Multiple sequence alignment - TraesCS5A01G077300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G077300 chr5A 100.000 1764 0 0 717 2480 94092113 94093876 0.000000e+00 3258.0
1 TraesCS5A01G077300 chr5A 88.533 593 58 6 972 1559 94310774 94311361 0.000000e+00 710.0
2 TraesCS5A01G077300 chr5A 100.000 303 0 0 1 303 94091397 94091699 5.990000e-156 560.0
3 TraesCS5A01G077300 chr5A 78.102 137 18 4 831 957 94310223 94310357 2.640000e-10 76.8
4 TraesCS5A01G077300 chr5D 93.146 1459 55 16 717 2164 104143235 104141811 0.000000e+00 2098.0
5 TraesCS5A01G077300 chr5D 84.838 831 74 29 831 1623 104113316 104112500 0.000000e+00 789.0
6 TraesCS5A01G077300 chr5D 97.348 264 5 2 2159 2422 124191618 124191879 4.870000e-122 448.0
7 TraesCS5A01G077300 chr5D 87.773 229 25 2 1830 2056 536086337 536086110 5.260000e-67 265.0
8 TraesCS5A01G077300 chr5D 95.062 162 8 0 76 237 104145682 104145521 3.170000e-64 255.0
9 TraesCS5A01G077300 chr5D 96.774 62 1 1 2420 2480 104141815 104141754 4.360000e-18 102.0
10 TraesCS5A01G077300 chr5D 100.000 30 0 0 272 301 104143333 104143304 3.450000e-04 56.5
11 TraesCS5A01G077300 chr5B 91.010 1168 52 20 740 1870 113457103 113455952 0.000000e+00 1526.0
12 TraesCS5A01G077300 chr5B 85.006 827 80 24 831 1623 113328147 113327331 0.000000e+00 800.0
13 TraesCS5A01G077300 chr5B 85.866 283 17 9 1 275 113457478 113457211 1.880000e-71 279.0
14 TraesCS5A01G077300 chr5B 92.655 177 13 0 1880 2056 113455986 113455810 3.170000e-64 255.0
15 TraesCS5A01G077300 chr5B 91.429 105 9 0 2058 2162 113455720 113455616 7.150000e-31 145.0
16 TraesCS5A01G077300 chr5B 94.545 55 2 1 2425 2479 113455613 113455560 1.580000e-12 84.2
17 TraesCS5A01G077300 chr6B 85.404 644 69 14 859 1480 17091808 17091168 0.000000e+00 645.0
18 TraesCS5A01G077300 chr6B 78.472 144 27 4 1822 1964 157485835 157485695 9.450000e-15 91.6
19 TraesCS5A01G077300 chr6D 83.685 711 75 22 834 1524 9195697 9195008 1.250000e-177 632.0
20 TraesCS5A01G077300 chr6D 84.592 662 67 20 834 1480 9147022 9147663 2.090000e-175 625.0
21 TraesCS5A01G077300 chr6D 97.338 263 6 1 2160 2422 256101890 256102151 1.750000e-121 446.0
22 TraesCS5A01G077300 chr6A 80.985 873 96 41 859 1686 10138249 10137402 1.620000e-176 628.0
23 TraesCS5A01G077300 chr6A 95.390 282 10 3 2144 2424 76520955 76520676 1.750000e-121 446.0
24 TraesCS5A01G077300 chr3D 97.070 273 7 1 2160 2431 282527796 282527524 2.250000e-125 459.0
25 TraesCS5A01G077300 chr3D 97.727 264 5 1 2159 2422 83428534 83428796 1.050000e-123 453.0
26 TraesCS5A01G077300 chr3A 98.099 263 4 1 2161 2423 161457422 161457161 8.080000e-125 457.0
27 TraesCS5A01G077300 chr7D 97.348 264 5 2 2161 2423 101582739 101583001 4.870000e-122 448.0
28 TraesCS5A01G077300 chr7B 95.341 279 9 4 2156 2433 598955041 598954766 8.140000e-120 440.0
29 TraesCS5A01G077300 chr2B 95.018 281 10 4 2145 2423 29981407 29981685 2.930000e-119 438.0
30 TraesCS5A01G077300 chr2B 89.091 55 6 0 1822 1876 622923464 622923518 4.430000e-08 69.4
31 TraesCS5A01G077300 chr4A 86.344 227 27 2 1821 2047 635727071 635727293 6.850000e-61 244.0
32 TraesCS5A01G077300 chr3B 77.273 154 25 7 1821 1972 325804906 325804761 5.680000e-12 82.4
33 TraesCS5A01G077300 chr3B 76.331 169 24 12 1837 2003 573981513 573981359 2.640000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G077300 chr5A 94091397 94093876 2479 False 1909.000 3258 100.0000 1 2480 2 chr5A.!!$F1 2479
1 TraesCS5A01G077300 chr5A 94310223 94311361 1138 False 393.400 710 83.3175 831 1559 2 chr5A.!!$F2 728
2 TraesCS5A01G077300 chr5D 104112500 104113316 816 True 789.000 789 84.8380 831 1623 1 chr5D.!!$R1 792
3 TraesCS5A01G077300 chr5D 104141754 104145682 3928 True 627.875 2098 96.2455 76 2480 4 chr5D.!!$R3 2404
4 TraesCS5A01G077300 chr5B 113327331 113328147 816 True 800.000 800 85.0060 831 1623 1 chr5B.!!$R1 792
5 TraesCS5A01G077300 chr5B 113455560 113457478 1918 True 457.840 1526 91.1010 1 2479 5 chr5B.!!$R2 2478
6 TraesCS5A01G077300 chr6B 17091168 17091808 640 True 645.000 645 85.4040 859 1480 1 chr6B.!!$R1 621
7 TraesCS5A01G077300 chr6D 9195008 9195697 689 True 632.000 632 83.6850 834 1524 1 chr6D.!!$R1 690
8 TraesCS5A01G077300 chr6D 9147022 9147663 641 False 625.000 625 84.5920 834 1480 1 chr6D.!!$F1 646
9 TraesCS5A01G077300 chr6A 10137402 10138249 847 True 628.000 628 80.9850 859 1686 1 chr6A.!!$R1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 88 0.036952 CTGCCTCATGTTCGTCCTGT 60.037 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 4271 0.31179 GACTGACGACGGTACAACCA 59.688 55.0 0.0 0.0 38.47 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 68 2.158957 ACTATGGAGGCATACGTTGGTG 60.159 50.000 0.00 0.00 0.00 4.17
65 79 1.968017 CGTTGGTGCTGCCTCATGT 60.968 57.895 0.00 0.00 38.35 3.21
66 80 1.518056 CGTTGGTGCTGCCTCATGTT 61.518 55.000 0.00 0.00 38.35 2.71
67 81 0.242017 GTTGGTGCTGCCTCATGTTC 59.758 55.000 0.00 0.00 38.35 3.18
68 82 1.236616 TTGGTGCTGCCTCATGTTCG 61.237 55.000 0.00 0.00 38.35 3.95
69 83 1.672356 GGTGCTGCCTCATGTTCGT 60.672 57.895 0.00 0.00 0.00 3.85
70 84 1.639298 GGTGCTGCCTCATGTTCGTC 61.639 60.000 0.00 0.00 0.00 4.20
71 85 1.375908 TGCTGCCTCATGTTCGTCC 60.376 57.895 0.00 0.00 0.00 4.79
72 86 1.078848 GCTGCCTCATGTTCGTCCT 60.079 57.895 0.00 0.00 0.00 3.85
73 87 1.364626 GCTGCCTCATGTTCGTCCTG 61.365 60.000 0.00 0.00 0.00 3.86
74 88 0.036952 CTGCCTCATGTTCGTCCTGT 60.037 55.000 0.00 0.00 0.00 4.00
103 117 0.319900 GGTGCACAGATGACACGAGT 60.320 55.000 20.43 0.00 35.16 4.18
109 123 4.879545 TGCACAGATGACACGAGTACTATA 59.120 41.667 0.00 0.00 0.00 1.31
116 130 3.064958 TGACACGAGTACTATAGCTGCAC 59.935 47.826 1.02 0.00 0.00 4.57
135 149 1.870016 GCGAGTGCAGTAGAGCGAC 60.870 63.158 5.76 0.00 42.15 5.19
203 217 4.632688 ACACATAATTGGGCGTGTACTTAC 59.367 41.667 0.00 0.00 40.66 2.34
212 226 2.240040 GCGTGTACTTACTCTCGTGTG 58.760 52.381 0.00 0.00 0.00 3.82
253 2440 4.595762 TGTTACTCCTACTCAACCACAC 57.404 45.455 0.00 0.00 0.00 3.82
254 2441 3.322828 TGTTACTCCTACTCAACCACACC 59.677 47.826 0.00 0.00 0.00 4.16
255 2442 2.097110 ACTCCTACTCAACCACACCA 57.903 50.000 0.00 0.00 0.00 4.17
256 2443 2.404559 ACTCCTACTCAACCACACCAA 58.595 47.619 0.00 0.00 0.00 3.67
257 2444 2.775384 ACTCCTACTCAACCACACCAAA 59.225 45.455 0.00 0.00 0.00 3.28
258 2445 3.394606 ACTCCTACTCAACCACACCAAAT 59.605 43.478 0.00 0.00 0.00 2.32
259 2446 4.595781 ACTCCTACTCAACCACACCAAATA 59.404 41.667 0.00 0.00 0.00 1.40
260 2447 5.250774 ACTCCTACTCAACCACACCAAATAT 59.749 40.000 0.00 0.00 0.00 1.28
261 2448 6.134535 TCCTACTCAACCACACCAAATATT 57.865 37.500 0.00 0.00 0.00 1.28
262 2449 6.548321 TCCTACTCAACCACACCAAATATTT 58.452 36.000 0.00 0.00 0.00 1.40
263 2450 7.007723 TCCTACTCAACCACACCAAATATTTT 58.992 34.615 0.00 0.00 0.00 1.82
264 2451 7.507616 TCCTACTCAACCACACCAAATATTTTT 59.492 33.333 0.00 0.00 0.00 1.94
733 2920 4.181010 CTAGCCCGGCCACATGCT 62.181 66.667 5.55 7.06 40.92 3.79
734 2921 3.704231 CTAGCCCGGCCACATGCTT 62.704 63.158 5.55 0.00 40.92 3.91
735 2922 3.280938 TAGCCCGGCCACATGCTTT 62.281 57.895 5.55 0.00 40.92 3.51
736 2923 4.440127 GCCCGGCCACATGCTTTG 62.440 66.667 2.24 0.00 40.92 2.77
737 2924 2.676121 CCCGGCCACATGCTTTGA 60.676 61.111 2.24 0.00 40.92 2.69
738 2925 2.703798 CCCGGCCACATGCTTTGAG 61.704 63.158 2.24 0.00 40.92 3.02
813 3013 3.113322 TCGTCGCACTAACAATGATAGC 58.887 45.455 0.00 0.00 0.00 2.97
896 3110 9.975218 CCCAAGCCATATTAACCTATAAATACT 57.025 33.333 0.00 0.00 0.00 2.12
911 3125 1.786937 ATACTCTCACAGCCCTGAGG 58.213 55.000 1.69 0.00 38.62 3.86
1308 3953 0.247576 CGTACTACGAGGTGAGCACG 60.248 60.000 2.17 0.00 46.05 5.34
1344 3989 2.750637 ATCCGCGTCTCCGTCACT 60.751 61.111 4.92 0.00 36.15 3.41
1481 4126 7.768807 AGATCATCTACTACAACCCATAGAC 57.231 40.000 0.00 0.00 0.00 2.59
1624 4327 5.178809 GTGTCGGATTTGCAGTTTAACTACT 59.821 40.000 0.00 0.00 0.00 2.57
1625 4328 6.366877 GTGTCGGATTTGCAGTTTAACTACTA 59.633 38.462 0.00 0.00 0.00 1.82
1672 4384 1.866015 ACATGATCGGAGGGAAGACA 58.134 50.000 0.00 0.00 0.00 3.41
1819 4538 8.113462 TGCCTATTTGAATCCTATAATTACCCC 58.887 37.037 0.00 0.00 0.00 4.95
1827 4546 7.293771 TGAATCCTATAATTACCCCAACAGCTA 59.706 37.037 0.00 0.00 0.00 3.32
1840 4575 0.478507 ACAGCTAGTTTGGCACCCTT 59.521 50.000 0.00 0.00 0.00 3.95
1841 4576 1.168714 CAGCTAGTTTGGCACCCTTC 58.831 55.000 0.00 0.00 0.00 3.46
1842 4577 0.771127 AGCTAGTTTGGCACCCTTCA 59.229 50.000 0.00 0.00 0.00 3.02
1843 4578 1.355720 AGCTAGTTTGGCACCCTTCAT 59.644 47.619 0.00 0.00 0.00 2.57
1844 4579 2.171003 GCTAGTTTGGCACCCTTCATT 58.829 47.619 0.00 0.00 0.00 2.57
1845 4580 2.562738 GCTAGTTTGGCACCCTTCATTT 59.437 45.455 0.00 0.00 0.00 2.32
1846 4581 3.367395 GCTAGTTTGGCACCCTTCATTTC 60.367 47.826 0.00 0.00 0.00 2.17
1847 4582 2.676748 AGTTTGGCACCCTTCATTTCA 58.323 42.857 0.00 0.00 0.00 2.69
1848 4583 3.242011 AGTTTGGCACCCTTCATTTCAT 58.758 40.909 0.00 0.00 0.00 2.57
1849 4584 3.647590 AGTTTGGCACCCTTCATTTCATT 59.352 39.130 0.00 0.00 0.00 2.57
1850 4585 4.102996 AGTTTGGCACCCTTCATTTCATTT 59.897 37.500 0.00 0.00 0.00 2.32
1851 4586 3.959535 TGGCACCCTTCATTTCATTTC 57.040 42.857 0.00 0.00 0.00 2.17
1852 4587 3.237746 TGGCACCCTTCATTTCATTTCA 58.762 40.909 0.00 0.00 0.00 2.69
1853 4588 3.839490 TGGCACCCTTCATTTCATTTCAT 59.161 39.130 0.00 0.00 0.00 2.57
1854 4589 4.286549 TGGCACCCTTCATTTCATTTCATT 59.713 37.500 0.00 0.00 0.00 2.57
1855 4590 5.221884 TGGCACCCTTCATTTCATTTCATTT 60.222 36.000 0.00 0.00 0.00 2.32
1856 4591 5.122711 GGCACCCTTCATTTCATTTCATTTG 59.877 40.000 0.00 0.00 0.00 2.32
1857 4592 5.122711 GCACCCTTCATTTCATTTCATTTGG 59.877 40.000 0.00 0.00 0.00 3.28
1858 4593 6.232692 CACCCTTCATTTCATTTCATTTGGT 58.767 36.000 0.00 0.00 0.00 3.67
1859 4594 7.385267 CACCCTTCATTTCATTTCATTTGGTA 58.615 34.615 0.00 0.00 0.00 3.25
1860 4595 7.546667 CACCCTTCATTTCATTTCATTTGGTAG 59.453 37.037 0.00 0.00 0.00 3.18
1861 4596 7.454380 ACCCTTCATTTCATTTCATTTGGTAGA 59.546 33.333 0.00 0.00 0.00 2.59
1862 4597 8.313292 CCCTTCATTTCATTTCATTTGGTAGAA 58.687 33.333 0.00 0.00 0.00 2.10
1863 4598 9.709495 CCTTCATTTCATTTCATTTGGTAGAAA 57.291 29.630 0.00 0.00 38.04 2.52
1876 4611 9.656040 TCATTTGGTAGAAATGAAATGAAATGG 57.344 29.630 7.25 0.00 41.92 3.16
1877 4612 9.656040 CATTTGGTAGAAATGAAATGAAATGGA 57.344 29.630 0.00 0.00 39.36 3.41
1900 4635 3.125656 TCTCCATGGGGATCTCATTTGT 58.874 45.455 11.36 0.00 43.91 2.83
2052 4787 7.451501 TCAGAAATGAACTTCATAATGCACA 57.548 32.000 4.65 0.00 35.76 4.57
2066 4889 7.734942 TCATAATGCACAGACTAATCCACATA 58.265 34.615 0.00 0.00 0.00 2.29
2148 4971 4.114794 CAAGCAAGACAAAGGTTCAAAGG 58.885 43.478 0.00 0.00 0.00 3.11
2158 4981 6.163476 ACAAAGGTTCAAAGGTTCAAAGTTC 58.837 36.000 0.00 0.00 0.00 3.01
2159 4982 4.632538 AGGTTCAAAGGTTCAAAGTTCG 57.367 40.909 0.00 0.00 0.00 3.95
2160 4983 4.014406 AGGTTCAAAGGTTCAAAGTTCGT 58.986 39.130 0.00 0.00 0.00 3.85
2161 4984 5.187687 AGGTTCAAAGGTTCAAAGTTCGTA 58.812 37.500 0.00 0.00 0.00 3.43
2162 4985 5.065602 AGGTTCAAAGGTTCAAAGTTCGTAC 59.934 40.000 0.00 0.00 0.00 3.67
2163 4986 5.065602 GGTTCAAAGGTTCAAAGTTCGTACT 59.934 40.000 0.00 0.00 35.68 2.73
2164 4987 5.978934 TCAAAGGTTCAAAGTTCGTACTC 57.021 39.130 0.00 0.00 31.99 2.59
2165 4988 4.812626 TCAAAGGTTCAAAGTTCGTACTCC 59.187 41.667 0.00 0.00 31.99 3.85
2166 4989 3.397849 AGGTTCAAAGTTCGTACTCCC 57.602 47.619 0.00 0.00 31.99 4.30
2167 4990 2.970640 AGGTTCAAAGTTCGTACTCCCT 59.029 45.455 0.00 0.00 31.99 4.20
2168 4991 3.006644 AGGTTCAAAGTTCGTACTCCCTC 59.993 47.826 0.00 0.00 31.99 4.30
2169 4992 3.324117 GTTCAAAGTTCGTACTCCCTCC 58.676 50.000 0.00 0.00 31.99 4.30
2170 4993 1.542915 TCAAAGTTCGTACTCCCTCCG 59.457 52.381 0.00 0.00 31.99 4.63
2171 4994 1.271656 CAAAGTTCGTACTCCCTCCGT 59.728 52.381 0.00 0.00 31.99 4.69
2172 4995 1.625511 AAGTTCGTACTCCCTCCGTT 58.374 50.000 0.00 0.00 31.99 4.44
2173 4996 1.625511 AGTTCGTACTCCCTCCGTTT 58.374 50.000 0.00 0.00 0.00 3.60
2174 4997 1.543358 AGTTCGTACTCCCTCCGTTTC 59.457 52.381 0.00 0.00 0.00 2.78
2175 4998 1.543358 GTTCGTACTCCCTCCGTTTCT 59.457 52.381 0.00 0.00 0.00 2.52
2176 4999 1.915141 TCGTACTCCCTCCGTTTCTT 58.085 50.000 0.00 0.00 0.00 2.52
2177 5000 2.242043 TCGTACTCCCTCCGTTTCTTT 58.758 47.619 0.00 0.00 0.00 2.52
2178 5001 2.629617 TCGTACTCCCTCCGTTTCTTTT 59.370 45.455 0.00 0.00 0.00 2.27
2179 5002 3.070015 TCGTACTCCCTCCGTTTCTTTTT 59.930 43.478 0.00 0.00 0.00 1.94
2180 5003 4.280677 TCGTACTCCCTCCGTTTCTTTTTA 59.719 41.667 0.00 0.00 0.00 1.52
2181 5004 4.624452 CGTACTCCCTCCGTTTCTTTTTAG 59.376 45.833 0.00 0.00 0.00 1.85
2182 5005 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2183 5006 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2184 5007 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
2185 5008 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
2186 5009 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
2187 5010 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
2188 5011 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
2189 5012 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
2190 5013 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
2191 5014 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
2192 5015 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
2193 5016 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
2194 5017 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
2195 5018 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
2196 5019 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
2197 5020 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
2198 5021 8.205131 TCTTTTTAGTCCGCATATAAGGTTTC 57.795 34.615 0.00 0.00 0.00 2.78
2199 5022 6.592798 TTTTAGTCCGCATATAAGGTTTCG 57.407 37.500 0.00 0.00 0.00 3.46
2200 5023 3.814005 AGTCCGCATATAAGGTTTCGT 57.186 42.857 0.00 0.00 0.00 3.85
2201 5024 3.714391 AGTCCGCATATAAGGTTTCGTC 58.286 45.455 0.00 0.00 0.00 4.20
2202 5025 3.131577 AGTCCGCATATAAGGTTTCGTCA 59.868 43.478 0.00 0.00 0.00 4.35
2203 5026 3.866910 GTCCGCATATAAGGTTTCGTCAA 59.133 43.478 0.00 0.00 0.00 3.18
2204 5027 4.330620 GTCCGCATATAAGGTTTCGTCAAA 59.669 41.667 0.00 0.00 0.00 2.69
2205 5028 4.569162 TCCGCATATAAGGTTTCGTCAAAG 59.431 41.667 0.00 0.00 0.00 2.77
2206 5029 4.331717 CCGCATATAAGGTTTCGTCAAAGT 59.668 41.667 0.00 0.00 0.00 2.66
2207 5030 5.490213 CGCATATAAGGTTTCGTCAAAGTC 58.510 41.667 0.00 0.00 0.00 3.01
2208 5031 5.062934 CGCATATAAGGTTTCGTCAAAGTCA 59.937 40.000 0.00 0.00 0.00 3.41
2209 5032 6.401688 CGCATATAAGGTTTCGTCAAAGTCAA 60.402 38.462 0.00 0.00 0.00 3.18
2210 5033 7.302524 GCATATAAGGTTTCGTCAAAGTCAAA 58.697 34.615 0.00 0.00 0.00 2.69
2211 5034 7.270579 GCATATAAGGTTTCGTCAAAGTCAAAC 59.729 37.037 0.00 0.00 0.00 2.93
2212 5035 6.937436 ATAAGGTTTCGTCAAAGTCAAACT 57.063 33.333 0.00 0.00 0.00 2.66
2213 5036 5.638596 AAGGTTTCGTCAAAGTCAAACTT 57.361 34.783 0.00 0.00 40.80 2.66
2290 5113 9.923143 AAAATCAATATTATCAGATGCACCATG 57.077 29.630 0.00 0.00 0.00 3.66
2291 5114 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
2292 5115 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
2293 5116 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
2294 5117 8.570488 TCAATATTATCAGATGCACCATGAAAC 58.430 33.333 0.00 0.00 0.00 2.78
2295 5118 4.880886 TTATCAGATGCACCATGAAACG 57.119 40.909 0.00 0.00 0.00 3.60
2296 5119 2.183478 TCAGATGCACCATGAAACGT 57.817 45.000 0.00 0.00 0.00 3.99
2297 5120 3.326836 TCAGATGCACCATGAAACGTA 57.673 42.857 0.00 0.00 0.00 3.57
2298 5121 3.872696 TCAGATGCACCATGAAACGTAT 58.127 40.909 0.00 0.00 0.00 3.06
2299 5122 4.260985 TCAGATGCACCATGAAACGTATT 58.739 39.130 0.00 0.00 0.00 1.89
2300 5123 4.699735 TCAGATGCACCATGAAACGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
2301 5124 5.182950 TCAGATGCACCATGAAACGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
2302 5125 5.512788 CAGATGCACCATGAAACGTATTTTC 59.487 40.000 0.00 0.00 43.63 2.29
2373 5196 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
2383 5206 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
2384 5207 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
2385 5208 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
2386 5209 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
2387 5210 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
2388 5211 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
2389 5212 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
2390 5213 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
2391 5214 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
2392 5215 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
2396 5219 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
2397 5220 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
2398 5221 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
2399 5222 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
2400 5223 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
2401 5224 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
2402 5225 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
2403 5226 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
2404 5227 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
2405 5228 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
2406 5229 8.514330 ACCAAATCTTATATGCGGAGTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
2407 5230 8.621286 ACCAAATCTTATATGCGGAGTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
2408 5231 8.836413 CCAAATCTTATATGCGGAGTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
2412 5235 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
2413 5236 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
2414 5237 2.836262 TGCGGAGTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
2415 5238 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
2416 5239 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
2417 5240 3.656559 CGGAGTAAAAAGAAACGGAGGA 58.343 45.455 0.00 0.00 0.00 3.71
2418 5241 4.060205 CGGAGTAAAAAGAAACGGAGGAA 58.940 43.478 0.00 0.00 0.00 3.36
2423 5246 5.994054 AGTAAAAAGAAACGGAGGAAGTACC 59.006 40.000 0.00 0.00 39.35 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.040544 GCAGCACCAACGTATGCCT 61.041 57.895 13.89 2.00 43.12 4.75
42 43 1.982073 GAGGCAGCACCAACGTATGC 61.982 60.000 10.51 10.51 43.14 3.14
43 44 0.673333 TGAGGCAGCACCAACGTATG 60.673 55.000 0.00 0.00 43.14 2.39
45 46 0.673333 CATGAGGCAGCACCAACGTA 60.673 55.000 0.00 0.00 43.14 3.57
54 68 1.078848 AGGACGAACATGAGGCAGC 60.079 57.895 0.00 0.00 0.00 5.25
65 79 1.577922 CGAGACGGAACAGGACGAA 59.422 57.895 0.00 0.00 0.00 3.85
66 80 3.260931 CGAGACGGAACAGGACGA 58.739 61.111 0.00 0.00 0.00 4.20
103 117 1.002792 CACTCGCGTGCAGCTATAGTA 60.003 52.381 5.77 0.00 45.59 1.82
116 130 2.946597 CGCTCTACTGCACTCGCG 60.947 66.667 0.00 0.00 42.97 5.87
135 149 9.099454 GAATAGGGAGTACAACTGTTTTATCTG 57.901 37.037 0.00 0.00 0.00 2.90
179 193 3.006940 AGTACACGCCCAATTATGTGTG 58.993 45.455 14.95 14.95 44.62 3.82
203 217 0.038159 GGTCCTTGGACACACGAGAG 60.038 60.000 19.90 0.00 0.00 3.20
212 226 0.106918 TGTTGTGTGGGTCCTTGGAC 60.107 55.000 11.13 11.13 0.00 4.02
272 2459 1.137872 TGGCTCGCAACAAAATTTGGT 59.862 42.857 10.71 0.00 34.12 3.67
727 2914 2.476619 CGTTCGTTCTCTCAAAGCATGT 59.523 45.455 0.00 0.00 0.00 3.21
728 2915 2.476619 ACGTTCGTTCTCTCAAAGCATG 59.523 45.455 0.00 0.00 0.00 4.06
729 2916 2.755650 ACGTTCGTTCTCTCAAAGCAT 58.244 42.857 0.00 0.00 0.00 3.79
730 2917 2.218953 ACGTTCGTTCTCTCAAAGCA 57.781 45.000 0.00 0.00 0.00 3.91
731 2918 3.047796 TGTACGTTCGTTCTCTCAAAGC 58.952 45.455 2.62 0.00 0.00 3.51
732 2919 3.424529 GGTGTACGTTCGTTCTCTCAAAG 59.575 47.826 2.62 0.00 0.00 2.77
733 2920 3.374745 GGTGTACGTTCGTTCTCTCAAA 58.625 45.455 2.62 0.00 0.00 2.69
734 2921 2.602933 CGGTGTACGTTCGTTCTCTCAA 60.603 50.000 2.62 0.00 37.93 3.02
735 2922 1.069703 CGGTGTACGTTCGTTCTCTCA 60.070 52.381 2.62 0.00 37.93 3.27
736 2923 1.195448 TCGGTGTACGTTCGTTCTCTC 59.805 52.381 2.62 0.00 44.69 3.20
737 2924 1.196354 CTCGGTGTACGTTCGTTCTCT 59.804 52.381 2.62 0.00 44.69 3.10
738 2925 1.195448 TCTCGGTGTACGTTCGTTCTC 59.805 52.381 2.62 0.00 44.69 2.87
911 3125 2.630580 TGGTTTGGGTTGAGGTTTATGC 59.369 45.455 0.00 0.00 0.00 3.14
998 3631 1.596934 GACTTGGAGGACGCCATGA 59.403 57.895 13.40 0.00 37.86 3.07
1196 3841 3.164011 CGTCGAACGACTCGTGCC 61.164 66.667 21.67 0.00 46.05 5.01
1481 4126 2.167808 CTACGTAGGCGGACGATCGG 62.168 65.000 20.98 2.45 45.82 4.18
1575 4271 0.311790 GACTGACGACGGTACAACCA 59.688 55.000 0.00 0.00 38.47 3.67
1819 4538 0.598065 GGGTGCCAAACTAGCTGTTG 59.402 55.000 0.00 0.00 39.13 3.33
1827 4546 2.676748 TGAAATGAAGGGTGCCAAACT 58.323 42.857 0.00 0.00 0.00 2.66
1850 4585 9.656040 CCATTTCATTTCATTTCTACCAAATGA 57.344 29.630 5.79 5.79 42.82 2.57
1851 4586 9.656040 TCCATTTCATTTCATTTCTACCAAATG 57.344 29.630 1.33 1.33 37.51 2.32
1854 4589 9.874205 GATTCCATTTCATTTCATTTCTACCAA 57.126 29.630 0.00 0.00 0.00 3.67
1855 4590 9.258629 AGATTCCATTTCATTTCATTTCTACCA 57.741 29.630 0.00 0.00 0.00 3.25
1856 4591 9.741647 GAGATTCCATTTCATTTCATTTCTACC 57.258 33.333 0.00 0.00 0.00 3.18
1857 4592 9.741647 GGAGATTCCATTTCATTTCATTTCTAC 57.258 33.333 0.00 0.00 36.28 2.59
1858 4593 9.478238 TGGAGATTCCATTTCATTTCATTTCTA 57.522 29.630 0.00 0.00 42.67 2.10
1859 4594 8.370266 TGGAGATTCCATTTCATTTCATTTCT 57.630 30.769 0.00 0.00 42.67 2.52
1875 4610 2.342659 TGAGATCCCCATGGAGATTCC 58.657 52.381 15.22 7.55 46.08 3.01
1876 4611 4.654389 AATGAGATCCCCATGGAGATTC 57.346 45.455 15.22 11.66 46.08 2.52
1877 4612 4.169461 ACAAATGAGATCCCCATGGAGATT 59.831 41.667 15.22 1.83 46.08 2.40
1878 4613 3.725797 ACAAATGAGATCCCCATGGAGAT 59.274 43.478 15.22 11.84 46.08 2.75
1879 4614 3.125656 ACAAATGAGATCCCCATGGAGA 58.874 45.455 15.22 5.62 46.08 3.71
1892 4627 6.465948 TGGATTTCCATTCCAAACAAATGAG 58.534 36.000 0.00 0.00 42.01 2.90
1900 4635 3.645212 TGCAACTGGATTTCCATTCCAAA 59.355 39.130 0.00 0.00 46.46 3.28
2011 4746 9.513906 TCATTTCTGAAGTTGGATTATGTGTTA 57.486 29.630 0.00 0.00 0.00 2.41
2031 4766 7.533426 AGTCTGTGCATTATGAAGTTCATTTC 58.467 34.615 22.90 10.52 38.26 2.17
2117 4940 0.819259 TGTCTTGCTTGTGTCAGGCC 60.819 55.000 0.00 0.00 35.55 5.19
2148 4971 3.324117 GGAGGGAGTACGAACTTTGAAC 58.676 50.000 0.00 0.00 35.56 3.18
2158 4981 2.738013 AAAGAAACGGAGGGAGTACG 57.262 50.000 0.00 0.00 0.00 3.67
2159 4982 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
2160 4983 5.279657 GGACTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
2161 4984 4.504514 GGACTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
2162 4985 4.001652 GGACTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
2163 4986 3.555586 CGGACTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
2164 4987 2.740447 CGGACTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
2165 4988 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
2166 4989 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
2167 4990 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
2168 4991 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
2169 4992 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
2170 4993 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
2171 4994 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
2172 4995 8.570068 AAACCTTATATGCGGACTAAAAAGAA 57.430 30.769 0.00 0.00 0.00 2.52
2173 4996 7.010738 CGAAACCTTATATGCGGACTAAAAAGA 59.989 37.037 0.00 0.00 0.00 2.52
2174 4997 7.123830 CGAAACCTTATATGCGGACTAAAAAG 58.876 38.462 0.00 0.00 0.00 2.27
2175 4998 6.594937 ACGAAACCTTATATGCGGACTAAAAA 59.405 34.615 0.00 0.00 0.00 1.94
2176 4999 6.108015 ACGAAACCTTATATGCGGACTAAAA 58.892 36.000 0.00 0.00 0.00 1.52
2177 5000 5.663456 ACGAAACCTTATATGCGGACTAAA 58.337 37.500 0.00 0.00 0.00 1.85
2178 5001 5.163530 TGACGAAACCTTATATGCGGACTAA 60.164 40.000 0.00 0.00 0.00 2.24
2179 5002 4.338964 TGACGAAACCTTATATGCGGACTA 59.661 41.667 0.00 0.00 0.00 2.59
2180 5003 3.131577 TGACGAAACCTTATATGCGGACT 59.868 43.478 0.00 0.00 0.00 3.85
2181 5004 3.450578 TGACGAAACCTTATATGCGGAC 58.549 45.455 0.00 0.00 0.00 4.79
2182 5005 3.804786 TGACGAAACCTTATATGCGGA 57.195 42.857 0.00 0.00 0.00 5.54
2183 5006 4.331717 ACTTTGACGAAACCTTATATGCGG 59.668 41.667 0.00 0.00 0.00 5.69
2184 5007 5.062934 TGACTTTGACGAAACCTTATATGCG 59.937 40.000 0.00 0.00 0.00 4.73
2185 5008 6.417191 TGACTTTGACGAAACCTTATATGC 57.583 37.500 0.00 0.00 0.00 3.14
2186 5009 8.504005 AGTTTGACTTTGACGAAACCTTATATG 58.496 33.333 0.00 0.00 0.00 1.78
2187 5010 8.617290 AGTTTGACTTTGACGAAACCTTATAT 57.383 30.769 0.00 0.00 0.00 0.86
2188 5011 8.441312 AAGTTTGACTTTGACGAAACCTTATA 57.559 30.769 0.00 0.00 34.11 0.98
2189 5012 6.937436 AGTTTGACTTTGACGAAACCTTAT 57.063 33.333 0.00 0.00 0.00 1.73
2190 5013 6.746745 AAGTTTGACTTTGACGAAACCTTA 57.253 33.333 0.00 0.00 34.11 2.69
2191 5014 5.638596 AAGTTTGACTTTGACGAAACCTT 57.361 34.783 0.00 0.00 34.11 3.50
2192 5015 5.638596 AAAGTTTGACTTTGACGAAACCT 57.361 34.783 5.34 0.00 45.83 3.50
2264 5087 9.923143 CATGGTGCATCTGATAATATTGATTTT 57.077 29.630 0.00 0.00 0.00 1.82
2265 5088 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
2266 5089 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
2267 5090 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
2268 5091 8.570488 GTTTCATGGTGCATCTGATAATATTGA 58.430 33.333 0.00 0.00 0.00 2.57
2269 5092 7.536281 CGTTTCATGGTGCATCTGATAATATTG 59.464 37.037 0.00 0.00 0.00 1.90
2270 5093 7.229306 ACGTTTCATGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
2271 5094 6.712095 ACGTTTCATGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
2272 5095 6.054941 ACGTTTCATGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
2273 5096 4.883585 ACGTTTCATGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
2274 5097 4.260985 ACGTTTCATGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
2275 5098 3.872696 ACGTTTCATGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
2276 5099 2.715046 ACGTTTCATGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
2277 5100 2.183478 ACGTTTCATGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
2278 5101 4.621068 AATACGTTTCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
2279 5102 5.640732 GAAAATACGTTTCATGGTGCATCT 58.359 37.500 0.00 0.00 44.42 2.90
2280 5103 5.932021 GAAAATACGTTTCATGGTGCATC 57.068 39.130 0.00 0.00 44.42 3.91
2347 5170 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
2348 5171 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
2359 5182 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
2360 5183 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
2361 5184 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
2362 5185 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
2363 5186 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
2364 5187 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
2365 5188 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
2366 5189 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
2370 5193 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
2371 5194 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
2372 5195 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
2373 5196 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
2374 5197 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
2375 5198 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
2376 5199 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
2377 5200 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
2378 5201 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
2379 5202 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
2380 5203 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
2381 5204 8.514330 TTTTTACTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
2382 5205 8.836413 TCTTTTTACTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
2386 5209 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
2387 5210 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
2388 5211 7.010738 TCCGTTTCTTTTTACTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
2389 5212 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
2390 5213 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
2391 5214 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
2392 5215 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
2393 5216 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
2394 5217 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
2395 5218 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
2396 5219 3.656559 TCCTCCGTTTCTTTTTACTCCG 58.343 45.455 0.00 0.00 0.00 4.63
2397 5220 5.061853 ACTTCCTCCGTTTCTTTTTACTCC 58.938 41.667 0.00 0.00 0.00 3.85
2398 5221 6.146837 GGTACTTCCTCCGTTTCTTTTTACTC 59.853 42.308 0.00 0.00 0.00 2.59
2399 5222 5.994054 GGTACTTCCTCCGTTTCTTTTTACT 59.006 40.000 0.00 0.00 0.00 2.24
2400 5223 5.759763 TGGTACTTCCTCCGTTTCTTTTTAC 59.240 40.000 0.00 0.00 37.07 2.01
2401 5224 5.927819 TGGTACTTCCTCCGTTTCTTTTTA 58.072 37.500 0.00 0.00 37.07 1.52
2402 5225 4.784177 TGGTACTTCCTCCGTTTCTTTTT 58.216 39.130 0.00 0.00 37.07 1.94
2403 5226 4.386711 CTGGTACTTCCTCCGTTTCTTTT 58.613 43.478 0.00 0.00 37.07 2.27
2404 5227 3.244457 CCTGGTACTTCCTCCGTTTCTTT 60.244 47.826 0.00 0.00 37.07 2.52
2405 5228 2.302157 CCTGGTACTTCCTCCGTTTCTT 59.698 50.000 0.00 0.00 37.07 2.52
2406 5229 1.900486 CCTGGTACTTCCTCCGTTTCT 59.100 52.381 0.00 0.00 37.07 2.52
2407 5230 1.675116 GCCTGGTACTTCCTCCGTTTC 60.675 57.143 0.00 0.00 37.07 2.78
2408 5231 0.323957 GCCTGGTACTTCCTCCGTTT 59.676 55.000 0.00 0.00 37.07 3.60
2409 5232 0.834687 TGCCTGGTACTTCCTCCGTT 60.835 55.000 0.00 0.00 37.07 4.44
2410 5233 0.834687 TTGCCTGGTACTTCCTCCGT 60.835 55.000 0.00 0.00 37.07 4.69
2411 5234 0.108138 CTTGCCTGGTACTTCCTCCG 60.108 60.000 0.00 0.00 37.07 4.63
2412 5235 0.253327 CCTTGCCTGGTACTTCCTCC 59.747 60.000 0.00 0.00 37.07 4.30
2413 5236 0.984995 ACCTTGCCTGGTACTTCCTC 59.015 55.000 0.00 0.00 38.79 3.71
2414 5237 1.446016 AACCTTGCCTGGTACTTCCT 58.554 50.000 0.00 0.00 39.83 3.36
2415 5238 1.886542 CAAACCTTGCCTGGTACTTCC 59.113 52.381 0.00 0.00 39.83 3.46
2416 5239 1.886542 CCAAACCTTGCCTGGTACTTC 59.113 52.381 0.00 0.00 39.83 3.01
2417 5240 1.497286 TCCAAACCTTGCCTGGTACTT 59.503 47.619 0.00 0.00 39.83 2.24
2418 5241 1.145571 TCCAAACCTTGCCTGGTACT 58.854 50.000 0.00 0.00 39.83 2.73
2423 5246 1.114722 TGCCTTCCAAACCTTGCCTG 61.115 55.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.