Multiple sequence alignment - TraesCS5A01G078400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G078400 chr5A 100.000 6299 0 0 1 6299 96430912 96424614 0.000000e+00 11633.0
1 TraesCS5A01G078400 chr5D 95.739 3849 116 16 2357 6189 102518871 102522687 0.000000e+00 6156.0
2 TraesCS5A01G078400 chr5D 92.297 2194 121 16 148 2340 102516747 102518893 0.000000e+00 3072.0
3 TraesCS5A01G078400 chr5D 81.356 236 37 6 80 315 417611570 417611342 1.080000e-42 185.0
4 TraesCS5A01G078400 chr5D 86.471 170 11 2 1 158 102506248 102506417 6.490000e-40 176.0
5 TraesCS5A01G078400 chr5D 93.162 117 5 2 6186 6299 102522729 102522845 1.090000e-37 169.0
6 TraesCS5A01G078400 chr5D 96.667 60 2 0 2246 2305 102519073 102519014 4.020000e-17 100.0
7 TraesCS5A01G078400 chr5B 95.224 3497 117 21 2357 5848 112186350 112189801 0.000000e+00 5487.0
8 TraesCS5A01G078400 chr5B 94.218 1228 43 7 630 1855 112180511 112181712 0.000000e+00 1849.0
9 TraesCS5A01G078400 chr5B 93.712 493 24 2 1848 2337 112185884 112186372 0.000000e+00 732.0
10 TraesCS5A01G078400 chr5B 79.487 195 31 7 83 277 235442432 235442617 5.120000e-26 130.0
11 TraesCS5A01G078400 chr7D 90.236 594 55 3 2556 3149 369457671 369457081 0.000000e+00 773.0
12 TraesCS5A01G078400 chr7D 96.396 111 3 1 2387 2496 175941706 175941816 1.390000e-41 182.0
13 TraesCS5A01G078400 chr7D 83.735 166 22 3 257 422 380644559 380644399 1.090000e-32 152.0
14 TraesCS5A01G078400 chr2A 89.782 597 58 1 2556 3149 515951993 515952589 0.000000e+00 761.0
15 TraesCS5A01G078400 chr2A 84.277 159 20 3 270 428 530109546 530109393 3.930000e-32 150.0
16 TraesCS5A01G078400 chr2A 79.747 158 32 0 83 240 216820468 216820625 1.430000e-21 115.0
17 TraesCS5A01G078400 chr4D 89.597 596 56 3 2556 3149 303078140 303078731 0.000000e+00 752.0
18 TraesCS5A01G078400 chr4D 86.207 145 20 0 257 401 267593908 267593764 2.350000e-34 158.0
19 TraesCS5A01G078400 chr4D 87.692 130 16 0 191 320 320516341 320516212 1.090000e-32 152.0
20 TraesCS5A01G078400 chr4D 84.277 159 20 3 270 428 416893133 416892980 3.930000e-32 150.0
21 TraesCS5A01G078400 chr4D 83.133 166 23 3 257 422 499048804 499048964 5.090000e-31 147.0
22 TraesCS5A01G078400 chr4D 81.013 158 22 4 83 240 94041589 94041738 1.110000e-22 119.0
23 TraesCS5A01G078400 chr3B 89.580 595 58 4 2556 3147 424127776 424128369 0.000000e+00 752.0
24 TraesCS5A01G078400 chr3B 92.683 123 6 3 2392 2513 341950181 341950061 2.330000e-39 174.0
25 TraesCS5A01G078400 chr3B 74.769 432 88 14 83 502 421920217 421920639 2.330000e-39 174.0
26 TraesCS5A01G078400 chr2B 89.394 594 61 2 2556 3149 451827389 451827980 0.000000e+00 747.0
27 TraesCS5A01G078400 chr2D 88.945 597 63 1 2556 3149 380416879 380417475 0.000000e+00 734.0
28 TraesCS5A01G078400 chr2D 85.507 138 20 0 180 317 253863204 253863341 1.830000e-30 145.0
29 TraesCS5A01G078400 chr4B 88.852 601 60 5 2556 3149 377797480 377798080 0.000000e+00 732.0
30 TraesCS5A01G078400 chr3D 88.908 595 63 2 2556 3149 182651295 182650703 0.000000e+00 730.0
31 TraesCS5A01G078400 chr3D 88.095 126 15 0 192 317 251800599 251800724 3.930000e-32 150.0
32 TraesCS5A01G078400 chr3D 82.278 158 23 4 83 240 169733321 169733473 1.420000e-26 132.0
33 TraesCS5A01G078400 chr3A 88.519 601 65 4 2552 3149 438363440 438362841 0.000000e+00 725.0
34 TraesCS5A01G078400 chr3A 73.272 434 92 12 86 502 13243164 13243590 3.060000e-28 137.0
35 TraesCS5A01G078400 chr3A 87.302 63 5 3 6049 6109 83778265 83778204 1.130000e-07 69.4
36 TraesCS5A01G078400 chr4A 95.495 111 4 1 2387 2496 215140003 215139893 6.490000e-40 176.0
37 TraesCS5A01G078400 chr7B 90.769 130 8 4 2392 2517 531650823 531650694 3.020000e-38 171.0
38 TraesCS5A01G078400 chr7A 92.437 119 7 2 2392 2509 206958833 206958950 1.090000e-37 169.0
39 TraesCS5A01G078400 chr6D 93.103 116 7 1 2387 2501 249987107 249987222 1.090000e-37 169.0
40 TraesCS5A01G078400 chr1D 89.231 130 11 3 2392 2520 262713941 262714068 6.540000e-35 159.0
41 TraesCS5A01G078400 chr1D 83.735 166 22 3 259 424 229444649 229444809 1.090000e-32 152.0
42 TraesCS5A01G078400 chr1D 87.597 129 16 0 192 320 367687359 367687231 3.930000e-32 150.0
43 TraesCS5A01G078400 chr1D 83.607 122 20 0 119 240 202730834 202730713 1.430000e-21 115.0
44 TraesCS5A01G078400 chr6A 87.097 62 8 0 26 87 278106584 278106523 3.150000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G078400 chr5A 96424614 96430912 6298 True 11633.000000 11633 100.000000 1 6299 1 chr5A.!!$R1 6298
1 TraesCS5A01G078400 chr5D 102516747 102522845 6098 False 3132.333333 6156 93.732667 148 6299 3 chr5D.!!$F2 6151
2 TraesCS5A01G078400 chr5B 112185884 112189801 3917 False 3109.500000 5487 94.468000 1848 5848 2 chr5B.!!$F3 4000
3 TraesCS5A01G078400 chr5B 112180511 112181712 1201 False 1849.000000 1849 94.218000 630 1855 1 chr5B.!!$F1 1225
4 TraesCS5A01G078400 chr7D 369457081 369457671 590 True 773.000000 773 90.236000 2556 3149 1 chr7D.!!$R1 593
5 TraesCS5A01G078400 chr2A 515951993 515952589 596 False 761.000000 761 89.782000 2556 3149 1 chr2A.!!$F2 593
6 TraesCS5A01G078400 chr4D 303078140 303078731 591 False 752.000000 752 89.597000 2556 3149 1 chr4D.!!$F2 593
7 TraesCS5A01G078400 chr3B 424127776 424128369 593 False 752.000000 752 89.580000 2556 3147 1 chr3B.!!$F2 591
8 TraesCS5A01G078400 chr2B 451827389 451827980 591 False 747.000000 747 89.394000 2556 3149 1 chr2B.!!$F1 593
9 TraesCS5A01G078400 chr2D 380416879 380417475 596 False 734.000000 734 88.945000 2556 3149 1 chr2D.!!$F2 593
10 TraesCS5A01G078400 chr4B 377797480 377798080 600 False 732.000000 732 88.852000 2556 3149 1 chr4B.!!$F1 593
11 TraesCS5A01G078400 chr3D 182650703 182651295 592 True 730.000000 730 88.908000 2556 3149 1 chr3D.!!$R1 593
12 TraesCS5A01G078400 chr3A 438362841 438363440 599 True 725.000000 725 88.519000 2552 3149 1 chr3A.!!$R2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.036875 GGGAGTGGTGTGGAAAGGAG 59.963 60.000 0.00 0.00 0.00 3.69 F
320 321 0.106708 AGCATGAATACGGCACCGAT 59.893 50.000 17.40 2.14 42.83 4.18 F
321 322 0.235665 GCATGAATACGGCACCGATG 59.764 55.000 17.40 9.55 42.83 3.84 F
849 850 0.410270 AAGGGAGGAGGAAGACGACT 59.590 55.000 0.00 0.00 0.00 4.18 F
2072 2075 1.202758 GCACCCATGATCCAATACCGA 60.203 52.381 0.00 0.00 0.00 4.69 F
2636 2639 2.092646 TGCTACACCCAACTGTTGAACT 60.093 45.455 21.49 4.05 0.00 3.01 F
4491 4521 0.249911 ACTTGCGGACTCAGGAACAC 60.250 55.000 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1343 0.101399 CGAGGACCAGGAATCTGACG 59.899 60.000 0.00 0.00 43.49 4.35 R
2046 2049 0.405198 TGGATCATGGGTGCACAAGT 59.595 50.000 20.43 0.00 0.00 3.16 R
2161 2164 2.778299 TGGAAAGATTTCAGGACCACG 58.222 47.619 7.56 0.00 38.92 4.94 R
2663 2666 0.179140 CCACAATGTTGTATGGCGCC 60.179 55.000 22.73 22.73 39.91 6.53 R
3077 3106 1.077429 GGATGAGGTCACAAGGGGC 60.077 63.158 0.00 0.00 0.00 5.80 R
4575 4605 1.134367 CTGCCATTCTTCAGCACATGG 59.866 52.381 0.00 0.00 39.48 3.66 R
5300 5330 0.255890 AGGGCAATATCGGCACTGTT 59.744 50.000 3.47 0.00 44.92 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.252974 AGGTGACATCCACGATCTTTC 57.747 47.619 0.00 0.00 46.62 2.62
24 25 2.567169 AGGTGACATCCACGATCTTTCA 59.433 45.455 0.00 0.00 46.62 2.69
25 26 2.932614 GGTGACATCCACGATCTTTCAG 59.067 50.000 0.00 0.00 46.62 3.02
26 27 3.368427 GGTGACATCCACGATCTTTCAGA 60.368 47.826 0.00 0.00 46.62 3.27
27 28 4.245660 GTGACATCCACGATCTTTCAGAA 58.754 43.478 0.00 0.00 35.86 3.02
28 29 4.328440 GTGACATCCACGATCTTTCAGAAG 59.672 45.833 0.00 0.00 35.86 2.85
29 30 4.021104 TGACATCCACGATCTTTCAGAAGT 60.021 41.667 0.00 0.00 34.41 3.01
30 31 4.499183 ACATCCACGATCTTTCAGAAGTC 58.501 43.478 0.00 0.00 34.41 3.01
31 32 4.021104 ACATCCACGATCTTTCAGAAGTCA 60.021 41.667 0.00 0.00 34.41 3.41
32 33 4.808414 TCCACGATCTTTCAGAAGTCAT 57.192 40.909 0.00 0.00 34.41 3.06
33 34 4.498241 TCCACGATCTTTCAGAAGTCATG 58.502 43.478 0.00 0.00 34.41 3.07
34 35 4.220602 TCCACGATCTTTCAGAAGTCATGA 59.779 41.667 0.00 0.00 34.41 3.07
35 36 5.105187 TCCACGATCTTTCAGAAGTCATGAT 60.105 40.000 0.00 0.00 34.41 2.45
36 37 5.006455 CCACGATCTTTCAGAAGTCATGATG 59.994 44.000 0.00 0.00 34.41 3.07
37 38 5.006455 CACGATCTTTCAGAAGTCATGATGG 59.994 44.000 0.00 0.00 34.41 3.51
38 39 4.510711 CGATCTTTCAGAAGTCATGATGGG 59.489 45.833 0.00 0.00 34.41 4.00
39 40 5.678583 GATCTTTCAGAAGTCATGATGGGA 58.321 41.667 0.00 0.00 34.41 4.37
40 41 5.095145 TCTTTCAGAAGTCATGATGGGAG 57.905 43.478 0.00 0.00 34.41 4.30
41 42 4.533707 TCTTTCAGAAGTCATGATGGGAGT 59.466 41.667 0.00 0.00 34.41 3.85
42 43 3.900966 TCAGAAGTCATGATGGGAGTG 57.099 47.619 0.00 0.00 0.00 3.51
43 44 2.502947 TCAGAAGTCATGATGGGAGTGG 59.497 50.000 0.00 0.00 0.00 4.00
44 45 2.238144 CAGAAGTCATGATGGGAGTGGT 59.762 50.000 0.00 0.00 0.00 4.16
45 46 2.238144 AGAAGTCATGATGGGAGTGGTG 59.762 50.000 0.00 0.00 0.00 4.17
46 47 1.661463 AGTCATGATGGGAGTGGTGT 58.339 50.000 0.00 0.00 0.00 4.16
47 48 1.280133 AGTCATGATGGGAGTGGTGTG 59.720 52.381 0.00 0.00 0.00 3.82
48 49 0.620030 TCATGATGGGAGTGGTGTGG 59.380 55.000 0.00 0.00 0.00 4.17
49 50 0.620030 CATGATGGGAGTGGTGTGGA 59.380 55.000 0.00 0.00 0.00 4.02
50 51 1.004628 CATGATGGGAGTGGTGTGGAA 59.995 52.381 0.00 0.00 0.00 3.53
51 52 1.144691 TGATGGGAGTGGTGTGGAAA 58.855 50.000 0.00 0.00 0.00 3.13
52 53 1.073763 TGATGGGAGTGGTGTGGAAAG 59.926 52.381 0.00 0.00 0.00 2.62
53 54 0.405585 ATGGGAGTGGTGTGGAAAGG 59.594 55.000 0.00 0.00 0.00 3.11
54 55 0.696143 TGGGAGTGGTGTGGAAAGGA 60.696 55.000 0.00 0.00 0.00 3.36
55 56 0.036875 GGGAGTGGTGTGGAAAGGAG 59.963 60.000 0.00 0.00 0.00 3.69
56 57 1.056660 GGAGTGGTGTGGAAAGGAGA 58.943 55.000 0.00 0.00 0.00 3.71
57 58 1.420138 GGAGTGGTGTGGAAAGGAGAA 59.580 52.381 0.00 0.00 0.00 2.87
58 59 2.158667 GGAGTGGTGTGGAAAGGAGAAA 60.159 50.000 0.00 0.00 0.00 2.52
59 60 3.142174 GAGTGGTGTGGAAAGGAGAAAG 58.858 50.000 0.00 0.00 0.00 2.62
60 61 2.158608 AGTGGTGTGGAAAGGAGAAAGG 60.159 50.000 0.00 0.00 0.00 3.11
61 62 1.144913 TGGTGTGGAAAGGAGAAAGGG 59.855 52.381 0.00 0.00 0.00 3.95
62 63 1.423921 GGTGTGGAAAGGAGAAAGGGA 59.576 52.381 0.00 0.00 0.00 4.20
63 64 2.041755 GGTGTGGAAAGGAGAAAGGGAT 59.958 50.000 0.00 0.00 0.00 3.85
64 65 3.348119 GTGTGGAAAGGAGAAAGGGATC 58.652 50.000 0.00 0.00 0.00 3.36
65 66 3.009584 GTGTGGAAAGGAGAAAGGGATCT 59.990 47.826 0.00 0.00 0.00 2.75
66 67 3.009473 TGTGGAAAGGAGAAAGGGATCTG 59.991 47.826 0.00 0.00 0.00 2.90
67 68 3.264450 GTGGAAAGGAGAAAGGGATCTGA 59.736 47.826 0.00 0.00 0.00 3.27
68 69 3.521126 TGGAAAGGAGAAAGGGATCTGAG 59.479 47.826 0.00 0.00 0.00 3.35
69 70 3.118075 GGAAAGGAGAAAGGGATCTGAGG 60.118 52.174 0.00 0.00 0.00 3.86
70 71 1.506025 AGGAGAAAGGGATCTGAGGC 58.494 55.000 0.00 0.00 0.00 4.70
71 72 1.207791 GGAGAAAGGGATCTGAGGCA 58.792 55.000 0.00 0.00 0.00 4.75
72 73 1.140652 GGAGAAAGGGATCTGAGGCAG 59.859 57.143 0.00 0.00 0.00 4.85
73 74 2.114616 GAGAAAGGGATCTGAGGCAGA 58.885 52.381 0.00 0.00 44.99 4.26
80 81 2.895680 TCTGAGGCAGATGACCGC 59.104 61.111 0.00 0.00 35.39 5.68
81 82 2.584418 CTGAGGCAGATGACCGCG 60.584 66.667 0.00 0.00 32.44 6.46
82 83 4.147449 TGAGGCAGATGACCGCGG 62.147 66.667 26.86 26.86 0.00 6.46
85 86 4.221422 GGCAGATGACCGCGGCTA 62.221 66.667 28.58 15.66 0.00 3.93
86 87 2.029666 GCAGATGACCGCGGCTAT 59.970 61.111 28.58 20.29 0.00 2.97
87 88 2.313172 GCAGATGACCGCGGCTATG 61.313 63.158 28.58 18.52 0.00 2.23
88 89 1.665916 CAGATGACCGCGGCTATGG 60.666 63.158 28.58 10.26 0.00 2.74
89 90 2.134287 AGATGACCGCGGCTATGGT 61.134 57.895 28.58 3.50 42.42 3.55
90 91 1.956170 GATGACCGCGGCTATGGTG 60.956 63.158 28.58 0.00 38.99 4.17
91 92 3.460672 ATGACCGCGGCTATGGTGG 62.461 63.158 28.58 0.00 38.99 4.61
92 93 4.910585 GACCGCGGCTATGGTGGG 62.911 72.222 28.58 0.00 38.99 4.61
97 98 4.488136 CGGCTATGGTGGGCAGCA 62.488 66.667 0.00 0.00 43.48 4.41
98 99 2.517875 GGCTATGGTGGGCAGCAG 60.518 66.667 0.00 0.00 42.52 4.24
99 100 2.591753 GCTATGGTGGGCAGCAGA 59.408 61.111 0.00 0.00 42.52 4.26
100 101 4.872357 CTATGGTGGGCAGCAGAG 57.128 61.111 0.00 0.00 42.52 3.35
101 102 1.147824 CTATGGTGGGCAGCAGAGG 59.852 63.158 0.00 0.00 42.47 3.69
102 103 2.335092 CTATGGTGGGCAGCAGAGGG 62.335 65.000 0.00 0.00 42.47 4.30
103 104 2.838436 TATGGTGGGCAGCAGAGGGA 62.838 60.000 0.00 0.00 42.52 4.20
104 105 4.416738 GGTGGGCAGCAGAGGGAC 62.417 72.222 0.00 0.00 0.00 4.46
105 106 4.767255 GTGGGCAGCAGAGGGACG 62.767 72.222 0.00 0.00 0.00 4.79
108 109 3.474570 GGCAGCAGAGGGACGGAT 61.475 66.667 0.00 0.00 0.00 4.18
109 110 2.202987 GCAGCAGAGGGACGGATG 60.203 66.667 0.00 0.00 33.61 3.51
110 111 2.503061 CAGCAGAGGGACGGATGG 59.497 66.667 0.00 0.00 0.00 3.51
111 112 2.765807 AGCAGAGGGACGGATGGG 60.766 66.667 0.00 0.00 0.00 4.00
112 113 3.083997 GCAGAGGGACGGATGGGT 61.084 66.667 0.00 0.00 0.00 4.51
113 114 2.903357 CAGAGGGACGGATGGGTG 59.097 66.667 0.00 0.00 0.00 4.61
114 115 2.365635 AGAGGGACGGATGGGTGG 60.366 66.667 0.00 0.00 0.00 4.61
115 116 2.687566 GAGGGACGGATGGGTGGT 60.688 66.667 0.00 0.00 0.00 4.16
116 117 3.009115 AGGGACGGATGGGTGGTG 61.009 66.667 0.00 0.00 0.00 4.17
117 118 3.327404 GGGACGGATGGGTGGTGT 61.327 66.667 0.00 0.00 0.00 4.16
118 119 2.267961 GGACGGATGGGTGGTGTC 59.732 66.667 0.00 0.00 0.00 3.67
119 120 2.125673 GACGGATGGGTGGTGTCG 60.126 66.667 0.00 0.00 0.00 4.35
120 121 3.659089 GACGGATGGGTGGTGTCGG 62.659 68.421 0.00 0.00 0.00 4.79
121 122 3.387091 CGGATGGGTGGTGTCGGA 61.387 66.667 0.00 0.00 0.00 4.55
122 123 2.584608 GGATGGGTGGTGTCGGAG 59.415 66.667 0.00 0.00 0.00 4.63
123 124 2.291043 GGATGGGTGGTGTCGGAGT 61.291 63.158 0.00 0.00 0.00 3.85
124 125 0.974010 GGATGGGTGGTGTCGGAGTA 60.974 60.000 0.00 0.00 0.00 2.59
125 126 0.460311 GATGGGTGGTGTCGGAGTAG 59.540 60.000 0.00 0.00 0.00 2.57
126 127 1.614241 ATGGGTGGTGTCGGAGTAGC 61.614 60.000 0.00 0.00 0.00 3.58
127 128 1.982938 GGGTGGTGTCGGAGTAGCT 60.983 63.158 0.00 0.00 0.00 3.32
128 129 1.215647 GGTGGTGTCGGAGTAGCTG 59.784 63.158 0.00 0.00 0.00 4.24
129 130 1.446272 GTGGTGTCGGAGTAGCTGC 60.446 63.158 0.00 0.00 0.00 5.25
130 131 2.184579 GGTGTCGGAGTAGCTGCC 59.815 66.667 0.00 0.00 0.00 4.85
131 132 2.352032 GGTGTCGGAGTAGCTGCCT 61.352 63.158 0.00 0.00 0.00 4.75
132 133 1.139947 GTGTCGGAGTAGCTGCCTC 59.860 63.158 0.00 1.03 0.00 4.70
133 134 1.304134 TGTCGGAGTAGCTGCCTCA 60.304 57.895 14.83 5.57 0.00 3.86
134 135 1.315981 TGTCGGAGTAGCTGCCTCAG 61.316 60.000 14.83 11.63 34.12 3.35
145 146 3.972227 GCCTCAGCAATCGTGTGT 58.028 55.556 0.00 0.00 39.53 3.72
146 147 1.790387 GCCTCAGCAATCGTGTGTC 59.210 57.895 0.00 0.00 39.53 3.67
160 161 2.080693 GTGTGTCATTAATGTGGGCGA 58.919 47.619 14.97 0.00 0.00 5.54
161 162 2.080693 TGTGTCATTAATGTGGGCGAC 58.919 47.619 14.97 5.66 0.00 5.19
173 174 1.737008 GGGCGACAGAAGGACGAAC 60.737 63.158 0.00 0.00 0.00 3.95
181 182 3.236003 GAAGGACGAACGGGTGGCT 62.236 63.158 0.00 0.00 0.00 4.75
209 210 3.002246 GTCGTTTGAACATGAAGCAGTCA 59.998 43.478 0.00 0.00 41.67 3.41
217 218 1.230635 ATGAAGCAGTCACGTGCACC 61.231 55.000 11.67 0.78 46.60 5.01
272 273 2.267642 CCCCTTCAATGTCGGCGA 59.732 61.111 4.99 4.99 0.00 5.54
274 275 1.375396 CCCTTCAATGTCGGCGACA 60.375 57.895 40.35 40.35 46.90 4.35
313 314 1.224069 CTGGCCGAGCATGAATACGG 61.224 60.000 0.00 6.42 46.74 4.02
317 318 1.498865 CCGAGCATGAATACGGCACC 61.499 60.000 0.00 0.00 38.98 5.01
320 321 0.106708 AGCATGAATACGGCACCGAT 59.893 50.000 17.40 2.14 42.83 4.18
321 322 0.235665 GCATGAATACGGCACCGATG 59.764 55.000 17.40 9.55 42.83 3.84
356 357 2.596338 CCGTTTTGGGCGGGAAGT 60.596 61.111 0.00 0.00 44.98 3.01
358 359 2.338620 GTTTTGGGCGGGAAGTGC 59.661 61.111 0.00 0.00 0.00 4.40
383 384 2.746277 CGAGGAAGCGGGTTTGGG 60.746 66.667 0.00 0.00 0.00 4.12
393 394 2.466186 GGGTTTGGGTGGGTCAGGA 61.466 63.158 0.00 0.00 0.00 3.86
396 397 2.824880 TTTGGGTGGGTCAGGACGG 61.825 63.158 0.00 0.00 0.00 4.79
401 402 1.906824 GTGGGTCAGGACGGTCAGA 60.907 63.158 10.76 4.49 0.00 3.27
402 403 1.078528 TGGGTCAGGACGGTCAGAT 59.921 57.895 10.76 0.00 0.00 2.90
403 404 1.257750 TGGGTCAGGACGGTCAGATG 61.258 60.000 10.76 5.76 0.00 2.90
404 405 0.970937 GGGTCAGGACGGTCAGATGA 60.971 60.000 10.76 8.00 0.00 2.92
405 406 0.457851 GGTCAGGACGGTCAGATGAG 59.542 60.000 10.76 0.00 0.00 2.90
406 407 1.464734 GTCAGGACGGTCAGATGAGA 58.535 55.000 10.76 0.00 0.00 3.27
407 408 2.028130 GTCAGGACGGTCAGATGAGAT 58.972 52.381 10.76 0.00 0.00 2.75
408 409 2.027385 TCAGGACGGTCAGATGAGATG 58.973 52.381 10.76 0.00 0.00 2.90
421 422 2.046892 AGATGTCGGTGTGGCAGC 60.047 61.111 0.00 0.00 0.00 5.25
443 444 2.436646 CGGACGCCAGCAAATCCT 60.437 61.111 0.00 0.00 0.00 3.24
444 445 2.464459 CGGACGCCAGCAAATCCTC 61.464 63.158 0.00 0.00 0.00 3.71
445 446 2.115291 GGACGCCAGCAAATCCTCC 61.115 63.158 0.00 0.00 0.00 4.30
463 464 1.487231 CGTCTGACTTCGGTTTGCG 59.513 57.895 6.21 0.00 0.00 4.85
464 465 1.860078 GTCTGACTTCGGTTTGCGG 59.140 57.895 0.00 0.00 0.00 5.69
502 503 0.791422 CGTTTTGCGGACCGATACAA 59.209 50.000 20.50 9.82 36.85 2.41
505 506 3.422655 GTTTTGCGGACCGATACAAATC 58.577 45.455 20.50 13.28 32.50 2.17
536 537 6.289064 GGATAATTTCCGTGGTCTGAATAGT 58.711 40.000 0.00 0.00 33.93 2.12
537 538 6.766467 GGATAATTTCCGTGGTCTGAATAGTT 59.234 38.462 0.00 0.00 33.93 2.24
540 541 3.328382 TCCGTGGTCTGAATAGTTTGG 57.672 47.619 0.00 0.00 0.00 3.28
543 544 3.000727 CGTGGTCTGAATAGTTTGGTCC 58.999 50.000 0.00 0.00 0.00 4.46
547 548 3.118371 GGTCTGAATAGTTTGGTCCGGAT 60.118 47.826 7.81 0.00 0.00 4.18
567 568 2.473070 TGTATCCCGGTCATTTGAGGA 58.527 47.619 0.00 0.00 0.00 3.71
570 571 0.546122 TCCCGGTCATTTGAGGATGG 59.454 55.000 0.00 0.00 0.00 3.51
577 578 1.819632 ATTTGAGGATGGGCGCGTC 60.820 57.895 14.33 14.33 0.00 5.19
668 669 6.764085 TCAAAAGAAGTCCACGAAACTAATCA 59.236 34.615 0.00 0.00 0.00 2.57
693 694 2.832178 CACGAATACGCAACAAACATCG 59.168 45.455 0.00 0.00 43.96 3.84
706 707 6.020281 GCAACAAACATCGTGTACAATTTTCA 60.020 34.615 0.00 0.00 0.00 2.69
811 812 3.448301 AGTATACCCGAAATGACGTTGGA 59.552 43.478 0.00 0.00 0.00 3.53
849 850 0.410270 AAGGGAGGAGGAAGACGACT 59.590 55.000 0.00 0.00 0.00 4.18
934 935 2.487532 CGACCGCTCTTCCCCGTAT 61.488 63.158 0.00 0.00 0.00 3.06
969 970 4.671569 CTAGCGCCAGCCGATCCC 62.672 72.222 2.29 0.00 46.67 3.85
1342 1343 2.781911 GGGAGCGGTTCCTGATTTC 58.218 57.895 4.14 0.00 45.98 2.17
1368 1369 2.765807 CCTGGTCCTCGGATGCCT 60.766 66.667 0.00 0.00 0.00 4.75
1427 1428 8.909708 TTCTTGATATTTTACATGGAAAAGCG 57.090 30.769 20.15 6.04 32.06 4.68
1428 1429 6.972328 TCTTGATATTTTACATGGAAAAGCGC 59.028 34.615 20.15 12.01 32.06 5.92
1429 1430 5.270083 TGATATTTTACATGGAAAAGCGCG 58.730 37.500 20.15 0.00 32.06 6.86
1430 1431 3.840890 ATTTTACATGGAAAAGCGCGA 57.159 38.095 20.15 0.00 32.06 5.87
1431 1432 2.604969 TTTACATGGAAAAGCGCGAC 57.395 45.000 12.10 0.04 0.00 5.19
1432 1433 1.803334 TTACATGGAAAAGCGCGACT 58.197 45.000 12.10 3.13 0.00 4.18
1521 1522 1.492176 GGGCTTCTGATCCTTGGATCA 59.508 52.381 25.37 25.37 39.06 2.92
1524 1525 4.019174 GGCTTCTGATCCTTGGATCAAAA 58.981 43.478 26.43 20.86 40.60 2.44
1538 1539 7.705325 CCTTGGATCAAAATTGTGATTCTGATC 59.295 37.037 16.48 2.82 38.38 2.92
1591 1593 6.732896 ACGAGTAGGATCTAATTCCATTGT 57.267 37.500 0.00 0.00 38.32 2.71
1592 1594 6.516718 ACGAGTAGGATCTAATTCCATTGTG 58.483 40.000 0.00 0.00 38.32 3.33
1593 1595 6.098409 ACGAGTAGGATCTAATTCCATTGTGT 59.902 38.462 0.00 0.00 38.32 3.72
1594 1596 6.422100 CGAGTAGGATCTAATTCCATTGTGTG 59.578 42.308 0.00 0.00 38.32 3.82
1595 1597 7.437713 AGTAGGATCTAATTCCATTGTGTGA 57.562 36.000 0.00 0.00 38.32 3.58
1596 1598 7.861629 AGTAGGATCTAATTCCATTGTGTGAA 58.138 34.615 0.00 0.00 38.32 3.18
1597 1599 7.770897 AGTAGGATCTAATTCCATTGTGTGAAC 59.229 37.037 0.00 0.00 38.32 3.18
1598 1600 5.888161 AGGATCTAATTCCATTGTGTGAACC 59.112 40.000 0.00 0.00 38.32 3.62
1599 1601 5.888161 GGATCTAATTCCATTGTGTGAACCT 59.112 40.000 0.00 0.00 35.72 3.50
1600 1602 6.378280 GGATCTAATTCCATTGTGTGAACCTT 59.622 38.462 0.00 0.00 35.72 3.50
1626 1628 3.006247 GTTCCACTTCCTGAGCTCATTC 58.994 50.000 18.63 0.00 0.00 2.67
1662 1664 2.832129 TCTGAAGTGCGGTCTTAGGATT 59.168 45.455 0.00 0.00 0.00 3.01
1671 1673 4.102524 TGCGGTCTTAGGATTATCATGGTT 59.897 41.667 0.00 0.00 0.00 3.67
1714 1716 8.868916 TGTTCTTTTCTGTTCACTAAAATTTGC 58.131 29.630 0.00 0.00 0.00 3.68
1717 1719 8.031864 TCTTTTCTGTTCACTAAAATTTGCACA 58.968 29.630 0.00 0.00 0.00 4.57
1805 1808 4.406649 CCCTAGGATAACCGTTTAAGTCCA 59.593 45.833 11.48 0.00 41.83 4.02
1883 1886 5.560724 TGATAATATGCCCTTAAGTGCCTC 58.439 41.667 7.50 0.00 0.00 4.70
1893 1896 4.039973 CCCTTAAGTGCCTCCATCGTATTA 59.960 45.833 0.97 0.00 0.00 0.98
2036 2039 5.013079 CACAAGTAGGGGAGGCATATTATCA 59.987 44.000 0.00 0.00 0.00 2.15
2046 2049 5.336929 GGAGGCATATTATCAAATGCATGCA 60.337 40.000 25.04 25.04 46.27 3.96
2072 2075 1.202758 GCACCCATGATCCAATACCGA 60.203 52.381 0.00 0.00 0.00 4.69
2075 2078 3.008375 CACCCATGATCCAATACCGAGAT 59.992 47.826 0.00 0.00 0.00 2.75
2076 2079 3.652869 ACCCATGATCCAATACCGAGATT 59.347 43.478 0.00 0.00 0.00 2.40
2077 2080 4.104738 ACCCATGATCCAATACCGAGATTT 59.895 41.667 0.00 0.00 0.00 2.17
2078 2081 4.456911 CCCATGATCCAATACCGAGATTTG 59.543 45.833 0.00 0.00 0.00 2.32
2079 2082 5.065914 CCATGATCCAATACCGAGATTTGT 58.934 41.667 0.00 0.00 0.00 2.83
2097 2100 5.957910 TTTGTTTGTTATTTTGCTGTCCG 57.042 34.783 0.00 0.00 0.00 4.79
2118 2121 5.699458 TCCGTTTCCTACATGTTTTCTTCTC 59.301 40.000 2.30 0.00 0.00 2.87
2161 2164 8.194769 TGGTTTTCCTCATTCAGTTTACTTTTC 58.805 33.333 0.00 0.00 41.38 2.29
2175 2178 5.934935 TTACTTTTCGTGGTCCTGAAATC 57.065 39.130 9.69 0.00 34.35 2.17
2243 2246 3.057596 TGCCACATGTTTCCTTTCGAATC 60.058 43.478 0.00 0.00 0.00 2.52
2288 2291 6.264292 ACACACAAAATACATCAGGCAAACTA 59.736 34.615 0.00 0.00 0.00 2.24
2331 2334 6.826893 ATGCTTGTGAACAACAACAATAAC 57.173 33.333 0.00 0.00 43.96 1.89
2332 2335 5.714047 TGCTTGTGAACAACAACAATAACA 58.286 33.333 0.00 0.00 43.96 2.41
2333 2336 6.159293 TGCTTGTGAACAACAACAATAACAA 58.841 32.000 0.00 0.00 43.96 2.83
2334 2337 6.090088 TGCTTGTGAACAACAACAATAACAAC 59.910 34.615 0.00 0.00 43.96 3.32
2335 2338 6.090088 GCTTGTGAACAACAACAATAACAACA 59.910 34.615 0.00 0.00 43.96 3.33
2336 2339 7.359598 GCTTGTGAACAACAACAATAACAACAA 60.360 33.333 0.00 0.00 43.96 2.83
2337 2340 7.339732 TGTGAACAACAACAATAACAACAAC 57.660 32.000 0.00 0.00 35.24 3.32
2338 2341 6.923508 TGTGAACAACAACAATAACAACAACA 59.076 30.769 0.00 0.00 35.24 3.33
2339 2342 7.438160 TGTGAACAACAACAATAACAACAACAA 59.562 29.630 0.00 0.00 35.24 2.83
2340 2343 7.738176 GTGAACAACAACAATAACAACAACAAC 59.262 33.333 0.00 0.00 0.00 3.32
2341 2344 7.438160 TGAACAACAACAATAACAACAACAACA 59.562 29.630 0.00 0.00 0.00 3.33
2342 2345 7.715265 ACAACAACAATAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2343 2346 7.568433 ACAACAACAATAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2344 2347 7.224753 ACAACAACAATAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2345 2348 7.715265 ACAACAATAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2346 2349 7.568433 ACAACAATAACAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2347 2350 7.224753 ACAACAATAACAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2348 2351 7.715265 ACAATAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2349 2352 7.568433 ACAATAACAACAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2350 2353 7.224753 ACAATAACAACAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2351 2354 7.715265 ATAACAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2352 2355 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2353 2356 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2354 2357 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2355 2358 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2356 2359 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2357 2360 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2358 2361 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
2359 2362 7.224753 ACAACAACAACAACAACAACAACAATA 59.775 29.630 0.00 0.00 0.00 1.90
2360 2363 7.715265 ACAACAACAACAACAACAACAATAA 57.285 28.000 0.00 0.00 0.00 1.40
2361 2364 7.568433 ACAACAACAACAACAACAACAATAAC 58.432 30.769 0.00 0.00 0.00 1.89
2362 2365 7.224753 ACAACAACAACAACAACAACAATAACA 59.775 29.630 0.00 0.00 0.00 2.41
2363 2366 7.715265 ACAACAACAACAACAACAATAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2364 2367 7.568433 ACAACAACAACAACAACAATAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2365 2368 7.224753 ACAACAACAACAACAACAATAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2366 2369 7.715265 ACAACAACAACAACAATAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2370 2373 7.568433 ACAACAACAACAATAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2431 2434 6.240894 AGCATGAGTTGGTTTTGAGATCTTA 58.759 36.000 0.00 0.00 29.87 2.10
2483 2486 4.098807 TGTTTGGGACTAAAGGCTTTGTTC 59.901 41.667 22.32 16.44 0.00 3.18
2541 2544 3.027412 TGCCTGGTGTATTTTGTGTGTT 58.973 40.909 0.00 0.00 0.00 3.32
2608 2611 3.014623 CACACATCCATCTGAACATGCT 58.985 45.455 0.00 0.00 0.00 3.79
2636 2639 2.092646 TGCTACACCCAACTGTTGAACT 60.093 45.455 21.49 4.05 0.00 3.01
2663 2666 2.613977 CCCTCTAGTCAGCCAACACTTG 60.614 54.545 0.00 0.00 0.00 3.16
2828 2838 4.588951 TCGATATTACCATCCTTCTGCAGT 59.411 41.667 14.67 0.00 0.00 4.40
2850 2862 4.026744 TGTTGACCCCAAACATTGAAAGA 58.973 39.130 0.00 0.00 33.49 2.52
2856 2868 3.055891 CCCCAAACATTGAAAGATGTCCC 60.056 47.826 0.00 0.00 39.25 4.46
3017 3046 5.806955 TTCTATTAACCCCCATCCAACTT 57.193 39.130 0.00 0.00 0.00 2.66
3060 3089 2.169561 TCCGCAAAGAGCATACACCATA 59.830 45.455 0.00 0.00 46.13 2.74
3114 3144 5.645067 TCATCCATCATCAAGACAACAAGAC 59.355 40.000 0.00 0.00 0.00 3.01
3237 3267 3.153919 TGCCACTTATTTCTGTTGTCCC 58.846 45.455 0.00 0.00 0.00 4.46
3260 3290 7.231317 TCCCTTTGACCTTTGAATATATCATGC 59.769 37.037 0.00 0.00 38.03 4.06
3304 3334 2.818432 AGGAGCATGCTCTTCAAAACAG 59.182 45.455 38.84 0.00 42.38 3.16
3661 3691 6.321435 TGATGATGAGTTCTACAACGACCTAT 59.679 38.462 0.00 0.00 37.61 2.57
4053 4083 9.463443 AATTTGTCAACTAAACTCTAATGCAAC 57.537 29.630 0.00 0.00 0.00 4.17
4161 4191 0.884704 ACACTTGCCCAACTACGCAG 60.885 55.000 0.00 0.00 36.14 5.18
4173 4203 1.002746 TACGCAGCAAAGGATGGCA 60.003 52.632 0.00 0.00 0.00 4.92
4189 4219 0.852136 GGCAAACACAACATTGACGC 59.148 50.000 0.00 0.00 0.00 5.19
4285 4315 0.607620 GCCTAACAAGCCAATGCCAA 59.392 50.000 0.00 0.00 38.69 4.52
4311 4341 4.082190 TGCTCTTCTAGTGAACGTGCTAAT 60.082 41.667 0.00 0.00 0.00 1.73
4323 4353 5.234972 TGAACGTGCTAATATTGATGCTCTG 59.765 40.000 0.00 1.89 0.00 3.35
4446 4476 0.901580 AGGCTGGTGCAATTCCCTTG 60.902 55.000 0.00 0.00 41.91 3.61
4491 4521 0.249911 ACTTGCGGACTCAGGAACAC 60.250 55.000 0.00 0.00 0.00 3.32
4575 4605 0.868406 GTGCTGTGCCTAGTGTTGTC 59.132 55.000 0.00 0.00 0.00 3.18
4626 4656 1.079612 GGAAAATGCTGCAGCCACC 60.080 57.895 34.64 24.04 41.18 4.61
4664 4694 6.588756 TCTGTGGTCGATGAATACAAAGTAAC 59.411 38.462 0.00 0.00 0.00 2.50
4749 4779 3.319926 GAAAGACGCAGCAGCAGCC 62.320 63.158 3.88 0.00 43.56 4.85
5149 5179 0.249197 CGAGCGGATGAGCAGATTCA 60.249 55.000 0.00 0.00 40.15 2.57
5179 5209 4.646572 ACAACAAGAGGAACAGGAATCTC 58.353 43.478 0.00 0.00 0.00 2.75
5244 5274 1.882623 CCTGAACAGGTCCAAGAAAGC 59.117 52.381 12.21 0.00 43.61 3.51
5253 5283 1.130561 GTCCAAGAAAGCGAAATCCCG 59.869 52.381 0.00 0.00 0.00 5.14
5265 5295 2.948979 CGAAATCCCGGATCAATTGGAA 59.051 45.455 0.73 0.00 0.00 3.53
5290 5320 4.104143 CGTCTCAATACCCCACGC 57.896 61.111 0.00 0.00 0.00 5.34
5300 5330 3.637911 ATACCCCACGCTGTTATGAAA 57.362 42.857 0.00 0.00 0.00 2.69
5331 5364 0.541863 ATTGCCCTACCTCTTGGACG 59.458 55.000 0.00 0.00 37.04 4.79
5340 5373 1.971357 ACCTCTTGGACGTGTTCATCT 59.029 47.619 0.00 0.00 37.04 2.90
5341 5374 3.162666 ACCTCTTGGACGTGTTCATCTA 58.837 45.455 0.00 0.00 37.04 1.98
5344 5377 4.568359 CCTCTTGGACGTGTTCATCTATTG 59.432 45.833 0.00 0.00 34.57 1.90
5375 5408 1.399440 CAAGTGGGAGTCAATCATGCG 59.601 52.381 0.00 0.00 0.00 4.73
5383 5416 1.066858 AGTCAATCATGCGAACCGAGT 60.067 47.619 0.00 0.00 0.00 4.18
5401 5434 6.042777 ACCGAGTGATGTAATTATGTGACAG 58.957 40.000 0.00 0.00 0.00 3.51
5472 5505 4.523083 TCCAGCTTGTAACTGAAACACTT 58.477 39.130 0.00 0.00 37.32 3.16
5476 5509 4.034048 AGCTTGTAACTGAAACACTTGTCG 59.966 41.667 0.00 0.00 0.00 4.35
5538 5571 4.070716 CAGCTCTTCAATCCACAGTTTCT 58.929 43.478 0.00 0.00 0.00 2.52
5745 5780 8.432013 TCTGAGACATTATTTGCACATATACCT 58.568 33.333 0.00 0.00 0.00 3.08
5746 5781 9.710900 CTGAGACATTATTTGCACATATACCTA 57.289 33.333 0.00 0.00 0.00 3.08
5747 5782 9.489084 TGAGACATTATTTGCACATATACCTAC 57.511 33.333 0.00 0.00 0.00 3.18
5748 5783 8.534333 AGACATTATTTGCACATATACCTACG 57.466 34.615 0.00 0.00 0.00 3.51
5749 5784 8.148351 AGACATTATTTGCACATATACCTACGT 58.852 33.333 0.00 0.00 0.00 3.57
5750 5785 8.671384 ACATTATTTGCACATATACCTACGTT 57.329 30.769 0.00 0.00 0.00 3.99
5751 5786 9.116067 ACATTATTTGCACATATACCTACGTTT 57.884 29.630 0.00 0.00 0.00 3.60
5752 5787 9.944663 CATTATTTGCACATATACCTACGTTTT 57.055 29.630 0.00 0.00 0.00 2.43
5756 5791 8.951787 TTTGCACATATACCTACGTTTTATCT 57.048 30.769 0.00 0.00 0.00 1.98
5871 5906 2.167281 CTGCATAGACGAGATATGGGGG 59.833 54.545 0.00 0.00 32.35 5.40
5875 5910 4.262894 GCATAGACGAGATATGGGGGAAAA 60.263 45.833 0.00 0.00 32.35 2.29
5878 5913 7.620880 CATAGACGAGATATGGGGGAAAAATA 58.379 38.462 0.00 0.00 0.00 1.40
5879 5914 6.704056 AGACGAGATATGGGGGAAAAATAT 57.296 37.500 0.00 0.00 0.00 1.28
5880 5915 6.712276 AGACGAGATATGGGGGAAAAATATC 58.288 40.000 0.00 0.00 34.75 1.63
5881 5916 5.816682 ACGAGATATGGGGGAAAAATATCC 58.183 41.667 0.00 0.00 34.98 2.59
5882 5917 5.312178 ACGAGATATGGGGGAAAAATATCCA 59.688 40.000 0.00 0.00 41.55 3.41
5883 5918 6.183361 ACGAGATATGGGGGAAAAATATCCAA 60.183 38.462 0.00 0.00 41.55 3.53
5884 5919 6.375455 CGAGATATGGGGGAAAAATATCCAAG 59.625 42.308 0.00 0.00 41.55 3.61
5885 5920 6.565036 AGATATGGGGGAAAAATATCCAAGG 58.435 40.000 0.00 0.00 41.55 3.61
5910 5945 7.543868 GGAAGTATGGAGATCATCATTTACTCG 59.456 40.741 6.20 0.00 37.30 4.18
5983 6018 4.352595 TGGAGTACCTTGGAAAATGAAGGA 59.647 41.667 0.00 0.00 41.26 3.36
5986 6021 1.886542 ACCTTGGAAAATGAAGGACGC 59.113 47.619 0.00 0.00 41.26 5.19
6050 6085 9.225682 TCCTTGGTAATATGAAAGAATCTACCT 57.774 33.333 0.00 0.00 0.00 3.08
6083 6118 1.270041 CGCCCTTCTAATCCTGAGCTC 60.270 57.143 6.82 6.82 0.00 4.09
6084 6119 1.765314 GCCCTTCTAATCCTGAGCTCA 59.235 52.381 17.19 17.19 0.00 4.26
6090 6125 2.497675 TCTAATCCTGAGCTCAAACGCT 59.502 45.455 18.85 4.18 44.33 5.07
6112 6147 6.183360 CGCTCTCTATGAACAGTAAAAACTGG 60.183 42.308 10.08 0.00 41.76 4.00
6169 6204 7.913674 ACTTTTTAGGTGCAAATTTTTGTGA 57.086 28.000 5.05 0.00 40.24 3.58
6211 6291 9.548208 GAAGTAGTCTTTTTGTAGCATTGATTC 57.452 33.333 0.00 0.00 33.64 2.52
6233 6313 3.443045 CCCACGGCACTGGAATGC 61.443 66.667 0.37 0.00 45.34 3.56
6245 6325 2.554032 ACTGGAATGCCTTTTCTTCACG 59.446 45.455 0.00 0.00 34.31 4.35
6259 6339 5.759506 TTCTTCACGGAAATTTGCAAGTA 57.240 34.783 10.49 0.00 0.00 2.24
6296 6378 8.672214 ACAATGTTTGTTGCAAAAAGAAAATC 57.328 26.923 0.00 0.00 42.22 2.17
6297 6379 8.295288 ACAATGTTTGTTGCAAAAAGAAAATCA 58.705 25.926 0.00 0.00 42.22 2.57
6298 6380 8.790674 CAATGTTTGTTGCAAAAAGAAAATCAG 58.209 29.630 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.596772 TGAAAGATCGTGGATGTCACCTATA 59.403 40.000 0.00 0.00 43.23 1.31
1 2 4.405680 TGAAAGATCGTGGATGTCACCTAT 59.594 41.667 0.00 0.00 43.23 2.57
2 3 3.767131 TGAAAGATCGTGGATGTCACCTA 59.233 43.478 0.00 0.00 43.23 3.08
3 4 2.567169 TGAAAGATCGTGGATGTCACCT 59.433 45.455 0.00 0.00 43.23 4.00
4 5 2.932614 CTGAAAGATCGTGGATGTCACC 59.067 50.000 0.00 0.00 38.77 4.02
5 6 3.849911 TCTGAAAGATCGTGGATGTCAC 58.150 45.455 0.00 0.00 38.67 3.67
6 7 4.021104 ACTTCTGAAAGATCGTGGATGTCA 60.021 41.667 0.00 0.00 46.36 3.58
7 8 4.499183 ACTTCTGAAAGATCGTGGATGTC 58.501 43.478 0.00 0.00 46.36 3.06
8 9 4.021104 TGACTTCTGAAAGATCGTGGATGT 60.021 41.667 0.00 0.00 46.36 3.06
9 10 4.498241 TGACTTCTGAAAGATCGTGGATG 58.502 43.478 0.00 0.00 46.36 3.51
10 11 4.808414 TGACTTCTGAAAGATCGTGGAT 57.192 40.909 0.00 0.00 46.36 3.41
11 12 4.220602 TCATGACTTCTGAAAGATCGTGGA 59.779 41.667 13.75 4.02 46.36 4.02
12 13 4.498241 TCATGACTTCTGAAAGATCGTGG 58.502 43.478 13.75 0.00 46.36 4.94
13 14 5.006455 CCATCATGACTTCTGAAAGATCGTG 59.994 44.000 0.00 9.99 46.36 4.35
14 15 5.114780 CCATCATGACTTCTGAAAGATCGT 58.885 41.667 0.00 0.00 46.36 3.73
15 16 4.510711 CCCATCATGACTTCTGAAAGATCG 59.489 45.833 0.00 0.00 46.36 3.69
16 17 5.678583 TCCCATCATGACTTCTGAAAGATC 58.321 41.667 0.00 0.00 46.36 2.75
17 18 5.191323 ACTCCCATCATGACTTCTGAAAGAT 59.809 40.000 0.00 0.00 46.36 2.40
18 19 4.533707 ACTCCCATCATGACTTCTGAAAGA 59.466 41.667 0.00 0.00 44.68 2.52
19 20 4.634883 CACTCCCATCATGACTTCTGAAAG 59.365 45.833 0.00 0.00 38.54 2.62
20 21 4.566278 CCACTCCCATCATGACTTCTGAAA 60.566 45.833 0.00 0.00 0.00 2.69
21 22 3.054875 CCACTCCCATCATGACTTCTGAA 60.055 47.826 0.00 0.00 0.00 3.02
22 23 2.502947 CCACTCCCATCATGACTTCTGA 59.497 50.000 0.00 0.00 0.00 3.27
23 24 2.238144 ACCACTCCCATCATGACTTCTG 59.762 50.000 0.00 0.00 0.00 3.02
24 25 2.238144 CACCACTCCCATCATGACTTCT 59.762 50.000 0.00 0.00 0.00 2.85
25 26 2.026822 ACACCACTCCCATCATGACTTC 60.027 50.000 0.00 0.00 0.00 3.01
26 27 1.988107 ACACCACTCCCATCATGACTT 59.012 47.619 0.00 0.00 0.00 3.01
27 28 1.280133 CACACCACTCCCATCATGACT 59.720 52.381 0.00 0.00 0.00 3.41
28 29 1.679944 CCACACCACTCCCATCATGAC 60.680 57.143 0.00 0.00 0.00 3.06
29 30 0.620030 CCACACCACTCCCATCATGA 59.380 55.000 0.00 0.00 0.00 3.07
30 31 0.620030 TCCACACCACTCCCATCATG 59.380 55.000 0.00 0.00 0.00 3.07
31 32 1.371467 TTCCACACCACTCCCATCAT 58.629 50.000 0.00 0.00 0.00 2.45
32 33 1.073763 CTTTCCACACCACTCCCATCA 59.926 52.381 0.00 0.00 0.00 3.07
33 34 1.614317 CCTTTCCACACCACTCCCATC 60.614 57.143 0.00 0.00 0.00 3.51
34 35 0.405585 CCTTTCCACACCACTCCCAT 59.594 55.000 0.00 0.00 0.00 4.00
35 36 0.696143 TCCTTTCCACACCACTCCCA 60.696 55.000 0.00 0.00 0.00 4.37
36 37 0.036875 CTCCTTTCCACACCACTCCC 59.963 60.000 0.00 0.00 0.00 4.30
37 38 1.056660 TCTCCTTTCCACACCACTCC 58.943 55.000 0.00 0.00 0.00 3.85
38 39 2.930826 TTCTCCTTTCCACACCACTC 57.069 50.000 0.00 0.00 0.00 3.51
39 40 2.158608 CCTTTCTCCTTTCCACACCACT 60.159 50.000 0.00 0.00 0.00 4.00
40 41 2.230660 CCTTTCTCCTTTCCACACCAC 58.769 52.381 0.00 0.00 0.00 4.16
41 42 1.144913 CCCTTTCTCCTTTCCACACCA 59.855 52.381 0.00 0.00 0.00 4.17
42 43 1.423921 TCCCTTTCTCCTTTCCACACC 59.576 52.381 0.00 0.00 0.00 4.16
43 44 2.951229 TCCCTTTCTCCTTTCCACAC 57.049 50.000 0.00 0.00 0.00 3.82
44 45 3.009473 CAGATCCCTTTCTCCTTTCCACA 59.991 47.826 0.00 0.00 0.00 4.17
45 46 3.264450 TCAGATCCCTTTCTCCTTTCCAC 59.736 47.826 0.00 0.00 0.00 4.02
46 47 3.521126 CTCAGATCCCTTTCTCCTTTCCA 59.479 47.826 0.00 0.00 0.00 3.53
47 48 3.118075 CCTCAGATCCCTTTCTCCTTTCC 60.118 52.174 0.00 0.00 0.00 3.13
48 49 3.684130 GCCTCAGATCCCTTTCTCCTTTC 60.684 52.174 0.00 0.00 0.00 2.62
49 50 2.240921 GCCTCAGATCCCTTTCTCCTTT 59.759 50.000 0.00 0.00 0.00 3.11
50 51 1.843206 GCCTCAGATCCCTTTCTCCTT 59.157 52.381 0.00 0.00 0.00 3.36
51 52 1.274069 TGCCTCAGATCCCTTTCTCCT 60.274 52.381 0.00 0.00 0.00 3.69
52 53 1.140652 CTGCCTCAGATCCCTTTCTCC 59.859 57.143 0.00 0.00 32.44 3.71
53 54 2.114616 TCTGCCTCAGATCCCTTTCTC 58.885 52.381 0.00 0.00 35.39 2.87
54 55 2.260639 TCTGCCTCAGATCCCTTTCT 57.739 50.000 0.00 0.00 35.39 2.52
55 56 2.437281 TCATCTGCCTCAGATCCCTTTC 59.563 50.000 6.37 0.00 46.83 2.62
56 57 2.172293 GTCATCTGCCTCAGATCCCTTT 59.828 50.000 6.37 0.00 46.83 3.11
57 58 1.767681 GTCATCTGCCTCAGATCCCTT 59.232 52.381 6.37 0.00 46.83 3.95
58 59 1.422531 GTCATCTGCCTCAGATCCCT 58.577 55.000 6.37 0.00 46.83 4.20
59 60 0.396060 GGTCATCTGCCTCAGATCCC 59.604 60.000 6.37 6.38 46.83 3.85
60 61 0.033228 CGGTCATCTGCCTCAGATCC 59.967 60.000 6.37 5.64 46.83 3.36
61 62 0.599728 GCGGTCATCTGCCTCAGATC 60.600 60.000 6.37 0.00 46.83 2.75
63 64 2.895680 GCGGTCATCTGCCTCAGA 59.104 61.111 0.00 0.00 44.99 3.27
64 65 2.584418 CGCGGTCATCTGCCTCAG 60.584 66.667 0.00 0.00 42.47 3.35
65 66 4.147449 CCGCGGTCATCTGCCTCA 62.147 66.667 19.50 0.00 42.47 3.86
68 69 3.521529 ATAGCCGCGGTCATCTGCC 62.522 63.158 28.70 7.06 42.47 4.85
69 70 2.029666 ATAGCCGCGGTCATCTGC 59.970 61.111 28.70 10.37 42.06 4.26
70 71 1.665916 CCATAGCCGCGGTCATCTG 60.666 63.158 28.70 16.38 0.00 2.90
71 72 2.134287 ACCATAGCCGCGGTCATCT 61.134 57.895 28.70 17.60 0.00 2.90
72 73 1.956170 CACCATAGCCGCGGTCATC 60.956 63.158 28.70 10.05 31.41 2.92
73 74 2.108976 CACCATAGCCGCGGTCAT 59.891 61.111 28.70 17.25 31.41 3.06
74 75 4.155733 CCACCATAGCCGCGGTCA 62.156 66.667 28.70 15.53 31.41 4.02
75 76 4.910585 CCCACCATAGCCGCGGTC 62.911 72.222 28.70 19.09 31.41 4.79
80 81 4.488136 TGCTGCCCACCATAGCCG 62.488 66.667 0.00 0.00 36.64 5.52
81 82 2.517875 CTGCTGCCCACCATAGCC 60.518 66.667 0.00 0.00 36.64 3.93
82 83 1.525535 CTCTGCTGCCCACCATAGC 60.526 63.158 0.00 0.00 37.93 2.97
83 84 1.147824 CCTCTGCTGCCCACCATAG 59.852 63.158 0.00 0.00 0.00 2.23
84 85 2.377810 CCCTCTGCTGCCCACCATA 61.378 63.158 0.00 0.00 0.00 2.74
85 86 3.736224 CCCTCTGCTGCCCACCAT 61.736 66.667 0.00 0.00 0.00 3.55
86 87 4.980592 TCCCTCTGCTGCCCACCA 62.981 66.667 0.00 0.00 0.00 4.17
87 88 4.416738 GTCCCTCTGCTGCCCACC 62.417 72.222 0.00 0.00 0.00 4.61
88 89 4.767255 CGTCCCTCTGCTGCCCAC 62.767 72.222 0.00 0.00 0.00 4.61
91 92 3.474570 ATCCGTCCCTCTGCTGCC 61.475 66.667 0.00 0.00 0.00 4.85
92 93 2.202987 CATCCGTCCCTCTGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
93 94 2.503061 CCATCCGTCCCTCTGCTG 59.497 66.667 0.00 0.00 0.00 4.41
94 95 2.765807 CCCATCCGTCCCTCTGCT 60.766 66.667 0.00 0.00 0.00 4.24
95 96 3.083997 ACCCATCCGTCCCTCTGC 61.084 66.667 0.00 0.00 0.00 4.26
96 97 2.735772 CCACCCATCCGTCCCTCTG 61.736 68.421 0.00 0.00 0.00 3.35
97 98 2.365635 CCACCCATCCGTCCCTCT 60.366 66.667 0.00 0.00 0.00 3.69
98 99 2.687566 ACCACCCATCCGTCCCTC 60.688 66.667 0.00 0.00 0.00 4.30
99 100 3.009115 CACCACCCATCCGTCCCT 61.009 66.667 0.00 0.00 0.00 4.20
100 101 3.325201 GACACCACCCATCCGTCCC 62.325 68.421 0.00 0.00 0.00 4.46
101 102 2.267961 GACACCACCCATCCGTCC 59.732 66.667 0.00 0.00 0.00 4.79
102 103 2.125673 CGACACCACCCATCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
103 104 3.702048 CCGACACCACCCATCCGT 61.702 66.667 0.00 0.00 0.00 4.69
104 105 3.371097 CTCCGACACCACCCATCCG 62.371 68.421 0.00 0.00 0.00 4.18
105 106 0.974010 TACTCCGACACCACCCATCC 60.974 60.000 0.00 0.00 0.00 3.51
106 107 0.460311 CTACTCCGACACCACCCATC 59.540 60.000 0.00 0.00 0.00 3.51
107 108 1.614241 GCTACTCCGACACCACCCAT 61.614 60.000 0.00 0.00 0.00 4.00
108 109 2.280552 GCTACTCCGACACCACCCA 61.281 63.158 0.00 0.00 0.00 4.51
109 110 1.982938 AGCTACTCCGACACCACCC 60.983 63.158 0.00 0.00 0.00 4.61
110 111 1.215647 CAGCTACTCCGACACCACC 59.784 63.158 0.00 0.00 0.00 4.61
111 112 1.446272 GCAGCTACTCCGACACCAC 60.446 63.158 0.00 0.00 0.00 4.16
112 113 2.646175 GGCAGCTACTCCGACACCA 61.646 63.158 0.00 0.00 0.00 4.17
113 114 2.184579 GGCAGCTACTCCGACACC 59.815 66.667 0.00 0.00 0.00 4.16
114 115 1.139947 GAGGCAGCTACTCCGACAC 59.860 63.158 6.37 0.00 0.00 3.67
115 116 1.304134 TGAGGCAGCTACTCCGACA 60.304 57.895 13.32 6.46 34.06 4.35
116 117 1.435515 CTGAGGCAGCTACTCCGAC 59.564 63.158 13.32 4.44 34.06 4.79
117 118 3.926003 CTGAGGCAGCTACTCCGA 58.074 61.111 13.32 0.00 34.06 4.55
128 129 0.950555 TGACACACGATTGCTGAGGC 60.951 55.000 0.00 0.00 39.26 4.70
129 130 1.730501 ATGACACACGATTGCTGAGG 58.269 50.000 0.00 0.00 0.00 3.86
130 131 4.926860 TTAATGACACACGATTGCTGAG 57.073 40.909 0.00 0.00 0.00 3.35
131 132 4.694982 ACATTAATGACACACGATTGCTGA 59.305 37.500 22.16 0.00 0.00 4.26
132 133 4.789629 CACATTAATGACACACGATTGCTG 59.210 41.667 22.16 1.29 0.00 4.41
133 134 4.142622 CCACATTAATGACACACGATTGCT 60.143 41.667 22.16 0.00 0.00 3.91
134 135 4.097714 CCACATTAATGACACACGATTGC 58.902 43.478 22.16 0.00 0.00 3.56
135 136 4.661125 CCCACATTAATGACACACGATTG 58.339 43.478 22.16 6.23 0.00 2.67
136 137 3.128589 GCCCACATTAATGACACACGATT 59.871 43.478 22.16 0.00 0.00 3.34
137 138 2.682856 GCCCACATTAATGACACACGAT 59.317 45.455 22.16 0.00 0.00 3.73
138 139 2.080693 GCCCACATTAATGACACACGA 58.919 47.619 22.16 0.00 0.00 4.35
139 140 1.202020 CGCCCACATTAATGACACACG 60.202 52.381 22.16 13.62 0.00 4.49
140 141 2.080693 TCGCCCACATTAATGACACAC 58.919 47.619 22.16 6.36 0.00 3.82
141 142 2.080693 GTCGCCCACATTAATGACACA 58.919 47.619 22.16 0.00 0.00 3.72
142 143 2.080693 TGTCGCCCACATTAATGACAC 58.919 47.619 22.16 7.33 31.93 3.67
143 144 2.027653 TCTGTCGCCCACATTAATGACA 60.028 45.455 22.16 12.77 33.23 3.58
144 145 2.627945 TCTGTCGCCCACATTAATGAC 58.372 47.619 22.16 8.87 33.23 3.06
145 146 3.270027 CTTCTGTCGCCCACATTAATGA 58.730 45.455 22.16 0.00 33.23 2.57
146 147 2.355756 CCTTCTGTCGCCCACATTAATG 59.644 50.000 14.01 14.01 33.23 1.90
160 161 1.366366 CACCCGTTCGTCCTTCTGT 59.634 57.895 0.00 0.00 0.00 3.41
161 162 1.374252 CCACCCGTTCGTCCTTCTG 60.374 63.158 0.00 0.00 0.00 3.02
181 182 2.541556 TCATGTTCAAACGACACGACA 58.458 42.857 0.00 0.00 0.00 4.35
266 267 1.002990 TACCTCTCACTGTCGCCGA 60.003 57.895 0.00 0.00 0.00 5.54
272 273 1.169577 CAGACGCTACCTCTCACTGT 58.830 55.000 0.00 0.00 0.00 3.55
274 275 2.185238 GCAGACGCTACCTCTCACT 58.815 57.895 0.00 0.00 34.30 3.41
301 302 0.106708 ATCGGTGCCGTATTCATGCT 59.893 50.000 10.60 0.00 40.74 3.79
383 384 1.258445 ATCTGACCGTCCTGACCCAC 61.258 60.000 0.00 0.00 0.00 4.61
393 394 0.741326 CCGACATCTCATCTGACCGT 59.259 55.000 0.00 0.00 0.00 4.83
396 397 2.534298 CACACCGACATCTCATCTGAC 58.466 52.381 0.00 0.00 0.00 3.51
401 402 0.107993 CTGCCACACCGACATCTCAT 60.108 55.000 0.00 0.00 0.00 2.90
402 403 1.293179 CTGCCACACCGACATCTCA 59.707 57.895 0.00 0.00 0.00 3.27
403 404 2.103042 GCTGCCACACCGACATCTC 61.103 63.158 0.00 0.00 0.00 2.75
404 405 2.046892 GCTGCCACACCGACATCT 60.047 61.111 0.00 0.00 0.00 2.90
405 406 3.490759 CGCTGCCACACCGACATC 61.491 66.667 0.00 0.00 0.00 3.06
432 433 0.250234 TCAGACGGAGGATTTGCTGG 59.750 55.000 0.00 0.00 0.00 4.85
445 446 1.487231 CGCAAACCGAAGTCAGACG 59.513 57.895 0.00 0.00 40.02 4.18
471 472 1.466950 CGCAAAACGGTATGGACATGT 59.533 47.619 0.00 0.00 38.44 3.21
472 473 2.172593 CGCAAAACGGTATGGACATG 57.827 50.000 0.00 0.00 38.44 3.21
483 484 0.791422 TTGTATCGGTCCGCAAAACG 59.209 50.000 6.34 0.00 43.15 3.60
484 485 2.973419 TTTGTATCGGTCCGCAAAAC 57.027 45.000 6.34 2.42 0.00 2.43
485 486 2.420722 GGATTTGTATCGGTCCGCAAAA 59.579 45.455 16.24 10.06 34.99 2.44
486 487 2.011222 GGATTTGTATCGGTCCGCAAA 58.989 47.619 15.09 15.09 35.66 3.68
487 488 1.658994 GGATTTGTATCGGTCCGCAA 58.341 50.000 6.34 2.25 0.00 4.85
514 515 7.067008 CCAAACTATTCAGACCACGGAAATTAT 59.933 37.037 0.00 0.00 34.38 1.28
518 519 4.069304 CCAAACTATTCAGACCACGGAAA 58.931 43.478 0.00 0.00 34.38 3.13
521 522 3.000727 GACCAAACTATTCAGACCACGG 58.999 50.000 0.00 0.00 0.00 4.94
525 526 2.235402 TCCGGACCAAACTATTCAGACC 59.765 50.000 0.00 0.00 0.00 3.85
526 527 3.604875 TCCGGACCAAACTATTCAGAC 57.395 47.619 0.00 0.00 0.00 3.51
531 532 4.969484 GGATACATCCGGACCAAACTATT 58.031 43.478 6.12 0.00 37.19 1.73
547 548 2.473070 TCCTCAAATGACCGGGATACA 58.527 47.619 6.32 0.28 39.74 2.29
559 560 1.819632 GACGCGCCCATCCTCAAAT 60.820 57.895 5.73 0.00 0.00 2.32
577 578 3.614159 TTATACCGTGAGATCGTTCCG 57.386 47.619 0.00 0.00 0.00 4.30
623 624 4.464008 TGATTGAAGAAACTGCCAGAAGT 58.536 39.130 0.00 0.00 0.00 3.01
626 627 5.593909 TCTTTTGATTGAAGAAACTGCCAGA 59.406 36.000 0.00 0.00 30.60 3.86
668 669 1.584175 TTGTTGCGTATTCGTGTGGT 58.416 45.000 0.00 0.00 39.49 4.16
693 694 9.871299 AAAACAAACTTTGTGAAAATTGTACAC 57.129 25.926 7.93 0.00 44.59 2.90
934 935 4.266543 TGGCACGGGGCGGTAAAA 62.267 61.111 6.78 0.00 46.16 1.52
1146 1147 2.732619 GGGTCCGAGGAGGCGAATT 61.733 63.158 0.00 0.00 40.77 2.17
1284 1285 2.567615 ACGTACCAAAGAGATCCTGCTT 59.432 45.455 0.00 0.00 0.00 3.91
1342 1343 0.101399 CGAGGACCAGGAATCTGACG 59.899 60.000 0.00 0.00 43.49 4.35
1368 1369 1.483004 TGAATCTAATTCGCCCACGGA 59.517 47.619 0.00 0.00 42.15 4.69
1426 1427 1.717194 TAGCCAAGGTTAAAGTCGCG 58.283 50.000 0.00 0.00 0.00 5.87
1427 1428 2.223272 GCATAGCCAAGGTTAAAGTCGC 60.223 50.000 0.00 0.00 0.00 5.19
1428 1429 3.675467 GCATAGCCAAGGTTAAAGTCG 57.325 47.619 0.00 0.00 0.00 4.18
1521 1522 9.529325 CAATATGCAGATCAGAATCACAATTTT 57.471 29.630 0.00 0.00 34.07 1.82
1524 1525 7.818997 ACAATATGCAGATCAGAATCACAAT 57.181 32.000 0.00 0.00 34.07 2.71
1538 1539 3.255725 CAAGGCCACAAACAATATGCAG 58.744 45.455 5.01 0.00 0.00 4.41
1591 1593 2.516227 TGGAACACCAAAGGTTCACA 57.484 45.000 7.48 1.29 44.96 3.58
1626 1628 7.698130 CCGCACTTCAGATAAAAAGGAAAATAG 59.302 37.037 0.00 0.00 0.00 1.73
1685 1687 9.921637 AATTTTAGTGAACAGAAAAGAACAACA 57.078 25.926 0.00 0.00 0.00 3.33
1805 1808 7.346960 AGCCATTAATTACATAAACCCAACCAT 59.653 33.333 0.00 0.00 0.00 3.55
1883 1886 7.382488 AGACGAAAACAGATCATAATACGATGG 59.618 37.037 0.00 0.00 0.00 3.51
1893 1896 4.932200 GGAGAACAGACGAAAACAGATCAT 59.068 41.667 0.00 0.00 0.00 2.45
1991 1994 6.245408 TGTGCTTTGGTATGTTTTATCCTCT 58.755 36.000 0.00 0.00 0.00 3.69
2046 2049 0.405198 TGGATCATGGGTGCACAAGT 59.595 50.000 20.43 0.00 0.00 3.16
2072 2075 6.420604 CGGACAGCAAAATAACAAACAAATCT 59.579 34.615 0.00 0.00 0.00 2.40
2075 2078 5.411781 ACGGACAGCAAAATAACAAACAAA 58.588 33.333 0.00 0.00 0.00 2.83
2076 2079 5.000012 ACGGACAGCAAAATAACAAACAA 58.000 34.783 0.00 0.00 0.00 2.83
2077 2080 4.640789 ACGGACAGCAAAATAACAAACA 57.359 36.364 0.00 0.00 0.00 2.83
2078 2081 5.051307 GGAAACGGACAGCAAAATAACAAAC 60.051 40.000 0.00 0.00 0.00 2.93
2079 2082 5.044558 GGAAACGGACAGCAAAATAACAAA 58.955 37.500 0.00 0.00 0.00 2.83
2097 2100 6.710744 TGAGGAGAAGAAAACATGTAGGAAAC 59.289 38.462 0.00 0.00 0.00 2.78
2161 2164 2.778299 TGGAAAGATTTCAGGACCACG 58.222 47.619 7.56 0.00 38.92 4.94
2243 2246 6.638873 GTGTGTCTGATATCCTTAGAATCACG 59.361 42.308 0.00 0.00 0.00 4.35
2328 2331 6.533723 TGTTGTTGTTGTTGTTGTTGTTGTTA 59.466 30.769 0.00 0.00 0.00 2.41
2329 2332 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2330 2333 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2331 2334 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2332 2335 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2333 2336 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2334 2337 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2335 2338 6.610741 ATTGTTGTTGTTGTTGTTGTTGTT 57.389 29.167 0.00 0.00 0.00 2.83
2336 2339 7.224753 TGTTATTGTTGTTGTTGTTGTTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2337 2340 7.567571 TGTTATTGTTGTTGTTGTTGTTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2338 2341 7.715265 TGTTATTGTTGTTGTTGTTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2339 2342 7.224753 TGTTGTTATTGTTGTTGTTGTTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2340 2343 7.567571 TGTTGTTATTGTTGTTGTTGTTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2341 2344 7.715265 TGTTGTTATTGTTGTTGTTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2342 2345 7.224753 TGTTGTTGTTATTGTTGTTGTTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2343 2346 7.567571 TGTTGTTGTTATTGTTGTTGTTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2344 2347 7.715265 TGTTGTTGTTATTGTTGTTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2345 2348 7.224753 TGTTGTTGTTGTTATTGTTGTTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2346 2349 7.567571 TGTTGTTGTTGTTATTGTTGTTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2347 2350 7.715265 TGTTGTTGTTGTTATTGTTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2348 2351 7.224753 TGTTGTTGTTGTTGTTATTGTTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2349 2352 7.567571 TGTTGTTGTTGTTGTTATTGTTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2350 2353 7.715265 TGTTGTTGTTGTTGTTATTGTTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2351 2354 7.224753 TGTTGTTGTTGTTGTTGTTATTGTTGT 59.775 29.630 0.00 0.00 0.00 3.32
2352 2355 7.567571 TGTTGTTGTTGTTGTTGTTATTGTTG 58.432 30.769 0.00 0.00 0.00 3.33
2353 2356 7.715265 TGTTGTTGTTGTTGTTGTTATTGTT 57.285 28.000 0.00 0.00 0.00 2.83
2354 2357 7.715265 TTGTTGTTGTTGTTGTTGTTATTGT 57.285 28.000 0.00 0.00 0.00 2.71
2355 2358 7.268023 GCTTTGTTGTTGTTGTTGTTGTTATTG 59.732 33.333 0.00 0.00 0.00 1.90
2356 2359 7.294473 GCTTTGTTGTTGTTGTTGTTGTTATT 58.706 30.769 0.00 0.00 0.00 1.40
2357 2360 6.128418 GGCTTTGTTGTTGTTGTTGTTGTTAT 60.128 34.615 0.00 0.00 0.00 1.89
2358 2361 5.177696 GGCTTTGTTGTTGTTGTTGTTGTTA 59.822 36.000 0.00 0.00 0.00 2.41
2359 2362 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2360 2363 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2361 2364 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2362 2365 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2363 2366 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2364 2367 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2365 2368 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2366 2369 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2370 2373 5.831997 AGCTAACTAAAGGCTTTGTTGTTG 58.168 37.500 22.32 16.33 31.81 3.33
2431 2434 1.589414 AGGCTAGAGCTGAAACCCAT 58.411 50.000 0.00 0.00 41.70 4.00
2541 2544 8.378565 GGTCTGGAATGATTCTAAGGATATCAA 58.621 37.037 4.83 0.00 32.54 2.57
2608 2611 3.181445 ACAGTTGGGTGTAGCAGAAATGA 60.181 43.478 0.00 0.00 0.00 2.57
2636 2639 1.605058 GGCTGACTAGAGGGCGACAA 61.605 60.000 0.00 0.00 0.00 3.18
2663 2666 0.179140 CCACAATGTTGTATGGCGCC 60.179 55.000 22.73 22.73 39.91 6.53
2828 2838 4.026744 TCTTTCAATGTTTGGGGTCAACA 58.973 39.130 0.00 0.00 31.78 3.33
2850 2862 1.192428 GTGGTAACTCGGAGGGACAT 58.808 55.000 10.23 0.00 37.61 3.06
2856 2868 0.172803 CGGAAGGTGGTAACTCGGAG 59.827 60.000 2.83 2.83 37.61 4.63
3017 3046 4.135747 TGATGTGGTGCTAATCGATGAA 57.864 40.909 0.00 0.00 0.00 2.57
3060 3089 3.181390 AGGGGCATACAAGGAGATATCCT 60.181 47.826 2.07 2.07 43.04 3.24
3077 3106 1.077429 GGATGAGGTCACAAGGGGC 60.077 63.158 0.00 0.00 0.00 5.80
3114 3144 2.261215 GGTCAGCTTTGAGCCCTTG 58.739 57.895 0.00 0.00 43.77 3.61
3197 3227 7.388437 AGTGGCAAAATGACAACATCAATAAT 58.612 30.769 0.00 0.00 36.98 1.28
3237 3267 7.944061 TGGCATGATATATTCAAAGGTCAAAG 58.056 34.615 0.00 0.00 38.03 2.77
3359 3389 3.256879 TCAAAAACCTGCAAGAACACACA 59.743 39.130 0.00 0.00 34.07 3.72
3360 3390 3.843999 TCAAAAACCTGCAAGAACACAC 58.156 40.909 0.00 0.00 34.07 3.82
3442 3472 5.875224 TCCAGTTCATTGTATGGAAAGTCA 58.125 37.500 5.24 0.00 38.86 3.41
3522 3552 6.361433 TCAGTACTCCTCAACAATCCAAAAA 58.639 36.000 0.00 0.00 0.00 1.94
3561 3591 4.256920 CCTGGAGAGGATTGTTAAGTGTG 58.743 47.826 0.00 0.00 42.93 3.82
4161 4191 1.866601 GTTGTGTTTGCCATCCTTTGC 59.133 47.619 0.00 0.00 0.00 3.68
4173 4203 2.926838 GTTTGGCGTCAATGTTGTGTTT 59.073 40.909 1.89 0.00 32.28 2.83
4189 4219 6.936279 TGAGACTTCTAAGGACATAGTTTGG 58.064 40.000 0.00 0.00 0.00 3.28
4285 4315 3.579709 CACGTTCACTAGAAGAGCATGT 58.420 45.455 0.00 0.00 33.63 3.21
4311 4341 9.276590 CATAACTTGGATAACAGAGCATCAATA 57.723 33.333 0.00 0.00 37.82 1.90
4323 4353 5.755861 GTCTGGAGAGCATAACTTGGATAAC 59.244 44.000 0.00 0.00 0.00 1.89
4446 4476 6.362016 CAGATGACGATAACAGACTCAATAGC 59.638 42.308 0.00 0.00 0.00 2.97
4491 4521 1.783284 TCAGAAGTGCAGTAACAGCG 58.217 50.000 0.00 0.00 33.85 5.18
4575 4605 1.134367 CTGCCATTCTTCAGCACATGG 59.866 52.381 0.00 0.00 39.48 3.66
4626 4656 3.339141 GACCACAGAGAGGCTAAAAAGG 58.661 50.000 0.00 0.00 0.00 3.11
4664 4694 2.275418 CCCCTGTTCCCCCAATCG 59.725 66.667 0.00 0.00 0.00 3.34
4749 4779 4.278170 TGGTAAATGCACAAGTTGAAGAGG 59.722 41.667 10.54 0.00 0.00 3.69
5149 5179 4.277476 TGTTCCTCTTGTTGTTGAACCAT 58.723 39.130 0.00 0.00 35.58 3.55
5201 5231 0.671781 CTGAGGGAGAACTTGTGCCG 60.672 60.000 0.00 0.00 0.00 5.69
5244 5274 2.571212 TCCAATTGATCCGGGATTTCG 58.429 47.619 11.57 0.00 0.00 3.46
5253 5283 1.405463 GCCGGACTTTCCAATTGATCC 59.595 52.381 5.05 4.99 35.91 3.36
5265 5295 0.175073 GGTATTGAGACGCCGGACTT 59.825 55.000 5.05 0.00 0.00 3.01
5300 5330 0.255890 AGGGCAATATCGGCACTGTT 59.744 50.000 3.47 0.00 44.92 3.16
5331 5364 5.346281 GCGCTAGTATCCAATAGATGAACAC 59.654 44.000 0.00 0.00 36.33 3.32
5340 5373 3.244078 CCCACTTGCGCTAGTATCCAATA 60.244 47.826 23.66 0.00 0.00 1.90
5341 5374 2.485479 CCCACTTGCGCTAGTATCCAAT 60.485 50.000 23.66 0.00 0.00 3.16
5344 5377 0.750850 TCCCACTTGCGCTAGTATCC 59.249 55.000 23.66 0.00 0.00 2.59
5375 5408 6.533723 TGTCACATAATTACATCACTCGGTTC 59.466 38.462 0.00 0.00 0.00 3.62
5383 5416 5.130975 AGAGGCCTGTCACATAATTACATCA 59.869 40.000 12.00 0.00 0.00 3.07
5472 5505 4.612412 GCCCACGACAACCCGACA 62.612 66.667 0.00 0.00 0.00 4.35
5476 5509 2.282180 ACATGCCCACGACAACCC 60.282 61.111 0.00 0.00 0.00 4.11
5501 5534 5.658634 TGAAGAGCTGTACATACCTCAAGAT 59.341 40.000 16.08 0.00 0.00 2.40
5538 5571 3.069443 TGTTCTGCGGCTACATGATATCA 59.931 43.478 8.10 8.10 0.00 2.15
5620 5653 9.238368 CTAGTTAAACCCACCATAAAATCTTCA 57.762 33.333 0.00 0.00 0.00 3.02
5663 5696 1.661178 GCAAATGTGACACAGTGCGAG 60.661 52.381 23.58 10.88 34.71 5.03
5667 5700 3.358707 ACATGCAAATGTGACACAGTG 57.641 42.857 14.66 14.71 32.79 3.66
5745 5780 8.659925 TGACACTTTAACCAAGATAAAACGTA 57.340 30.769 0.00 0.00 36.21 3.57
5746 5781 7.556733 TGACACTTTAACCAAGATAAAACGT 57.443 32.000 0.00 0.00 36.21 3.99
5747 5782 7.749126 GGATGACACTTTAACCAAGATAAAACG 59.251 37.037 0.00 0.00 36.21 3.60
5748 5783 8.793592 AGGATGACACTTTAACCAAGATAAAAC 58.206 33.333 0.00 0.00 36.21 2.43
5749 5784 8.792633 CAGGATGACACTTTAACCAAGATAAAA 58.207 33.333 0.00 0.00 39.69 1.52
5750 5785 8.160765 TCAGGATGACACTTTAACCAAGATAAA 58.839 33.333 0.00 0.00 42.56 1.40
5751 5786 7.685481 TCAGGATGACACTTTAACCAAGATAA 58.315 34.615 0.00 0.00 42.56 1.75
5752 5787 7.252612 TCAGGATGACACTTTAACCAAGATA 57.747 36.000 0.00 0.00 42.56 1.98
5753 5788 6.126863 TCAGGATGACACTTTAACCAAGAT 57.873 37.500 0.00 0.00 42.56 2.40
5754 5789 5.560722 TCAGGATGACACTTTAACCAAGA 57.439 39.130 0.00 0.00 42.56 3.02
5871 5906 8.980481 TCTCCATACTTCCTTGGATATTTTTC 57.020 34.615 0.00 0.00 41.09 2.29
5875 5910 7.878621 TGATCTCCATACTTCCTTGGATATT 57.121 36.000 0.00 0.00 41.09 1.28
5878 5913 5.848369 TGATGATCTCCATACTTCCTTGGAT 59.152 40.000 0.00 0.00 41.09 3.41
5879 5914 5.218959 TGATGATCTCCATACTTCCTTGGA 58.781 41.667 0.00 0.00 39.70 3.53
5880 5915 5.557576 TGATGATCTCCATACTTCCTTGG 57.442 43.478 0.00 0.00 35.17 3.61
5881 5916 8.997323 GTAAATGATGATCTCCATACTTCCTTG 58.003 37.037 0.00 0.00 35.17 3.61
5882 5917 8.943085 AGTAAATGATGATCTCCATACTTCCTT 58.057 33.333 0.00 0.00 35.17 3.36
5883 5918 8.503428 AGTAAATGATGATCTCCATACTTCCT 57.497 34.615 0.00 0.00 35.17 3.36
5884 5919 7.543868 CGAGTAAATGATGATCTCCATACTTCC 59.456 40.741 0.00 0.00 35.17 3.46
5885 5920 8.085296 ACGAGTAAATGATGATCTCCATACTTC 58.915 37.037 0.00 0.00 35.17 3.01
5910 5945 3.329929 AGTAAATCCCTCACCGTTCAC 57.670 47.619 0.00 0.00 0.00 3.18
5986 6021 2.228138 AGCACTGCAAACACCATTTG 57.772 45.000 3.30 0.00 0.00 2.32
6000 6035 1.755179 ACAACACTGAGCAAAGCACT 58.245 45.000 0.00 0.00 0.00 4.40
6001 6036 2.566952 AACAACACTGAGCAAAGCAC 57.433 45.000 0.00 0.00 0.00 4.40
6050 6085 4.216411 AGAAGGGCGCTTTTGAAGTATA 57.784 40.909 17.99 0.00 0.00 1.47
6058 6093 2.026262 TCAGGATTAGAAGGGCGCTTTT 60.026 45.455 17.99 14.48 0.00 2.27
6083 6118 6.706055 TTTACTGTTCATAGAGAGCGTTTG 57.294 37.500 0.00 0.00 0.00 2.93
6084 6119 7.441458 AGTTTTTACTGTTCATAGAGAGCGTTT 59.559 33.333 0.00 0.00 0.00 3.60
6145 6180 7.913674 TCACAAAAATTTGCACCTAAAAAGT 57.086 28.000 5.82 0.00 41.79 2.66
6153 6188 6.957150 TGATTTCATCACAAAAATTTGCACC 58.043 32.000 5.82 0.00 41.79 5.01
6169 6204 7.628234 AGACTACTTCAGGAATGTGATTTCAT 58.372 34.615 0.00 0.00 0.00 2.57
6178 6213 7.173218 TGCTACAAAAAGACTACTTCAGGAATG 59.827 37.037 0.00 0.00 35.05 2.67
6211 6291 0.821711 TTCCAGTGCCGTGGGAAAAG 60.822 55.000 1.75 0.00 37.74 2.27
6233 6313 4.367450 TGCAAATTTCCGTGAAGAAAAGG 58.633 39.130 0.00 0.00 39.11 3.11
6234 6314 5.519927 ACTTGCAAATTTCCGTGAAGAAAAG 59.480 36.000 0.00 0.00 39.11 2.27
6245 6325 7.035004 TGAATGCTACATACTTGCAAATTTCC 58.965 34.615 0.00 0.00 40.24 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.