Multiple sequence alignment - TraesCS5A01G078600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G078600 chr5A 100.000 5361 0 0 1668 7028 97225365 97230725 0.000000e+00 9901
1 TraesCS5A01G078600 chr5A 100.000 1185 0 0 1 1185 97223698 97224882 0.000000e+00 2189
2 TraesCS5A01G078600 chr5B 95.146 4965 176 29 2086 7028 111909481 111904560 0.000000e+00 7773
3 TraesCS5A01G078600 chr5B 95.330 621 24 3 565 1184 111910671 111910055 0.000000e+00 981
4 TraesCS5A01G078600 chr5B 89.850 266 9 5 325 572 111912290 111912025 6.800000e-85 326
5 TraesCS5A01G078600 chr5B 91.195 159 12 2 1668 1826 111910035 111909879 1.540000e-51 215
6 TraesCS5A01G078600 chr5B 85.965 114 10 3 1881 1990 111909594 111909483 4.450000e-22 117
7 TraesCS5A01G078600 chr5B 87.629 97 11 1 1993 2089 664951565 664951660 2.070000e-20 111
8 TraesCS5A01G078600 chr5D 97.420 3798 88 7 2529 6320 102286759 102282966 0.000000e+00 6462
9 TraesCS5A01G078600 chr5D 92.022 890 40 12 325 1185 102288544 102287657 0.000000e+00 1221
10 TraesCS5A01G078600 chr5D 97.309 669 10 3 1818 2479 102287426 102286759 0.000000e+00 1129
11 TraesCS5A01G078600 chr5D 94.637 634 21 4 6403 7028 102282126 102281498 0.000000e+00 970
12 TraesCS5A01G078600 chr5D 93.656 331 20 1 1 330 54205847 54206177 1.760000e-135 494
13 TraesCS5A01G078600 chr5D 93.636 330 20 1 1 329 543341886 543341557 6.330000e-135 492
14 TraesCS5A01G078600 chr5D 89.939 328 32 1 1 327 541898809 541898482 8.430000e-114 422
15 TraesCS5A01G078600 chr5D 85.467 289 12 9 6270 6549 102282406 102282139 2.500000e-69 274
16 TraesCS5A01G078600 chr5D 94.565 92 2 3 6232 6323 97041629 97041717 9.510000e-29 139
17 TraesCS5A01G078600 chr1D 94.311 334 18 1 1 333 12196130 12195797 1.750000e-140 510
18 TraesCS5A01G078600 chr1D 94.529 329 16 2 1 328 99641892 99642219 2.260000e-139 507
19 TraesCS5A01G078600 chr1D 100.000 80 0 0 6228 6307 315607880 315607959 1.580000e-31 148
20 TraesCS5A01G078600 chr3D 93.373 332 20 2 1 331 1288963 1288633 2.280000e-134 490
21 TraesCS5A01G078600 chr2A 93.578 327 20 1 4 329 683007339 683007013 2.950000e-133 486
22 TraesCS5A01G078600 chr2A 93.878 98 2 3 6229 6323 24307384 24307480 2.040000e-30 145
23 TraesCS5A01G078600 chr6B 89.458 332 33 2 1 330 30092697 30093028 1.090000e-112 418
24 TraesCS5A01G078600 chr6B 91.579 95 4 3 1995 2085 553059081 553058987 2.060000e-25 128
25 TraesCS5A01G078600 chr6A 89.394 330 34 1 1 329 189525735 189525406 1.410000e-111 414
26 TraesCS5A01G078600 chr6A 84.906 106 13 1 1987 2092 435249371 435249473 3.470000e-18 104
27 TraesCS5A01G078600 chr3A 95.833 96 1 2 6230 6325 655646764 655646672 1.220000e-32 152
28 TraesCS5A01G078600 chr1B 100.000 82 0 0 6226 6307 427468668 427468749 1.220000e-32 152
29 TraesCS5A01G078600 chr1B 98.795 83 1 0 6225 6307 427472153 427472235 1.580000e-31 148
30 TraesCS5A01G078600 chr1A 94.792 96 4 1 6229 6323 531049452 531049357 1.580000e-31 148
31 TraesCS5A01G078600 chr7A 87.879 99 11 1 1992 2089 8774964 8775062 1.600000e-21 115
32 TraesCS5A01G078600 chr6D 88.172 93 10 1 1993 2085 245495195 245495104 7.450000e-20 110
33 TraesCS5A01G078600 chr4A 88.298 94 7 3 1995 2085 734094309 734094401 7.450000e-20 110
34 TraesCS5A01G078600 chr2B 89.011 91 7 1 1995 2085 22317048 22316961 7.450000e-20 110
35 TraesCS5A01G078600 chr2B 88.421 95 4 2 1995 2089 650285735 650285648 2.680000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G078600 chr5A 97223698 97230725 7027 False 6045.0 9901 100.0000 1 7028 2 chr5A.!!$F1 7027
1 TraesCS5A01G078600 chr5B 111904560 111912290 7730 True 1882.4 7773 91.4972 325 7028 5 chr5B.!!$R1 6703
2 TraesCS5A01G078600 chr5D 102281498 102288544 7046 True 2011.2 6462 93.3710 325 7028 5 chr5D.!!$R3 6703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 2396 0.101040 CTCTCCTCTCTTGCGCTCAG 59.899 60.000 9.73 4.7 0.00 3.35 F
1008 2406 0.034756 TTGCGCTCAGGCTCAGTTTA 59.965 50.000 9.73 0.0 34.53 2.01 F
1067 2465 0.103208 ACAGAGAGCGGAAATAGGCG 59.897 55.000 0.00 0.0 0.00 5.52 F
1727 3153 0.108804 TTCATCTTCGAGTGTCCGCC 60.109 55.000 0.00 0.0 0.00 6.13 F
1736 3162 1.945354 GAGTGTCCGCCGATCCTTGA 61.945 60.000 0.00 0.0 0.00 3.02 F
3810 5480 1.490490 AGCTGGAACCACTTCAAGTCA 59.510 47.619 0.00 0.0 30.67 3.41 F
5033 6704 2.463589 TTAGGCCACTGCAACCCTCG 62.464 60.000 5.01 0.0 40.13 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 3567 3.838244 TCAAATAGCATAGCCCGTCTT 57.162 42.857 0.00 0.0 0.00 3.01 R
2497 4167 6.015010 TCCAAGACAAGGAAAAACAAAGTGAA 60.015 34.615 0.00 0.0 30.71 3.18 R
2731 4401 7.521261 GCCTTTACCATTAAAGCAAATGCAAAA 60.521 33.333 8.28 0.0 42.05 2.44 R
3663 5333 1.276989 ACGGCGACCTTTGGATTTCTA 59.723 47.619 16.62 0.0 0.00 2.10 R
3924 5594 1.075601 TTGTTTCTCCTCCTGGGCAT 58.924 50.000 0.00 0.0 34.39 4.40 R
5075 6746 0.457509 CTAGCAGCTGTGGTGTCTCG 60.458 60.000 16.64 0.0 35.51 4.04 R
6226 7905 0.179124 CTGAGCTAGACGGGCTTGAC 60.179 60.000 0.00 0.0 40.40 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.532501 CTCTCCGAGGCTTCTCCC 58.467 66.667 0.00 0.00 34.10 4.30
18 19 1.380515 CTCTCCGAGGCTTCTCCCA 60.381 63.158 0.00 0.00 34.10 4.37
19 20 0.758685 CTCTCCGAGGCTTCTCCCAT 60.759 60.000 0.00 0.00 34.10 4.00
20 21 1.045350 TCTCCGAGGCTTCTCCCATG 61.045 60.000 0.00 0.00 34.10 3.66
21 22 1.306141 TCCGAGGCTTCTCCCATGT 60.306 57.895 0.00 0.00 34.10 3.21
22 23 1.153289 CCGAGGCTTCTCCCATGTG 60.153 63.158 0.00 0.00 34.10 3.21
23 24 1.617018 CCGAGGCTTCTCCCATGTGA 61.617 60.000 0.00 0.00 34.10 3.58
24 25 0.467384 CGAGGCTTCTCCCATGTGAT 59.533 55.000 0.00 0.00 34.10 3.06
25 26 1.688735 CGAGGCTTCTCCCATGTGATA 59.311 52.381 0.00 0.00 34.10 2.15
26 27 2.103094 CGAGGCTTCTCCCATGTGATAA 59.897 50.000 0.00 0.00 34.10 1.75
27 28 3.244353 CGAGGCTTCTCCCATGTGATAAT 60.244 47.826 0.00 0.00 34.10 1.28
28 29 4.070716 GAGGCTTCTCCCATGTGATAATG 58.929 47.826 0.00 0.00 34.51 1.90
29 30 3.152341 GGCTTCTCCCATGTGATAATGG 58.848 50.000 0.00 0.00 45.82 3.16
40 41 6.536731 CATGTGATAATGGAAGTAGACTGC 57.463 41.667 0.00 0.00 0.00 4.40
41 42 5.939764 TGTGATAATGGAAGTAGACTGCT 57.060 39.130 0.00 0.00 0.00 4.24
42 43 6.299805 TGTGATAATGGAAGTAGACTGCTT 57.700 37.500 5.39 5.39 0.00 3.91
43 44 6.108687 TGTGATAATGGAAGTAGACTGCTTG 58.891 40.000 10.81 0.00 0.00 4.01
44 45 5.525378 GTGATAATGGAAGTAGACTGCTTGG 59.475 44.000 10.81 0.00 0.00 3.61
45 46 5.425217 TGATAATGGAAGTAGACTGCTTGGA 59.575 40.000 10.81 0.00 0.00 3.53
46 47 3.902881 ATGGAAGTAGACTGCTTGGAG 57.097 47.619 10.81 0.00 0.00 3.86
47 48 2.609747 TGGAAGTAGACTGCTTGGAGT 58.390 47.619 10.81 0.00 0.00 3.85
48 49 2.972713 TGGAAGTAGACTGCTTGGAGTT 59.027 45.455 10.81 0.00 0.00 3.01
49 50 3.244215 TGGAAGTAGACTGCTTGGAGTTG 60.244 47.826 10.81 0.00 0.00 3.16
50 51 3.330267 GAAGTAGACTGCTTGGAGTTGG 58.670 50.000 10.81 0.00 0.00 3.77
51 52 2.330216 AGTAGACTGCTTGGAGTTGGT 58.670 47.619 0.00 0.00 0.00 3.67
52 53 2.037772 AGTAGACTGCTTGGAGTTGGTG 59.962 50.000 0.00 0.00 0.00 4.17
53 54 1.131638 AGACTGCTTGGAGTTGGTGA 58.868 50.000 0.00 0.00 0.00 4.02
54 55 1.202698 AGACTGCTTGGAGTTGGTGAC 60.203 52.381 0.00 0.00 0.00 3.67
55 56 0.546122 ACTGCTTGGAGTTGGTGACA 59.454 50.000 0.00 0.00 39.83 3.58
56 57 0.947244 CTGCTTGGAGTTGGTGACAC 59.053 55.000 0.00 0.00 42.67 3.67
57 58 0.546122 TGCTTGGAGTTGGTGACACT 59.454 50.000 5.39 0.00 42.67 3.55
58 59 1.064758 TGCTTGGAGTTGGTGACACTT 60.065 47.619 5.39 0.00 42.67 3.16
59 60 2.024414 GCTTGGAGTTGGTGACACTTT 58.976 47.619 5.39 0.00 42.67 2.66
60 61 2.223572 GCTTGGAGTTGGTGACACTTTG 60.224 50.000 5.39 0.00 42.67 2.77
61 62 2.051334 TGGAGTTGGTGACACTTTGG 57.949 50.000 5.39 0.00 42.67 3.28
62 63 1.562008 TGGAGTTGGTGACACTTTGGA 59.438 47.619 5.39 0.00 42.67 3.53
63 64 2.025793 TGGAGTTGGTGACACTTTGGAA 60.026 45.455 5.39 0.00 42.67 3.53
64 65 2.357952 GGAGTTGGTGACACTTTGGAAC 59.642 50.000 5.39 2.00 42.67 3.62
65 66 3.279434 GAGTTGGTGACACTTTGGAACT 58.721 45.455 5.39 6.41 42.67 3.01
66 67 3.279434 AGTTGGTGACACTTTGGAACTC 58.721 45.455 5.39 0.00 42.67 3.01
67 68 3.054361 AGTTGGTGACACTTTGGAACTCT 60.054 43.478 5.39 0.00 42.67 3.24
68 69 3.194005 TGGTGACACTTTGGAACTCTC 57.806 47.619 5.39 0.00 33.40 3.20
69 70 2.135933 GGTGACACTTTGGAACTCTCG 58.864 52.381 5.39 0.00 0.00 4.04
70 71 1.527311 GTGACACTTTGGAACTCTCGC 59.473 52.381 0.00 0.00 0.00 5.03
71 72 1.149148 GACACTTTGGAACTCTCGCC 58.851 55.000 0.00 0.00 0.00 5.54
72 73 0.468226 ACACTTTGGAACTCTCGCCA 59.532 50.000 0.00 0.00 0.00 5.69
73 74 0.868406 CACTTTGGAACTCTCGCCAC 59.132 55.000 0.00 0.00 33.01 5.01
74 75 0.468226 ACTTTGGAACTCTCGCCACA 59.532 50.000 0.00 0.00 33.01 4.17
75 76 1.134220 ACTTTGGAACTCTCGCCACAA 60.134 47.619 0.00 0.00 33.01 3.33
76 77 2.154462 CTTTGGAACTCTCGCCACAAT 58.846 47.619 0.00 0.00 33.01 2.71
77 78 2.270352 TTGGAACTCTCGCCACAATT 57.730 45.000 0.00 0.00 33.01 2.32
78 79 1.808411 TGGAACTCTCGCCACAATTC 58.192 50.000 0.00 0.00 0.00 2.17
79 80 1.071542 TGGAACTCTCGCCACAATTCA 59.928 47.619 0.00 0.00 0.00 2.57
80 81 1.464997 GGAACTCTCGCCACAATTCAC 59.535 52.381 0.00 0.00 0.00 3.18
81 82 1.126846 GAACTCTCGCCACAATTCACG 59.873 52.381 0.00 0.00 0.00 4.35
82 83 0.317160 ACTCTCGCCACAATTCACGA 59.683 50.000 0.00 0.00 0.00 4.35
83 84 1.066858 ACTCTCGCCACAATTCACGAT 60.067 47.619 0.00 0.00 33.53 3.73
84 85 1.590238 CTCTCGCCACAATTCACGATC 59.410 52.381 0.00 0.00 33.53 3.69
85 86 1.204704 TCTCGCCACAATTCACGATCT 59.795 47.619 0.00 0.00 33.53 2.75
86 87 2.425668 TCTCGCCACAATTCACGATCTA 59.574 45.455 0.00 0.00 33.53 1.98
87 88 3.068165 TCTCGCCACAATTCACGATCTAT 59.932 43.478 0.00 0.00 33.53 1.98
88 89 3.792401 TCGCCACAATTCACGATCTATT 58.208 40.909 0.00 0.00 0.00 1.73
89 90 3.555547 TCGCCACAATTCACGATCTATTG 59.444 43.478 0.00 0.00 35.82 1.90
90 91 3.309682 CGCCACAATTCACGATCTATTGT 59.690 43.478 0.00 0.00 41.73 2.71
93 94 4.882671 ACAATTCACGATCTATTGTGGC 57.117 40.909 9.87 0.00 40.08 5.01
94 95 3.627577 ACAATTCACGATCTATTGTGGCC 59.372 43.478 9.87 0.00 40.08 5.36
95 96 3.845781 ATTCACGATCTATTGTGGCCT 57.154 42.857 3.32 0.00 41.50 5.19
96 97 4.955811 ATTCACGATCTATTGTGGCCTA 57.044 40.909 3.32 0.00 41.50 3.93
97 98 4.955811 TTCACGATCTATTGTGGCCTAT 57.044 40.909 3.32 0.00 41.50 2.57
98 99 4.955811 TCACGATCTATTGTGGCCTATT 57.044 40.909 3.32 0.00 41.50 1.73
99 100 5.290493 TCACGATCTATTGTGGCCTATTT 57.710 39.130 3.32 0.00 41.50 1.40
100 101 6.413783 TCACGATCTATTGTGGCCTATTTA 57.586 37.500 3.32 0.00 41.50 1.40
101 102 7.004555 TCACGATCTATTGTGGCCTATTTAT 57.995 36.000 3.32 0.00 41.50 1.40
102 103 7.450074 TCACGATCTATTGTGGCCTATTTATT 58.550 34.615 3.32 0.00 41.50 1.40
103 104 8.590204 TCACGATCTATTGTGGCCTATTTATTA 58.410 33.333 3.32 0.00 41.50 0.98
104 105 8.873830 CACGATCTATTGTGGCCTATTTATTAG 58.126 37.037 3.32 0.00 38.30 1.73
105 106 8.812972 ACGATCTATTGTGGCCTATTTATTAGA 58.187 33.333 3.32 2.24 0.00 2.10
106 107 9.823647 CGATCTATTGTGGCCTATTTATTAGAT 57.176 33.333 3.32 7.01 0.00 1.98
114 115 8.762645 TGTGGCCTATTTATTAGATGAGATAGG 58.237 37.037 3.32 0.00 39.26 2.57
115 116 8.982723 GTGGCCTATTTATTAGATGAGATAGGA 58.017 37.037 3.32 0.00 38.80 2.94
116 117 9.206690 TGGCCTATTTATTAGATGAGATAGGAG 57.793 37.037 3.32 0.00 38.80 3.69
117 118 9.427821 GGCCTATTTATTAGATGAGATAGGAGA 57.572 37.037 10.53 0.00 38.80 3.71
127 128 4.518278 TGAGATAGGAGAGCTCAGACTT 57.482 45.455 17.77 6.01 45.64 3.01
128 129 5.638530 TGAGATAGGAGAGCTCAGACTTA 57.361 43.478 17.77 8.04 45.64 2.24
129 130 5.373222 TGAGATAGGAGAGCTCAGACTTAC 58.627 45.833 17.77 8.06 45.64 2.34
130 131 5.131977 TGAGATAGGAGAGCTCAGACTTACT 59.868 44.000 17.77 12.08 45.64 2.24
131 132 6.013554 AGATAGGAGAGCTCAGACTTACTT 57.986 41.667 17.77 0.00 0.00 2.24
132 133 6.431722 AGATAGGAGAGCTCAGACTTACTTT 58.568 40.000 17.77 0.00 0.00 2.66
133 134 7.579105 AGATAGGAGAGCTCAGACTTACTTTA 58.421 38.462 17.77 0.00 0.00 1.85
134 135 5.907866 AGGAGAGCTCAGACTTACTTTAC 57.092 43.478 17.77 0.00 0.00 2.01
135 136 5.326069 AGGAGAGCTCAGACTTACTTTACA 58.674 41.667 17.77 0.00 0.00 2.41
136 137 5.955355 AGGAGAGCTCAGACTTACTTTACAT 59.045 40.000 17.77 0.00 0.00 2.29
137 138 6.096282 AGGAGAGCTCAGACTTACTTTACATC 59.904 42.308 17.77 0.00 0.00 3.06
138 139 6.096282 GGAGAGCTCAGACTTACTTTACATCT 59.904 42.308 17.77 0.00 0.00 2.90
139 140 7.363443 GGAGAGCTCAGACTTACTTTACATCTT 60.363 40.741 17.77 0.00 0.00 2.40
140 141 7.902087 AGAGCTCAGACTTACTTTACATCTTT 58.098 34.615 17.77 0.00 0.00 2.52
141 142 8.032451 AGAGCTCAGACTTACTTTACATCTTTC 58.968 37.037 17.77 0.00 0.00 2.62
142 143 6.809196 AGCTCAGACTTACTTTACATCTTTCG 59.191 38.462 0.00 0.00 0.00 3.46
143 144 6.807230 GCTCAGACTTACTTTACATCTTTCGA 59.193 38.462 0.00 0.00 0.00 3.71
144 145 7.489757 GCTCAGACTTACTTTACATCTTTCGAT 59.510 37.037 0.00 0.00 0.00 3.59
155 156 4.847365 CATCTTTCGATGTTCGTCATGT 57.153 40.909 0.00 0.00 41.68 3.21
156 157 5.949233 CATCTTTCGATGTTCGTCATGTA 57.051 39.130 0.00 0.00 41.68 2.29
157 158 6.331170 CATCTTTCGATGTTCGTCATGTAA 57.669 37.500 0.00 0.00 41.68 2.41
158 159 6.761117 CATCTTTCGATGTTCGTCATGTAAA 58.239 36.000 0.00 2.04 41.68 2.01
159 160 6.961359 TCTTTCGATGTTCGTCATGTAAAT 57.039 33.333 0.00 0.00 41.35 1.40
160 161 8.539674 CATCTTTCGATGTTCGTCATGTAAATA 58.460 33.333 0.00 0.00 41.68 1.40
161 162 8.115491 TCTTTCGATGTTCGTCATGTAAATAG 57.885 34.615 0.00 0.00 41.35 1.73
162 163 7.971722 TCTTTCGATGTTCGTCATGTAAATAGA 59.028 33.333 0.00 0.00 41.35 1.98
163 164 8.642908 TTTCGATGTTCGTCATGTAAATAGAT 57.357 30.769 0.00 0.00 41.35 1.98
164 165 7.853377 TCGATGTTCGTCATGTAAATAGATC 57.147 36.000 0.00 0.00 41.35 2.75
165 166 7.422399 TCGATGTTCGTCATGTAAATAGATCA 58.578 34.615 0.00 0.00 41.35 2.92
166 167 7.591426 TCGATGTTCGTCATGTAAATAGATCAG 59.409 37.037 0.00 0.00 41.35 2.90
167 168 6.828502 TGTTCGTCATGTAAATAGATCAGC 57.171 37.500 0.00 0.00 0.00 4.26
168 169 6.573434 TGTTCGTCATGTAAATAGATCAGCT 58.427 36.000 0.00 0.00 0.00 4.24
169 170 7.712797 TGTTCGTCATGTAAATAGATCAGCTA 58.287 34.615 0.00 0.00 0.00 3.32
170 171 8.194769 TGTTCGTCATGTAAATAGATCAGCTAA 58.805 33.333 0.00 0.00 31.66 3.09
171 172 9.197694 GTTCGTCATGTAAATAGATCAGCTAAT 57.802 33.333 0.00 0.00 31.66 1.73
172 173 8.972262 TCGTCATGTAAATAGATCAGCTAATC 57.028 34.615 0.00 0.00 31.66 1.75
173 174 8.797438 TCGTCATGTAAATAGATCAGCTAATCT 58.203 33.333 4.39 4.39 39.35 2.40
174 175 9.416794 CGTCATGTAAATAGATCAGCTAATCTT 57.583 33.333 4.24 0.00 37.24 2.40
176 177 9.935241 TCATGTAAATAGATCAGCTAATCTTCC 57.065 33.333 4.24 0.00 37.24 3.46
177 178 9.941325 CATGTAAATAGATCAGCTAATCTTCCT 57.059 33.333 4.24 0.00 37.24 3.36
178 179 9.941325 ATGTAAATAGATCAGCTAATCTTCCTG 57.059 33.333 4.24 0.00 37.24 3.86
179 180 7.875041 TGTAAATAGATCAGCTAATCTTCCTGC 59.125 37.037 4.24 0.00 37.24 4.85
180 181 6.430962 AATAGATCAGCTAATCTTCCTGCA 57.569 37.500 4.24 0.00 37.24 4.41
181 182 4.070630 AGATCAGCTAATCTTCCTGCAC 57.929 45.455 0.00 0.00 31.89 4.57
182 183 3.453717 AGATCAGCTAATCTTCCTGCACA 59.546 43.478 0.00 0.00 31.89 4.57
183 184 3.920231 TCAGCTAATCTTCCTGCACAT 57.080 42.857 0.00 0.00 0.00 3.21
184 185 3.801698 TCAGCTAATCTTCCTGCACATC 58.198 45.455 0.00 0.00 0.00 3.06
185 186 3.453717 TCAGCTAATCTTCCTGCACATCT 59.546 43.478 0.00 0.00 0.00 2.90
186 187 4.651045 TCAGCTAATCTTCCTGCACATCTA 59.349 41.667 0.00 0.00 0.00 1.98
187 188 5.306419 TCAGCTAATCTTCCTGCACATCTAT 59.694 40.000 0.00 0.00 0.00 1.98
188 189 5.408909 CAGCTAATCTTCCTGCACATCTATG 59.591 44.000 0.00 0.00 0.00 2.23
189 190 5.071519 AGCTAATCTTCCTGCACATCTATGT 59.928 40.000 0.00 0.00 42.84 2.29
218 219 3.624326 TGCTTGTGCACTTGATGTAAC 57.376 42.857 19.41 0.00 45.31 2.50
219 220 2.948315 TGCTTGTGCACTTGATGTAACA 59.052 40.909 19.41 0.75 45.31 2.41
220 221 3.003585 TGCTTGTGCACTTGATGTAACAG 59.996 43.478 19.41 0.00 45.31 3.16
221 222 3.250762 GCTTGTGCACTTGATGTAACAGA 59.749 43.478 19.41 0.00 39.41 3.41
222 223 4.083110 GCTTGTGCACTTGATGTAACAGAT 60.083 41.667 19.41 0.00 39.41 2.90
223 224 5.122239 GCTTGTGCACTTGATGTAACAGATA 59.878 40.000 19.41 0.00 39.41 1.98
224 225 6.348458 GCTTGTGCACTTGATGTAACAGATAA 60.348 38.462 19.41 0.00 39.41 1.75
225 226 6.480524 TGTGCACTTGATGTAACAGATAAC 57.519 37.500 19.41 0.00 0.00 1.89
226 227 6.230472 TGTGCACTTGATGTAACAGATAACT 58.770 36.000 19.41 0.00 0.00 2.24
242 243 7.118496 CAGATAACTGGGTAGATGAAACTCT 57.882 40.000 0.00 0.00 40.14 3.24
243 244 8.239038 CAGATAACTGGGTAGATGAAACTCTA 57.761 38.462 0.00 0.00 40.14 2.43
244 245 8.696374 CAGATAACTGGGTAGATGAAACTCTAA 58.304 37.037 0.00 0.00 40.14 2.10
245 246 8.919145 AGATAACTGGGTAGATGAAACTCTAAG 58.081 37.037 0.00 0.00 29.78 2.18
246 247 5.346181 ACTGGGTAGATGAAACTCTAAGC 57.654 43.478 0.00 0.00 29.78 3.09
247 248 5.026790 ACTGGGTAGATGAAACTCTAAGCT 58.973 41.667 0.00 0.00 29.78 3.74
248 249 5.485708 ACTGGGTAGATGAAACTCTAAGCTT 59.514 40.000 3.48 3.48 29.78 3.74
249 250 5.978814 TGGGTAGATGAAACTCTAAGCTTC 58.021 41.667 0.00 0.00 29.78 3.86
250 251 5.104900 TGGGTAGATGAAACTCTAAGCTTCC 60.105 44.000 0.00 0.00 29.78 3.46
251 252 5.129650 GGGTAGATGAAACTCTAAGCTTCCT 59.870 44.000 0.00 0.00 29.78 3.36
252 253 6.045955 GGTAGATGAAACTCTAAGCTTCCTG 58.954 44.000 0.00 0.00 29.78 3.86
253 254 5.096443 AGATGAAACTCTAAGCTTCCTGG 57.904 43.478 0.00 0.00 0.00 4.45
254 255 4.534103 AGATGAAACTCTAAGCTTCCTGGT 59.466 41.667 0.00 0.00 0.00 4.00
255 256 4.008074 TGAAACTCTAAGCTTCCTGGTG 57.992 45.455 0.00 0.00 0.00 4.17
256 257 3.646162 TGAAACTCTAAGCTTCCTGGTGA 59.354 43.478 0.00 0.00 0.00 4.02
257 258 3.686916 AACTCTAAGCTTCCTGGTGAC 57.313 47.619 0.00 0.00 0.00 3.67
258 259 1.903183 ACTCTAAGCTTCCTGGTGACC 59.097 52.381 0.00 0.00 0.00 4.02
259 260 1.902508 CTCTAAGCTTCCTGGTGACCA 59.097 52.381 0.00 3.40 0.00 4.02
268 269 2.344535 CTGGTGACCAGCCTTTTGG 58.655 57.895 20.01 0.00 45.13 3.28
269 270 0.178992 CTGGTGACCAGCCTTTTGGA 60.179 55.000 20.01 0.00 45.13 3.53
270 271 0.482446 TGGTGACCAGCCTTTTGGAT 59.518 50.000 0.00 0.00 44.07 3.41
292 293 7.432350 GATGACTCATCCATGAATACCTTTC 57.568 40.000 7.71 0.00 35.07 2.62
293 294 5.359756 TGACTCATCCATGAATACCTTTCG 58.640 41.667 0.00 0.00 36.18 3.46
294 295 5.128663 TGACTCATCCATGAATACCTTTCGA 59.871 40.000 0.00 0.00 36.18 3.71
295 296 6.179906 ACTCATCCATGAATACCTTTCGAT 57.820 37.500 0.00 0.00 36.18 3.59
296 297 5.994054 ACTCATCCATGAATACCTTTCGATG 59.006 40.000 0.00 0.00 36.18 3.84
297 298 6.173427 TCATCCATGAATACCTTTCGATGA 57.827 37.500 0.00 0.00 34.14 2.92
298 299 6.591001 TCATCCATGAATACCTTTCGATGAA 58.409 36.000 0.00 0.00 33.74 2.57
299 300 7.226441 TCATCCATGAATACCTTTCGATGAAT 58.774 34.615 0.00 0.00 33.74 2.57
300 301 8.374743 TCATCCATGAATACCTTTCGATGAATA 58.625 33.333 0.00 0.00 33.74 1.75
301 302 9.002600 CATCCATGAATACCTTTCGATGAATAA 57.997 33.333 0.00 0.00 0.00 1.40
302 303 8.972458 TCCATGAATACCTTTCGATGAATAAA 57.028 30.769 0.00 0.00 0.00 1.40
303 304 9.056005 TCCATGAATACCTTTCGATGAATAAAG 57.944 33.333 0.00 0.00 33.41 1.85
304 305 7.805071 CCATGAATACCTTTCGATGAATAAAGC 59.195 37.037 0.00 0.00 32.48 3.51
305 306 8.562892 CATGAATACCTTTCGATGAATAAAGCT 58.437 33.333 0.00 0.00 32.48 3.74
306 307 8.142994 TGAATACCTTTCGATGAATAAAGCTC 57.857 34.615 0.00 0.00 32.48 4.09
307 308 7.987458 TGAATACCTTTCGATGAATAAAGCTCT 59.013 33.333 0.00 0.00 32.48 4.09
308 309 7.954788 ATACCTTTCGATGAATAAAGCTCTC 57.045 36.000 0.00 0.00 32.48 3.20
309 310 5.119694 ACCTTTCGATGAATAAAGCTCTCC 58.880 41.667 0.00 0.00 32.48 3.71
310 311 5.118990 CCTTTCGATGAATAAAGCTCTCCA 58.881 41.667 0.00 0.00 32.48 3.86
311 312 5.586243 CCTTTCGATGAATAAAGCTCTCCAA 59.414 40.000 0.00 0.00 32.48 3.53
312 313 6.261826 CCTTTCGATGAATAAAGCTCTCCAAT 59.738 38.462 0.00 0.00 32.48 3.16
313 314 7.201767 CCTTTCGATGAATAAAGCTCTCCAATT 60.202 37.037 0.00 0.00 32.48 2.32
314 315 8.731275 TTTCGATGAATAAAGCTCTCCAATTA 57.269 30.769 0.00 0.00 0.00 1.40
315 316 7.953158 TCGATGAATAAAGCTCTCCAATTAG 57.047 36.000 0.00 0.00 0.00 1.73
316 317 7.500992 TCGATGAATAAAGCTCTCCAATTAGT 58.499 34.615 0.00 0.00 0.00 2.24
317 318 8.638873 TCGATGAATAAAGCTCTCCAATTAGTA 58.361 33.333 0.00 0.00 0.00 1.82
318 319 9.429359 CGATGAATAAAGCTCTCCAATTAGTAT 57.571 33.333 0.00 0.00 0.00 2.12
320 321 8.383318 TGAATAAAGCTCTCCAATTAGTATGC 57.617 34.615 0.00 0.00 0.00 3.14
321 322 7.992608 TGAATAAAGCTCTCCAATTAGTATGCA 59.007 33.333 0.00 0.00 0.00 3.96
322 323 8.752005 AATAAAGCTCTCCAATTAGTATGCAA 57.248 30.769 0.00 0.00 0.00 4.08
323 324 8.752005 ATAAAGCTCTCCAATTAGTATGCAAA 57.248 30.769 0.00 0.00 0.00 3.68
374 381 2.029964 AACGCCACCAGTGTACGG 59.970 61.111 13.00 0.00 38.61 4.02
376 383 4.673298 CGCCACCAGTGTACGGCA 62.673 66.667 13.32 0.00 45.14 5.69
398 405 3.173240 GAAGAGCCGACGTCGCAC 61.173 66.667 31.73 24.26 38.18 5.34
399 406 3.891586 GAAGAGCCGACGTCGCACA 62.892 63.158 31.73 0.00 38.18 4.57
660 2040 2.121832 TCCGGGGTCATGTCCTGT 59.878 61.111 8.93 0.00 0.00 4.00
691 2071 2.879462 CGTAGCTGTTCCGGCGAC 60.879 66.667 9.30 0.00 41.21 5.19
817 2198 2.035449 AGACGTCGTCATCCAGTTTGAA 59.965 45.455 26.17 0.00 34.60 2.69
998 2396 0.101040 CTCTCCTCTCTTGCGCTCAG 59.899 60.000 9.73 4.70 0.00 3.35
1008 2406 0.034756 TTGCGCTCAGGCTCAGTTTA 59.965 50.000 9.73 0.00 34.53 2.01
1009 2407 0.390340 TGCGCTCAGGCTCAGTTTAG 60.390 55.000 9.73 0.00 36.09 1.85
1038 2436 0.977395 CCGCTAGGGATAGGGAAAGG 59.023 60.000 8.65 0.00 38.47 3.11
1067 2465 0.103208 ACAGAGAGCGGAAATAGGCG 59.897 55.000 0.00 0.00 0.00 5.52
1074 2472 1.755380 AGCGGAAATAGGCGTTAGTCT 59.245 47.619 0.00 0.00 35.78 3.24
1110 2508 1.679977 GCAGCAGCTCCATTTCCCA 60.680 57.895 0.00 0.00 37.91 4.37
1127 2525 3.469970 ATCTCCCGCCGCACATCA 61.470 61.111 0.00 0.00 0.00 3.07
1135 2533 2.456119 GCCGCACATCACGAGGAAG 61.456 63.158 0.00 0.00 0.00 3.46
1176 2574 0.712775 GTATGATGATCTCGCGCTGC 59.287 55.000 5.56 0.00 0.00 5.25
1724 3150 4.626172 GGTACTTTTCATCTTCGAGTGTCC 59.374 45.833 0.00 0.00 0.00 4.02
1727 3153 0.108804 TTCATCTTCGAGTGTCCGCC 60.109 55.000 0.00 0.00 0.00 6.13
1736 3162 1.945354 GAGTGTCCGCCGATCCTTGA 61.945 60.000 0.00 0.00 0.00 3.02
1745 3171 2.420022 CGCCGATCCTTGAAAATCTTGT 59.580 45.455 0.00 0.00 0.00 3.16
1766 3192 3.704545 AATTTGATGGATTAGGGGCCA 57.295 42.857 4.39 0.00 38.78 5.36
1769 3195 2.681319 TGATGGATTAGGGGCCATTG 57.319 50.000 4.39 0.00 44.60 2.82
1813 3240 2.863137 GCATTGCGTTTCTTTGGTTTGA 59.137 40.909 0.00 0.00 0.00 2.69
1864 3482 7.606456 CCAAAAAGGTCTCAGCTGTTAGTATTA 59.394 37.037 14.67 0.00 0.00 0.98
1874 3492 8.236084 TCAGCTGTTAGTATTAGAAACGAAAC 57.764 34.615 14.67 0.00 0.00 2.78
1875 3493 7.868922 TCAGCTGTTAGTATTAGAAACGAAACA 59.131 33.333 14.67 0.00 0.00 2.83
1903 3567 5.468540 TCCTTCAAGAAAATCGAGAGTCA 57.531 39.130 0.00 0.00 0.00 3.41
1969 3633 3.963383 AACAACTTGGAACACGTCATC 57.037 42.857 0.00 0.00 40.96 2.92
2044 3708 5.005490 GCGTTTAGATCACTAAAGTAGCACC 59.995 44.000 0.00 0.00 45.42 5.01
2179 3849 2.183478 TGTGTGCGATGGAAAGTGAT 57.817 45.000 0.00 0.00 0.00 3.06
2479 4149 9.419297 GACTTAGTGTCTTTACATGATTGTGTA 57.581 33.333 0.00 0.00 42.21 2.90
2494 4164 7.827819 TGATTGTGTATGTTACTAGTCAAGC 57.172 36.000 0.00 0.00 0.00 4.01
2497 4167 6.835819 TGTGTATGTTACTAGTCAAGCTCT 57.164 37.500 0.00 0.00 0.00 4.09
2521 4191 5.719173 TCACTTTGTTTTTCCTTGTCTTGG 58.281 37.500 0.00 0.00 0.00 3.61
2731 4401 6.209192 TGTTCAGGTATGTGCTCAAATTCAAT 59.791 34.615 0.00 0.00 0.00 2.57
2881 4551 5.006386 AGAGCCTACCTGTCAATTTTCAAG 58.994 41.667 0.00 0.00 0.00 3.02
2916 4586 8.148351 TGATATTTATCTTAAGTTCCCGAGTGG 58.852 37.037 1.63 0.00 33.88 4.00
2943 4613 5.222079 TGTGGCTAAAATGACTCTACACA 57.778 39.130 0.00 0.00 34.37 3.72
3049 4719 4.141505 TGGAAGACACTCATGTTCAGGAAA 60.142 41.667 0.00 0.00 39.95 3.13
3118 4788 2.359169 TGACAGCTCCCCATCGTCC 61.359 63.158 0.00 0.00 0.00 4.79
3663 5333 2.173569 ACAGTGAGAAAAGCAGAAGGGT 59.826 45.455 0.00 0.00 0.00 4.34
3810 5480 1.490490 AGCTGGAACCACTTCAAGTCA 59.510 47.619 0.00 0.00 30.67 3.41
3924 5594 2.832129 AGAGCACCTCCACGAAGAAATA 59.168 45.455 0.00 0.00 0.00 1.40
4078 5748 4.065088 ACGATGCAAGCTTAAGAGACAAA 58.935 39.130 6.67 0.00 0.00 2.83
4223 5893 5.808042 ATCTGATCGGTTTTCTTCACATG 57.192 39.130 0.42 0.00 0.00 3.21
4230 5900 6.384258 TCGGTTTTCTTCACATGAAAATGA 57.616 33.333 0.00 0.00 42.76 2.57
4481 6151 3.066760 CGTCTTCTTTTGGCCAGTCTTTT 59.933 43.478 5.11 0.00 0.00 2.27
4511 6181 2.812011 ACGCATCAACAGTTTACCTTCC 59.188 45.455 0.00 0.00 0.00 3.46
4587 6257 4.833390 AGCAGGTGAAGTATAGTGAAACC 58.167 43.478 0.00 0.00 37.80 3.27
4617 6287 5.547465 TCTGTAGACATCGGAACAAACAAT 58.453 37.500 0.00 0.00 0.00 2.71
4626 6296 6.200097 ACATCGGAACAAACAATTAGCAAAAC 59.800 34.615 0.00 0.00 0.00 2.43
4642 6312 9.869757 ATTAGCAAAACTTGGTTGGTATATTTC 57.130 29.630 0.00 0.00 42.20 2.17
4647 6317 4.606210 ACTTGGTTGGTATATTTCCCCAC 58.394 43.478 0.00 0.00 0.00 4.61
4675 6345 7.704578 AACACAGAGTAGCTAACTTCTATCA 57.295 36.000 0.00 0.00 39.07 2.15
4709 6379 6.092092 TGAAAATATGAAGCATCGGTTGTTG 58.908 36.000 0.00 0.00 0.00 3.33
4934 6605 5.065218 ACCGACATTTGAAGATATGCAACTC 59.935 40.000 0.00 0.00 0.00 3.01
5033 6704 2.463589 TTAGGCCACTGCAACCCTCG 62.464 60.000 5.01 0.00 40.13 4.63
5060 6731 2.613223 CGATGCTGCTGATCATGAGGAT 60.613 50.000 0.09 7.57 39.53 3.24
5075 6746 2.303022 TGAGGATGAAGAGTGGGTTGTC 59.697 50.000 0.00 0.00 0.00 3.18
5097 6768 0.895530 GACACCACAGCTGCTAGGTA 59.104 55.000 21.38 0.00 32.01 3.08
5160 6831 1.526917 CCCTTGGGTGCCGATGATC 60.527 63.158 0.00 0.00 0.00 2.92
5162 6833 1.224315 CTTGGGTGCCGATGATCCA 59.776 57.895 0.00 0.00 0.00 3.41
5195 6866 9.167311 GAGTTCCAGTTTATACATGAATTCACT 57.833 33.333 11.07 1.30 30.36 3.41
5249 6920 3.084039 TGTCAATGACAAGAATGAGGCC 58.916 45.455 14.37 0.00 39.78 5.19
5390 7061 4.187694 GTCAGGATCTTGAGATGACCAAC 58.812 47.826 7.94 0.00 34.37 3.77
5409 7080 3.315142 GACGAGCCCCACAGCATCA 62.315 63.158 0.00 0.00 34.23 3.07
5793 7469 7.233389 AGAGCTAATTGTCTCTGAACACTTA 57.767 36.000 9.60 0.00 38.18 2.24
5829 7508 8.097038 TGTTTCTAGACACAGAAAGCAGAATAT 58.903 33.333 7.65 0.00 43.39 1.28
5838 7517 7.776969 ACACAGAAAGCAGAATATACATGGAAT 59.223 33.333 0.00 0.00 0.00 3.01
5901 7580 8.301252 TCAGTTATGTGCTTGGTCTATACTTA 57.699 34.615 0.00 0.00 0.00 2.24
6023 7702 5.068460 AGCTGACTGTCCTAAGTGATATCAC 59.932 44.000 25.47 25.47 46.77 3.06
6089 7768 5.821516 TTGAAAGCAGGAAAACGTTCTTA 57.178 34.783 0.00 0.00 33.92 2.10
6143 7822 3.930336 TGATGATCACTGTGGTCTTGAC 58.070 45.455 20.73 10.36 0.00 3.18
6171 7850 3.557686 GCTTTGGTCCTTGGAATTTGCAT 60.558 43.478 0.00 0.00 0.00 3.96
6226 7905 5.387279 ACAAGTAGTGTTGTTTCACAAACG 58.613 37.500 0.00 0.00 40.15 3.60
6230 7909 4.491234 AGTGTTGTTTCACAAACGTCAA 57.509 36.364 0.00 0.00 44.28 3.18
6313 8600 0.896923 ACGGTGGGCGATTTAGTGTA 59.103 50.000 0.00 0.00 0.00 2.90
6314 8601 1.483415 ACGGTGGGCGATTTAGTGTAT 59.517 47.619 0.00 0.00 0.00 2.29
6380 8668 9.241919 TGGCAGATGATTCAATTCTAACTTTTA 57.758 29.630 0.00 0.00 0.00 1.52
6437 8727 3.492313 CAATCACGCCTAACTGCTTTTC 58.508 45.455 0.00 0.00 0.00 2.29
6438 8728 1.519408 TCACGCCTAACTGCTTTTCC 58.481 50.000 0.00 0.00 0.00 3.13
6439 8729 0.521735 CACGCCTAACTGCTTTTCCC 59.478 55.000 0.00 0.00 0.00 3.97
6440 8730 0.608308 ACGCCTAACTGCTTTTCCCC 60.608 55.000 0.00 0.00 0.00 4.81
6443 8733 1.004862 GCCTAACTGCTTTTCCCCTCT 59.995 52.381 0.00 0.00 0.00 3.69
6472 8762 2.814336 GTGGGAATCACACCTGACTTTC 59.186 50.000 3.86 0.00 45.39 2.62
6480 8933 4.780815 TCACACCTGACTTTCACAGAAAT 58.219 39.130 0.00 0.00 37.54 2.17
6496 8949 6.032094 CACAGAAATTATCCATCACAGCAAC 58.968 40.000 0.00 0.00 0.00 4.17
6735 9196 7.174253 TGTGTTCTCTGGAAAAATACACCATAC 59.826 37.037 0.00 0.00 32.81 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.045350 CATGGGAGAAGCCTCGGAGA 61.045 60.000 6.58 0.00 40.33 3.71
2 3 1.333636 ACATGGGAGAAGCCTCGGAG 61.334 60.000 0.00 0.00 40.33 4.63
3 4 1.306141 ACATGGGAGAAGCCTCGGA 60.306 57.895 0.00 0.00 40.33 4.55
4 5 1.153289 CACATGGGAGAAGCCTCGG 60.153 63.158 0.00 0.00 40.33 4.63
5 6 0.467384 ATCACATGGGAGAAGCCTCG 59.533 55.000 2.98 0.00 40.33 4.63
6 7 3.845781 TTATCACATGGGAGAAGCCTC 57.154 47.619 2.98 0.00 38.70 4.70
7 8 3.181436 CCATTATCACATGGGAGAAGCCT 60.181 47.826 11.23 0.00 40.29 4.58
8 9 3.152341 CCATTATCACATGGGAGAAGCC 58.848 50.000 11.23 0.00 40.29 4.35
9 10 4.090761 TCCATTATCACATGGGAGAAGC 57.909 45.455 11.23 0.00 43.74 3.86
14 15 5.905331 AGTCTACTTCCATTATCACATGGGA 59.095 40.000 0.00 0.00 43.74 4.37
15 16 5.994054 CAGTCTACTTCCATTATCACATGGG 59.006 44.000 0.00 0.00 43.74 4.00
16 17 5.468072 GCAGTCTACTTCCATTATCACATGG 59.532 44.000 0.00 0.00 44.80 3.66
17 18 6.286758 AGCAGTCTACTTCCATTATCACATG 58.713 40.000 0.00 0.00 0.00 3.21
18 19 6.491714 AGCAGTCTACTTCCATTATCACAT 57.508 37.500 0.00 0.00 0.00 3.21
19 20 5.939764 AGCAGTCTACTTCCATTATCACA 57.060 39.130 0.00 0.00 0.00 3.58
20 21 5.525378 CCAAGCAGTCTACTTCCATTATCAC 59.475 44.000 0.00 0.00 0.00 3.06
21 22 5.425217 TCCAAGCAGTCTACTTCCATTATCA 59.575 40.000 0.00 0.00 0.00 2.15
22 23 5.918608 TCCAAGCAGTCTACTTCCATTATC 58.081 41.667 0.00 0.00 0.00 1.75
23 24 5.426833 ACTCCAAGCAGTCTACTTCCATTAT 59.573 40.000 0.00 0.00 0.00 1.28
24 25 4.777896 ACTCCAAGCAGTCTACTTCCATTA 59.222 41.667 0.00 0.00 0.00 1.90
25 26 3.584848 ACTCCAAGCAGTCTACTTCCATT 59.415 43.478 0.00 0.00 0.00 3.16
26 27 3.177228 ACTCCAAGCAGTCTACTTCCAT 58.823 45.455 0.00 0.00 0.00 3.41
27 28 2.609747 ACTCCAAGCAGTCTACTTCCA 58.390 47.619 0.00 0.00 0.00 3.53
28 29 3.330267 CAACTCCAAGCAGTCTACTTCC 58.670 50.000 0.00 0.00 0.00 3.46
29 30 3.244249 ACCAACTCCAAGCAGTCTACTTC 60.244 47.826 0.00 0.00 0.00 3.01
30 31 2.706190 ACCAACTCCAAGCAGTCTACTT 59.294 45.455 0.00 0.00 0.00 2.24
31 32 2.037772 CACCAACTCCAAGCAGTCTACT 59.962 50.000 0.00 0.00 0.00 2.57
32 33 2.037251 TCACCAACTCCAAGCAGTCTAC 59.963 50.000 0.00 0.00 0.00 2.59
33 34 2.037251 GTCACCAACTCCAAGCAGTCTA 59.963 50.000 0.00 0.00 0.00 2.59
34 35 1.131638 TCACCAACTCCAAGCAGTCT 58.868 50.000 0.00 0.00 0.00 3.24
35 36 1.230324 GTCACCAACTCCAAGCAGTC 58.770 55.000 0.00 0.00 0.00 3.51
36 37 0.546122 TGTCACCAACTCCAAGCAGT 59.454 50.000 0.00 0.00 0.00 4.40
37 38 0.947244 GTGTCACCAACTCCAAGCAG 59.053 55.000 0.00 0.00 0.00 4.24
38 39 0.546122 AGTGTCACCAACTCCAAGCA 59.454 50.000 0.00 0.00 0.00 3.91
39 40 1.680338 AAGTGTCACCAACTCCAAGC 58.320 50.000 0.00 0.00 0.00 4.01
40 41 2.358898 CCAAAGTGTCACCAACTCCAAG 59.641 50.000 0.00 0.00 0.00 3.61
41 42 2.025793 TCCAAAGTGTCACCAACTCCAA 60.026 45.455 0.00 0.00 0.00 3.53
42 43 1.562008 TCCAAAGTGTCACCAACTCCA 59.438 47.619 0.00 0.00 0.00 3.86
43 44 2.341846 TCCAAAGTGTCACCAACTCC 57.658 50.000 0.00 0.00 0.00 3.85
44 45 3.279434 AGTTCCAAAGTGTCACCAACTC 58.721 45.455 0.00 0.00 0.00 3.01
45 46 3.054361 AGAGTTCCAAAGTGTCACCAACT 60.054 43.478 0.00 0.98 0.00 3.16
46 47 3.279434 AGAGTTCCAAAGTGTCACCAAC 58.721 45.455 0.00 0.00 0.00 3.77
47 48 3.541632 GAGAGTTCCAAAGTGTCACCAA 58.458 45.455 0.00 0.00 0.00 3.67
48 49 2.483013 CGAGAGTTCCAAAGTGTCACCA 60.483 50.000 0.00 0.00 0.00 4.17
49 50 2.135933 CGAGAGTTCCAAAGTGTCACC 58.864 52.381 0.00 0.00 0.00 4.02
50 51 1.527311 GCGAGAGTTCCAAAGTGTCAC 59.473 52.381 0.00 0.00 0.00 3.67
51 52 1.540363 GGCGAGAGTTCCAAAGTGTCA 60.540 52.381 0.00 0.00 0.00 3.58
52 53 1.149148 GGCGAGAGTTCCAAAGTGTC 58.851 55.000 0.00 0.00 0.00 3.67
53 54 0.468226 TGGCGAGAGTTCCAAAGTGT 59.532 50.000 0.00 0.00 0.00 3.55
54 55 0.868406 GTGGCGAGAGTTCCAAAGTG 59.132 55.000 0.00 0.00 33.57 3.16
55 56 0.468226 TGTGGCGAGAGTTCCAAAGT 59.532 50.000 0.00 0.00 33.57 2.66
56 57 1.593196 TTGTGGCGAGAGTTCCAAAG 58.407 50.000 0.00 0.00 33.57 2.77
57 58 2.270352 ATTGTGGCGAGAGTTCCAAA 57.730 45.000 0.00 0.00 33.57 3.28
58 59 2.151202 GAATTGTGGCGAGAGTTCCAA 58.849 47.619 0.00 0.00 33.57 3.53
59 60 1.071542 TGAATTGTGGCGAGAGTTCCA 59.928 47.619 0.00 0.00 0.00 3.53
60 61 1.464997 GTGAATTGTGGCGAGAGTTCC 59.535 52.381 0.00 0.00 0.00 3.62
61 62 1.126846 CGTGAATTGTGGCGAGAGTTC 59.873 52.381 0.00 0.00 0.00 3.01
62 63 1.148310 CGTGAATTGTGGCGAGAGTT 58.852 50.000 0.00 0.00 0.00 3.01
63 64 0.317160 TCGTGAATTGTGGCGAGAGT 59.683 50.000 0.00 0.00 0.00 3.24
64 65 1.590238 GATCGTGAATTGTGGCGAGAG 59.410 52.381 0.00 0.00 36.79 3.20
65 66 1.204704 AGATCGTGAATTGTGGCGAGA 59.795 47.619 0.00 0.00 36.79 4.04
66 67 1.645034 AGATCGTGAATTGTGGCGAG 58.355 50.000 0.00 0.00 36.79 5.03
67 68 2.951457 TAGATCGTGAATTGTGGCGA 57.049 45.000 0.00 0.00 37.76 5.54
68 69 3.309682 ACAATAGATCGTGAATTGTGGCG 59.690 43.478 14.08 0.00 41.14 5.69
69 70 4.882671 ACAATAGATCGTGAATTGTGGC 57.117 40.909 14.08 0.00 41.14 5.01
72 73 3.627577 GGCCACAATAGATCGTGAATTGT 59.372 43.478 0.00 10.86 42.91 2.71
73 74 3.879295 AGGCCACAATAGATCGTGAATTG 59.121 43.478 5.01 9.93 35.02 2.32
74 75 4.156455 AGGCCACAATAGATCGTGAATT 57.844 40.909 5.01 0.00 35.02 2.17
75 76 3.845781 AGGCCACAATAGATCGTGAAT 57.154 42.857 5.01 0.00 35.02 2.57
76 77 4.955811 ATAGGCCACAATAGATCGTGAA 57.044 40.909 5.01 0.00 35.02 3.18
77 78 4.955811 AATAGGCCACAATAGATCGTGA 57.044 40.909 5.01 0.00 35.02 4.35
78 79 7.672983 AATAAATAGGCCACAATAGATCGTG 57.327 36.000 5.01 0.00 0.00 4.35
79 80 8.812972 TCTAATAAATAGGCCACAATAGATCGT 58.187 33.333 5.01 0.00 32.09 3.73
80 81 9.823647 ATCTAATAAATAGGCCACAATAGATCG 57.176 33.333 5.01 0.00 32.09 3.69
88 89 8.762645 CCTATCTCATCTAATAAATAGGCCACA 58.237 37.037 5.01 0.00 31.97 4.17
89 90 8.982723 TCCTATCTCATCTAATAAATAGGCCAC 58.017 37.037 5.01 0.00 36.98 5.01
90 91 9.206690 CTCCTATCTCATCTAATAAATAGGCCA 57.793 37.037 5.01 0.00 36.98 5.36
91 92 9.427821 TCTCCTATCTCATCTAATAAATAGGCC 57.572 37.037 0.00 0.00 36.98 5.19
96 97 9.766754 TGAGCTCTCCTATCTCATCTAATAAAT 57.233 33.333 16.19 0.00 32.48 1.40
97 98 9.241919 CTGAGCTCTCCTATCTCATCTAATAAA 57.758 37.037 16.19 0.00 36.41 1.40
98 99 8.610369 TCTGAGCTCTCCTATCTCATCTAATAA 58.390 37.037 16.19 0.00 36.41 1.40
99 100 8.046708 GTCTGAGCTCTCCTATCTCATCTAATA 58.953 40.741 16.19 0.00 36.41 0.98
100 101 6.886459 GTCTGAGCTCTCCTATCTCATCTAAT 59.114 42.308 16.19 0.00 36.41 1.73
101 102 6.044287 AGTCTGAGCTCTCCTATCTCATCTAA 59.956 42.308 16.19 0.00 36.41 2.10
102 103 5.547666 AGTCTGAGCTCTCCTATCTCATCTA 59.452 44.000 16.19 0.00 36.41 1.98
103 104 4.352001 AGTCTGAGCTCTCCTATCTCATCT 59.648 45.833 16.19 0.00 36.41 2.90
104 105 4.655963 AGTCTGAGCTCTCCTATCTCATC 58.344 47.826 16.19 0.00 36.41 2.92
105 106 4.729552 AGTCTGAGCTCTCCTATCTCAT 57.270 45.455 16.19 0.00 36.41 2.90
106 107 4.518278 AAGTCTGAGCTCTCCTATCTCA 57.482 45.455 16.19 0.00 35.74 3.27
107 108 5.621193 AGTAAGTCTGAGCTCTCCTATCTC 58.379 45.833 16.19 0.00 0.00 2.75
108 109 5.646692 AGTAAGTCTGAGCTCTCCTATCT 57.353 43.478 16.19 6.99 0.00 1.98
109 110 6.709018 AAAGTAAGTCTGAGCTCTCCTATC 57.291 41.667 16.19 5.07 0.00 2.08
110 111 7.120051 TGTAAAGTAAGTCTGAGCTCTCCTAT 58.880 38.462 16.19 1.27 0.00 2.57
111 112 6.482524 TGTAAAGTAAGTCTGAGCTCTCCTA 58.517 40.000 16.19 0.00 0.00 2.94
112 113 5.326069 TGTAAAGTAAGTCTGAGCTCTCCT 58.674 41.667 16.19 4.93 0.00 3.69
113 114 5.646577 TGTAAAGTAAGTCTGAGCTCTCC 57.353 43.478 16.19 2.48 0.00 3.71
114 115 7.095695 AGATGTAAAGTAAGTCTGAGCTCTC 57.904 40.000 16.19 5.70 0.00 3.20
115 116 7.475137 AAGATGTAAAGTAAGTCTGAGCTCT 57.525 36.000 16.19 0.00 0.00 4.09
116 117 7.008810 CGAAAGATGTAAAGTAAGTCTGAGCTC 59.991 40.741 6.82 6.82 0.00 4.09
117 118 6.809196 CGAAAGATGTAAAGTAAGTCTGAGCT 59.191 38.462 0.00 0.00 0.00 4.09
118 119 6.807230 TCGAAAGATGTAAAGTAAGTCTGAGC 59.193 38.462 0.00 0.00 33.31 4.26
136 137 6.961359 ATTTACATGACGAACATCGAAAGA 57.039 33.333 6.78 0.00 43.74 2.52
137 138 8.115491 TCTATTTACATGACGAACATCGAAAG 57.885 34.615 6.78 0.00 43.74 2.62
138 139 8.642908 ATCTATTTACATGACGAACATCGAAA 57.357 30.769 6.78 0.00 43.74 3.46
139 140 7.918562 TGATCTATTTACATGACGAACATCGAA 59.081 33.333 6.78 0.00 43.74 3.71
140 141 7.422399 TGATCTATTTACATGACGAACATCGA 58.578 34.615 6.78 0.00 43.74 3.59
141 142 7.618139 GCTGATCTATTTACATGACGAACATCG 60.618 40.741 0.00 0.00 46.93 3.84
142 143 7.383572 AGCTGATCTATTTACATGACGAACATC 59.616 37.037 0.00 0.00 37.07 3.06
143 144 7.212976 AGCTGATCTATTTACATGACGAACAT 58.787 34.615 0.00 0.00 40.17 2.71
144 145 6.573434 AGCTGATCTATTTACATGACGAACA 58.427 36.000 0.00 0.00 0.00 3.18
145 146 8.575565 TTAGCTGATCTATTTACATGACGAAC 57.424 34.615 0.00 0.00 0.00 3.95
146 147 9.411801 GATTAGCTGATCTATTTACATGACGAA 57.588 33.333 11.09 0.00 0.00 3.85
147 148 8.797438 AGATTAGCTGATCTATTTACATGACGA 58.203 33.333 18.77 0.00 34.68 4.20
148 149 8.978564 AGATTAGCTGATCTATTTACATGACG 57.021 34.615 18.77 0.00 34.68 4.35
150 151 9.935241 GGAAGATTAGCTGATCTATTTACATGA 57.065 33.333 20.30 0.00 35.37 3.07
151 152 9.941325 AGGAAGATTAGCTGATCTATTTACATG 57.059 33.333 20.30 0.00 35.37 3.21
152 153 9.941325 CAGGAAGATTAGCTGATCTATTTACAT 57.059 33.333 20.30 4.02 35.37 2.29
153 154 7.875041 GCAGGAAGATTAGCTGATCTATTTACA 59.125 37.037 20.30 0.00 35.37 2.41
154 155 7.875041 TGCAGGAAGATTAGCTGATCTATTTAC 59.125 37.037 20.30 7.06 35.37 2.01
155 156 7.875041 GTGCAGGAAGATTAGCTGATCTATTTA 59.125 37.037 20.30 4.20 35.37 1.40
156 157 6.709846 GTGCAGGAAGATTAGCTGATCTATTT 59.290 38.462 20.30 6.18 35.37 1.40
157 158 6.183361 TGTGCAGGAAGATTAGCTGATCTATT 60.183 38.462 20.30 6.90 35.37 1.73
158 159 5.306419 TGTGCAGGAAGATTAGCTGATCTAT 59.694 40.000 20.30 11.18 35.37 1.98
159 160 4.651045 TGTGCAGGAAGATTAGCTGATCTA 59.349 41.667 20.30 2.08 35.37 1.98
160 161 3.453717 TGTGCAGGAAGATTAGCTGATCT 59.546 43.478 14.93 14.93 37.99 2.75
161 162 3.801698 TGTGCAGGAAGATTAGCTGATC 58.198 45.455 10.42 10.42 0.00 2.92
162 163 3.920231 TGTGCAGGAAGATTAGCTGAT 57.080 42.857 0.00 0.00 0.00 2.90
163 164 3.453717 AGATGTGCAGGAAGATTAGCTGA 59.546 43.478 0.00 0.00 0.00 4.26
164 165 3.806380 AGATGTGCAGGAAGATTAGCTG 58.194 45.455 0.00 0.00 0.00 4.24
165 166 5.071519 ACATAGATGTGCAGGAAGATTAGCT 59.928 40.000 0.00 0.00 40.03 3.32
166 167 5.303971 ACATAGATGTGCAGGAAGATTAGC 58.696 41.667 0.00 0.00 40.03 3.09
199 200 3.250762 TCTGTTACATCAAGTGCACAAGC 59.749 43.478 21.04 0.00 42.57 4.01
200 201 5.618056 ATCTGTTACATCAAGTGCACAAG 57.382 39.130 21.04 11.01 0.00 3.16
201 202 6.710295 AGTTATCTGTTACATCAAGTGCACAA 59.290 34.615 21.04 4.16 0.00 3.33
202 203 6.147656 CAGTTATCTGTTACATCAAGTGCACA 59.852 38.462 21.04 0.00 36.97 4.57
203 204 6.402550 CCAGTTATCTGTTACATCAAGTGCAC 60.403 42.308 9.40 9.40 39.82 4.57
204 205 5.643348 CCAGTTATCTGTTACATCAAGTGCA 59.357 40.000 0.30 0.00 39.82 4.57
205 206 5.065218 CCCAGTTATCTGTTACATCAAGTGC 59.935 44.000 0.30 0.00 39.82 4.40
206 207 6.173339 ACCCAGTTATCTGTTACATCAAGTG 58.827 40.000 0.30 0.00 39.82 3.16
207 208 6.374417 ACCCAGTTATCTGTTACATCAAGT 57.626 37.500 0.30 0.00 39.82 3.16
208 209 7.782049 TCTACCCAGTTATCTGTTACATCAAG 58.218 38.462 0.30 0.00 39.82 3.02
209 210 7.727578 TCTACCCAGTTATCTGTTACATCAA 57.272 36.000 0.30 0.00 39.82 2.57
210 211 7.563556 TCATCTACCCAGTTATCTGTTACATCA 59.436 37.037 0.30 0.00 39.82 3.07
211 212 7.952671 TCATCTACCCAGTTATCTGTTACATC 58.047 38.462 0.30 0.00 39.82 3.06
212 213 7.914427 TCATCTACCCAGTTATCTGTTACAT 57.086 36.000 0.30 0.00 39.82 2.29
213 214 7.727578 TTCATCTACCCAGTTATCTGTTACA 57.272 36.000 0.30 0.00 39.82 2.41
214 215 8.258708 AGTTTCATCTACCCAGTTATCTGTTAC 58.741 37.037 0.30 0.00 39.82 2.50
215 216 8.375493 AGTTTCATCTACCCAGTTATCTGTTA 57.625 34.615 0.30 0.00 39.82 2.41
216 217 7.181125 AGAGTTTCATCTACCCAGTTATCTGTT 59.819 37.037 0.30 0.00 39.82 3.16
217 218 6.670027 AGAGTTTCATCTACCCAGTTATCTGT 59.330 38.462 0.30 0.00 39.82 3.41
218 219 7.118496 AGAGTTTCATCTACCCAGTTATCTG 57.882 40.000 0.00 0.00 41.01 2.90
219 220 8.840200 TTAGAGTTTCATCTACCCAGTTATCT 57.160 34.615 0.00 0.00 31.52 1.98
220 221 7.654116 GCTTAGAGTTTCATCTACCCAGTTATC 59.346 40.741 0.00 0.00 31.52 1.75
221 222 7.345914 AGCTTAGAGTTTCATCTACCCAGTTAT 59.654 37.037 0.00 0.00 31.52 1.89
222 223 6.668283 AGCTTAGAGTTTCATCTACCCAGTTA 59.332 38.462 0.00 0.00 31.52 2.24
223 224 5.485708 AGCTTAGAGTTTCATCTACCCAGTT 59.514 40.000 0.00 0.00 31.52 3.16
224 225 5.026790 AGCTTAGAGTTTCATCTACCCAGT 58.973 41.667 0.00 0.00 31.52 4.00
225 226 5.606348 AGCTTAGAGTTTCATCTACCCAG 57.394 43.478 0.00 0.00 31.52 4.45
226 227 5.104900 GGAAGCTTAGAGTTTCATCTACCCA 60.105 44.000 0.00 0.00 37.20 4.51
227 228 5.129650 AGGAAGCTTAGAGTTTCATCTACCC 59.870 44.000 0.00 0.00 37.20 3.69
228 229 6.045955 CAGGAAGCTTAGAGTTTCATCTACC 58.954 44.000 0.00 0.00 37.20 3.18
229 230 6.045955 CCAGGAAGCTTAGAGTTTCATCTAC 58.954 44.000 0.00 0.00 37.20 2.59
230 231 5.721960 ACCAGGAAGCTTAGAGTTTCATCTA 59.278 40.000 0.00 0.00 37.20 1.98
231 232 4.534103 ACCAGGAAGCTTAGAGTTTCATCT 59.466 41.667 0.00 0.00 37.20 2.90
232 233 4.633565 CACCAGGAAGCTTAGAGTTTCATC 59.366 45.833 0.00 0.00 37.20 2.92
233 234 4.287067 TCACCAGGAAGCTTAGAGTTTCAT 59.713 41.667 0.00 0.00 37.20 2.57
234 235 3.646162 TCACCAGGAAGCTTAGAGTTTCA 59.354 43.478 0.00 0.00 37.20 2.69
235 236 3.997681 GTCACCAGGAAGCTTAGAGTTTC 59.002 47.826 0.00 0.00 35.11 2.78
236 237 3.244596 GGTCACCAGGAAGCTTAGAGTTT 60.245 47.826 0.00 0.00 0.00 2.66
237 238 2.303311 GGTCACCAGGAAGCTTAGAGTT 59.697 50.000 0.00 0.00 0.00 3.01
238 239 1.903183 GGTCACCAGGAAGCTTAGAGT 59.097 52.381 0.00 0.00 0.00 3.24
239 240 1.902508 TGGTCACCAGGAAGCTTAGAG 59.097 52.381 0.00 0.00 0.00 2.43
240 241 2.024176 TGGTCACCAGGAAGCTTAGA 57.976 50.000 0.00 0.00 0.00 2.10
251 252 0.482446 ATCCAAAAGGCTGGTCACCA 59.518 50.000 0.00 0.00 37.74 4.17
252 253 0.890683 CATCCAAAAGGCTGGTCACC 59.109 55.000 0.00 0.00 37.74 4.02
253 254 1.541588 GTCATCCAAAAGGCTGGTCAC 59.458 52.381 0.00 0.00 37.74 3.67
254 255 1.425066 AGTCATCCAAAAGGCTGGTCA 59.575 47.619 0.00 0.00 37.74 4.02
255 256 2.087646 GAGTCATCCAAAAGGCTGGTC 58.912 52.381 0.00 0.00 37.74 4.02
256 257 1.425066 TGAGTCATCCAAAAGGCTGGT 59.575 47.619 0.00 0.00 37.74 4.00
257 258 2.205022 TGAGTCATCCAAAAGGCTGG 57.795 50.000 0.00 0.00 37.87 4.85
268 269 6.146837 CGAAAGGTATTCATGGATGAGTCATC 59.853 42.308 22.69 22.69 39.87 2.92
269 270 5.994054 CGAAAGGTATTCATGGATGAGTCAT 59.006 40.000 4.98 4.98 38.19 3.06
270 271 5.128663 TCGAAAGGTATTCATGGATGAGTCA 59.871 40.000 0.00 0.00 38.19 3.41
271 272 5.601662 TCGAAAGGTATTCATGGATGAGTC 58.398 41.667 0.00 0.00 38.19 3.36
272 273 5.614324 TCGAAAGGTATTCATGGATGAGT 57.386 39.130 0.00 0.00 38.19 3.41
273 274 6.226052 TCATCGAAAGGTATTCATGGATGAG 58.774 40.000 0.00 0.00 38.19 2.90
274 275 6.173427 TCATCGAAAGGTATTCATGGATGA 57.827 37.500 0.00 0.00 37.34 2.92
275 276 6.866010 TTCATCGAAAGGTATTCATGGATG 57.134 37.500 0.00 0.00 33.22 3.51
276 277 9.573166 TTTATTCATCGAAAGGTATTCATGGAT 57.427 29.630 0.00 0.00 0.00 3.41
277 278 8.972458 TTTATTCATCGAAAGGTATTCATGGA 57.028 30.769 0.00 0.00 0.00 3.41
278 279 7.805071 GCTTTATTCATCGAAAGGTATTCATGG 59.195 37.037 0.00 0.00 33.98 3.66
279 280 8.562892 AGCTTTATTCATCGAAAGGTATTCATG 58.437 33.333 0.00 0.00 40.58 3.07
280 281 8.682936 AGCTTTATTCATCGAAAGGTATTCAT 57.317 30.769 0.00 0.00 40.58 2.57
281 282 7.987458 AGAGCTTTATTCATCGAAAGGTATTCA 59.013 33.333 0.00 0.00 41.98 2.57
282 283 8.371770 AGAGCTTTATTCATCGAAAGGTATTC 57.628 34.615 0.00 0.00 41.98 1.75
283 284 7.442666 GGAGAGCTTTATTCATCGAAAGGTATT 59.557 37.037 0.00 0.00 41.98 1.89
284 285 6.931840 GGAGAGCTTTATTCATCGAAAGGTAT 59.068 38.462 0.00 0.00 41.98 2.73
285 286 6.127168 TGGAGAGCTTTATTCATCGAAAGGTA 60.127 38.462 0.00 0.00 41.98 3.08
286 287 5.119694 GGAGAGCTTTATTCATCGAAAGGT 58.880 41.667 0.00 0.00 43.96 3.50
287 288 5.118990 TGGAGAGCTTTATTCATCGAAAGG 58.881 41.667 0.00 0.00 33.98 3.11
288 289 6.668541 TTGGAGAGCTTTATTCATCGAAAG 57.331 37.500 0.00 0.00 36.04 2.62
289 290 7.630242 AATTGGAGAGCTTTATTCATCGAAA 57.370 32.000 0.00 0.00 0.00 3.46
290 291 7.987458 ACTAATTGGAGAGCTTTATTCATCGAA 59.013 33.333 0.00 0.00 0.00 3.71
291 292 7.500992 ACTAATTGGAGAGCTTTATTCATCGA 58.499 34.615 0.00 0.00 0.00 3.59
292 293 7.721286 ACTAATTGGAGAGCTTTATTCATCG 57.279 36.000 0.00 0.00 0.00 3.84
294 295 9.007901 GCATACTAATTGGAGAGCTTTATTCAT 57.992 33.333 0.00 0.00 0.00 2.57
295 296 7.992608 TGCATACTAATTGGAGAGCTTTATTCA 59.007 33.333 0.00 0.00 0.00 2.57
296 297 8.383318 TGCATACTAATTGGAGAGCTTTATTC 57.617 34.615 0.00 0.00 0.00 1.75
297 298 8.752005 TTGCATACTAATTGGAGAGCTTTATT 57.248 30.769 0.00 0.00 0.00 1.40
298 299 8.752005 TTTGCATACTAATTGGAGAGCTTTAT 57.248 30.769 0.00 0.00 0.00 1.40
299 300 8.574251 TTTTGCATACTAATTGGAGAGCTTTA 57.426 30.769 0.00 0.00 0.00 1.85
300 301 7.466746 TTTTGCATACTAATTGGAGAGCTTT 57.533 32.000 0.00 0.00 0.00 3.51
301 302 7.466746 TTTTTGCATACTAATTGGAGAGCTT 57.533 32.000 0.00 0.00 0.00 3.74
343 344 0.317519 GGCGTTGAAAAGTTGTCCCG 60.318 55.000 0.00 0.00 0.00 5.14
998 2396 5.209977 CGGTTAAACAAACTAAACTGAGCC 58.790 41.667 0.00 0.00 38.23 4.70
1008 2406 3.775261 TCCCTAGCGGTTAAACAAACT 57.225 42.857 0.00 0.00 38.23 2.66
1009 2407 4.573607 CCTATCCCTAGCGGTTAAACAAAC 59.426 45.833 0.00 0.00 37.36 2.93
1038 2436 0.955919 CGCTCTCTGTTGTTTCCCCC 60.956 60.000 0.00 0.00 0.00 5.40
1067 2465 2.838202 TCCCCTCCATTGACAGACTAAC 59.162 50.000 0.00 0.00 0.00 2.34
1074 2472 1.274703 GCTCCTCCCCTCCATTGACA 61.275 60.000 0.00 0.00 0.00 3.58
1110 2508 3.469970 TGATGTGCGGCGGGAGAT 61.470 61.111 9.78 0.00 0.00 2.75
1127 2525 0.771755 AAAAAGGGCTCCTTCCTCGT 59.228 50.000 6.91 0.00 43.92 4.18
1684 3082 0.106268 ACCACACCACATGGCAAGAA 60.106 50.000 0.00 0.00 41.31 2.52
1697 3123 4.989168 ACTCGAAGATGAAAAGTACCACAC 59.011 41.667 0.00 0.00 33.89 3.82
1724 3150 2.420022 ACAAGATTTTCAAGGATCGGCG 59.580 45.455 0.00 0.00 0.00 6.46
1727 3153 9.793252 ATCAAATTACAAGATTTTCAAGGATCG 57.207 29.630 0.00 0.00 0.00 3.69
1745 3171 4.823364 TGGCCCCTAATCCATCAAATTA 57.177 40.909 0.00 0.00 0.00 1.40
1766 3192 5.466127 TCCTTTAGGCAGGGTTAATCAAT 57.534 39.130 0.00 0.00 34.24 2.57
1769 3195 4.399219 GGATCCTTTAGGCAGGGTTAATC 58.601 47.826 3.84 0.00 34.24 1.75
1813 3240 6.326843 GGGGGCTTATCCTAAATATCTACGAT 59.673 42.308 0.00 0.00 34.39 3.73
1839 3457 7.440523 AATACTAACAGCTGAGACCTTTTTG 57.559 36.000 23.35 5.81 0.00 2.44
1864 3482 6.262193 TGAAGGAAAAAGTGTTTCGTTTCT 57.738 33.333 13.53 0.00 36.86 2.52
1874 3492 7.417612 TCTCGATTTTCTTGAAGGAAAAAGTG 58.582 34.615 2.27 2.09 44.71 3.16
1875 3493 7.283354 ACTCTCGATTTTCTTGAAGGAAAAAGT 59.717 33.333 2.27 0.29 44.71 2.66
1903 3567 3.838244 TCAAATAGCATAGCCCGTCTT 57.162 42.857 0.00 0.00 0.00 3.01
2179 3849 6.499000 TCCAAAACGGTGAGATATCCCATATA 59.501 38.462 0.00 0.00 35.57 0.86
2479 4149 6.597832 AGTGAAGAGCTTGACTAGTAACAT 57.402 37.500 0.39 0.00 35.32 2.71
2494 4164 6.856895 AGACAAGGAAAAACAAAGTGAAGAG 58.143 36.000 0.00 0.00 0.00 2.85
2497 4167 6.015010 TCCAAGACAAGGAAAAACAAAGTGAA 60.015 34.615 0.00 0.00 30.71 3.18
2731 4401 7.521261 GCCTTTACCATTAAAGCAAATGCAAAA 60.521 33.333 8.28 0.00 42.05 2.44
3049 4719 9.487790 TTCTTTTGATCTTTCTTGTGTGTTTTT 57.512 25.926 0.00 0.00 0.00 1.94
3663 5333 1.276989 ACGGCGACCTTTGGATTTCTA 59.723 47.619 16.62 0.00 0.00 2.10
3924 5594 1.075601 TTGTTTCTCCTCCTGGGCAT 58.924 50.000 0.00 0.00 34.39 4.40
4030 5700 3.495100 CCACTGCTGTACTTGGTCTTTCT 60.495 47.826 0.00 0.00 0.00 2.52
4078 5748 0.673333 TGATGTGCATCGGCGACTTT 60.673 50.000 13.76 0.00 45.35 2.66
4127 5797 6.874288 AGCATCTTTTTGAGGAGCATATAC 57.126 37.500 0.00 0.00 0.00 1.47
4223 5893 7.173218 TGTGACAATACTGAAGGAGTCATTTTC 59.827 37.037 0.00 0.00 38.16 2.29
4230 5900 5.788450 CTTCTGTGACAATACTGAAGGAGT 58.212 41.667 14.09 0.00 45.31 3.85
4481 6151 0.036858 TGTTGATGCGTCGATGGGAA 60.037 50.000 6.79 0.00 0.00 3.97
4587 6257 3.017442 TCCGATGTCTACAGAGGTTCAG 58.983 50.000 6.55 0.00 0.00 3.02
4617 6287 8.308207 GGAAATATACCAACCAAGTTTTGCTAA 58.692 33.333 0.00 0.00 0.00 3.09
4626 6296 4.867086 AGTGGGGAAATATACCAACCAAG 58.133 43.478 0.00 0.00 35.77 3.61
4642 6312 3.008049 AGCTACTCTGTGTTTAAGTGGGG 59.992 47.826 0.00 0.00 0.00 4.96
4675 6345 9.362539 GATGCTTCATATTTTCATGACTGTTTT 57.637 29.630 0.00 0.00 34.69 2.43
4741 6411 9.802039 AATTACTACTTCCATACAAAAGGTGAA 57.198 29.630 0.00 0.00 0.00 3.18
4904 6575 6.510799 GCATATCTTCAAATGTCGGTTCTGAG 60.511 42.308 0.00 0.00 0.00 3.35
4934 6605 1.208052 ACCAACCACTCATCATCCTCG 59.792 52.381 0.00 0.00 0.00 4.63
5046 6717 4.059511 CACTCTTCATCCTCATGATCAGC 58.940 47.826 0.09 0.00 38.89 4.26
5060 6731 1.340248 GTCTCGACAACCCACTCTTCA 59.660 52.381 0.00 0.00 0.00 3.02
5075 6746 0.457509 CTAGCAGCTGTGGTGTCTCG 60.458 60.000 16.64 0.00 35.51 4.04
5097 6768 0.904649 TCATCCTCGACAGCATTGGT 59.095 50.000 0.00 0.00 0.00 3.67
5140 6811 4.431131 CATCGGCACCCAAGGGCT 62.431 66.667 4.70 0.00 39.32 5.19
5160 6831 8.335532 TGTATAAACTGGAACTCTGAATTTGG 57.664 34.615 0.00 0.00 0.00 3.28
5162 6833 9.739276 TCATGTATAAACTGGAACTCTGAATTT 57.261 29.630 0.00 0.00 0.00 1.82
5195 6866 3.896888 AGGAACCTGCATCATTTTGTTCA 59.103 39.130 0.00 0.00 35.09 3.18
5249 6920 8.307483 AGTATATCCTTCACATACTGGAAATCG 58.693 37.037 0.00 0.00 34.87 3.34
5285 6956 3.535629 CTCGCCACAGCTGAACCCA 62.536 63.158 23.35 0.00 36.60 4.51
5390 7061 4.457496 ATGCTGTGGGGCTCGTCG 62.457 66.667 0.00 0.00 0.00 5.12
5756 7427 8.535335 AGACAATTAGCTCTTAGAAGTCATTCA 58.465 33.333 0.00 0.00 37.94 2.57
5770 7446 7.518731 CTAAGTGTTCAGAGACAATTAGCTC 57.481 40.000 10.87 0.00 45.33 4.09
5793 7469 3.058914 GTGTCTAGAAACAACGCATTGCT 60.059 43.478 8.27 0.00 39.66 3.91
6089 7768 4.379082 GCCAAAATTCCTATTCGTTCACGT 60.379 41.667 0.00 0.00 40.80 4.49
6143 7822 2.282462 AAGGACCAAAGCAGCGGG 60.282 61.111 0.00 0.00 0.00 6.13
6215 7894 1.835121 GGGCTTGACGTTTGTGAAAC 58.165 50.000 0.00 0.00 38.02 2.78
6219 7898 1.157870 AGACGGGCTTGACGTTTGTG 61.158 55.000 0.00 0.00 45.68 3.33
6226 7905 0.179124 CTGAGCTAGACGGGCTTGAC 60.179 60.000 0.00 0.00 40.40 3.18
6230 7909 1.608717 CCAACTGAGCTAGACGGGCT 61.609 60.000 0.00 0.00 43.26 5.19
6340 8627 8.523915 AATCATCTGCCAAGTATACATTGAAA 57.476 30.769 5.50 0.00 0.00 2.69
6380 8668 4.021544 AGGTGTGACACAAACAACAATTGT 60.022 37.500 18.40 4.92 41.50 2.71
6452 8742 2.441375 TGAAAGTCAGGTGTGATTCCCA 59.559 45.455 0.00 0.00 34.36 4.37
6472 8762 5.823209 TGCTGTGATGGATAATTTCTGTG 57.177 39.130 0.00 0.00 0.00 3.66
6480 8933 4.140536 TGTTGTGTTGCTGTGATGGATAA 58.859 39.130 0.00 0.00 0.00 1.75
6496 8949 3.253188 ACGTCCTTGATTGGATTGTTGTG 59.747 43.478 0.00 0.00 38.52 3.33
6636 9097 2.167281 CCTCAGTTCCATCACGATCTGT 59.833 50.000 0.00 0.00 33.26 3.41
6637 9098 2.167281 ACCTCAGTTCCATCACGATCTG 59.833 50.000 0.00 0.00 32.92 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.