAATGGTGATTGCCAAATC 57.809 40.909 0.00 0.00 42.54 2.17
1221 2541 4.202336 TGTTGACAATGGTGATTGCCAAAT 60.202 37.500 0.00 0.00 41.75 2.32
1223 2543 2.697229 TGTTGACAATGGTGATTGCCAA 59.303 40.909 0.00 0.00 42.54 4.52
1385 2717 3.345808 GCGCACGGCTTGAAGTGA 61.346 61.111 0.30 0.00 40.56 3.41
2020 3352 7.812648 AGAAGAAGCGATCTCTATACATACAC 58.187 38.462 0.00 0.00 37.42 2.90
2036 3368 5.979517 ACAAATGGAAAAGAAAGAAGAAGCG 59.020 36.000 0.00 0.00 0.00 4.68
2037 3369 7.708322 AGAACAAATGGAAAAGAAAGAAGAAGC 59.292 33.333 0.00 0.00 0.00 3.86
2053 3385 0.950836 TCACACGCCAGAACAAATGG 59.049 50.000 0.00 0.00 41.04 3.16
2055 3387 5.643379 ATTAATCACACGCCAGAACAAAT 57.357 34.783 0.00 0.00 0.00 2.32
2101 3434 4.567959 ACAAAACAAGTGCTCAAATTCAGC 59.432 37.500 2.93 2.93 37.40 4.26
2152 3485 4.585162 CCGGTGGACTAATCAACTAGAGAT 59.415 45.833 0.00 0.00 0.00 2.75
2158 3491 0.108329 CGCCGGTGGACTAATCAACT 60.108 55.000 7.26 0.00 0.00 3.16
2162 3495 1.217882 CAATCGCCGGTGGACTAATC 58.782 55.000 16.49 0.00 0.00 1.75
2175 3508 0.883814 CATCTCCAGAGGCCAATCGC 60.884 60.000 5.01 0.00 0.00 4.58
2187 3520 7.482169 AGAGTGAATTACAGTTACATCTCCA 57.518 36.000 0.00 0.00 31.63 3.86
2210 3543 9.784531 CCAACCTGGAATATATATATGCCTAAG 57.215 37.037 24.69 16.67 40.96 2.18
2268 3601 7.821359 TGAAGAATCAAGGTATTGTCTCAGAAG 59.179 37.037 0.00 0.00 37.68 2.85
2269 3602 7.679783 TGAAGAATCAAGGTATTGTCTCAGAA 58.320 34.615 0.00 0.00 37.68 3.02
2270 3603 7.244886 TGAAGAATCAAGGTATTGTCTCAGA 57.755 36.000 0.00 0.00 37.68 3.27
2271 3604 7.466996 GCATGAAGAATCAAGGTATTGTCTCAG 60.467 40.741 0.00 0.00 39.49 3.35
2272 3605 6.317140 GCATGAAGAATCAAGGTATTGTCTCA 59.683 38.462 0.00 0.00 39.49 3.27
2273 3606 6.541641 AGCATGAAGAATCAAGGTATTGTCTC 59.458 38.462 0.00 0.00 39.49 3.36
2274 3607 6.318144 CAGCATGAAGAATCAAGGTATTGTCT 59.682 38.462 0.00 0.00 39.69 3.41
2275 3608 6.459298 CCAGCATGAAGAATCAAGGTATTGTC 60.459 42.308 0.00 0.00 39.69 3.18
2276 3609 5.359009 CCAGCATGAAGAATCAAGGTATTGT 59.641 40.000 0.00 0.00 39.69 2.71
2277 3610 5.735354 GCCAGCATGAAGAATCAAGGTATTG 60.735 44.000 0.00 0.00 39.69 1.90
2278 3611 4.340381 GCCAGCATGAAGAATCAAGGTATT 59.660 41.667 0.00 0.00 39.69 1.89
2279 3612 3.887716 GCCAGCATGAAGAATCAAGGTAT 59.112 43.478 0.00 0.00 39.69 2.73
2280 3613 3.054139 AGCCAGCATGAAGAATCAAGGTA 60.054 43.478 0.00 0.00 39.69 3.08
2281 3614 2.097825 GCCAGCATGAAGAATCAAGGT 58.902 47.619 0.00 0.00 39.69 3.50
2283 3616 3.442625 TCAAGCCAGCATGAAGAATCAAG 59.557 43.478 0.00 0.00 39.69 3.02
2310 3656 8.725405 TGAACTCTTGACAAATTTGTACTGTA 57.275 30.769 23.33 7.99 42.43 2.74
2314 3660 8.398665 AGAACTGAACTCTTGACAAATTTGTAC 58.601 33.333 23.33 16.39 42.43 2.90
2315 3661 8.506168 AGAACTGAACTCTTGACAAATTTGTA 57.494 30.769 23.33 8.62 42.43 2.41
2326 3672 6.425504 GTCACATTCAAGAACTGAACTCTTG 58.574 40.000 6.28 6.28 46.80 3.02
2327 3673 5.529060 GGTCACATTCAAGAACTGAACTCTT 59.471 40.000 1.84 0.00 46.80 2.85
2568 3915 6.877855 CACACAGGAAGGAGGAATATCATATG 59.122 42.308 0.00 0.00 0.00 1.78
2585 3933 1.490490 GAGGAATATGGCCACACAGGA 59.510 52.381 8.16 0.00 41.22 3.86
2586 3934 1.477558 GGAGGAATATGGCCACACAGG 60.478 57.143 8.16 0.00 41.84 4.00
2663 4013 4.808895 CAGAGCATTTGTGGCTATTACGTA 59.191 41.667 0.00 0.00 42.78 3.57
2723 4073 3.939740 ATTGGCTCTTGCTAATGAGGA 57.060 42.857 0.00 0.00 46.30 3.71
2730 4086 3.503363 CACTTGTGAATTGGCTCTTGCTA 59.497 43.478 0.00 0.00 39.59 3.49
2738 4094 1.881973 TCTCTGCACTTGTGAATTGGC 59.118 47.619 4.79 0.00 0.00 4.52
2820 4208 8.735692 TCTAATGCAATTATCATTGTGTCAGA 57.264 30.769 12.70 6.63 41.84 3.27
2854 4242 4.396166 CGATGGTGAAGGAAGCTTATTTGT 59.604 41.667 0.00 0.00 0.00 2.83
2859 4247 2.565391 TGTCGATGGTGAAGGAAGCTTA 59.435 45.455 0.00 0.00 0.00 3.09
2860 4248 1.347707 TGTCGATGGTGAAGGAAGCTT 59.652 47.619 0.00 0.00 0.00 3.74
2913 4301 2.447572 TGCTCCAGGTGGGTGTGA 60.448 61.111 0.00 0.00 38.11 3.58
3068 4456 4.890158 AGGATATTGGACGATGCACATA 57.110 40.909 0.00 0.00 0.00 2.29
3087 4475 3.971032 ACTTTTGTTCGAGAGCAAAGG 57.029 42.857 17.88 17.88 41.33 3.11
3138 4526 6.349300 TCATAGTTCAAGATCTGTAAAGGCC 58.651 40.000 0.00 0.00 0.00 5.19
3155 4543 7.627088 GCTGTGTAATGCTGAAACATCATAGTT 60.627 37.037 0.00 0.00 0.00 2.24
3191 4579 9.699703 GATCTCAACTTCTTTAGTAGACTTGTT 57.300 33.333 0.00 0.00 35.54 2.83
3192 4580 8.308207 GGATCTCAACTTCTTTAGTAGACTTGT 58.692 37.037 0.00 0.00 35.54 3.16
3193 4581 8.307483 TGGATCTCAACTTCTTTAGTAGACTTG 58.693 37.037 0.00 0.00 35.54 3.16
3251 4639 8.286800 CCTTTGATATCTCGTCTAGTAGAGTTG 58.713 40.741 0.00 0.00 36.03 3.16
3316 4704 3.451178 TCGAATCCTTCCTCCTGTTAAGG 59.549 47.826 0.00 0.00 46.06 2.69
3323 4712 3.917300 ACTGTATCGAATCCTTCCTCCT 58.083 45.455 0.00 0.00 0.00 3.69
3364 4753 4.139786 CCCACTGCTGCTTATCATGTTAT 58.860 43.478 0.00 0.00 0.00 1.89
3392 4781 4.997565 TCCTTGAAAGTTTTCAGTGCTTG 58.002 39.130 7.30 0.00 46.68 4.01
3396 4785 8.807581 GTTTGTAATCCTTGAAAGTTTTCAGTG 58.192 33.333 7.30 5.43 46.68 3.66
3432 4821 5.779241 AGTTTCTAACATTCCCCATCTGA 57.221 39.130 0.00 0.00 0.00 3.27
3441 4830 4.767409 AGCCCCTTCAAGTTTCTAACATTC 59.233 41.667 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.