Multiple sequence alignment - TraesCS5A01G078500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G078500 chr5A 100.000 4046 0 0 1 4046 96982598 96986643 0.000000e+00 7472.0
1 TraesCS5A01G078500 chr5A 92.683 328 20 3 102 426 272546675 272546349 1.700000e-128 470.0
2 TraesCS5A01G078500 chr5A 91.092 348 26 4 87 430 317804113 317803767 2.200000e-127 466.0
3 TraesCS5A01G078500 chr5B 95.079 3658 123 27 427 4046 112022145 112018507 0.000000e+00 5705.0
4 TraesCS5A01G078500 chr5B 93.069 101 7 0 1 101 112022237 112022137 9.060000e-32 148.0
5 TraesCS5A01G078500 chr5D 96.239 3164 82 14 797 3932 102332326 102329172 0.000000e+00 5149.0
6 TraesCS5A01G078500 chr5D 90.000 290 14 5 427 706 102332704 102332420 1.070000e-95 361.0
7 TraesCS5A01G078500 chr5D 93.431 137 8 1 3911 4046 102328663 102328527 6.860000e-48 202.0
8 TraesCS5A01G078500 chr5D 95.050 101 4 1 689 788 102332406 102332306 1.510000e-34 158.0
9 TraesCS5A01G078500 chr3B 85.714 1862 242 21 1191 3039 24019166 24017316 0.000000e+00 1943.0
10 TraesCS5A01G078500 chr3B 76.499 1885 375 58 1196 3037 609801992 609803851 0.000000e+00 965.0
11 TraesCS5A01G078500 chr3A 84.631 1978 269 26 1075 3036 19988359 19990317 0.000000e+00 1936.0
12 TraesCS5A01G078500 chr1D 84.890 1906 254 22 1165 3044 32738145 32740042 0.000000e+00 1893.0
13 TraesCS5A01G078500 chr1D 91.254 343 25 4 95 433 52828997 52828656 2.850000e-126 462.0
14 TraesCS5A01G078500 chr1D 87.838 74 3 5 3611 3680 141544727 141544656 9.320000e-12 82.4
15 TraesCS5A01G078500 chr1B 84.307 1918 256 34 1165 3047 50204094 50206001 0.000000e+00 1832.0
16 TraesCS5A01G078500 chr1A 84.038 1892 257 32 1187 3044 31254306 31252426 0.000000e+00 1779.0
17 TraesCS5A01G078500 chr3D 76.789 1887 366 63 1196 3037 460180050 460181909 0.000000e+00 992.0
18 TraesCS5A01G078500 chr7D 90.840 524 28 13 3541 4046 608862399 608861878 0.000000e+00 684.0
19 TraesCS5A01G078500 chr7D 91.740 339 22 4 94 426 454852481 454852143 2.200000e-127 466.0
20 TraesCS5A01G078500 chr7D 86.458 96 10 3 9 102 236640586 236640492 7.150000e-18 102.0
21 TraesCS5A01G078500 chr7D 83.158 95 14 2 9 101 13688682 13688588 7.210000e-13 86.1
22 TraesCS5A01G078500 chr7D 82.796 93 14 2 11 101 13689950 13689858 9.320000e-12 82.4
23 TraesCS5A01G078500 chr7D 81.818 99 16 2 5 101 13692498 13692400 9.320000e-12 82.4
24 TraesCS5A01G078500 chr7D 82.105 95 15 2 9 101 13691224 13691130 3.350000e-11 80.5
25 TraesCS5A01G078500 chr7D 86.842 76 4 4 3602 3673 222749444 222749371 3.350000e-11 80.5
26 TraesCS5A01G078500 chr7A 95.732 328 11 1 102 426 307871619 307871946 3.580000e-145 525.0
27 TraesCS5A01G078500 chr7A 93.009 329 19 3 101 426 552706621 552706948 1.020000e-130 477.0
28 TraesCS5A01G078500 chr7A 88.235 85 7 2 3611 3694 176671840 176671922 9.250000e-17 99.0
29 TraesCS5A01G078500 chr7A 82.407 108 17 2 9 114 251743505 251743398 4.310000e-15 93.5
30 TraesCS5A01G078500 chr6D 93.313 329 18 3 105 429 454473493 454473165 2.190000e-132 483.0
31 TraesCS5A01G078500 chr6D 91.691 337 21 6 102 434 273849726 273849393 1.020000e-125 460.0
32 TraesCS5A01G078500 chr6D 93.750 64 2 2 3611 3674 156733793 156733854 1.200000e-15 95.3
33 TraesCS5A01G078500 chr4D 79.057 721 137 13 1217 1930 348564324 348565037 2.190000e-132 483.0
34 TraesCS5A01G078500 chr4B 78.947 703 134 13 1217 1912 428845454 428846149 2.200000e-127 466.0
35 TraesCS5A01G078500 chr6A 92.097 329 22 3 101 426 93103103 93103430 1.020000e-125 460.0
36 TraesCS5A01G078500 chr4A 78.502 721 141 12 1217 1930 116852147 116851434 1.020000e-125 460.0
37 TraesCS5A01G078500 chr7B 84.259 108 15 2 9 114 213248070 213247963 1.990000e-18 104.0
38 TraesCS5A01G078500 chr6B 91.429 70 1 5 3611 3677 483374194 483374127 1.550000e-14 91.6
39 TraesCS5A01G078500 chr2D 90.411 73 2 4 3611 3680 193155923 193155993 1.550000e-14 91.6
40 TraesCS5A01G078500 chr2A 80.208 96 16 3 9 102 46113060 46113154 7.260000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G078500 chr5A 96982598 96986643 4045 False 7472.0 7472 100.000 1 4046 1 chr5A.!!$F1 4045
1 TraesCS5A01G078500 chr5B 112018507 112022237 3730 True 2926.5 5705 94.074 1 4046 2 chr5B.!!$R1 4045
2 TraesCS5A01G078500 chr5D 102328527 102332704 4177 True 1467.5 5149 93.680 427 4046 4 chr5D.!!$R1 3619
3 TraesCS5A01G078500 chr3B 24017316 24019166 1850 True 1943.0 1943 85.714 1191 3039 1 chr3B.!!$R1 1848
4 TraesCS5A01G078500 chr3B 609801992 609803851 1859 False 965.0 965 76.499 1196 3037 1 chr3B.!!$F1 1841
5 TraesCS5A01G078500 chr3A 19988359 19990317 1958 False 1936.0 1936 84.631 1075 3036 1 chr3A.!!$F1 1961
6 TraesCS5A01G078500 chr1D 32738145 32740042 1897 False 1893.0 1893 84.890 1165 3044 1 chr1D.!!$F1 1879
7 TraesCS5A01G078500 chr1B 50204094 50206001 1907 False 1832.0 1832 84.307 1165 3047 1 chr1B.!!$F1 1882
8 TraesCS5A01G078500 chr1A 31252426 31254306 1880 True 1779.0 1779 84.038 1187 3044 1 chr1A.!!$R1 1857
9 TraesCS5A01G078500 chr3D 460180050 460181909 1859 False 992.0 992 76.789 1196 3037 1 chr3D.!!$F1 1841
10 TraesCS5A01G078500 chr7D 608861878 608862399 521 True 684.0 684 90.840 3541 4046 1 chr7D.!!$R4 505
11 TraesCS5A01G078500 chr4D 348564324 348565037 713 False 483.0 483 79.057 1217 1930 1 chr4D.!!$F1 713
12 TraesCS5A01G078500 chr4B 428845454 428846149 695 False 466.0 466 78.947 1217 1912 1 chr4B.!!$F1 695
13 TraesCS5A01G078500 chr4A 116851434 116852147 713 True 460.0 460 78.502 1217 1930 1 chr4A.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 853 0.034896 TTTCCCTGGCACTCGAGTTC 59.965 55.000 17.26 11.67 0.00 3.01 F
813 856 0.036010 CCCTGGCACTCGAGTTCATT 60.036 55.000 17.26 0.00 0.00 2.57 F
977 1029 1.063412 CGTGTCGCGTCGAAGATCAA 61.063 55.000 5.77 0.00 40.67 2.57 F
1294 1349 1.228490 AAGTCCACCCTCGTCGACT 60.228 57.895 14.70 0.00 41.60 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1914 0.899717 GGATGGGCTTGCCAAACTCA 60.900 55.000 14.04 2.10 0.00 3.41 R
2121 2217 3.941188 AGCACCCACACCTCCACG 61.941 66.667 0.00 0.00 0.00 4.94 R
2589 2685 4.697756 CCCACCATCACGTGCGGT 62.698 66.667 20.08 20.08 32.10 5.68 R
3181 3282 3.270027 TCGGACAATCCACTATGCAAAG 58.730 45.455 0.00 0.00 35.91 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.913137 GTCATTGACCCCAAATTATGTCA 57.087 39.130 5.44 0.00 35.67 3.58
25 26 8.181904 GTCATTGACCCCAAATTATGTCATAT 57.818 34.615 5.44 0.00 37.55 1.78
27 28 9.295825 TCATTGACCCCAAATTATGTCATATAC 57.704 33.333 0.00 0.00 37.55 1.47
59 60 9.384682 GTTAAAATGTCAATGCTTTCCAAATTG 57.615 29.630 0.00 0.00 33.50 2.32
63 64 5.055812 TGTCAATGCTTTCCAAATTGAACC 58.944 37.500 0.00 0.00 40.85 3.62
109 110 9.762381 TCAACAACTATAATATTGGGGAAAACT 57.238 29.630 0.00 0.00 0.00 2.66
122 123 8.902540 ATTGGGGAAAACTTTATTTTTCACTC 57.097 30.769 9.73 2.69 44.88 3.51
123 124 7.669089 TGGGGAAAACTTTATTTTTCACTCT 57.331 32.000 9.73 0.00 44.88 3.24
124 125 8.770010 TGGGGAAAACTTTATTTTTCACTCTA 57.230 30.769 9.73 0.00 44.88 2.43
125 126 8.856103 TGGGGAAAACTTTATTTTTCACTCTAG 58.144 33.333 9.73 0.00 44.88 2.43
126 127 7.813148 GGGGAAAACTTTATTTTTCACTCTAGC 59.187 37.037 9.73 0.00 44.88 3.42
127 128 8.577296 GGGAAAACTTTATTTTTCACTCTAGCT 58.423 33.333 9.79 0.00 43.03 3.32
128 129 9.967346 GGAAAACTTTATTTTTCACTCTAGCTT 57.033 29.630 9.79 0.00 44.18 3.74
147 148 3.614176 GCTTTTGCCTACTTTGCTTATGC 59.386 43.478 0.00 0.00 40.15 3.14
148 149 3.866883 TTTGCCTACTTTGCTTATGCC 57.133 42.857 0.00 0.00 38.71 4.40
149 150 2.505650 TGCCTACTTTGCTTATGCCA 57.494 45.000 0.00 0.00 38.71 4.92
150 151 2.091541 TGCCTACTTTGCTTATGCCAC 58.908 47.619 0.00 0.00 38.71 5.01
151 152 2.290896 TGCCTACTTTGCTTATGCCACT 60.291 45.455 0.00 0.00 38.71 4.00
152 153 2.356069 GCCTACTTTGCTTATGCCACTC 59.644 50.000 0.00 0.00 38.71 3.51
153 154 3.878778 CCTACTTTGCTTATGCCACTCT 58.121 45.455 0.00 0.00 38.71 3.24
154 155 4.683400 GCCTACTTTGCTTATGCCACTCTA 60.683 45.833 0.00 0.00 38.71 2.43
155 156 5.053145 CCTACTTTGCTTATGCCACTCTAG 58.947 45.833 0.00 0.00 38.71 2.43
156 157 4.826274 ACTTTGCTTATGCCACTCTAGA 57.174 40.909 0.00 0.00 38.71 2.43
157 158 5.165961 ACTTTGCTTATGCCACTCTAGAA 57.834 39.130 0.00 0.00 38.71 2.10
158 159 5.749462 ACTTTGCTTATGCCACTCTAGAAT 58.251 37.500 0.00 0.00 38.71 2.40
159 160 6.183347 ACTTTGCTTATGCCACTCTAGAATT 58.817 36.000 0.00 0.00 38.71 2.17
160 161 6.660949 ACTTTGCTTATGCCACTCTAGAATTT 59.339 34.615 0.00 0.00 38.71 1.82
161 162 6.441093 TTGCTTATGCCACTCTAGAATTTG 57.559 37.500 0.00 0.00 38.71 2.32
162 163 5.744171 TGCTTATGCCACTCTAGAATTTGA 58.256 37.500 0.00 0.00 38.71 2.69
163 164 5.586243 TGCTTATGCCACTCTAGAATTTGAC 59.414 40.000 0.00 0.00 38.71 3.18
164 165 5.586243 GCTTATGCCACTCTAGAATTTGACA 59.414 40.000 0.00 0.00 0.00 3.58
165 166 6.261826 GCTTATGCCACTCTAGAATTTGACAT 59.738 38.462 0.00 0.00 0.00 3.06
166 167 7.558161 TTATGCCACTCTAGAATTTGACATG 57.442 36.000 7.37 0.00 0.00 3.21
167 168 4.910195 TGCCACTCTAGAATTTGACATGT 58.090 39.130 0.00 0.00 0.00 3.21
168 169 4.937620 TGCCACTCTAGAATTTGACATGTC 59.062 41.667 19.27 19.27 0.00 3.06
169 170 4.937620 GCCACTCTAGAATTTGACATGTCA 59.062 41.667 24.56 24.56 37.91 3.58
170 171 5.163814 GCCACTCTAGAATTTGACATGTCAC 60.164 44.000 27.88 16.20 39.66 3.67
171 172 6.169094 CCACTCTAGAATTTGACATGTCACT 58.831 40.000 27.88 22.00 39.66 3.41
172 173 6.652481 CCACTCTAGAATTTGACATGTCACTT 59.348 38.462 27.88 22.33 39.66 3.16
173 174 7.173907 CCACTCTAGAATTTGACATGTCACTTT 59.826 37.037 27.88 22.13 39.66 2.66
174 175 8.562892 CACTCTAGAATTTGACATGTCACTTTT 58.437 33.333 27.88 19.78 39.66 2.27
175 176 8.562892 ACTCTAGAATTTGACATGTCACTTTTG 58.437 33.333 27.88 14.26 39.66 2.44
176 177 7.362662 TCTAGAATTTGACATGTCACTTTTGC 58.637 34.615 27.88 14.63 39.66 3.68
177 178 5.291971 AGAATTTGACATGTCACTTTTGCC 58.708 37.500 27.88 12.93 39.66 4.52
178 179 4.669206 ATTTGACATGTCACTTTTGCCA 57.331 36.364 27.88 8.27 39.66 4.92
179 180 3.435105 TTGACATGTCACTTTTGCCAC 57.565 42.857 27.88 0.00 39.66 5.01
180 181 2.653726 TGACATGTCACTTTTGCCACT 58.346 42.857 24.56 0.00 34.14 4.00
181 182 2.618241 TGACATGTCACTTTTGCCACTC 59.382 45.455 24.56 0.00 34.14 3.51
182 183 2.880890 GACATGTCACTTTTGCCACTCT 59.119 45.455 21.07 0.00 0.00 3.24
183 184 3.290710 ACATGTCACTTTTGCCACTCTT 58.709 40.909 0.00 0.00 0.00 2.85
184 185 4.460263 ACATGTCACTTTTGCCACTCTTA 58.540 39.130 0.00 0.00 0.00 2.10
185 186 4.516698 ACATGTCACTTTTGCCACTCTTAG 59.483 41.667 0.00 0.00 0.00 2.18
186 187 4.150897 TGTCACTTTTGCCACTCTTAGT 57.849 40.909 0.00 0.00 0.00 2.24
187 188 4.523083 TGTCACTTTTGCCACTCTTAGTT 58.477 39.130 0.00 0.00 0.00 2.24
188 189 4.947388 TGTCACTTTTGCCACTCTTAGTTT 59.053 37.500 0.00 0.00 0.00 2.66
189 190 5.065988 TGTCACTTTTGCCACTCTTAGTTTC 59.934 40.000 0.00 0.00 0.00 2.78
190 191 5.297029 GTCACTTTTGCCACTCTTAGTTTCT 59.703 40.000 0.00 0.00 0.00 2.52
191 192 5.296780 TCACTTTTGCCACTCTTAGTTTCTG 59.703 40.000 0.00 0.00 0.00 3.02
192 193 5.296780 CACTTTTGCCACTCTTAGTTTCTGA 59.703 40.000 0.00 0.00 0.00 3.27
193 194 5.297029 ACTTTTGCCACTCTTAGTTTCTGAC 59.703 40.000 0.00 0.00 0.00 3.51
194 195 4.415881 TTGCCACTCTTAGTTTCTGACA 57.584 40.909 0.00 0.00 0.00 3.58
195 196 4.415881 TGCCACTCTTAGTTTCTGACAA 57.584 40.909 0.00 0.00 0.00 3.18
196 197 4.973168 TGCCACTCTTAGTTTCTGACAAT 58.027 39.130 0.00 0.00 0.00 2.71
197 198 4.997395 TGCCACTCTTAGTTTCTGACAATC 59.003 41.667 0.00 0.00 0.00 2.67
198 199 5.221722 TGCCACTCTTAGTTTCTGACAATCT 60.222 40.000 0.00 0.00 0.00 2.40
199 200 5.703130 GCCACTCTTAGTTTCTGACAATCTT 59.297 40.000 0.00 0.00 0.00 2.40
200 201 6.128418 GCCACTCTTAGTTTCTGACAATCTTC 60.128 42.308 0.00 0.00 0.00 2.87
201 202 6.931281 CCACTCTTAGTTTCTGACAATCTTCA 59.069 38.462 0.00 0.00 0.00 3.02
202 203 7.095439 CCACTCTTAGTTTCTGACAATCTTCAC 60.095 40.741 0.00 0.00 0.00 3.18
203 204 7.439356 CACTCTTAGTTTCTGACAATCTTCACA 59.561 37.037 0.00 0.00 0.00 3.58
204 205 7.987458 ACTCTTAGTTTCTGACAATCTTCACAA 59.013 33.333 0.00 0.00 0.00 3.33
205 206 8.731275 TCTTAGTTTCTGACAATCTTCACAAA 57.269 30.769 0.00 0.00 0.00 2.83
206 207 9.342308 TCTTAGTTTCTGACAATCTTCACAAAT 57.658 29.630 0.00 0.00 0.00 2.32
207 208 9.390795 CTTAGTTTCTGACAATCTTCACAAATG 57.609 33.333 0.00 0.00 0.00 2.32
208 209 6.211515 AGTTTCTGACAATCTTCACAAATGC 58.788 36.000 0.00 0.00 0.00 3.56
209 210 4.771590 TCTGACAATCTTCACAAATGCC 57.228 40.909 0.00 0.00 0.00 4.40
210 211 4.143543 TCTGACAATCTTCACAAATGCCA 58.856 39.130 0.00 0.00 0.00 4.92
211 212 4.768448 TCTGACAATCTTCACAAATGCCAT 59.232 37.500 0.00 0.00 0.00 4.40
212 213 5.244402 TCTGACAATCTTCACAAATGCCATT 59.756 36.000 0.00 0.00 0.00 3.16
213 214 5.472148 TGACAATCTTCACAAATGCCATTC 58.528 37.500 0.00 0.00 0.00 2.67
214 215 4.824289 ACAATCTTCACAAATGCCATTCC 58.176 39.130 0.00 0.00 0.00 3.01
215 216 3.788333 ATCTTCACAAATGCCATTCCG 57.212 42.857 0.00 0.00 0.00 4.30
216 217 2.513753 TCTTCACAAATGCCATTCCGT 58.486 42.857 0.00 0.00 0.00 4.69
217 218 2.228582 TCTTCACAAATGCCATTCCGTG 59.771 45.455 11.71 11.71 0.00 4.94
225 226 4.985845 CCATTCCGTGGCAAAACC 57.014 55.556 0.00 0.00 42.12 3.27
242 243 7.924940 GGCAAAACCAATAAGTTTTCATTTCA 58.075 30.769 0.00 0.00 45.73 2.69
243 244 7.855409 GGCAAAACCAATAAGTTTTCATTTCAC 59.145 33.333 0.00 0.00 45.73 3.18
244 245 8.611757 GCAAAACCAATAAGTTTTCATTTCACT 58.388 29.630 0.00 0.00 45.73 3.41
249 250 9.665719 ACCAATAAGTTTTCATTTCACTTTTGT 57.334 25.926 0.00 0.00 32.88 2.83
254 255 8.466086 AAGTTTTCATTTCACTTTTGTCACTC 57.534 30.769 0.00 0.00 0.00 3.51
255 256 7.830739 AGTTTTCATTTCACTTTTGTCACTCT 58.169 30.769 0.00 0.00 0.00 3.24
256 257 8.306761 AGTTTTCATTTCACTTTTGTCACTCTT 58.693 29.630 0.00 0.00 0.00 2.85
257 258 9.567848 GTTTTCATTTCACTTTTGTCACTCTTA 57.432 29.630 0.00 0.00 0.00 2.10
258 259 9.787532 TTTTCATTTCACTTTTGTCACTCTTAG 57.212 29.630 0.00 0.00 0.00 2.18
259 260 8.731275 TTCATTTCACTTTTGTCACTCTTAGA 57.269 30.769 0.00 0.00 0.00 2.10
260 261 8.908786 TCATTTCACTTTTGTCACTCTTAGAT 57.091 30.769 0.00 0.00 0.00 1.98
261 262 9.996554 TCATTTCACTTTTGTCACTCTTAGATA 57.003 29.630 0.00 0.00 0.00 1.98
265 266 9.996554 TTCACTTTTGTCACTCTTAGATATTGA 57.003 29.630 0.00 0.00 0.00 2.57
266 267 9.424319 TCACTTTTGTCACTCTTAGATATTGAC 57.576 33.333 10.18 10.18 37.65 3.18
267 268 9.208022 CACTTTTGTCACTCTTAGATATTGACA 57.792 33.333 13.86 13.86 43.65 3.58
283 284 8.355169 AGATATTGACAATGTATCACAATTGCC 58.645 33.333 11.05 0.00 33.99 4.52
284 285 5.718724 TTGACAATGTATCACAATTGCCA 57.281 34.783 5.05 0.00 0.00 4.92
285 286 5.058149 TGACAATGTATCACAATTGCCAC 57.942 39.130 5.05 0.00 0.00 5.01
286 287 4.766373 TGACAATGTATCACAATTGCCACT 59.234 37.500 5.05 0.00 0.00 4.00
287 288 5.106197 TGACAATGTATCACAATTGCCACTC 60.106 40.000 5.05 0.00 0.00 3.51
288 289 5.012239 ACAATGTATCACAATTGCCACTCT 58.988 37.500 5.05 0.00 0.00 3.24
289 290 6.179756 ACAATGTATCACAATTGCCACTCTA 58.820 36.000 5.05 0.00 0.00 2.43
290 291 6.658816 ACAATGTATCACAATTGCCACTCTAA 59.341 34.615 5.05 0.00 0.00 2.10
291 292 7.176515 ACAATGTATCACAATTGCCACTCTAAA 59.823 33.333 5.05 0.00 0.00 1.85
292 293 7.701539 ATGTATCACAATTGCCACTCTAAAA 57.298 32.000 5.05 0.00 0.00 1.52
293 294 7.701539 TGTATCACAATTGCCACTCTAAAAT 57.298 32.000 5.05 0.00 0.00 1.82
294 295 8.121305 TGTATCACAATTGCCACTCTAAAATT 57.879 30.769 5.05 0.00 0.00 1.82
295 296 9.237187 TGTATCACAATTGCCACTCTAAAATTA 57.763 29.630 5.05 0.00 0.00 1.40
298 299 8.984891 TCACAATTGCCACTCTAAAATTATTG 57.015 30.769 5.05 0.00 0.00 1.90
299 300 7.545265 TCACAATTGCCACTCTAAAATTATTGC 59.455 33.333 5.05 0.00 0.00 3.56
300 301 7.546667 CACAATTGCCACTCTAAAATTATTGCT 59.453 33.333 5.05 0.00 0.00 3.91
301 302 8.096414 ACAATTGCCACTCTAAAATTATTGCTT 58.904 29.630 5.05 0.00 0.00 3.91
302 303 8.938906 CAATTGCCACTCTAAAATTATTGCTTT 58.061 29.630 0.00 0.00 0.00 3.51
303 304 9.506018 AATTGCCACTCTAAAATTATTGCTTTT 57.494 25.926 0.00 0.00 0.00 2.27
304 305 7.887996 TGCCACTCTAAAATTATTGCTTTTG 57.112 32.000 0.00 0.00 0.00 2.44
306 307 6.183360 GCCACTCTAAAATTATTGCTTTTGCC 60.183 38.462 0.00 0.00 46.87 4.52
307 308 6.873076 CCACTCTAAAATTATTGCTTTTGCCA 59.127 34.615 0.00 0.00 46.87 4.92
308 309 7.148590 CCACTCTAAAATTATTGCTTTTGCCAC 60.149 37.037 0.00 0.00 46.87 5.01
309 310 7.384660 CACTCTAAAATTATTGCTTTTGCCACA 59.615 33.333 0.00 0.00 46.87 4.17
310 311 8.096414 ACTCTAAAATTATTGCTTTTGCCACAT 58.904 29.630 0.00 0.00 46.87 3.21
311 312 9.585099 CTCTAAAATTATTGCTTTTGCCACATA 57.415 29.630 0.00 0.00 46.87 2.29
312 313 9.935241 TCTAAAATTATTGCTTTTGCCACATAA 57.065 25.926 0.00 0.00 46.87 1.90
329 330 7.692460 CCACATAATGGCAATAGTGATGTAT 57.308 36.000 12.34 0.00 43.24 2.29
330 331 8.114331 CCACATAATGGCAATAGTGATGTATT 57.886 34.615 12.34 0.00 43.24 1.89
331 332 8.024865 CCACATAATGGCAATAGTGATGTATTG 58.975 37.037 12.34 0.17 43.24 1.90
332 333 8.570488 CACATAATGGCAATAGTGATGTATTGT 58.430 33.333 0.00 0.00 40.93 2.71
333 334 8.786898 ACATAATGGCAATAGTGATGTATTGTC 58.213 33.333 0.00 2.01 42.81 3.18
337 338 7.459795 TGGCAATAGTGATGTATTGTCAAAA 57.540 32.000 8.14 0.00 46.83 2.44
338 339 7.890515 TGGCAATAGTGATGTATTGTCAAAAA 58.109 30.769 8.14 0.00 46.83 1.94
339 340 7.812191 TGGCAATAGTGATGTATTGTCAAAAAC 59.188 33.333 8.14 0.00 46.83 2.43
340 341 8.028938 GGCAATAGTGATGTATTGTCAAAAACT 58.971 33.333 0.00 0.00 42.29 2.66
346 347 9.561069 AGTGATGTATTGTCAAAAACTAAGAGT 57.439 29.630 0.00 0.00 0.00 3.24
347 348 9.599322 GTGATGTATTGTCAAAAACTAAGAGTG 57.401 33.333 0.00 0.00 0.00 3.51
348 349 9.554395 TGATGTATTGTCAAAAACTAAGAGTGA 57.446 29.630 0.00 0.00 0.00 3.41
349 350 9.813080 GATGTATTGTCAAAAACTAAGAGTGAC 57.187 33.333 0.00 0.00 39.22 3.67
350 351 8.725405 TGTATTGTCAAAAACTAAGAGTGACA 57.275 30.769 0.85 0.85 45.03 3.58
355 356 8.106247 TGTCAAAAACTAAGAGTGACAAAAGT 57.894 30.769 2.48 0.00 44.06 2.66
356 357 9.221933 TGTCAAAAACTAAGAGTGACAAAAGTA 57.778 29.630 2.48 0.00 44.06 2.24
377 378 9.442047 AAAGTAAAATGTCAGATTCTAGAGTGG 57.558 33.333 0.00 0.00 0.00 4.00
378 379 7.044798 AGTAAAATGTCAGATTCTAGAGTGGC 58.955 38.462 0.00 0.00 0.00 5.01
379 380 5.426689 AAATGTCAGATTCTAGAGTGGCA 57.573 39.130 8.15 8.15 0.00 4.92
380 381 5.627182 AATGTCAGATTCTAGAGTGGCAT 57.373 39.130 11.25 11.25 36.82 4.40
381 382 6.737720 AATGTCAGATTCTAGAGTGGCATA 57.262 37.500 15.39 0.00 34.18 3.14
382 383 6.737720 ATGTCAGATTCTAGAGTGGCATAA 57.262 37.500 14.10 0.00 33.53 1.90
383 384 6.544928 TGTCAGATTCTAGAGTGGCATAAA 57.455 37.500 0.00 0.00 0.00 1.40
384 385 6.341316 TGTCAGATTCTAGAGTGGCATAAAC 58.659 40.000 0.00 0.00 0.00 2.01
385 386 6.070824 TGTCAGATTCTAGAGTGGCATAAACA 60.071 38.462 0.00 0.00 0.00 2.83
386 387 6.818644 GTCAGATTCTAGAGTGGCATAAACAA 59.181 38.462 0.00 0.00 0.00 2.83
387 388 7.334421 GTCAGATTCTAGAGTGGCATAAACAAA 59.666 37.037 0.00 0.00 0.00 2.83
388 389 7.550551 TCAGATTCTAGAGTGGCATAAACAAAG 59.449 37.037 0.00 0.00 0.00 2.77
389 390 7.335422 CAGATTCTAGAGTGGCATAAACAAAGT 59.665 37.037 0.00 0.00 0.00 2.66
390 391 6.801539 TTCTAGAGTGGCATAAACAAAGTG 57.198 37.500 0.00 0.00 0.00 3.16
391 392 6.109156 TCTAGAGTGGCATAAACAAAGTGA 57.891 37.500 0.00 0.00 0.00 3.41
392 393 6.711277 TCTAGAGTGGCATAAACAAAGTGAT 58.289 36.000 0.00 0.00 0.00 3.06
393 394 5.886960 AGAGTGGCATAAACAAAGTGATC 57.113 39.130 0.00 0.00 0.00 2.92
394 395 5.316167 AGAGTGGCATAAACAAAGTGATCA 58.684 37.500 0.00 0.00 0.00 2.92
395 396 5.769662 AGAGTGGCATAAACAAAGTGATCAA 59.230 36.000 0.00 0.00 0.00 2.57
396 397 6.265196 AGAGTGGCATAAACAAAGTGATCAAA 59.735 34.615 0.00 0.00 0.00 2.69
397 398 6.815089 AGTGGCATAAACAAAGTGATCAAAA 58.185 32.000 0.00 0.00 0.00 2.44
398 399 6.925165 AGTGGCATAAACAAAGTGATCAAAAG 59.075 34.615 0.00 0.00 0.00 2.27
399 400 5.695816 TGGCATAAACAAAGTGATCAAAAGC 59.304 36.000 0.00 0.00 0.00 3.51
400 401 5.928264 GGCATAAACAAAGTGATCAAAAGCT 59.072 36.000 0.00 0.00 0.00 3.74
401 402 7.090173 GGCATAAACAAAGTGATCAAAAGCTA 58.910 34.615 0.00 0.00 0.00 3.32
402 403 7.274250 GGCATAAACAAAGTGATCAAAAGCTAG 59.726 37.037 0.00 0.00 0.00 3.42
403 404 8.023128 GCATAAACAAAGTGATCAAAAGCTAGA 58.977 33.333 0.00 0.00 0.00 2.43
404 405 9.552114 CATAAACAAAGTGATCAAAAGCTAGAG 57.448 33.333 0.00 0.00 0.00 2.43
405 406 7.573968 AAACAAAGTGATCAAAAGCTAGAGT 57.426 32.000 0.00 0.00 0.00 3.24
406 407 6.551385 ACAAAGTGATCAAAAGCTAGAGTG 57.449 37.500 0.00 0.00 0.00 3.51
407 408 5.471456 ACAAAGTGATCAAAAGCTAGAGTGG 59.529 40.000 0.00 0.00 0.00 4.00
408 409 3.604582 AGTGATCAAAAGCTAGAGTGGC 58.395 45.455 0.00 0.00 0.00 5.01
409 410 3.008375 AGTGATCAAAAGCTAGAGTGGCA 59.992 43.478 0.00 0.00 0.00 4.92
410 411 3.753272 GTGATCAAAAGCTAGAGTGGCAA 59.247 43.478 0.00 0.00 0.00 4.52
411 412 4.216257 GTGATCAAAAGCTAGAGTGGCAAA 59.784 41.667 0.00 0.00 0.00 3.68
412 413 4.826733 TGATCAAAAGCTAGAGTGGCAAAA 59.173 37.500 0.00 0.00 0.00 2.44
413 414 5.301551 TGATCAAAAGCTAGAGTGGCAAAAA 59.698 36.000 0.00 0.00 0.00 1.94
414 415 4.932146 TCAAAAGCTAGAGTGGCAAAAAC 58.068 39.130 0.00 0.00 0.00 2.43
415 416 4.400884 TCAAAAGCTAGAGTGGCAAAAACA 59.599 37.500 0.00 0.00 0.00 2.83
416 417 5.105554 TCAAAAGCTAGAGTGGCAAAAACAA 60.106 36.000 0.00 0.00 0.00 2.83
417 418 5.337578 AAAGCTAGAGTGGCAAAAACAAA 57.662 34.783 0.00 0.00 0.00 2.83
418 419 4.574599 AGCTAGAGTGGCAAAAACAAAG 57.425 40.909 0.00 0.00 0.00 2.77
419 420 3.954258 AGCTAGAGTGGCAAAAACAAAGT 59.046 39.130 0.00 0.00 0.00 2.66
420 421 4.402474 AGCTAGAGTGGCAAAAACAAAGTT 59.598 37.500 0.00 0.00 0.00 2.66
421 422 5.105351 AGCTAGAGTGGCAAAAACAAAGTTT 60.105 36.000 0.00 0.00 0.00 2.66
422 423 5.580691 GCTAGAGTGGCAAAAACAAAGTTTT 59.419 36.000 0.00 2.26 0.00 2.43
423 424 6.237835 GCTAGAGTGGCAAAAACAAAGTTTTC 60.238 38.462 8.16 0.00 0.00 2.29
424 425 4.935205 AGAGTGGCAAAAACAAAGTTTTCC 59.065 37.500 8.16 7.10 0.00 3.13
425 426 4.006989 AGTGGCAAAAACAAAGTTTTCCC 58.993 39.130 8.16 11.39 0.00 3.97
782 825 1.333177 AACTCTGGCACTCGAGTTCT 58.667 50.000 17.26 0.00 44.71 3.01
783 826 1.333177 ACTCTGGCACTCGAGTTCTT 58.667 50.000 17.26 0.00 37.19 2.52
788 831 1.939934 TGGCACTCGAGTTCTTTTGTG 59.060 47.619 17.26 3.90 0.00 3.33
790 833 1.334149 GCACTCGAGTTCTTTTGTGCC 60.334 52.381 17.26 0.00 43.16 5.01
792 835 2.614057 CACTCGAGTTCTTTTGTGCCTT 59.386 45.455 17.26 0.00 0.00 4.35
794 837 3.312697 ACTCGAGTTCTTTTGTGCCTTTC 59.687 43.478 13.58 0.00 0.00 2.62
796 839 2.287608 CGAGTTCTTTTGTGCCTTTCCC 60.288 50.000 0.00 0.00 0.00 3.97
798 841 2.695147 AGTTCTTTTGTGCCTTTCCCTG 59.305 45.455 0.00 0.00 0.00 4.45
806 849 3.068881 CCTTTCCCTGGCACTCGA 58.931 61.111 0.00 0.00 0.00 4.04
809 852 0.035458 CTTTCCCTGGCACTCGAGTT 59.965 55.000 17.26 0.00 0.00 3.01
810 853 0.034896 TTTCCCTGGCACTCGAGTTC 59.965 55.000 17.26 11.67 0.00 3.01
811 854 1.118965 TTCCCTGGCACTCGAGTTCA 61.119 55.000 17.26 15.91 0.00 3.18
812 855 0.904865 TCCCTGGCACTCGAGTTCAT 60.905 55.000 17.26 0.00 0.00 2.57
813 856 0.036010 CCCTGGCACTCGAGTTCATT 60.036 55.000 17.26 0.00 0.00 2.57
815 858 2.271800 CCTGGCACTCGAGTTCATTAC 58.728 52.381 17.26 0.00 0.00 1.89
927 974 2.715758 CGTACACGCACGTACACAT 58.284 52.632 11.87 0.00 41.55 3.21
965 1012 2.574736 GAGCTCTCGTCGTGTCGC 60.575 66.667 6.43 0.00 0.00 5.19
977 1029 1.063412 CGTGTCGCGTCGAAGATCAA 61.063 55.000 5.77 0.00 40.67 2.57
1294 1349 1.228490 AAGTCCACCCTCGTCGACT 60.228 57.895 14.70 0.00 41.60 4.18
1395 1450 2.549198 CGCCATCTCCGCCTACGTA 61.549 63.158 0.00 0.00 37.70 3.57
1791 1848 2.908015 GGCATCCTTGGCCGTCTA 59.092 61.111 0.00 0.00 42.39 2.59
1857 1914 1.777272 GGCCTCATACCCTTCTTCCAT 59.223 52.381 0.00 0.00 0.00 3.41
1863 1920 5.339530 CCTCATACCCTTCTTCCATGAGTTT 60.340 44.000 0.00 0.00 40.54 2.66
2589 2685 2.601067 TTCCTGTCGGCGGTGGTA 60.601 61.111 7.21 0.00 0.00 3.25
3096 3195 7.995289 TGCTCTGTTTCTTCTCAAATACAAAA 58.005 30.769 0.00 0.00 0.00 2.44
3181 3282 2.770164 TCTCTAGGTGCTTTTCAGCC 57.230 50.000 0.00 0.00 46.74 4.85
3241 3342 1.697432 CTGTGTCCCAAGTCCTACCAA 59.303 52.381 0.00 0.00 0.00 3.67
3281 3382 8.490311 ACCCAACTCAATTCCTTTTGAATAAAA 58.510 29.630 0.00 0.00 42.97 1.52
3313 3414 7.787725 TGACCTTCACTTACTCTTTCTTTTC 57.212 36.000 0.00 0.00 0.00 2.29
3314 3415 7.335627 TGACCTTCACTTACTCTTTCTTTTCA 58.664 34.615 0.00 0.00 0.00 2.69
3315 3416 7.993183 TGACCTTCACTTACTCTTTCTTTTCAT 59.007 33.333 0.00 0.00 0.00 2.57
3316 3417 8.384607 ACCTTCACTTACTCTTTCTTTTCATC 57.615 34.615 0.00 0.00 0.00 2.92
3317 3418 7.993183 ACCTTCACTTACTCTTTCTTTTCATCA 59.007 33.333 0.00 0.00 0.00 3.07
3318 3419 9.007901 CCTTCACTTACTCTTTCTTTTCATCAT 57.992 33.333 0.00 0.00 0.00 2.45
3321 3422 8.712363 TCACTTACTCTTTCTTTTCATCATTCG 58.288 33.333 0.00 0.00 0.00 3.34
3323 3424 7.389053 ACTTACTCTTTCTTTTCATCATTCGCT 59.611 33.333 0.00 0.00 0.00 4.93
3324 3425 5.936054 ACTCTTTCTTTTCATCATTCGCTG 58.064 37.500 0.00 0.00 0.00 5.18
3521 3636 5.219633 CCCAACTTCCAGAATTTTAACACG 58.780 41.667 0.00 0.00 0.00 4.49
3589 3704 8.990163 TCAAATCCAAAATATTACTACTCCCC 57.010 34.615 0.00 0.00 0.00 4.81
3590 3705 8.002459 TCAAATCCAAAATATTACTACTCCCCC 58.998 37.037 0.00 0.00 0.00 5.40
3608 3723 4.159244 CCCCCGATCCATTTTACTTGTA 57.841 45.455 0.00 0.00 0.00 2.41
3695 3818 8.715191 ACAATTGCATGTCTTACAAAGAAAAA 57.285 26.923 5.05 0.00 39.67 1.94
3746 3869 7.517614 AGAGTATTCGTCACATGACATAGAT 57.482 36.000 12.32 3.12 44.99 1.98
3753 3876 6.681777 TCGTCACATGACATAGATGATAAGG 58.318 40.000 12.32 0.00 44.99 2.69
3760 3883 9.593565 ACATGACATAGATGATAAGGAACTCTA 57.406 33.333 0.00 0.00 38.49 2.43
3847 3971 6.206634 GTGGACACTGGAAACATATTTGAAGA 59.793 38.462 0.00 0.00 41.51 2.87
4007 4667 8.855110 ACAATCTATGTCATTCGATTAGAGACT 58.145 33.333 8.75 0.00 37.96 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.823647 TTTGGAAAGCATTGACATTTTAACTAA 57.176 25.926 0.00 0.00 0.00 2.24
96 97 9.990360 GAGTGAAAAATAAAGTTTTCCCCAATA 57.010 29.630 11.73 0.00 43.76 1.90
97 98 8.713971 AGAGTGAAAAATAAAGTTTTCCCCAAT 58.286 29.630 11.73 0.00 43.76 3.16
98 99 8.084985 AGAGTGAAAAATAAAGTTTTCCCCAA 57.915 30.769 11.73 0.00 43.76 4.12
99 100 7.669089 AGAGTGAAAAATAAAGTTTTCCCCA 57.331 32.000 11.73 0.00 43.76 4.96
100 101 7.813148 GCTAGAGTGAAAAATAAAGTTTTCCCC 59.187 37.037 11.73 4.48 43.76 4.81
101 102 8.577296 AGCTAGAGTGAAAAATAAAGTTTTCCC 58.423 33.333 11.73 2.42 43.76 3.97
102 103 9.967346 AAGCTAGAGTGAAAAATAAAGTTTTCC 57.033 29.630 11.73 5.14 43.76 3.13
106 107 9.249457 GCAAAAGCTAGAGTGAAAAATAAAGTT 57.751 29.630 0.00 0.00 0.00 2.66
107 108 7.867909 GGCAAAAGCTAGAGTGAAAAATAAAGT 59.132 33.333 0.00 0.00 0.00 2.66
108 109 8.084684 AGGCAAAAGCTAGAGTGAAAAATAAAG 58.915 33.333 0.00 0.00 0.00 1.85
109 110 7.951591 AGGCAAAAGCTAGAGTGAAAAATAAA 58.048 30.769 0.00 0.00 0.00 1.40
110 111 7.524717 AGGCAAAAGCTAGAGTGAAAAATAA 57.475 32.000 0.00 0.00 0.00 1.40
111 112 7.883311 AGTAGGCAAAAGCTAGAGTGAAAAATA 59.117 33.333 0.00 0.00 0.00 1.40
112 113 6.717084 AGTAGGCAAAAGCTAGAGTGAAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
113 114 6.062095 AGTAGGCAAAAGCTAGAGTGAAAAA 58.938 36.000 0.00 0.00 0.00 1.94
114 115 5.621193 AGTAGGCAAAAGCTAGAGTGAAAA 58.379 37.500 0.00 0.00 0.00 2.29
115 116 5.228945 AGTAGGCAAAAGCTAGAGTGAAA 57.771 39.130 0.00 0.00 0.00 2.69
116 117 4.891992 AGTAGGCAAAAGCTAGAGTGAA 57.108 40.909 0.00 0.00 0.00 3.18
117 118 4.891992 AAGTAGGCAAAAGCTAGAGTGA 57.108 40.909 0.00 0.00 0.00 3.41
118 119 4.378874 GCAAAGTAGGCAAAAGCTAGAGTG 60.379 45.833 0.00 0.00 0.00 3.51
119 120 3.753797 GCAAAGTAGGCAAAAGCTAGAGT 59.246 43.478 0.00 0.00 0.00 3.24
120 121 4.006319 AGCAAAGTAGGCAAAAGCTAGAG 58.994 43.478 0.00 0.00 0.00 2.43
121 122 4.021102 AGCAAAGTAGGCAAAAGCTAGA 57.979 40.909 0.00 0.00 0.00 2.43
122 123 4.773323 AAGCAAAGTAGGCAAAAGCTAG 57.227 40.909 0.00 0.00 0.00 3.42
123 124 5.393027 GCATAAGCAAAGTAGGCAAAAGCTA 60.393 40.000 0.00 0.00 41.58 3.32
124 125 4.619160 GCATAAGCAAAGTAGGCAAAAGCT 60.619 41.667 0.00 0.00 41.58 3.74
125 126 3.614176 GCATAAGCAAAGTAGGCAAAAGC 59.386 43.478 0.00 0.00 41.58 3.51
126 127 4.176271 GGCATAAGCAAAGTAGGCAAAAG 58.824 43.478 0.00 0.00 44.61 2.27
127 128 3.576118 TGGCATAAGCAAAGTAGGCAAAA 59.424 39.130 0.00 0.00 44.61 2.44
128 129 3.056891 GTGGCATAAGCAAAGTAGGCAAA 60.057 43.478 0.00 0.00 44.61 3.68
129 130 2.491693 GTGGCATAAGCAAAGTAGGCAA 59.508 45.455 0.00 0.00 44.61 4.52
130 131 2.091541 GTGGCATAAGCAAAGTAGGCA 58.908 47.619 0.00 0.00 44.61 4.75
131 132 2.356069 GAGTGGCATAAGCAAAGTAGGC 59.644 50.000 0.00 0.00 44.61 3.93
132 133 3.878778 AGAGTGGCATAAGCAAAGTAGG 58.121 45.455 0.00 0.00 44.61 3.18
133 134 5.907207 TCTAGAGTGGCATAAGCAAAGTAG 58.093 41.667 0.00 0.00 44.61 2.57
134 135 5.932619 TCTAGAGTGGCATAAGCAAAGTA 57.067 39.130 0.00 0.00 44.61 2.24
135 136 4.826274 TCTAGAGTGGCATAAGCAAAGT 57.174 40.909 0.00 0.00 44.61 2.66
136 137 6.690194 AATTCTAGAGTGGCATAAGCAAAG 57.310 37.500 0.00 0.00 44.61 2.77
137 138 6.658816 TCAAATTCTAGAGTGGCATAAGCAAA 59.341 34.615 0.00 0.00 44.61 3.68
138 139 6.094048 GTCAAATTCTAGAGTGGCATAAGCAA 59.906 38.462 0.00 0.00 44.61 3.91
139 140 5.586243 GTCAAATTCTAGAGTGGCATAAGCA 59.414 40.000 0.00 0.00 44.61 3.91
140 141 5.586243 TGTCAAATTCTAGAGTGGCATAAGC 59.414 40.000 3.98 0.00 41.10 3.09
141 142 7.281774 ACATGTCAAATTCTAGAGTGGCATAAG 59.718 37.037 15.69 9.90 34.18 1.73
142 143 7.112122 ACATGTCAAATTCTAGAGTGGCATAA 58.888 34.615 15.69 0.00 34.18 1.90
143 144 6.653020 ACATGTCAAATTCTAGAGTGGCATA 58.347 36.000 15.69 0.00 34.18 3.14
144 145 5.503927 ACATGTCAAATTCTAGAGTGGCAT 58.496 37.500 12.12 12.12 36.78 4.40
145 146 4.910195 ACATGTCAAATTCTAGAGTGGCA 58.090 39.130 9.14 9.14 0.00 4.92
146 147 4.937620 TGACATGTCAAATTCTAGAGTGGC 59.062 41.667 26.02 0.00 36.53 5.01
147 148 6.169094 AGTGACATGTCAAATTCTAGAGTGG 58.831 40.000 29.42 0.00 41.85 4.00
148 149 7.664082 AAGTGACATGTCAAATTCTAGAGTG 57.336 36.000 29.42 0.00 41.85 3.51
149 150 8.562892 CAAAAGTGACATGTCAAATTCTAGAGT 58.437 33.333 29.42 9.01 41.85 3.24
150 151 7.536622 GCAAAAGTGACATGTCAAATTCTAGAG 59.463 37.037 29.42 14.87 41.85 2.43
151 152 7.362662 GCAAAAGTGACATGTCAAATTCTAGA 58.637 34.615 29.42 1.05 41.85 2.43
152 153 6.583806 GGCAAAAGTGACATGTCAAATTCTAG 59.416 38.462 29.42 18.60 41.85 2.43
153 154 6.040278 TGGCAAAAGTGACATGTCAAATTCTA 59.960 34.615 29.42 11.95 38.09 2.10
154 155 5.163426 TGGCAAAAGTGACATGTCAAATTCT 60.163 36.000 29.42 19.00 38.09 2.40
155 156 5.049167 TGGCAAAAGTGACATGTCAAATTC 58.951 37.500 29.42 17.04 38.09 2.17
156 157 5.021033 TGGCAAAAGTGACATGTCAAATT 57.979 34.783 29.42 22.66 38.09 1.82
157 158 4.669206 TGGCAAAAGTGACATGTCAAAT 57.331 36.364 29.42 18.31 38.09 2.32
165 166 4.150897 ACTAAGAGTGGCAAAAGTGACA 57.849 40.909 0.00 0.00 41.98 3.58
166 167 5.297029 AGAAACTAAGAGTGGCAAAAGTGAC 59.703 40.000 0.00 0.00 0.00 3.67
167 168 5.296780 CAGAAACTAAGAGTGGCAAAAGTGA 59.703 40.000 0.00 0.00 0.00 3.41
168 169 5.296780 TCAGAAACTAAGAGTGGCAAAAGTG 59.703 40.000 0.00 0.00 0.00 3.16
169 170 5.297029 GTCAGAAACTAAGAGTGGCAAAAGT 59.703 40.000 0.00 0.00 0.00 2.66
170 171 5.296780 TGTCAGAAACTAAGAGTGGCAAAAG 59.703 40.000 0.00 0.00 0.00 2.27
171 172 5.189928 TGTCAGAAACTAAGAGTGGCAAAA 58.810 37.500 0.00 0.00 0.00 2.44
172 173 4.776349 TGTCAGAAACTAAGAGTGGCAAA 58.224 39.130 0.00 0.00 0.00 3.68
173 174 4.415881 TGTCAGAAACTAAGAGTGGCAA 57.584 40.909 0.00 0.00 0.00 4.52
174 175 4.415881 TTGTCAGAAACTAAGAGTGGCA 57.584 40.909 0.00 0.00 0.00 4.92
175 176 5.241662 AGATTGTCAGAAACTAAGAGTGGC 58.758 41.667 0.00 0.00 0.00 5.01
176 177 6.931281 TGAAGATTGTCAGAAACTAAGAGTGG 59.069 38.462 0.00 0.00 0.00 4.00
177 178 7.439356 TGTGAAGATTGTCAGAAACTAAGAGTG 59.561 37.037 0.00 0.00 0.00 3.51
178 179 7.500992 TGTGAAGATTGTCAGAAACTAAGAGT 58.499 34.615 0.00 0.00 0.00 3.24
179 180 7.953158 TGTGAAGATTGTCAGAAACTAAGAG 57.047 36.000 0.00 0.00 0.00 2.85
180 181 8.731275 TTTGTGAAGATTGTCAGAAACTAAGA 57.269 30.769 0.00 0.00 36.26 2.10
181 182 9.390795 CATTTGTGAAGATTGTCAGAAACTAAG 57.609 33.333 0.27 0.00 41.79 2.18
182 183 7.862372 GCATTTGTGAAGATTGTCAGAAACTAA 59.138 33.333 0.27 0.00 41.79 2.24
183 184 7.362662 GCATTTGTGAAGATTGTCAGAAACTA 58.637 34.615 0.27 0.00 41.79 2.24
184 185 6.211515 GCATTTGTGAAGATTGTCAGAAACT 58.788 36.000 0.27 0.00 41.79 2.66
185 186 5.403466 GGCATTTGTGAAGATTGTCAGAAAC 59.597 40.000 0.27 0.00 41.79 2.78
186 187 5.068855 TGGCATTTGTGAAGATTGTCAGAAA 59.931 36.000 0.73 0.73 42.77 2.52
187 188 4.583907 TGGCATTTGTGAAGATTGTCAGAA 59.416 37.500 0.00 0.00 0.00 3.02
188 189 4.143543 TGGCATTTGTGAAGATTGTCAGA 58.856 39.130 0.00 0.00 0.00 3.27
189 190 4.508461 TGGCATTTGTGAAGATTGTCAG 57.492 40.909 0.00 0.00 0.00 3.51
190 191 5.471556 AATGGCATTTGTGAAGATTGTCA 57.528 34.783 6.96 0.00 0.00 3.58
191 192 4.866486 GGAATGGCATTTGTGAAGATTGTC 59.134 41.667 14.93 0.00 0.00 3.18
192 193 4.618927 CGGAATGGCATTTGTGAAGATTGT 60.619 41.667 14.93 0.00 0.00 2.71
193 194 3.861113 CGGAATGGCATTTGTGAAGATTG 59.139 43.478 14.93 0.00 0.00 2.67
194 195 3.511146 ACGGAATGGCATTTGTGAAGATT 59.489 39.130 14.93 0.00 0.00 2.40
195 196 3.091545 ACGGAATGGCATTTGTGAAGAT 58.908 40.909 14.93 0.00 0.00 2.40
196 197 2.228582 CACGGAATGGCATTTGTGAAGA 59.771 45.455 28.30 0.00 33.45 2.87
197 198 2.598589 CACGGAATGGCATTTGTGAAG 58.401 47.619 28.30 14.47 33.45 3.02
198 199 1.271934 CCACGGAATGGCATTTGTGAA 59.728 47.619 31.34 0.00 43.24 3.18
199 200 0.887247 CCACGGAATGGCATTTGTGA 59.113 50.000 31.34 0.00 43.24 3.58
200 201 3.422122 CCACGGAATGGCATTTGTG 57.578 52.632 26.64 26.64 43.24 3.33
216 217 7.554118 TGAAATGAAAACTTATTGGTTTTGCCA 59.446 29.630 9.56 4.11 45.62 4.92
217 218 7.855409 GTGAAATGAAAACTTATTGGTTTTGCC 59.145 33.333 9.56 0.00 45.62 4.52
218 219 8.611757 AGTGAAATGAAAACTTATTGGTTTTGC 58.388 29.630 9.56 3.79 45.62 3.68
223 224 9.665719 ACAAAAGTGAAATGAAAACTTATTGGT 57.334 25.926 0.00 0.00 33.09 3.67
228 229 9.567848 GAGTGACAAAAGTGAAATGAAAACTTA 57.432 29.630 0.00 0.00 33.09 2.24
229 230 8.306761 AGAGTGACAAAAGTGAAATGAAAACTT 58.693 29.630 0.00 0.00 35.70 2.66
230 231 7.830739 AGAGTGACAAAAGTGAAATGAAAACT 58.169 30.769 0.00 0.00 0.00 2.66
231 232 8.466086 AAGAGTGACAAAAGTGAAATGAAAAC 57.534 30.769 0.00 0.00 0.00 2.43
232 233 9.787532 CTAAGAGTGACAAAAGTGAAATGAAAA 57.212 29.630 0.00 0.00 0.00 2.29
233 234 9.173021 TCTAAGAGTGACAAAAGTGAAATGAAA 57.827 29.630 0.00 0.00 0.00 2.69
234 235 8.731275 TCTAAGAGTGACAAAAGTGAAATGAA 57.269 30.769 0.00 0.00 0.00 2.57
235 236 8.908786 ATCTAAGAGTGACAAAAGTGAAATGA 57.091 30.769 0.00 0.00 0.00 2.57
239 240 9.996554 TCAATATCTAAGAGTGACAAAAGTGAA 57.003 29.630 0.00 0.00 0.00 3.18
240 241 9.424319 GTCAATATCTAAGAGTGACAAAAGTGA 57.576 33.333 6.20 0.00 38.74 3.41
241 242 9.208022 TGTCAATATCTAAGAGTGACAAAAGTG 57.792 33.333 9.97 0.00 44.06 3.16
257 258 8.355169 GGCAATTGTGATACATTGTCAATATCT 58.645 33.333 7.40 0.00 0.00 1.98
258 259 8.136800 TGGCAATTGTGATACATTGTCAATATC 58.863 33.333 7.40 0.00 32.55 1.63
259 260 7.922278 GTGGCAATTGTGATACATTGTCAATAT 59.078 33.333 7.40 0.00 35.08 1.28
260 261 7.122501 AGTGGCAATTGTGATACATTGTCAATA 59.877 33.333 7.40 0.00 35.08 1.90
261 262 6.071221 AGTGGCAATTGTGATACATTGTCAAT 60.071 34.615 7.40 0.00 35.08 2.57
262 263 5.243507 AGTGGCAATTGTGATACATTGTCAA 59.756 36.000 7.40 0.00 35.08 3.18
263 264 4.766373 AGTGGCAATTGTGATACATTGTCA 59.234 37.500 7.40 0.00 32.81 3.58
264 265 5.124457 AGAGTGGCAATTGTGATACATTGTC 59.876 40.000 7.40 0.00 0.00 3.18
265 266 5.012239 AGAGTGGCAATTGTGATACATTGT 58.988 37.500 7.40 0.00 0.00 2.71
266 267 5.571784 AGAGTGGCAATTGTGATACATTG 57.428 39.130 7.40 0.00 0.00 2.82
267 268 7.701539 TTTAGAGTGGCAATTGTGATACATT 57.298 32.000 7.40 0.00 0.00 2.71
268 269 7.701539 TTTTAGAGTGGCAATTGTGATACAT 57.298 32.000 7.40 0.00 0.00 2.29
269 270 7.701539 ATTTTAGAGTGGCAATTGTGATACA 57.298 32.000 7.40 0.00 0.00 2.29
272 273 9.590451 CAATAATTTTAGAGTGGCAATTGTGAT 57.410 29.630 7.40 0.00 0.00 3.06
273 274 7.545265 GCAATAATTTTAGAGTGGCAATTGTGA 59.455 33.333 7.40 0.00 0.00 3.58
274 275 7.546667 AGCAATAATTTTAGAGTGGCAATTGTG 59.453 33.333 7.40 0.00 0.00 3.33
275 276 7.614494 AGCAATAATTTTAGAGTGGCAATTGT 58.386 30.769 7.40 0.00 0.00 2.71
276 277 8.483307 AAGCAATAATTTTAGAGTGGCAATTG 57.517 30.769 0.00 0.00 0.00 2.32
277 278 9.506018 AAAAGCAATAATTTTAGAGTGGCAATT 57.494 25.926 0.00 0.00 0.00 2.32
278 279 8.938906 CAAAAGCAATAATTTTAGAGTGGCAAT 58.061 29.630 0.00 0.00 0.00 3.56
279 280 7.095271 GCAAAAGCAATAATTTTAGAGTGGCAA 60.095 33.333 0.00 0.00 0.00 4.52
280 281 6.368516 GCAAAAGCAATAATTTTAGAGTGGCA 59.631 34.615 0.00 0.00 0.00 4.92
281 282 6.183360 GGCAAAAGCAATAATTTTAGAGTGGC 60.183 38.462 0.00 0.00 0.00 5.01
282 283 6.873076 TGGCAAAAGCAATAATTTTAGAGTGG 59.127 34.615 0.00 0.00 0.00 4.00
283 284 7.384660 TGTGGCAAAAGCAATAATTTTAGAGTG 59.615 33.333 0.00 0.00 0.00 3.51
284 285 7.441017 TGTGGCAAAAGCAATAATTTTAGAGT 58.559 30.769 0.00 0.00 0.00 3.24
285 286 7.887996 TGTGGCAAAAGCAATAATTTTAGAG 57.112 32.000 0.00 0.00 0.00 2.43
286 287 9.935241 TTATGTGGCAAAAGCAATAATTTTAGA 57.065 25.926 0.00 0.00 0.00 2.10
289 290 8.460428 CCATTATGTGGCAAAAGCAATAATTTT 58.540 29.630 0.00 0.00 42.12 1.82
290 291 7.987649 CCATTATGTGGCAAAAGCAATAATTT 58.012 30.769 0.00 0.00 42.12 1.82
291 292 7.556733 CCATTATGTGGCAAAAGCAATAATT 57.443 32.000 0.00 0.00 42.12 1.40
306 307 8.570488 ACAATACATCACTATTGCCATTATGTG 58.430 33.333 0.00 0.00 37.55 3.21
307 308 8.696043 ACAATACATCACTATTGCCATTATGT 57.304 30.769 0.00 0.00 37.55 2.29
308 309 8.785946 TGACAATACATCACTATTGCCATTATG 58.214 33.333 0.00 0.00 37.55 1.90
309 310 8.922931 TGACAATACATCACTATTGCCATTAT 57.077 30.769 0.00 0.00 37.55 1.28
310 311 8.744568 TTGACAATACATCACTATTGCCATTA 57.255 30.769 0.00 0.00 37.55 1.90
311 312 7.643569 TTGACAATACATCACTATTGCCATT 57.356 32.000 0.00 0.00 37.55 3.16
312 313 7.643569 TTTGACAATACATCACTATTGCCAT 57.356 32.000 0.00 0.00 37.55 4.40
313 314 7.459795 TTTTGACAATACATCACTATTGCCA 57.540 32.000 0.00 0.00 37.55 4.92
314 315 8.028938 AGTTTTTGACAATACATCACTATTGCC 58.971 33.333 0.00 0.00 37.55 4.52
315 316 8.970691 AGTTTTTGACAATACATCACTATTGC 57.029 30.769 0.00 0.00 37.55 3.56
320 321 9.561069 ACTCTTAGTTTTTGACAATACATCACT 57.439 29.630 0.00 0.00 0.00 3.41
321 322 9.599322 CACTCTTAGTTTTTGACAATACATCAC 57.401 33.333 0.00 0.00 0.00 3.06
322 323 9.554395 TCACTCTTAGTTTTTGACAATACATCA 57.446 29.630 0.00 0.00 0.00 3.07
323 324 9.813080 GTCACTCTTAGTTTTTGACAATACATC 57.187 33.333 0.00 0.00 37.20 3.06
324 325 9.337396 TGTCACTCTTAGTTTTTGACAATACAT 57.663 29.630 0.34 0.00 42.68 2.29
325 326 8.725405 TGTCACTCTTAGTTTTTGACAATACA 57.275 30.769 0.34 0.00 42.68 2.29
330 331 8.106247 ACTTTTGTCACTCTTAGTTTTTGACA 57.894 30.769 0.00 0.00 43.65 3.58
338 339 9.391006 TGACATTTTACTTTTGTCACTCTTAGT 57.609 29.630 1.11 0.00 43.44 2.24
339 340 9.869844 CTGACATTTTACTTTTGTCACTCTTAG 57.130 33.333 1.11 0.00 43.44 2.18
340 341 9.607988 TCTGACATTTTACTTTTGTCACTCTTA 57.392 29.630 1.11 0.00 43.44 2.10
341 342 8.506168 TCTGACATTTTACTTTTGTCACTCTT 57.494 30.769 1.11 0.00 43.44 2.85
342 343 8.682936 ATCTGACATTTTACTTTTGTCACTCT 57.317 30.769 1.11 0.00 43.44 3.24
343 344 9.387123 GAATCTGACATTTTACTTTTGTCACTC 57.613 33.333 1.11 0.00 43.44 3.51
344 345 9.125026 AGAATCTGACATTTTACTTTTGTCACT 57.875 29.630 1.11 0.00 43.44 3.41
351 352 9.442047 CCACTCTAGAATCTGACATTTTACTTT 57.558 33.333 0.00 0.00 0.00 2.66
352 353 7.550906 GCCACTCTAGAATCTGACATTTTACTT 59.449 37.037 0.00 0.00 0.00 2.24
353 354 7.044798 GCCACTCTAGAATCTGACATTTTACT 58.955 38.462 0.00 0.00 0.00 2.24
354 355 6.818644 TGCCACTCTAGAATCTGACATTTTAC 59.181 38.462 0.00 0.00 0.00 2.01
355 356 6.946340 TGCCACTCTAGAATCTGACATTTTA 58.054 36.000 0.00 0.00 0.00 1.52
356 357 5.809001 TGCCACTCTAGAATCTGACATTTT 58.191 37.500 0.00 0.00 0.00 1.82
357 358 5.426689 TGCCACTCTAGAATCTGACATTT 57.573 39.130 0.00 0.00 0.00 2.32
358 359 5.627182 ATGCCACTCTAGAATCTGACATT 57.373 39.130 0.00 0.00 0.00 2.71
359 360 6.737720 TTATGCCACTCTAGAATCTGACAT 57.262 37.500 0.00 0.00 0.00 3.06
360 361 6.070824 TGTTTATGCCACTCTAGAATCTGACA 60.071 38.462 0.00 0.00 0.00 3.58
361 362 6.341316 TGTTTATGCCACTCTAGAATCTGAC 58.659 40.000 0.00 0.00 0.00 3.51
362 363 6.544928 TGTTTATGCCACTCTAGAATCTGA 57.455 37.500 0.00 0.00 0.00 3.27
363 364 7.335422 ACTTTGTTTATGCCACTCTAGAATCTG 59.665 37.037 0.00 0.00 0.00 2.90
364 365 7.335422 CACTTTGTTTATGCCACTCTAGAATCT 59.665 37.037 0.00 0.00 0.00 2.40
365 366 7.334421 TCACTTTGTTTATGCCACTCTAGAATC 59.666 37.037 0.00 0.00 0.00 2.52
366 367 7.168219 TCACTTTGTTTATGCCACTCTAGAAT 58.832 34.615 0.00 0.00 0.00 2.40
367 368 6.530120 TCACTTTGTTTATGCCACTCTAGAA 58.470 36.000 0.00 0.00 0.00 2.10
368 369 6.109156 TCACTTTGTTTATGCCACTCTAGA 57.891 37.500 0.00 0.00 0.00 2.43
369 370 6.595326 TGATCACTTTGTTTATGCCACTCTAG 59.405 38.462 0.00 0.00 0.00 2.43
370 371 6.472016 TGATCACTTTGTTTATGCCACTCTA 58.528 36.000 0.00 0.00 0.00 2.43
371 372 5.316167 TGATCACTTTGTTTATGCCACTCT 58.684 37.500 0.00 0.00 0.00 3.24
372 373 5.627499 TGATCACTTTGTTTATGCCACTC 57.373 39.130 0.00 0.00 0.00 3.51
373 374 6.403866 TTTGATCACTTTGTTTATGCCACT 57.596 33.333 0.00 0.00 0.00 4.00
374 375 6.346838 GCTTTTGATCACTTTGTTTATGCCAC 60.347 38.462 0.00 0.00 0.00 5.01
375 376 5.695816 GCTTTTGATCACTTTGTTTATGCCA 59.304 36.000 0.00 0.00 0.00 4.92
376 377 5.928264 AGCTTTTGATCACTTTGTTTATGCC 59.072 36.000 0.00 0.00 0.00 4.40
377 378 8.023128 TCTAGCTTTTGATCACTTTGTTTATGC 58.977 33.333 0.00 0.00 0.00 3.14
378 379 9.552114 CTCTAGCTTTTGATCACTTTGTTTATG 57.448 33.333 0.00 0.00 0.00 1.90
379 380 9.289782 ACTCTAGCTTTTGATCACTTTGTTTAT 57.710 29.630 0.00 0.00 0.00 1.40
380 381 8.559536 CACTCTAGCTTTTGATCACTTTGTTTA 58.440 33.333 0.00 0.00 0.00 2.01
381 382 7.420800 CACTCTAGCTTTTGATCACTTTGTTT 58.579 34.615 0.00 0.00 0.00 2.83
382 383 6.016777 CCACTCTAGCTTTTGATCACTTTGTT 60.017 38.462 0.00 0.00 0.00 2.83
383 384 5.471456 CCACTCTAGCTTTTGATCACTTTGT 59.529 40.000 0.00 0.00 0.00 2.83
384 385 5.618640 GCCACTCTAGCTTTTGATCACTTTG 60.619 44.000 0.00 0.00 0.00 2.77
385 386 4.457257 GCCACTCTAGCTTTTGATCACTTT 59.543 41.667 0.00 0.00 0.00 2.66
386 387 4.006319 GCCACTCTAGCTTTTGATCACTT 58.994 43.478 0.00 0.00 0.00 3.16
387 388 3.008375 TGCCACTCTAGCTTTTGATCACT 59.992 43.478 0.00 0.00 0.00 3.41
388 389 3.338249 TGCCACTCTAGCTTTTGATCAC 58.662 45.455 0.00 0.00 0.00 3.06
389 390 3.701205 TGCCACTCTAGCTTTTGATCA 57.299 42.857 0.00 0.00 0.00 2.92
390 391 5.376854 TTTTGCCACTCTAGCTTTTGATC 57.623 39.130 0.00 0.00 0.00 2.92
391 392 5.068987 TGTTTTTGCCACTCTAGCTTTTGAT 59.931 36.000 0.00 0.00 0.00 2.57
392 393 4.400884 TGTTTTTGCCACTCTAGCTTTTGA 59.599 37.500 0.00 0.00 0.00 2.69
393 394 4.681744 TGTTTTTGCCACTCTAGCTTTTG 58.318 39.130 0.00 0.00 0.00 2.44
394 395 5.337578 TTGTTTTTGCCACTCTAGCTTTT 57.662 34.783 0.00 0.00 0.00 2.27
395 396 5.105351 ACTTTGTTTTTGCCACTCTAGCTTT 60.105 36.000 0.00 0.00 0.00 3.51
396 397 4.402474 ACTTTGTTTTTGCCACTCTAGCTT 59.598 37.500 0.00 0.00 0.00 3.74
397 398 3.954258 ACTTTGTTTTTGCCACTCTAGCT 59.046 39.130 0.00 0.00 0.00 3.32
398 399 4.307443 ACTTTGTTTTTGCCACTCTAGC 57.693 40.909 0.00 0.00 0.00 3.42
399 400 6.255670 GGAAAACTTTGTTTTTGCCACTCTAG 59.744 38.462 9.36 0.00 32.30 2.43
400 401 6.103330 GGAAAACTTTGTTTTTGCCACTCTA 58.897 36.000 9.36 0.00 32.30 2.43
401 402 4.935205 GGAAAACTTTGTTTTTGCCACTCT 59.065 37.500 9.36 0.00 32.30 3.24
402 403 5.216566 GGAAAACTTTGTTTTTGCCACTC 57.783 39.130 9.36 0.00 32.30 3.51
790 833 0.035458 AACTCGAGTGCCAGGGAAAG 59.965 55.000 20.85 0.00 0.00 2.62
792 835 1.118965 TGAACTCGAGTGCCAGGGAA 61.119 55.000 20.85 0.00 0.00 3.97
794 837 0.036010 AATGAACTCGAGTGCCAGGG 60.036 55.000 20.85 0.00 0.00 4.45
796 839 2.959516 TGTAATGAACTCGAGTGCCAG 58.040 47.619 20.85 0.00 0.00 4.85
798 841 3.326747 ACTTGTAATGAACTCGAGTGCC 58.673 45.455 20.85 14.61 0.00 5.01
801 844 5.368256 ACGTACTTGTAATGAACTCGAGT 57.632 39.130 13.58 13.58 0.00 4.18
802 845 7.317502 CGTATACGTACTTGTAATGAACTCGAG 59.682 40.741 17.16 11.84 34.11 4.04
927 974 0.616371 ATCGATTGGTGGGTCGGAAA 59.384 50.000 0.00 0.00 38.34 3.13
1089 1141 1.964223 GACAGGTCAGTGAAGGACAGA 59.036 52.381 0.00 0.00 37.00 3.41
1788 1845 1.454111 GCGGGAGAGGAGCAGTAGA 60.454 63.158 0.00 0.00 0.00 2.59
1857 1914 0.899717 GGATGGGCTTGCCAAACTCA 60.900 55.000 14.04 2.10 0.00 3.41
2121 2217 3.941188 AGCACCCACACCTCCACG 61.941 66.667 0.00 0.00 0.00 4.94
2589 2685 4.697756 CCCACCATCACGTGCGGT 62.698 66.667 20.08 20.08 32.10 5.68
3181 3282 3.270027 TCGGACAATCCACTATGCAAAG 58.730 45.455 0.00 0.00 35.91 2.77
3241 3342 5.690865 TGAGTTGGGTGTCTGAAAATAAGT 58.309 37.500 0.00 0.00 0.00 2.24
3286 3387 9.495572 AAAAGAAAGAGTAAGTGAAGGTCATAG 57.504 33.333 0.00 0.00 0.00 2.23
3287 3388 9.490379 GAAAAGAAAGAGTAAGTGAAGGTCATA 57.510 33.333 0.00 0.00 0.00 2.15
3331 3446 9.944376 AGCTGAGTAATATGAAAACAGAAGTTA 57.056 29.630 0.00 0.00 36.84 2.24
3344 3459 6.927936 AGACATTGTAGCAGCTGAGTAATATG 59.072 38.462 20.43 14.48 0.00 1.78
3397 3512 3.173965 CCAGAACAAAGGAGAGGAGGTA 58.826 50.000 0.00 0.00 0.00 3.08
3438 3553 5.689383 TTGTGTTCCACTAGCAAAAGATC 57.311 39.130 0.00 0.00 35.11 2.75
3521 3636 7.220030 TCTAGTTTCAGGGAGATGCATAATTC 58.780 38.462 0.00 0.00 0.00 2.17
3589 3704 6.753107 AAAGTACAAGTAAAATGGATCGGG 57.247 37.500 0.00 0.00 0.00 5.14
3599 3714 8.400186 GGTCAGTGCTTAAAAAGTACAAGTAAA 58.600 33.333 9.94 0.00 45.20 2.01
3608 3723 4.952460 TCTACGGTCAGTGCTTAAAAAGT 58.048 39.130 0.00 0.00 0.00 2.66
3695 3818 6.183360 CGGTCAGCAACAAGTAATATGGATTT 60.183 38.462 0.00 0.00 0.00 2.17
3712 3835 1.816835 ACGAATACTCTTCGGTCAGCA 59.183 47.619 11.51 0.00 45.34 4.41
3753 3876 6.199342 GGTCGCAGAAGACAATTATAGAGTTC 59.801 42.308 0.00 0.00 42.62 3.01
3760 3883 4.752101 GCTATGGTCGCAGAAGACAATTAT 59.248 41.667 0.00 0.00 42.62 1.28
3847 3971 5.770685 AATCTTCTTCTACTCTTTGGGCT 57.229 39.130 0.00 0.00 0.00 5.19
4007 4667 3.118112 ACCACCAAAATTTGTGCCATTCA 60.118 39.130 4.92 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.