Multiple sequence alignment - TraesCS5A01G077900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G077900 chr5A 100.000 2621 0 0 1 2621 94800428 94797808 0.000000e+00 4841.0
1 TraesCS5A01G077900 chr5A 89.109 101 10 1 28 128 547720860 547720761 9.850000e-25 124.0
2 TraesCS5A01G077900 chr5D 94.036 1509 56 15 412 1894 103603125 103604625 0.000000e+00 2257.0
3 TraesCS5A01G077900 chr5D 92.946 482 32 2 2140 2621 241110403 241110882 0.000000e+00 701.0
4 TraesCS5A01G077900 chr5D 92.116 482 38 0 2140 2621 370623646 370623165 0.000000e+00 680.0
5 TraesCS5A01G077900 chr5D 89.069 247 18 4 1893 2131 103611297 103611542 5.480000e-77 298.0
6 TraesCS5A01G077900 chr5B 94.536 1281 40 8 720 1994 112531584 112532840 0.000000e+00 1951.0
7 TraesCS5A01G077900 chr5B 87.092 736 49 17 11 727 112530720 112531428 0.000000e+00 791.0
8 TraesCS5A01G077900 chr5B 86.325 117 11 4 10 125 118505311 118505423 3.540000e-24 122.0
9 TraesCS5A01G077900 chr3A 93.976 498 29 1 2125 2621 94170622 94171119 0.000000e+00 752.0
10 TraesCS5A01G077900 chr3A 89.320 103 10 1 26 128 8233886 8233987 7.610000e-26 128.0
11 TraesCS5A01G077900 chr3A 82.143 140 15 4 52 181 627995530 627995391 7.670000e-21 111.0
12 TraesCS5A01G077900 chr7D 92.418 488 35 2 2135 2621 150754848 150755334 0.000000e+00 695.0
13 TraesCS5A01G077900 chr7D 88.070 285 28 5 251 531 618322691 618322973 1.500000e-87 333.0
14 TraesCS5A01G077900 chr1D 92.340 483 37 0 2139 2621 461541668 461542150 0.000000e+00 688.0
15 TraesCS5A01G077900 chr3D 91.992 487 36 3 2135 2621 571056805 571056322 0.000000e+00 680.0
16 TraesCS5A01G077900 chr3D 92.133 483 35 2 2139 2621 537037544 537038023 0.000000e+00 678.0
17 TraesCS5A01G077900 chr3D 88.519 270 30 1 262 530 233202356 233202087 2.520000e-85 326.0
18 TraesCS5A01G077900 chr3D 85.714 287 39 2 249 533 549101995 549101709 4.240000e-78 302.0
19 TraesCS5A01G077900 chr1B 91.942 484 39 0 2138 2621 538198634 538199117 0.000000e+00 678.0
20 TraesCS5A01G077900 chr1B 87.241 290 33 3 248 533 249239323 249239034 6.990000e-86 327.0
21 TraesCS5A01G077900 chr6D 91.892 481 39 0 2141 2621 131933353 131932873 0.000000e+00 673.0
22 TraesCS5A01G077900 chr2D 88.612 281 31 1 251 530 332586756 332586476 8.980000e-90 340.0
23 TraesCS5A01G077900 chr7B 88.298 282 29 3 251 528 712736985 712737266 4.180000e-88 335.0
24 TraesCS5A01G077900 chr7A 87.368 285 32 3 251 531 712060278 712060562 9.050000e-85 324.0
25 TraesCS5A01G077900 chr6A 87.097 279 30 5 260 533 477512144 477511867 7.040000e-81 311.0
26 TraesCS5A01G077900 chr3B 85.526 76 9 2 16 91 427164362 427164435 7.780000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G077900 chr5A 94797808 94800428 2620 True 4841 4841 100.000 1 2621 1 chr5A.!!$R1 2620
1 TraesCS5A01G077900 chr5D 103603125 103604625 1500 False 2257 2257 94.036 412 1894 1 chr5D.!!$F1 1482
2 TraesCS5A01G077900 chr5B 112530720 112532840 2120 False 1371 1951 90.814 11 1994 2 chr5B.!!$F2 1983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 1083 0.029989 ACCTTATCCTCCCACTCCCC 60.03 60.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2563 0.028242 ACGCTGTCGCTTCTAGATCG 59.972 55.0 8.19 8.19 39.84 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 0.909623 ACCTAGGGACCAAACATCCG 59.090 55.000 14.81 0.00 37.08 4.18
209 210 3.059188 CAGTTTGGATGTACGGTGTGTTC 60.059 47.826 0.00 0.00 0.00 3.18
216 217 4.201647 GGATGTACGGTGTGTTCGTATTTG 60.202 45.833 0.00 0.00 43.53 2.32
226 227 4.214545 TGTGTTCGTATTTGGTCAACATCC 59.785 41.667 0.00 0.00 30.06 3.51
232 233 4.330074 CGTATTTGGTCAACATCCTGTCTC 59.670 45.833 0.00 0.00 0.00 3.36
237 238 0.119155 TCAACATCCTGTCTCCCCCT 59.881 55.000 0.00 0.00 0.00 4.79
238 239 0.995024 CAACATCCTGTCTCCCCCTT 59.005 55.000 0.00 0.00 0.00 3.95
239 240 1.065126 CAACATCCTGTCTCCCCCTTC 60.065 57.143 0.00 0.00 0.00 3.46
240 241 0.419459 ACATCCTGTCTCCCCCTTCT 59.581 55.000 0.00 0.00 0.00 2.85
241 242 1.127343 CATCCTGTCTCCCCCTTCTC 58.873 60.000 0.00 0.00 0.00 2.87
242 243 0.719015 ATCCTGTCTCCCCCTTCTCA 59.281 55.000 0.00 0.00 0.00 3.27
243 244 0.041833 TCCTGTCTCCCCCTTCTCAG 59.958 60.000 0.00 0.00 0.00 3.35
257 258 5.938710 CCCCTTCTCAGTTTTTAAGACTACC 59.061 44.000 0.00 0.00 0.00 3.18
258 259 6.465321 CCCCTTCTCAGTTTTTAAGACTACCA 60.465 42.308 0.00 0.00 0.00 3.25
268 269 8.101419 AGTTTTTAAGACTACCAATAGTGAGGG 58.899 37.037 0.00 0.00 41.98 4.30
286 287 7.650660 AGTGAGGGGTAACTTAGACTAGTAAT 58.349 38.462 0.00 0.00 0.00 1.89
327 328 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
341 342 7.455008 CCTCTATAGTGGGGAGTAACATATGTT 59.545 40.741 23.80 23.80 41.73 2.71
342 343 8.190326 TCTATAGTGGGGAGTAACATATGTTG 57.810 38.462 27.62 8.54 38.90 3.33
356 358 2.798976 ATGTTGGTGTCATGCAACAC 57.201 45.000 15.84 12.37 45.79 3.32
359 361 3.282885 TGTTGGTGTCATGCAACACTTA 58.717 40.909 18.55 7.95 45.79 2.24
448 455 9.979578 CTAGCTATGTTACTCAAATCATCTCTT 57.020 33.333 0.00 0.00 0.00 2.85
469 479 8.192774 TCTCTTTCATTAAATCATTGCCACATC 58.807 33.333 0.00 0.00 0.00 3.06
485 495 3.430895 CCACATCAACAAATTTGCTGAGC 59.569 43.478 24.12 0.00 36.79 4.26
500 510 3.769300 TGCTGAGCTGGACTCTATGTTAA 59.231 43.478 5.83 0.00 46.41 2.01
503 517 5.923684 GCTGAGCTGGACTCTATGTTAATAC 59.076 44.000 0.00 0.00 46.41 1.89
504 518 6.239176 GCTGAGCTGGACTCTATGTTAATACT 60.239 42.308 0.00 0.00 46.41 2.12
505 519 7.043961 TGAGCTGGACTCTATGTTAATACTG 57.956 40.000 0.00 0.00 46.41 2.74
506 520 6.833933 TGAGCTGGACTCTATGTTAATACTGA 59.166 38.462 0.00 0.00 46.41 3.41
508 522 7.721402 AGCTGGACTCTATGTTAATACTGAAG 58.279 38.462 0.00 0.00 0.00 3.02
510 524 7.982354 GCTGGACTCTATGTTAATACTGAAGTT 59.018 37.037 0.00 0.00 0.00 2.66
681 718 8.336801 AGTTTTTCAAGAATACCACAGTATCC 57.663 34.615 0.00 0.00 38.27 2.59
766 966 1.407712 CGGGAATATTGGTCGGTTGGT 60.408 52.381 0.00 0.00 0.00 3.67
874 1076 2.438021 TGCACACATACCTTATCCTCCC 59.562 50.000 0.00 0.00 0.00 4.30
875 1077 2.438021 GCACACATACCTTATCCTCCCA 59.562 50.000 0.00 0.00 0.00 4.37
876 1078 3.744530 GCACACATACCTTATCCTCCCAC 60.745 52.174 0.00 0.00 0.00 4.61
877 1079 3.711704 CACACATACCTTATCCTCCCACT 59.288 47.826 0.00 0.00 0.00 4.00
878 1080 3.967987 ACACATACCTTATCCTCCCACTC 59.032 47.826 0.00 0.00 0.00 3.51
879 1081 3.325135 CACATACCTTATCCTCCCACTCC 59.675 52.174 0.00 0.00 0.00 3.85
880 1082 2.789323 TACCTTATCCTCCCACTCCC 57.211 55.000 0.00 0.00 0.00 4.30
881 1083 0.029989 ACCTTATCCTCCCACTCCCC 60.030 60.000 0.00 0.00 0.00 4.81
882 1084 1.122019 CCTTATCCTCCCACTCCCCG 61.122 65.000 0.00 0.00 0.00 5.73
918 1127 4.009675 TCAACACACCAAAGCATATCCTC 58.990 43.478 0.00 0.00 0.00 3.71
921 1130 1.134098 ACACCAAAGCATATCCTCCGG 60.134 52.381 0.00 0.00 0.00 5.14
971 1185 0.033991 TTGGACCGGAGAGAGAGAGG 60.034 60.000 9.46 0.00 0.00 3.69
1034 1248 1.035139 GCAAGGCTAATCCACCCATG 58.965 55.000 0.00 0.00 37.29 3.66
1060 1274 0.110486 GGTGTCCAAGAGCCCAAGAA 59.890 55.000 0.00 0.00 0.00 2.52
1077 1291 4.643387 ACGCCACCAGCACCCTTC 62.643 66.667 0.00 0.00 44.04 3.46
1090 1304 1.538876 CCCTTCCTCCTCCACACCA 60.539 63.158 0.00 0.00 0.00 4.17
1098 1312 0.251916 TCCTCCACACCAATAAGCCG 59.748 55.000 0.00 0.00 0.00 5.52
1115 1329 2.740055 GCTGACCACCGCACTGAG 60.740 66.667 0.00 0.00 0.00 3.35
1621 1838 2.092968 TCCGGCTACTTCTTGCAATGAT 60.093 45.455 0.00 0.00 0.00 2.45
1635 1852 2.061773 CAATGATTACCGAGCTAGGCG 58.938 52.381 13.48 0.00 33.69 5.52
1636 1853 0.038159 ATGATTACCGAGCTAGGCGC 60.038 55.000 13.48 0.00 39.57 6.53
1690 1911 7.004555 TGCAATTAGTGAAGAGGAGAAACTA 57.995 36.000 0.00 0.00 0.00 2.24
1807 2028 3.307059 GCGATGTATAGCAGAGGGGAAAT 60.307 47.826 0.00 0.00 0.00 2.17
1858 2079 7.801547 ATAATTTTCTTGTGAATGCAGTTCG 57.198 32.000 0.00 0.00 39.80 3.95
1870 2091 1.052287 GCAGTTCGCGGACAAATTTG 58.948 50.000 21.79 16.67 0.00 2.32
1897 2118 1.739067 ATTGCTTCGAGTGGTTAGGC 58.261 50.000 0.00 0.00 0.00 3.93
1919 2140 2.949705 GAATCCCCTCTCGCAAGGCC 62.950 65.000 0.00 0.00 34.88 5.19
1939 2160 4.142093 GGCCACTGTTGAATATTTGAGCAT 60.142 41.667 0.00 0.00 0.00 3.79
2011 2232 9.941664 AATCAAAACACAGATGATAATCGAATC 57.058 29.630 0.00 0.00 33.60 2.52
2012 2233 8.491331 TCAAAACACAGATGATAATCGAATCA 57.509 30.769 2.39 2.39 40.07 2.57
2013 2234 8.945057 TCAAAACACAGATGATAATCGAATCAA 58.055 29.630 3.99 0.00 39.25 2.57
2014 2235 9.218359 CAAAACACAGATGATAATCGAATCAAG 57.782 33.333 3.99 1.26 39.25 3.02
2015 2236 8.722480 AAACACAGATGATAATCGAATCAAGA 57.278 30.769 3.99 0.00 39.25 3.02
2016 2237 8.722480 AACACAGATGATAATCGAATCAAGAA 57.278 30.769 3.99 0.00 39.25 2.52
2017 2238 8.722480 ACACAGATGATAATCGAATCAAGAAA 57.278 30.769 3.99 0.00 39.25 2.52
2018 2239 8.607459 ACACAGATGATAATCGAATCAAGAAAC 58.393 33.333 3.99 0.00 39.25 2.78
2019 2240 8.606602 CACAGATGATAATCGAATCAAGAAACA 58.393 33.333 3.99 0.00 39.25 2.83
2020 2241 8.824781 ACAGATGATAATCGAATCAAGAAACAG 58.175 33.333 3.99 0.00 39.25 3.16
2021 2242 9.038803 CAGATGATAATCGAATCAAGAAACAGA 57.961 33.333 3.99 0.00 39.25 3.41
2022 2243 9.775854 AGATGATAATCGAATCAAGAAACAGAT 57.224 29.630 3.99 0.00 39.25 2.90
2025 2246 9.382275 TGATAATCGAATCAAGAAACAGATTCA 57.618 29.630 13.55 3.90 46.52 2.57
2028 2249 6.426980 TCGAATCAAGAAACAGATTCATGG 57.573 37.500 13.55 0.90 46.52 3.66
2029 2250 6.172630 TCGAATCAAGAAACAGATTCATGGA 58.827 36.000 13.55 0.00 46.52 3.41
2030 2251 6.654582 TCGAATCAAGAAACAGATTCATGGAA 59.345 34.615 13.55 0.00 46.52 3.53
2031 2252 6.744537 CGAATCAAGAAACAGATTCATGGAAC 59.255 38.462 13.55 0.00 46.52 3.62
2032 2253 7.361542 CGAATCAAGAAACAGATTCATGGAACT 60.362 37.037 13.55 0.00 46.52 3.01
2033 2254 8.868522 AATCAAGAAACAGATTCATGGAACTA 57.131 30.769 0.00 0.00 40.72 2.24
2034 2255 7.912056 TCAAGAAACAGATTCATGGAACTAG 57.088 36.000 0.00 0.00 40.72 2.57
2035 2256 7.453393 TCAAGAAACAGATTCATGGAACTAGT 58.547 34.615 0.00 0.00 40.72 2.57
2036 2257 7.604164 TCAAGAAACAGATTCATGGAACTAGTC 59.396 37.037 0.00 0.00 40.72 2.59
2037 2258 7.251321 AGAAACAGATTCATGGAACTAGTCT 57.749 36.000 0.00 0.00 40.72 3.24
2038 2259 7.684529 AGAAACAGATTCATGGAACTAGTCTT 58.315 34.615 0.00 0.00 40.72 3.01
2039 2260 7.605691 AGAAACAGATTCATGGAACTAGTCTTG 59.394 37.037 0.00 0.00 40.72 3.02
2040 2261 5.181748 ACAGATTCATGGAACTAGTCTTGC 58.818 41.667 0.00 0.00 0.00 4.01
2041 2262 5.181009 CAGATTCATGGAACTAGTCTTGCA 58.819 41.667 0.00 0.00 0.00 4.08
2042 2263 5.645067 CAGATTCATGGAACTAGTCTTGCAA 59.355 40.000 0.00 0.00 0.00 4.08
2043 2264 6.318144 CAGATTCATGGAACTAGTCTTGCAAT 59.682 38.462 0.00 0.00 0.00 3.56
2044 2265 6.541641 AGATTCATGGAACTAGTCTTGCAATC 59.458 38.462 0.00 1.05 0.00 2.67
2045 2266 4.183865 TCATGGAACTAGTCTTGCAATCG 58.816 43.478 0.00 0.00 0.00 3.34
2046 2267 3.953712 TGGAACTAGTCTTGCAATCGA 57.046 42.857 0.00 0.00 0.00 3.59
2047 2268 4.265904 TGGAACTAGTCTTGCAATCGAA 57.734 40.909 0.00 0.00 0.00 3.71
2048 2269 4.637276 TGGAACTAGTCTTGCAATCGAAA 58.363 39.130 0.00 0.00 0.00 3.46
2049 2270 5.060506 TGGAACTAGTCTTGCAATCGAAAA 58.939 37.500 0.00 0.00 0.00 2.29
2050 2271 5.049680 TGGAACTAGTCTTGCAATCGAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
2051 2272 5.358298 AACTAGTCTTGCAATCGAAAACC 57.642 39.130 0.00 0.00 0.00 3.27
2052 2273 4.385825 ACTAGTCTTGCAATCGAAAACCA 58.614 39.130 0.00 0.00 0.00 3.67
2053 2274 4.819630 ACTAGTCTTGCAATCGAAAACCAA 59.180 37.500 0.00 0.00 0.00 3.67
2054 2275 4.647424 AGTCTTGCAATCGAAAACCAAA 57.353 36.364 0.00 0.00 0.00 3.28
2055 2276 5.004922 AGTCTTGCAATCGAAAACCAAAA 57.995 34.783 0.00 0.00 0.00 2.44
2056 2277 5.043248 AGTCTTGCAATCGAAAACCAAAAG 58.957 37.500 0.00 0.00 0.00 2.27
2057 2278 5.040635 GTCTTGCAATCGAAAACCAAAAGA 58.959 37.500 0.00 0.00 0.00 2.52
2058 2279 5.518487 GTCTTGCAATCGAAAACCAAAAGAA 59.482 36.000 0.00 0.00 0.00 2.52
2059 2280 6.200854 GTCTTGCAATCGAAAACCAAAAGAAT 59.799 34.615 0.00 0.00 0.00 2.40
2060 2281 7.381139 GTCTTGCAATCGAAAACCAAAAGAATA 59.619 33.333 0.00 0.00 0.00 1.75
2061 2282 7.923344 TCTTGCAATCGAAAACCAAAAGAATAA 59.077 29.630 0.00 0.00 0.00 1.40
2062 2283 8.425577 TTGCAATCGAAAACCAAAAGAATAAA 57.574 26.923 0.00 0.00 0.00 1.40
2063 2284 8.600449 TGCAATCGAAAACCAAAAGAATAAAT 57.400 26.923 0.00 0.00 0.00 1.40
2064 2285 9.698309 TGCAATCGAAAACCAAAAGAATAAATA 57.302 25.926 0.00 0.00 0.00 1.40
2085 2306 7.783090 AATATCATATCCACATCGATTCTGC 57.217 36.000 0.00 0.00 0.00 4.26
2086 2307 4.879197 TCATATCCACATCGATTCTGCT 57.121 40.909 0.00 0.00 0.00 4.24
2087 2308 5.982890 TCATATCCACATCGATTCTGCTA 57.017 39.130 0.00 0.00 0.00 3.49
2088 2309 5.958955 TCATATCCACATCGATTCTGCTAG 58.041 41.667 0.00 0.00 0.00 3.42
2089 2310 5.478332 TCATATCCACATCGATTCTGCTAGT 59.522 40.000 0.00 0.00 0.00 2.57
2090 2311 6.659242 TCATATCCACATCGATTCTGCTAGTA 59.341 38.462 0.00 0.00 0.00 1.82
2091 2312 5.791336 ATCCACATCGATTCTGCTAGTAA 57.209 39.130 0.00 0.00 0.00 2.24
2092 2313 5.592104 TCCACATCGATTCTGCTAGTAAA 57.408 39.130 0.00 0.00 0.00 2.01
2093 2314 5.972935 TCCACATCGATTCTGCTAGTAAAA 58.027 37.500 0.00 0.00 0.00 1.52
2094 2315 6.403049 TCCACATCGATTCTGCTAGTAAAAA 58.597 36.000 0.00 0.00 0.00 1.94
2095 2316 6.535150 TCCACATCGATTCTGCTAGTAAAAAG 59.465 38.462 0.00 0.00 0.00 2.27
2096 2317 6.188175 CACATCGATTCTGCTAGTAAAAAGC 58.812 40.000 0.00 0.00 40.50 3.51
2106 2327 6.963083 TGCTAGTAAAAAGCAAACCCTAAA 57.037 33.333 0.00 0.00 46.57 1.85
2107 2328 7.349412 TGCTAGTAAAAAGCAAACCCTAAAA 57.651 32.000 0.00 0.00 46.57 1.52
2108 2329 7.204604 TGCTAGTAAAAAGCAAACCCTAAAAC 58.795 34.615 0.00 0.00 46.57 2.43
2109 2330 7.147880 TGCTAGTAAAAAGCAAACCCTAAAACA 60.148 33.333 0.00 0.00 46.57 2.83
2110 2331 7.707464 GCTAGTAAAAAGCAAACCCTAAAACAA 59.293 33.333 0.00 0.00 39.83 2.83
2111 2332 9.589111 CTAGTAAAAAGCAAACCCTAAAACAAA 57.411 29.630 0.00 0.00 0.00 2.83
2112 2333 8.259049 AGTAAAAAGCAAACCCTAAAACAAAC 57.741 30.769 0.00 0.00 0.00 2.93
2113 2334 5.788055 AAAAGCAAACCCTAAAACAAACG 57.212 34.783 0.00 0.00 0.00 3.60
2114 2335 3.446310 AGCAAACCCTAAAACAAACGG 57.554 42.857 0.00 0.00 0.00 4.44
2115 2336 3.025262 AGCAAACCCTAAAACAAACGGA 58.975 40.909 0.00 0.00 0.00 4.69
2116 2337 3.639561 AGCAAACCCTAAAACAAACGGAT 59.360 39.130 0.00 0.00 0.00 4.18
2117 2338 4.828387 AGCAAACCCTAAAACAAACGGATA 59.172 37.500 0.00 0.00 0.00 2.59
2118 2339 5.302313 AGCAAACCCTAAAACAAACGGATAA 59.698 36.000 0.00 0.00 0.00 1.75
2119 2340 5.984323 GCAAACCCTAAAACAAACGGATAAA 59.016 36.000 0.00 0.00 0.00 1.40
2120 2341 6.479331 GCAAACCCTAAAACAAACGGATAAAA 59.521 34.615 0.00 0.00 0.00 1.52
2121 2342 7.011202 GCAAACCCTAAAACAAACGGATAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
2140 2361 3.567478 AAAGCATACAGATCAGGTCCC 57.433 47.619 0.00 0.00 0.00 4.46
2141 2362 1.428869 AGCATACAGATCAGGTCCCC 58.571 55.000 0.00 0.00 0.00 4.81
2142 2363 0.034059 GCATACAGATCAGGTCCCCG 59.966 60.000 0.00 0.00 0.00 5.73
2143 2364 0.034059 CATACAGATCAGGTCCCCGC 59.966 60.000 0.00 0.00 0.00 6.13
2144 2365 1.464376 ATACAGATCAGGTCCCCGCG 61.464 60.000 0.00 0.00 0.00 6.46
2145 2366 2.849096 TACAGATCAGGTCCCCGCGT 62.849 60.000 4.92 0.00 0.00 6.01
2146 2367 3.148279 AGATCAGGTCCCCGCGTC 61.148 66.667 4.92 0.00 0.00 5.19
2147 2368 4.570663 GATCAGGTCCCCGCGTCG 62.571 72.222 4.92 0.00 0.00 5.12
2175 2396 4.593864 GGGCGACTCCGATGGCTC 62.594 72.222 0.00 0.00 38.22 4.70
2176 2397 3.532155 GGCGACTCCGATGGCTCT 61.532 66.667 0.00 0.00 38.22 4.09
2177 2398 2.496817 GCGACTCCGATGGCTCTT 59.503 61.111 0.00 0.00 38.22 2.85
2178 2399 1.590259 GCGACTCCGATGGCTCTTC 60.590 63.158 0.00 0.00 38.22 2.87
2179 2400 1.809869 CGACTCCGATGGCTCTTCA 59.190 57.895 0.00 0.00 38.22 3.02
2180 2401 0.173481 CGACTCCGATGGCTCTTCAA 59.827 55.000 0.00 0.00 38.22 2.69
2181 2402 1.646189 GACTCCGATGGCTCTTCAAC 58.354 55.000 0.00 0.00 0.00 3.18
2182 2403 0.250513 ACTCCGATGGCTCTTCAACC 59.749 55.000 0.00 0.00 0.00 3.77
2183 2404 0.462759 CTCCGATGGCTCTTCAACCC 60.463 60.000 0.00 0.00 0.00 4.11
2184 2405 0.909610 TCCGATGGCTCTTCAACCCT 60.910 55.000 0.00 0.00 0.00 4.34
2185 2406 0.830648 CCGATGGCTCTTCAACCCTA 59.169 55.000 0.00 0.00 0.00 3.53
2186 2407 1.202580 CCGATGGCTCTTCAACCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
2187 2408 1.808133 CGATGGCTCTTCAACCCTAGC 60.808 57.143 0.00 0.00 0.00 3.42
2189 2410 1.153349 GGCTCTTCAACCCTAGCCG 60.153 63.158 0.00 0.00 44.63 5.52
2190 2411 1.815840 GCTCTTCAACCCTAGCCGC 60.816 63.158 0.00 0.00 0.00 6.53
2191 2412 1.153349 CTCTTCAACCCTAGCCGCC 60.153 63.158 0.00 0.00 0.00 6.13
2192 2413 2.511600 CTTCAACCCTAGCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
2193 2414 4.770874 TTCAACCCTAGCCGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
2215 2436 3.715871 GGCCTAGCCCATCTTTCTC 57.284 57.895 0.00 0.00 44.06 2.87
2216 2437 0.109532 GGCCTAGCCCATCTTTCTCC 59.890 60.000 0.00 0.00 44.06 3.71
2217 2438 0.109532 GCCTAGCCCATCTTTCTCCC 59.890 60.000 0.00 0.00 0.00 4.30
2218 2439 0.767998 CCTAGCCCATCTTTCTCCCC 59.232 60.000 0.00 0.00 0.00 4.81
2219 2440 1.697291 CCTAGCCCATCTTTCTCCCCT 60.697 57.143 0.00 0.00 0.00 4.79
2220 2441 1.696884 CTAGCCCATCTTTCTCCCCTC 59.303 57.143 0.00 0.00 0.00 4.30
2221 2442 0.990818 AGCCCATCTTTCTCCCCTCC 60.991 60.000 0.00 0.00 0.00 4.30
2222 2443 0.990818 GCCCATCTTTCTCCCCTCCT 60.991 60.000 0.00 0.00 0.00 3.69
2223 2444 1.135960 CCCATCTTTCTCCCCTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
2224 2445 1.135960 CCATCTTTCTCCCCTCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
2225 2446 1.135960 CATCTTTCTCCCCTCCTCCC 58.864 60.000 0.00 0.00 0.00 4.30
2226 2447 0.399233 ATCTTTCTCCCCTCCTCCCG 60.399 60.000 0.00 0.00 0.00 5.14
2227 2448 2.687566 TTTCTCCCCTCCTCCCGC 60.688 66.667 0.00 0.00 0.00 6.13
2228 2449 4.798682 TTCTCCCCTCCTCCCGCC 62.799 72.222 0.00 0.00 0.00 6.13
2306 2527 4.148825 CCCCCTTCCGCGTCTCAG 62.149 72.222 4.92 0.00 0.00 3.35
2307 2528 4.148825 CCCCTTCCGCGTCTCAGG 62.149 72.222 4.92 4.18 0.00 3.86
2308 2529 4.148825 CCCTTCCGCGTCTCAGGG 62.149 72.222 13.03 13.03 40.30 4.45
2309 2530 4.148825 CCTTCCGCGTCTCAGGGG 62.149 72.222 4.92 0.00 44.59 4.79
2310 2531 3.382832 CTTCCGCGTCTCAGGGGT 61.383 66.667 4.92 0.00 43.76 4.95
2311 2532 3.649277 CTTCCGCGTCTCAGGGGTG 62.649 68.421 4.92 0.00 43.76 4.61
2334 2555 3.443045 GCCCCAACATGCGTGGAG 61.443 66.667 15.96 5.50 0.00 3.86
2335 2556 2.751436 CCCCAACATGCGTGGAGG 60.751 66.667 15.96 11.12 0.00 4.30
2336 2557 2.034066 CCCAACATGCGTGGAGGT 59.966 61.111 15.96 0.00 0.00 3.85
2337 2558 2.334946 CCCAACATGCGTGGAGGTG 61.335 63.158 15.96 2.78 0.00 4.00
2338 2559 2.562912 CAACATGCGTGGAGGTGC 59.437 61.111 11.36 0.00 0.00 5.01
2339 2560 3.049674 AACATGCGTGGAGGTGCG 61.050 61.111 11.36 0.00 0.00 5.34
2340 2561 3.529341 AACATGCGTGGAGGTGCGA 62.529 57.895 11.36 0.00 0.00 5.10
2341 2562 3.490759 CATGCGTGGAGGTGCGAC 61.491 66.667 0.00 0.00 0.00 5.19
2342 2563 4.760047 ATGCGTGGAGGTGCGACC 62.760 66.667 0.00 0.00 38.99 4.79
2345 2566 4.129737 CGTGGAGGTGCGACCGAT 62.130 66.667 0.00 0.00 44.90 4.18
2346 2567 2.202756 GTGGAGGTGCGACCGATC 60.203 66.667 0.00 0.00 44.90 3.69
2347 2568 2.362503 TGGAGGTGCGACCGATCT 60.363 61.111 0.00 0.00 44.90 2.75
2348 2569 1.077285 TGGAGGTGCGACCGATCTA 60.077 57.895 0.00 0.00 44.90 1.98
2349 2570 1.101635 TGGAGGTGCGACCGATCTAG 61.102 60.000 0.00 0.00 44.90 2.43
2350 2571 0.818445 GGAGGTGCGACCGATCTAGA 60.818 60.000 0.00 0.00 44.90 2.43
2351 2572 1.022735 GAGGTGCGACCGATCTAGAA 58.977 55.000 0.00 0.00 44.90 2.10
2352 2573 1.002251 GAGGTGCGACCGATCTAGAAG 60.002 57.143 0.00 0.00 44.90 2.85
2353 2574 0.595310 GGTGCGACCGATCTAGAAGC 60.595 60.000 0.00 0.00 0.00 3.86
2354 2575 0.930742 GTGCGACCGATCTAGAAGCG 60.931 60.000 10.43 10.43 0.00 4.68
2355 2576 1.093496 TGCGACCGATCTAGAAGCGA 61.093 55.000 16.98 0.00 0.00 4.93
2356 2577 0.657951 GCGACCGATCTAGAAGCGAC 60.658 60.000 16.98 10.75 0.00 5.19
2357 2578 0.656259 CGACCGATCTAGAAGCGACA 59.344 55.000 16.98 0.00 0.00 4.35
2358 2579 1.333347 CGACCGATCTAGAAGCGACAG 60.333 57.143 16.98 5.97 0.00 3.51
2359 2580 0.382515 ACCGATCTAGAAGCGACAGC 59.617 55.000 16.98 0.00 45.58 4.40
2369 2590 2.395690 GCGACAGCGTTGGATTCG 59.604 61.111 3.74 5.31 40.36 3.34
2370 2591 2.092291 GCGACAGCGTTGGATTCGA 61.092 57.895 13.50 0.00 40.36 3.71
2371 2592 1.702299 CGACAGCGTTGGATTCGAC 59.298 57.895 3.74 0.00 0.00 4.20
2376 2597 3.550992 CGTTGGATTCGACGGCGG 61.551 66.667 12.58 0.00 44.68 6.13
2377 2598 3.861263 GTTGGATTCGACGGCGGC 61.861 66.667 12.58 7.52 38.28 6.53
2434 2655 4.864334 GTGGCGGGCCTGGATCAG 62.864 72.222 15.02 0.00 36.94 2.90
2467 2688 3.195698 GGTCTTCGGCGGCATGTC 61.196 66.667 10.53 0.00 0.00 3.06
2468 2689 2.434185 GTCTTCGGCGGCATGTCA 60.434 61.111 10.53 0.00 0.00 3.58
2469 2690 2.032634 GTCTTCGGCGGCATGTCAA 61.033 57.895 10.53 0.00 0.00 3.18
2470 2691 1.078497 TCTTCGGCGGCATGTCAAT 60.078 52.632 10.53 0.00 0.00 2.57
2471 2692 0.676466 TCTTCGGCGGCATGTCAATT 60.676 50.000 10.53 0.00 0.00 2.32
2472 2693 0.523968 CTTCGGCGGCATGTCAATTG 60.524 55.000 10.53 0.00 0.00 2.32
2473 2694 1.932011 TTCGGCGGCATGTCAATTGG 61.932 55.000 10.53 0.00 0.00 3.16
2474 2695 2.202783 GGCGGCATGTCAATTGGC 60.203 61.111 3.07 2.20 36.38 4.52
2475 2696 2.713967 GGCGGCATGTCAATTGGCT 61.714 57.895 12.01 0.00 37.50 4.75
2476 2697 1.216178 GCGGCATGTCAATTGGCTT 59.784 52.632 12.01 1.54 37.50 4.35
2477 2698 0.390209 GCGGCATGTCAATTGGCTTT 60.390 50.000 12.01 0.00 37.50 3.51
2478 2699 1.135141 GCGGCATGTCAATTGGCTTTA 60.135 47.619 12.01 0.00 37.50 1.85
2479 2700 2.801063 CGGCATGTCAATTGGCTTTAG 58.199 47.619 12.01 0.00 37.50 1.85
2480 2701 2.423185 CGGCATGTCAATTGGCTTTAGA 59.577 45.455 12.01 0.00 37.50 2.10
2481 2702 3.067180 CGGCATGTCAATTGGCTTTAGAT 59.933 43.478 12.01 0.00 37.50 1.98
2482 2703 4.614946 GGCATGTCAATTGGCTTTAGATC 58.385 43.478 12.01 0.00 36.76 2.75
2483 2704 4.285292 GCATGTCAATTGGCTTTAGATCG 58.715 43.478 12.01 0.00 0.00 3.69
2484 2705 4.790766 GCATGTCAATTGGCTTTAGATCGG 60.791 45.833 12.01 0.00 0.00 4.18
2485 2706 2.682856 TGTCAATTGGCTTTAGATCGGC 59.317 45.455 12.01 0.00 0.00 5.54
2486 2707 1.939934 TCAATTGGCTTTAGATCGGCG 59.060 47.619 5.42 0.00 0.00 6.46
2487 2708 1.002468 CAATTGGCTTTAGATCGGCGG 60.002 52.381 7.21 0.00 0.00 6.13
2488 2709 1.166531 ATTGGCTTTAGATCGGCGGC 61.167 55.000 7.21 0.00 0.00 6.53
2489 2710 3.338676 GGCTTTAGATCGGCGGCG 61.339 66.667 27.15 27.15 0.00 6.46
2490 2711 3.338676 GCTTTAGATCGGCGGCGG 61.339 66.667 31.73 14.27 0.00 6.13
2491 2712 3.338676 CTTTAGATCGGCGGCGGC 61.339 66.667 31.73 24.75 38.90 6.53
2509 2730 4.083862 GTCGAGGGCCTGGTGGAC 62.084 72.222 12.95 9.38 41.93 4.02
2510 2731 4.316823 TCGAGGGCCTGGTGGACT 62.317 66.667 12.95 0.00 42.43 3.85
2511 2732 4.087892 CGAGGGCCTGGTGGACTG 62.088 72.222 12.95 0.00 42.43 3.51
2512 2733 4.416738 GAGGGCCTGGTGGACTGC 62.417 72.222 12.95 0.00 42.43 4.40
2513 2734 4.990910 AGGGCCTGGTGGACTGCT 62.991 66.667 4.50 0.00 42.43 4.24
2514 2735 3.971702 GGGCCTGGTGGACTGCTT 61.972 66.667 0.84 0.00 42.43 3.91
2515 2736 2.674380 GGCCTGGTGGACTGCTTG 60.674 66.667 0.00 0.00 38.69 4.01
2516 2737 2.674380 GCCTGGTGGACTGCTTGG 60.674 66.667 0.00 0.00 34.57 3.61
2517 2738 2.674380 CCTGGTGGACTGCTTGGC 60.674 66.667 0.00 0.00 34.57 4.52
2518 2739 3.052082 CTGGTGGACTGCTTGGCG 61.052 66.667 0.00 0.00 0.00 5.69
2519 2740 4.641645 TGGTGGACTGCTTGGCGG 62.642 66.667 0.00 0.00 41.29 6.13
2536 2757 3.837578 GCACCCATGGCAGATCTG 58.162 61.111 18.84 18.84 0.00 2.90
2537 2758 1.077212 GCACCCATGGCAGATCTGT 60.077 57.895 23.38 1.24 0.00 3.41
2538 2759 0.682209 GCACCCATGGCAGATCTGTT 60.682 55.000 23.38 6.84 0.00 3.16
2539 2760 1.386533 CACCCATGGCAGATCTGTTC 58.613 55.000 23.38 16.03 0.00 3.18
2540 2761 1.064906 CACCCATGGCAGATCTGTTCT 60.065 52.381 23.38 5.96 33.90 3.01
2546 2767 4.528674 CAGATCTGTTCTGGCCGG 57.471 61.111 14.95 4.71 46.89 6.13
2547 2768 1.599047 CAGATCTGTTCTGGCCGGT 59.401 57.895 14.95 0.00 46.89 5.28
2548 2769 0.742281 CAGATCTGTTCTGGCCGGTG 60.742 60.000 14.95 0.00 46.89 4.94
2549 2770 1.194781 AGATCTGTTCTGGCCGGTGT 61.195 55.000 12.43 0.00 31.79 4.16
2550 2771 0.535335 GATCTGTTCTGGCCGGTGTA 59.465 55.000 12.43 0.00 0.00 2.90
2551 2772 0.537188 ATCTGTTCTGGCCGGTGTAG 59.463 55.000 12.43 8.31 0.00 2.74
2552 2773 1.741770 CTGTTCTGGCCGGTGTAGC 60.742 63.158 12.43 0.00 0.00 3.58
2559 2780 3.295800 GCCGGTGTAGCCAGTAGT 58.704 61.111 1.90 0.00 36.97 2.73
2560 2781 1.153628 GCCGGTGTAGCCAGTAGTG 60.154 63.158 1.90 0.00 36.97 2.74
2562 2783 1.255667 CCGGTGTAGCCAGTAGTGGT 61.256 60.000 18.02 7.56 46.96 4.16
2563 2784 0.108804 CGGTGTAGCCAGTAGTGGTG 60.109 60.000 18.02 0.00 46.96 4.17
2564 2785 0.249398 GGTGTAGCCAGTAGTGGTGG 59.751 60.000 18.02 0.00 46.96 4.61
2569 2790 4.963878 CCAGTAGTGGTGGCCATC 57.036 61.111 9.72 9.78 39.30 3.51
2570 2791 2.300996 CCAGTAGTGGTGGCCATCT 58.699 57.895 18.94 14.56 39.30 2.90
2571 2792 0.620556 CCAGTAGTGGTGGCCATCTT 59.379 55.000 18.94 8.22 39.30 2.40
2572 2793 1.407437 CCAGTAGTGGTGGCCATCTTC 60.407 57.143 18.94 10.53 39.30 2.87
2573 2794 1.556911 CAGTAGTGGTGGCCATCTTCT 59.443 52.381 18.94 17.21 35.28 2.85
2574 2795 2.026822 CAGTAGTGGTGGCCATCTTCTT 60.027 50.000 18.94 2.46 35.28 2.52
2575 2796 2.237392 AGTAGTGGTGGCCATCTTCTTC 59.763 50.000 18.94 12.93 35.28 2.87
2576 2797 0.036010 AGTGGTGGCCATCTTCTTCG 60.036 55.000 18.94 0.00 35.28 3.79
2577 2798 0.321653 GTGGTGGCCATCTTCTTCGT 60.322 55.000 18.94 0.00 35.28 3.85
2578 2799 0.036388 TGGTGGCCATCTTCTTCGTC 60.036 55.000 18.94 0.00 0.00 4.20
2579 2800 1.084370 GGTGGCCATCTTCTTCGTCG 61.084 60.000 9.72 0.00 0.00 5.12
2580 2801 1.084370 GTGGCCATCTTCTTCGTCGG 61.084 60.000 9.72 0.00 0.00 4.79
2581 2802 2.174319 GGCCATCTTCTTCGTCGGC 61.174 63.158 0.00 0.00 38.85 5.54
2582 2803 2.517450 GCCATCTTCTTCGTCGGCG 61.517 63.158 1.15 1.15 39.92 6.46
2583 2804 1.878522 CCATCTTCTTCGTCGGCGG 60.879 63.158 10.62 0.00 38.89 6.13
2584 2805 1.153823 CATCTTCTTCGTCGGCGGT 60.154 57.895 10.62 0.00 38.89 5.68
2585 2806 1.153823 ATCTTCTTCGTCGGCGGTG 60.154 57.895 10.62 2.42 38.89 4.94
2586 2807 2.558554 ATCTTCTTCGTCGGCGGTGG 62.559 60.000 10.62 0.00 38.89 4.61
2604 2825 3.058160 CCGGCCAGAAGCTTGGTG 61.058 66.667 2.10 0.28 43.05 4.17
2605 2826 2.032528 CGGCCAGAAGCTTGGTGA 59.967 61.111 2.10 0.00 43.05 4.02
2606 2827 1.377725 CGGCCAGAAGCTTGGTGAT 60.378 57.895 2.10 0.00 43.05 3.06
2607 2828 0.962356 CGGCCAGAAGCTTGGTGATT 60.962 55.000 2.10 0.00 43.05 2.57
2608 2829 0.529378 GGCCAGAAGCTTGGTGATTG 59.471 55.000 2.10 0.00 43.05 2.67
2609 2830 0.529378 GCCAGAAGCTTGGTGATTGG 59.471 55.000 2.10 3.13 40.49 3.16
2610 2831 1.887956 GCCAGAAGCTTGGTGATTGGA 60.888 52.381 2.10 0.00 40.49 3.53
2611 2832 2.731572 CCAGAAGCTTGGTGATTGGAT 58.268 47.619 2.10 0.00 33.38 3.41
2612 2833 3.094572 CCAGAAGCTTGGTGATTGGATT 58.905 45.455 2.10 0.00 33.38 3.01
2613 2834 3.512724 CCAGAAGCTTGGTGATTGGATTT 59.487 43.478 2.10 0.00 33.38 2.17
2614 2835 4.381292 CCAGAAGCTTGGTGATTGGATTTC 60.381 45.833 2.10 0.00 33.38 2.17
2615 2836 3.441572 AGAAGCTTGGTGATTGGATTTCG 59.558 43.478 2.10 0.00 0.00 3.46
2616 2837 3.071874 AGCTTGGTGATTGGATTTCGA 57.928 42.857 0.00 0.00 0.00 3.71
2617 2838 3.012518 AGCTTGGTGATTGGATTTCGAG 58.987 45.455 0.00 0.00 0.00 4.04
2618 2839 3.009723 GCTTGGTGATTGGATTTCGAGA 58.990 45.455 0.00 0.00 0.00 4.04
2619 2840 3.629398 GCTTGGTGATTGGATTTCGAGAT 59.371 43.478 0.00 0.00 0.00 2.75
2620 2841 4.260948 GCTTGGTGATTGGATTTCGAGATC 60.261 45.833 7.40 7.40 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.391312 AAACCTAATGTTGACTTCCATGC 57.609 39.130 0.00 0.00 37.23 4.06
22 23 5.838521 ACCAAAACCTAATGTTGACTTCCAT 59.161 36.000 0.00 0.00 37.23 3.41
24 25 5.784578 ACCAAAACCTAATGTTGACTTCC 57.215 39.130 0.00 0.00 37.23 3.46
134 135 7.569599 AGGTGTATATACCCCTAAGAATTGG 57.430 40.000 14.59 0.00 41.83 3.16
136 137 7.905106 CCCTAGGTGTATATACCCCTAAGAATT 59.095 40.741 20.50 1.58 41.83 2.17
137 138 7.245532 TCCCTAGGTGTATATACCCCTAAGAAT 59.754 40.741 20.50 2.19 41.83 2.40
138 139 6.571575 TCCCTAGGTGTATATACCCCTAAGAA 59.428 42.308 20.50 9.28 41.83 2.52
139 140 6.011274 GTCCCTAGGTGTATATACCCCTAAGA 60.011 46.154 20.50 17.34 41.83 2.10
140 141 6.193504 GTCCCTAGGTGTATATACCCCTAAG 58.806 48.000 20.50 15.86 41.83 2.18
141 142 5.016675 GGTCCCTAGGTGTATATACCCCTAA 59.983 48.000 20.50 7.60 41.83 2.69
142 143 4.545786 GGTCCCTAGGTGTATATACCCCTA 59.454 50.000 19.40 19.40 41.83 3.53
143 144 3.339130 GGTCCCTAGGTGTATATACCCCT 59.661 52.174 19.25 19.25 41.83 4.79
144 145 3.078000 TGGTCCCTAGGTGTATATACCCC 59.922 52.174 14.56 8.32 41.83 4.95
145 146 4.408904 TGGTCCCTAGGTGTATATACCC 57.591 50.000 14.56 10.59 41.83 3.69
146 147 5.603813 TGTTTGGTCCCTAGGTGTATATACC 59.396 44.000 10.56 10.56 41.17 2.73
147 148 6.736110 TGTTTGGTCCCTAGGTGTATATAC 57.264 41.667 8.29 5.89 0.00 1.47
148 149 6.499350 GGATGTTTGGTCCCTAGGTGTATATA 59.501 42.308 8.29 0.00 0.00 0.86
149 150 5.309806 GGATGTTTGGTCCCTAGGTGTATAT 59.690 44.000 8.29 0.00 0.00 0.86
150 151 4.657039 GGATGTTTGGTCCCTAGGTGTATA 59.343 45.833 8.29 0.00 0.00 1.47
151 152 3.458487 GGATGTTTGGTCCCTAGGTGTAT 59.542 47.826 8.29 0.00 0.00 2.29
152 153 2.841881 GGATGTTTGGTCCCTAGGTGTA 59.158 50.000 8.29 0.00 0.00 2.90
153 154 1.633945 GGATGTTTGGTCCCTAGGTGT 59.366 52.381 8.29 0.00 0.00 4.16
226 227 1.650528 AACTGAGAAGGGGGAGACAG 58.349 55.000 0.00 0.00 0.00 3.51
232 233 4.986783 AGTCTTAAAAACTGAGAAGGGGG 58.013 43.478 0.00 0.00 0.00 5.40
238 239 9.706691 CACTATTGGTAGTCTTAAAAACTGAGA 57.293 33.333 0.00 0.00 39.12 3.27
239 240 9.706691 TCACTATTGGTAGTCTTAAAAACTGAG 57.293 33.333 1.37 0.00 39.12 3.35
240 241 9.706691 CTCACTATTGGTAGTCTTAAAAACTGA 57.293 33.333 1.37 0.00 39.12 3.41
241 242 8.936864 CCTCACTATTGGTAGTCTTAAAAACTG 58.063 37.037 1.37 0.00 39.12 3.16
242 243 8.101419 CCCTCACTATTGGTAGTCTTAAAAACT 58.899 37.037 0.00 0.00 39.12 2.66
243 244 7.336176 CCCCTCACTATTGGTAGTCTTAAAAAC 59.664 40.741 0.00 0.00 39.12 2.43
257 258 6.793505 AGTCTAAGTTACCCCTCACTATTG 57.206 41.667 0.00 0.00 0.00 1.90
258 259 7.650660 ACTAGTCTAAGTTACCCCTCACTATT 58.349 38.462 0.00 0.00 0.00 1.73
326 327 4.839121 TGACACCAACATATGTTACTCCC 58.161 43.478 20.39 10.66 36.32 4.30
327 328 5.220854 GCATGACACCAACATATGTTACTCC 60.221 44.000 20.39 9.73 36.32 3.85
385 387 6.899089 TGGGTAACATCACACATATCAAGAT 58.101 36.000 0.00 0.00 39.74 2.40
387 389 7.933577 ACTATGGGTAACATCACACATATCAAG 59.066 37.037 0.00 0.00 42.44 3.02
391 393 9.100197 TCATACTATGGGTAACATCACACATAT 57.900 33.333 0.00 0.00 42.44 1.78
394 396 6.382859 ACTCATACTATGGGTAACATCACACA 59.617 38.462 0.00 0.00 43.54 3.72
448 455 7.384477 TGTTGATGTGGCAATGATTTAATGAA 58.616 30.769 0.00 0.00 0.00 2.57
463 473 3.430895 GCTCAGCAAATTTGTTGATGTGG 59.569 43.478 30.15 21.61 45.25 4.17
469 479 3.054878 GTCCAGCTCAGCAAATTTGTTG 58.945 45.455 24.35 24.35 40.25 3.33
500 510 6.494146 GCCCATAGTAGGACTAACTTCAGTAT 59.506 42.308 0.00 0.00 33.89 2.12
503 517 4.649674 TGCCCATAGTAGGACTAACTTCAG 59.350 45.833 0.00 0.00 33.89 3.02
504 518 4.616553 TGCCCATAGTAGGACTAACTTCA 58.383 43.478 0.00 0.00 33.89 3.02
505 519 4.650131 ACTGCCCATAGTAGGACTAACTTC 59.350 45.833 0.00 0.00 33.89 3.01
506 520 4.621769 ACTGCCCATAGTAGGACTAACTT 58.378 43.478 0.00 0.00 33.89 2.66
508 522 4.216708 AGACTGCCCATAGTAGGACTAAC 58.783 47.826 0.00 0.00 33.89 2.34
510 524 5.658198 TTAGACTGCCCATAGTAGGACTA 57.342 43.478 0.00 0.00 34.82 2.59
511 525 4.537945 TTAGACTGCCCATAGTAGGACT 57.462 45.455 0.00 0.00 31.33 3.85
512 526 5.609533 TTTTAGACTGCCCATAGTAGGAC 57.390 43.478 0.00 0.00 31.33 3.85
608 645 7.923878 GTGTTTGGCTCTGGTTAAAATTTTAGA 59.076 33.333 10.40 5.96 0.00 2.10
681 718 9.474920 TGCCATGTATTTTCTTAAGTTTTTCAG 57.525 29.630 1.63 0.00 0.00 3.02
702 739 1.494960 AGGGTGTGTTTGTTTGCCAT 58.505 45.000 0.00 0.00 0.00 4.40
766 966 6.769512 AGACTGAAATAAGTTACAAGCTGGA 58.230 36.000 0.00 0.00 0.00 3.86
816 1018 3.066621 GTCACATGCACTTTGGAGAAACA 59.933 43.478 0.00 0.00 0.00 2.83
817 1019 3.632189 GTCACATGCACTTTGGAGAAAC 58.368 45.455 0.00 0.00 0.00 2.78
874 1076 1.002624 TAAGGCAAAGCGGGGAGTG 60.003 57.895 0.00 0.00 0.00 3.51
875 1077 1.299976 CTAAGGCAAAGCGGGGAGT 59.700 57.895 0.00 0.00 0.00 3.85
876 1078 2.115291 GCTAAGGCAAAGCGGGGAG 61.115 63.158 0.00 0.00 38.54 4.30
877 1079 2.045340 GCTAAGGCAAAGCGGGGA 60.045 61.111 0.00 0.00 38.54 4.81
878 1080 2.361104 TGCTAAGGCAAAGCGGGG 60.361 61.111 6.61 0.00 46.36 5.73
971 1185 5.360144 GCTAACCCCTTATTTTCTCTTTCCC 59.640 44.000 0.00 0.00 0.00 3.97
1034 1248 1.589716 GCTCTTGGACACCACCATGC 61.590 60.000 0.00 0.00 39.82 4.06
1060 1274 4.643387 GAAGGGTGCTGGTGGCGT 62.643 66.667 0.00 0.00 45.43 5.68
1077 1291 1.408822 GGCTTATTGGTGTGGAGGAGG 60.409 57.143 0.00 0.00 0.00 4.30
1090 1304 4.637771 GGTGGTCAGCGGCTTATT 57.362 55.556 0.00 0.00 0.00 1.40
1098 1312 2.740055 CTCAGTGCGGTGGTCAGC 60.740 66.667 0.00 0.00 35.44 4.26
1115 1329 1.462541 GCGTGAAGTGAAACGATGAGC 60.463 52.381 0.00 0.00 45.86 4.26
1539 1756 0.461961 GTAGCGTCTTCTGGCCAGAT 59.538 55.000 35.42 21.71 37.29 2.90
1635 1852 2.626743 CTGGAATGGATCAAAGGATGGC 59.373 50.000 0.00 0.00 32.67 4.40
1636 1853 3.117398 TCCTGGAATGGATCAAAGGATGG 60.117 47.826 0.00 0.00 37.46 3.51
1690 1911 1.355112 ACCCGGTAACAGCCTTACTT 58.645 50.000 0.00 0.00 0.00 2.24
1807 2028 2.102252 GCACCTCAAAACAAATGTCCCA 59.898 45.455 0.00 0.00 0.00 4.37
1858 2079 4.965119 ATTCTAGTCCAAATTTGTCCGC 57.035 40.909 16.73 4.33 0.00 5.54
1870 2091 3.190874 CCACTCGAAGCAATTCTAGTCC 58.809 50.000 0.00 0.00 0.00 3.85
1897 2118 0.179062 CTTGCGAGAGGGGATTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
1994 2215 8.722480 TGTTTCTTGATTCGATTATCATCTGT 57.278 30.769 0.76 0.00 34.67 3.41
1995 2216 9.038803 TCTGTTTCTTGATTCGATTATCATCTG 57.961 33.333 0.76 0.00 34.67 2.90
1996 2217 9.775854 ATCTGTTTCTTGATTCGATTATCATCT 57.224 29.630 0.76 0.00 34.67 2.90
1999 2220 9.382275 TGAATCTGTTTCTTGATTCGATTATCA 57.618 29.630 9.99 0.00 46.73 2.15
2002 2223 8.615211 CCATGAATCTGTTTCTTGATTCGATTA 58.385 33.333 13.08 0.00 46.73 1.75
2003 2224 7.337689 TCCATGAATCTGTTTCTTGATTCGATT 59.662 33.333 13.08 0.00 46.73 3.34
2004 2225 6.825213 TCCATGAATCTGTTTCTTGATTCGAT 59.175 34.615 13.08 4.18 46.73 3.59
2005 2226 6.172630 TCCATGAATCTGTTTCTTGATTCGA 58.827 36.000 13.08 0.00 46.73 3.71
2006 2227 6.426980 TCCATGAATCTGTTTCTTGATTCG 57.573 37.500 13.08 0.00 46.73 3.34
2007 2228 7.824672 AGTTCCATGAATCTGTTTCTTGATTC 58.175 34.615 13.08 8.29 45.07 2.52
2008 2229 7.771927 AGTTCCATGAATCTGTTTCTTGATT 57.228 32.000 13.08 0.00 40.30 2.57
2009 2230 8.105829 ACTAGTTCCATGAATCTGTTTCTTGAT 58.894 33.333 13.08 0.00 40.30 2.57
2010 2231 7.453393 ACTAGTTCCATGAATCTGTTTCTTGA 58.547 34.615 13.08 0.76 40.30 3.02
2011 2232 7.605691 AGACTAGTTCCATGAATCTGTTTCTTG 59.394 37.037 0.00 7.15 38.56 3.02
2012 2233 7.684529 AGACTAGTTCCATGAATCTGTTTCTT 58.315 34.615 0.00 0.00 35.23 2.52
2013 2234 7.251321 AGACTAGTTCCATGAATCTGTTTCT 57.749 36.000 0.00 0.00 35.23 2.52
2014 2235 7.625185 GCAAGACTAGTTCCATGAATCTGTTTC 60.625 40.741 0.00 0.00 34.72 2.78
2015 2236 6.150140 GCAAGACTAGTTCCATGAATCTGTTT 59.850 38.462 0.00 0.00 0.00 2.83
2016 2237 5.645497 GCAAGACTAGTTCCATGAATCTGTT 59.355 40.000 0.00 0.00 0.00 3.16
2017 2238 5.181748 GCAAGACTAGTTCCATGAATCTGT 58.818 41.667 0.00 0.00 0.00 3.41
2018 2239 5.181009 TGCAAGACTAGTTCCATGAATCTG 58.819 41.667 0.00 0.00 0.00 2.90
2019 2240 5.426689 TGCAAGACTAGTTCCATGAATCT 57.573 39.130 0.00 0.00 0.00 2.40
2020 2241 6.510799 CGATTGCAAGACTAGTTCCATGAATC 60.511 42.308 4.94 1.28 0.00 2.52
2021 2242 5.295292 CGATTGCAAGACTAGTTCCATGAAT 59.705 40.000 4.94 0.00 0.00 2.57
2022 2243 4.631377 CGATTGCAAGACTAGTTCCATGAA 59.369 41.667 4.94 0.00 0.00 2.57
2023 2244 4.081697 TCGATTGCAAGACTAGTTCCATGA 60.082 41.667 4.94 0.00 0.00 3.07
2024 2245 4.183865 TCGATTGCAAGACTAGTTCCATG 58.816 43.478 4.94 0.00 0.00 3.66
2025 2246 4.471904 TCGATTGCAAGACTAGTTCCAT 57.528 40.909 4.94 0.00 0.00 3.41
2026 2247 3.953712 TCGATTGCAAGACTAGTTCCA 57.046 42.857 4.94 0.00 0.00 3.53
2027 2248 5.383130 GTTTTCGATTGCAAGACTAGTTCC 58.617 41.667 4.94 0.00 0.00 3.62
2028 2249 5.049680 TGGTTTTCGATTGCAAGACTAGTTC 60.050 40.000 4.94 0.00 0.00 3.01
2029 2250 4.819630 TGGTTTTCGATTGCAAGACTAGTT 59.180 37.500 4.94 0.00 0.00 2.24
2030 2251 4.385825 TGGTTTTCGATTGCAAGACTAGT 58.614 39.130 4.94 0.00 0.00 2.57
2031 2252 5.356882 TTGGTTTTCGATTGCAAGACTAG 57.643 39.130 4.94 0.00 0.00 2.57
2032 2253 5.759506 TTTGGTTTTCGATTGCAAGACTA 57.240 34.783 4.94 0.00 0.00 2.59
2033 2254 4.647424 TTTGGTTTTCGATTGCAAGACT 57.353 36.364 4.94 0.00 0.00 3.24
2034 2255 5.040635 TCTTTTGGTTTTCGATTGCAAGAC 58.959 37.500 4.94 0.55 0.00 3.01
2035 2256 5.255710 TCTTTTGGTTTTCGATTGCAAGA 57.744 34.783 4.94 0.00 0.00 3.02
2036 2257 5.964887 TTCTTTTGGTTTTCGATTGCAAG 57.035 34.783 4.94 0.00 0.00 4.01
2037 2258 8.425577 TTTATTCTTTTGGTTTTCGATTGCAA 57.574 26.923 0.00 0.00 0.00 4.08
2038 2259 8.600449 ATTTATTCTTTTGGTTTTCGATTGCA 57.400 26.923 0.00 0.00 0.00 4.08
2059 2280 9.317936 GCAGAATCGATGTGGATATGATATTTA 57.682 33.333 0.00 0.00 0.00 1.40
2060 2281 8.045507 AGCAGAATCGATGTGGATATGATATTT 58.954 33.333 0.00 0.00 0.00 1.40
2061 2282 7.563020 AGCAGAATCGATGTGGATATGATATT 58.437 34.615 0.00 0.00 0.00 1.28
2062 2283 7.122138 AGCAGAATCGATGTGGATATGATAT 57.878 36.000 0.00 0.00 0.00 1.63
2063 2284 6.535963 AGCAGAATCGATGTGGATATGATA 57.464 37.500 0.00 0.00 0.00 2.15
2064 2285 5.417754 AGCAGAATCGATGTGGATATGAT 57.582 39.130 0.00 0.00 0.00 2.45
2065 2286 4.879197 AGCAGAATCGATGTGGATATGA 57.121 40.909 0.00 0.00 0.00 2.15
2066 2287 5.718146 ACTAGCAGAATCGATGTGGATATG 58.282 41.667 0.00 0.00 0.00 1.78
2067 2288 5.991933 ACTAGCAGAATCGATGTGGATAT 57.008 39.130 0.00 0.00 0.00 1.63
2068 2289 6.894339 TTACTAGCAGAATCGATGTGGATA 57.106 37.500 0.00 0.00 0.00 2.59
2069 2290 5.791336 TTACTAGCAGAATCGATGTGGAT 57.209 39.130 0.00 0.00 0.00 3.41
2070 2291 5.592104 TTTACTAGCAGAATCGATGTGGA 57.408 39.130 0.00 0.00 0.00 4.02
2071 2292 6.662414 TTTTTACTAGCAGAATCGATGTGG 57.338 37.500 0.00 0.00 0.00 4.17
2072 2293 6.183360 TGCTTTTTACTAGCAGAATCGATGTG 60.183 38.462 0.00 0.60 43.30 3.21
2073 2294 5.874810 TGCTTTTTACTAGCAGAATCGATGT 59.125 36.000 0.00 0.00 43.30 3.06
2074 2295 6.349973 TGCTTTTTACTAGCAGAATCGATG 57.650 37.500 0.00 0.00 43.30 3.84
2083 2304 6.963083 TTTAGGGTTTGCTTTTTACTAGCA 57.037 33.333 0.00 0.00 46.26 3.49
2084 2305 7.204604 TGTTTTAGGGTTTGCTTTTTACTAGC 58.795 34.615 0.00 0.00 39.10 3.42
2085 2306 9.589111 TTTGTTTTAGGGTTTGCTTTTTACTAG 57.411 29.630 0.00 0.00 0.00 2.57
2086 2307 9.368674 GTTTGTTTTAGGGTTTGCTTTTTACTA 57.631 29.630 0.00 0.00 0.00 1.82
2087 2308 7.063662 CGTTTGTTTTAGGGTTTGCTTTTTACT 59.936 33.333 0.00 0.00 0.00 2.24
2088 2309 7.174746 CGTTTGTTTTAGGGTTTGCTTTTTAC 58.825 34.615 0.00 0.00 0.00 2.01
2089 2310 6.313164 CCGTTTGTTTTAGGGTTTGCTTTTTA 59.687 34.615 0.00 0.00 0.00 1.52
2090 2311 5.122554 CCGTTTGTTTTAGGGTTTGCTTTTT 59.877 36.000 0.00 0.00 0.00 1.94
2091 2312 4.632251 CCGTTTGTTTTAGGGTTTGCTTTT 59.368 37.500 0.00 0.00 0.00 2.27
2092 2313 4.081586 TCCGTTTGTTTTAGGGTTTGCTTT 60.082 37.500 0.00 0.00 0.00 3.51
2093 2314 3.447944 TCCGTTTGTTTTAGGGTTTGCTT 59.552 39.130 0.00 0.00 0.00 3.91
2094 2315 3.025262 TCCGTTTGTTTTAGGGTTTGCT 58.975 40.909 0.00 0.00 0.00 3.91
2095 2316 3.439895 TCCGTTTGTTTTAGGGTTTGC 57.560 42.857 0.00 0.00 0.00 3.68
2096 2317 8.421673 TTTTTATCCGTTTGTTTTAGGGTTTG 57.578 30.769 0.00 0.00 0.00 2.93
2118 2339 4.273318 GGGACCTGATCTGTATGCTTTTT 58.727 43.478 0.00 0.00 0.00 1.94
2119 2340 3.891049 GGGACCTGATCTGTATGCTTTT 58.109 45.455 0.00 0.00 0.00 2.27
2120 2341 3.567478 GGGACCTGATCTGTATGCTTT 57.433 47.619 0.00 0.00 0.00 3.51
2158 2379 4.593864 GAGCCATCGGAGTCGCCC 62.594 72.222 0.00 0.00 36.13 6.13
2159 2380 2.962697 GAAGAGCCATCGGAGTCGCC 62.963 65.000 0.00 0.00 36.13 5.54
2160 2381 1.590259 GAAGAGCCATCGGAGTCGC 60.590 63.158 0.00 0.00 36.13 5.19
2161 2382 0.173481 TTGAAGAGCCATCGGAGTCG 59.827 55.000 0.00 0.00 37.82 4.18
2162 2383 1.646189 GTTGAAGAGCCATCGGAGTC 58.354 55.000 0.00 0.00 0.00 3.36
2163 2384 0.250513 GGTTGAAGAGCCATCGGAGT 59.749 55.000 0.00 0.00 0.00 3.85
2164 2385 0.462759 GGGTTGAAGAGCCATCGGAG 60.463 60.000 0.00 0.00 45.52 4.63
2165 2386 1.602237 GGGTTGAAGAGCCATCGGA 59.398 57.895 0.00 0.00 45.52 4.55
2166 2387 4.225497 GGGTTGAAGAGCCATCGG 57.775 61.111 0.00 0.00 45.52 4.18
2172 2393 1.815840 GCGGCTAGGGTTGAAGAGC 60.816 63.158 0.00 0.00 0.00 4.09
2173 2394 1.153349 GGCGGCTAGGGTTGAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
2174 2395 2.987125 GGCGGCTAGGGTTGAAGA 59.013 61.111 0.00 0.00 0.00 2.87
2175 2396 2.511600 CGGCGGCTAGGGTTGAAG 60.512 66.667 7.61 0.00 0.00 3.02
2176 2397 4.770874 GCGGCGGCTAGGGTTGAA 62.771 66.667 9.78 0.00 35.83 2.69
2198 2419 0.109532 GGGAGAAAGATGGGCTAGGC 59.890 60.000 8.00 8.00 0.00 3.93
2199 2420 0.767998 GGGGAGAAAGATGGGCTAGG 59.232 60.000 0.00 0.00 0.00 3.02
2200 2421 1.696884 GAGGGGAGAAAGATGGGCTAG 59.303 57.143 0.00 0.00 0.00 3.42
2201 2422 1.695989 GGAGGGGAGAAAGATGGGCTA 60.696 57.143 0.00 0.00 0.00 3.93
2202 2423 0.990818 GGAGGGGAGAAAGATGGGCT 60.991 60.000 0.00 0.00 0.00 5.19
2203 2424 0.990818 AGGAGGGGAGAAAGATGGGC 60.991 60.000 0.00 0.00 0.00 5.36
2204 2425 1.135960 GAGGAGGGGAGAAAGATGGG 58.864 60.000 0.00 0.00 0.00 4.00
2205 2426 1.135960 GGAGGAGGGGAGAAAGATGG 58.864 60.000 0.00 0.00 0.00 3.51
2206 2427 1.135960 GGGAGGAGGGGAGAAAGATG 58.864 60.000 0.00 0.00 0.00 2.90
2207 2428 0.399233 CGGGAGGAGGGGAGAAAGAT 60.399 60.000 0.00 0.00 0.00 2.40
2208 2429 1.001760 CGGGAGGAGGGGAGAAAGA 59.998 63.158 0.00 0.00 0.00 2.52
2209 2430 2.736826 GCGGGAGGAGGGGAGAAAG 61.737 68.421 0.00 0.00 0.00 2.62
2210 2431 2.687566 GCGGGAGGAGGGGAGAAA 60.688 66.667 0.00 0.00 0.00 2.52
2211 2432 4.798682 GGCGGGAGGAGGGGAGAA 62.799 72.222 0.00 0.00 0.00 2.87
2292 2513 4.148825 CCCCTGAGACGCGGAAGG 62.149 72.222 12.47 11.29 0.00 3.46
2293 2514 3.382832 ACCCCTGAGACGCGGAAG 61.383 66.667 12.47 1.48 0.00 3.46
2294 2515 3.691342 CACCCCTGAGACGCGGAA 61.691 66.667 12.47 0.00 0.00 4.30
2317 2538 3.443045 CTCCACGCATGTTGGGGC 61.443 66.667 13.70 0.00 34.28 5.80
2318 2539 2.751436 CCTCCACGCATGTTGGGG 60.751 66.667 13.70 11.01 34.28 4.96
2319 2540 2.034066 ACCTCCACGCATGTTGGG 59.966 61.111 13.70 4.38 36.28 4.12
2320 2541 2.981560 GCACCTCCACGCATGTTGG 61.982 63.158 8.76 8.76 0.00 3.77
2321 2542 2.562912 GCACCTCCACGCATGTTG 59.437 61.111 0.00 0.00 0.00 3.33
2322 2543 3.049674 CGCACCTCCACGCATGTT 61.050 61.111 0.00 0.00 0.00 2.71
2323 2544 4.002506 TCGCACCTCCACGCATGT 62.003 61.111 0.00 0.00 0.00 3.21
2324 2545 3.490759 GTCGCACCTCCACGCATG 61.491 66.667 0.00 0.00 0.00 4.06
2325 2546 4.760047 GGTCGCACCTCCACGCAT 62.760 66.667 0.00 0.00 34.73 4.73
2328 2549 4.129737 ATCGGTCGCACCTCCACG 62.130 66.667 4.21 0.00 35.66 4.94
2329 2550 1.381928 TAGATCGGTCGCACCTCCAC 61.382 60.000 0.00 0.00 35.66 4.02
2330 2551 1.077285 TAGATCGGTCGCACCTCCA 60.077 57.895 0.00 0.00 35.66 3.86
2331 2552 0.818445 TCTAGATCGGTCGCACCTCC 60.818 60.000 0.00 0.00 35.66 4.30
2332 2553 1.002251 CTTCTAGATCGGTCGCACCTC 60.002 57.143 0.00 0.00 35.66 3.85
2333 2554 1.025812 CTTCTAGATCGGTCGCACCT 58.974 55.000 0.00 0.00 35.66 4.00
2334 2555 0.595310 GCTTCTAGATCGGTCGCACC 60.595 60.000 0.00 0.00 34.05 5.01
2335 2556 0.930742 CGCTTCTAGATCGGTCGCAC 60.931 60.000 0.00 0.00 0.00 5.34
2336 2557 1.093496 TCGCTTCTAGATCGGTCGCA 61.093 55.000 12.92 0.00 0.00 5.10
2337 2558 0.657951 GTCGCTTCTAGATCGGTCGC 60.658 60.000 12.92 0.00 0.00 5.19
2338 2559 0.656259 TGTCGCTTCTAGATCGGTCG 59.344 55.000 12.92 4.77 0.00 4.79
2339 2560 1.598430 GCTGTCGCTTCTAGATCGGTC 60.598 57.143 12.92 0.00 0.00 4.79
2340 2561 0.382515 GCTGTCGCTTCTAGATCGGT 59.617 55.000 12.92 0.00 0.00 4.69
2341 2562 0.658829 CGCTGTCGCTTCTAGATCGG 60.659 60.000 12.92 0.62 0.00 4.18
2342 2563 0.028242 ACGCTGTCGCTTCTAGATCG 59.972 55.000 8.19 8.19 39.84 3.69
2343 2564 1.849219 CAACGCTGTCGCTTCTAGATC 59.151 52.381 0.00 0.00 39.84 2.75
2344 2565 1.469940 CCAACGCTGTCGCTTCTAGAT 60.470 52.381 0.00 0.00 39.84 1.98
2345 2566 0.109272 CCAACGCTGTCGCTTCTAGA 60.109 55.000 0.00 0.00 39.84 2.43
2346 2567 0.109272 TCCAACGCTGTCGCTTCTAG 60.109 55.000 0.00 0.00 39.84 2.43
2347 2568 0.530744 ATCCAACGCTGTCGCTTCTA 59.469 50.000 0.00 0.00 39.84 2.10
2348 2569 0.320771 AATCCAACGCTGTCGCTTCT 60.321 50.000 0.00 0.00 39.84 2.85
2349 2570 0.095417 GAATCCAACGCTGTCGCTTC 59.905 55.000 0.00 0.00 39.84 3.86
2350 2571 1.626654 CGAATCCAACGCTGTCGCTT 61.627 55.000 0.00 0.00 39.84 4.68
2351 2572 2.094659 CGAATCCAACGCTGTCGCT 61.095 57.895 0.00 0.00 39.84 4.93
2352 2573 2.092291 TCGAATCCAACGCTGTCGC 61.092 57.895 0.00 0.00 39.84 5.19
2353 2574 1.702299 GTCGAATCCAACGCTGTCG 59.298 57.895 0.00 0.00 42.43 4.35
2354 2575 1.683790 CCGTCGAATCCAACGCTGTC 61.684 60.000 0.00 0.00 37.56 3.51
2355 2576 1.736645 CCGTCGAATCCAACGCTGT 60.737 57.895 0.00 0.00 37.56 4.40
2356 2577 3.081133 CCGTCGAATCCAACGCTG 58.919 61.111 0.00 0.00 37.56 5.18
2357 2578 2.813908 GCCGTCGAATCCAACGCT 60.814 61.111 0.00 0.00 37.56 5.07
2358 2579 4.204891 CGCCGTCGAATCCAACGC 62.205 66.667 0.00 0.00 37.56 4.84
2359 2580 3.550992 CCGCCGTCGAATCCAACG 61.551 66.667 0.00 0.00 38.10 4.10
2360 2581 3.861263 GCCGCCGTCGAATCCAAC 61.861 66.667 0.00 0.00 38.10 3.77
2417 2638 4.864334 CTGATCCAGGCCCGCCAC 62.864 72.222 8.74 0.00 38.92 5.01
2450 2671 3.195698 GACATGCCGCCGAAGACC 61.196 66.667 0.00 0.00 0.00 3.85
2451 2672 1.369091 ATTGACATGCCGCCGAAGAC 61.369 55.000 0.00 0.00 0.00 3.01
2452 2673 0.676466 AATTGACATGCCGCCGAAGA 60.676 50.000 0.00 0.00 0.00 2.87
2453 2674 0.523968 CAATTGACATGCCGCCGAAG 60.524 55.000 0.00 0.00 0.00 3.79
2454 2675 1.505807 CAATTGACATGCCGCCGAA 59.494 52.632 0.00 0.00 0.00 4.30
2455 2676 2.405805 CCAATTGACATGCCGCCGA 61.406 57.895 7.12 0.00 0.00 5.54
2456 2677 2.102749 CCAATTGACATGCCGCCG 59.897 61.111 7.12 0.00 0.00 6.46
2457 2678 2.202783 GCCAATTGACATGCCGCC 60.203 61.111 7.12 0.00 0.00 6.13
2458 2679 0.390209 AAAGCCAATTGACATGCCGC 60.390 50.000 7.12 0.00 0.00 6.53
2459 2680 2.423185 TCTAAAGCCAATTGACATGCCG 59.577 45.455 7.12 0.00 0.00 5.69
2460 2681 4.614946 GATCTAAAGCCAATTGACATGCC 58.385 43.478 7.12 0.00 0.00 4.40
2461 2682 4.285292 CGATCTAAAGCCAATTGACATGC 58.715 43.478 7.12 1.25 0.00 4.06
2462 2683 4.790766 GCCGATCTAAAGCCAATTGACATG 60.791 45.833 7.12 0.00 0.00 3.21
2463 2684 3.316308 GCCGATCTAAAGCCAATTGACAT 59.684 43.478 7.12 0.00 0.00 3.06
2464 2685 2.682856 GCCGATCTAAAGCCAATTGACA 59.317 45.455 7.12 0.00 0.00 3.58
2465 2686 2.286418 CGCCGATCTAAAGCCAATTGAC 60.286 50.000 7.12 0.00 0.00 3.18
2466 2687 1.939934 CGCCGATCTAAAGCCAATTGA 59.060 47.619 7.12 0.00 0.00 2.57
2467 2688 1.002468 CCGCCGATCTAAAGCCAATTG 60.002 52.381 0.00 0.00 0.00 2.32
2468 2689 1.308998 CCGCCGATCTAAAGCCAATT 58.691 50.000 0.00 0.00 0.00 2.32
2469 2690 1.166531 GCCGCCGATCTAAAGCCAAT 61.167 55.000 0.00 0.00 0.00 3.16
2470 2691 1.817941 GCCGCCGATCTAAAGCCAA 60.818 57.895 0.00 0.00 0.00 4.52
2471 2692 2.203015 GCCGCCGATCTAAAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
2472 2693 3.338676 CGCCGCCGATCTAAAGCC 61.339 66.667 0.00 0.00 36.29 4.35
2473 2694 3.338676 CCGCCGCCGATCTAAAGC 61.339 66.667 0.00 0.00 36.29 3.51
2474 2695 3.338676 GCCGCCGCCGATCTAAAG 61.339 66.667 0.00 0.00 36.29 1.85
2492 2713 4.083862 GTCCACCAGGCCCTCGAC 62.084 72.222 0.00 0.00 33.74 4.20
2493 2714 4.316823 AGTCCACCAGGCCCTCGA 62.317 66.667 0.00 0.00 33.74 4.04
2494 2715 4.087892 CAGTCCACCAGGCCCTCG 62.088 72.222 0.00 0.00 33.74 4.63
2495 2716 4.416738 GCAGTCCACCAGGCCCTC 62.417 72.222 0.00 0.00 33.74 4.30
2496 2717 4.990910 AGCAGTCCACCAGGCCCT 62.991 66.667 0.00 0.00 33.74 5.19
2497 2718 3.971702 AAGCAGTCCACCAGGCCC 61.972 66.667 0.00 0.00 33.74 5.80
2498 2719 2.674380 CAAGCAGTCCACCAGGCC 60.674 66.667 0.00 0.00 33.74 5.19
2499 2720 2.674380 CCAAGCAGTCCACCAGGC 60.674 66.667 0.00 0.00 33.74 4.85
2500 2721 2.674380 GCCAAGCAGTCCACCAGG 60.674 66.667 0.00 0.00 0.00 4.45
2501 2722 3.052082 CGCCAAGCAGTCCACCAG 61.052 66.667 0.00 0.00 0.00 4.00
2502 2723 4.641645 CCGCCAAGCAGTCCACCA 62.642 66.667 0.00 0.00 0.00 4.17
2517 2738 2.903855 GATCTGCCATGGGTGCCG 60.904 66.667 15.13 0.00 0.00 5.69
2518 2739 1.826921 CAGATCTGCCATGGGTGCC 60.827 63.158 15.13 0.00 0.00 5.01
2519 2740 0.682209 AACAGATCTGCCATGGGTGC 60.682 55.000 22.83 0.00 0.00 5.01
2520 2741 1.064906 AGAACAGATCTGCCATGGGTG 60.065 52.381 22.83 0.00 36.88 4.61
2521 2742 1.293062 AGAACAGATCTGCCATGGGT 58.707 50.000 22.83 0.00 36.88 4.51
2530 2751 1.194781 ACACCGGCCAGAACAGATCT 61.195 55.000 0.00 0.00 39.68 2.75
2531 2752 0.535335 TACACCGGCCAGAACAGATC 59.465 55.000 0.00 0.00 0.00 2.75
2532 2753 0.537188 CTACACCGGCCAGAACAGAT 59.463 55.000 0.00 0.00 0.00 2.90
2533 2754 1.972198 CTACACCGGCCAGAACAGA 59.028 57.895 0.00 0.00 0.00 3.41
2534 2755 1.741770 GCTACACCGGCCAGAACAG 60.742 63.158 0.00 0.00 0.00 3.16
2535 2756 2.345991 GCTACACCGGCCAGAACA 59.654 61.111 0.00 0.00 0.00 3.18
2544 2765 0.108804 CACCACTACTGGCTACACCG 60.109 60.000 0.00 0.00 42.08 4.94
2545 2766 0.249398 CCACCACTACTGGCTACACC 59.751 60.000 0.00 0.00 42.08 4.16
2546 2767 3.834732 CCACCACTACTGGCTACAC 57.165 57.895 0.00 0.00 42.08 2.90
2552 2773 0.620556 AAGATGGCCACCACTACTGG 59.379 55.000 8.16 0.00 44.26 4.00
2553 2774 1.556911 AGAAGATGGCCACCACTACTG 59.443 52.381 8.16 0.00 35.80 2.74
2554 2775 1.958288 AGAAGATGGCCACCACTACT 58.042 50.000 8.16 0.00 35.80 2.57
2555 2776 2.633488 GAAGAAGATGGCCACCACTAC 58.367 52.381 8.16 0.00 35.80 2.73
2556 2777 1.207089 CGAAGAAGATGGCCACCACTA 59.793 52.381 8.16 0.00 35.80 2.74
2557 2778 0.036010 CGAAGAAGATGGCCACCACT 60.036 55.000 8.16 5.17 35.80 4.00
2558 2779 0.321653 ACGAAGAAGATGGCCACCAC 60.322 55.000 8.16 2.33 35.80 4.16
2559 2780 0.036388 GACGAAGAAGATGGCCACCA 60.036 55.000 8.16 0.00 38.19 4.17
2560 2781 1.084370 CGACGAAGAAGATGGCCACC 61.084 60.000 8.16 0.00 0.00 4.61
2561 2782 1.084370 CCGACGAAGAAGATGGCCAC 61.084 60.000 8.16 1.58 0.00 5.01
2562 2783 1.218047 CCGACGAAGAAGATGGCCA 59.782 57.895 8.56 8.56 0.00 5.36
2563 2784 2.174319 GCCGACGAAGAAGATGGCC 61.174 63.158 0.00 0.00 36.51 5.36
2564 2785 2.517450 CGCCGACGAAGAAGATGGC 61.517 63.158 0.00 0.00 43.93 4.40
2565 2786 1.878522 CCGCCGACGAAGAAGATGG 60.879 63.158 0.00 0.00 43.93 3.51
2566 2787 1.153823 ACCGCCGACGAAGAAGATG 60.154 57.895 0.00 0.00 43.93 2.90
2567 2788 1.153823 CACCGCCGACGAAGAAGAT 60.154 57.895 0.00 0.00 43.93 2.40
2568 2789 2.257371 CACCGCCGACGAAGAAGA 59.743 61.111 0.00 0.00 43.93 2.87
2569 2790 2.809601 CCACCGCCGACGAAGAAG 60.810 66.667 0.00 0.00 43.93 2.85
2587 2808 2.826777 ATCACCAAGCTTCTGGCCGG 62.827 60.000 4.71 4.71 40.45 6.13
2588 2809 0.962356 AATCACCAAGCTTCTGGCCG 60.962 55.000 4.24 0.00 40.45 6.13
2589 2810 0.529378 CAATCACCAAGCTTCTGGCC 59.471 55.000 4.24 0.00 40.45 5.36
2590 2811 0.529378 CCAATCACCAAGCTTCTGGC 59.471 55.000 4.24 0.00 40.45 4.85
2591 2812 2.205022 TCCAATCACCAAGCTTCTGG 57.795 50.000 2.71 2.71 42.68 3.86
2592 2813 4.673580 CGAAATCCAATCACCAAGCTTCTG 60.674 45.833 0.00 0.00 0.00 3.02
2593 2814 3.441572 CGAAATCCAATCACCAAGCTTCT 59.558 43.478 0.00 0.00 0.00 2.85
2594 2815 3.440173 TCGAAATCCAATCACCAAGCTTC 59.560 43.478 0.00 0.00 0.00 3.86
2595 2816 3.420893 TCGAAATCCAATCACCAAGCTT 58.579 40.909 0.00 0.00 0.00 3.74
2596 2817 3.012518 CTCGAAATCCAATCACCAAGCT 58.987 45.455 0.00 0.00 0.00 3.74
2597 2818 3.009723 TCTCGAAATCCAATCACCAAGC 58.990 45.455 0.00 0.00 0.00 4.01
2598 2819 5.415415 GATCTCGAAATCCAATCACCAAG 57.585 43.478 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.