Multiple sequence alignment - TraesCS5A01G073400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G073400 chr5A 100.000 2878 0 0 1 2878 85359191 85356314 0.000000e+00 5315
1 TraesCS5A01G073400 chr5A 79.783 277 23 11 1774 2024 85357163 85356894 1.370000e-38 171
2 TraesCS5A01G073400 chr5A 79.856 278 21 13 2029 2298 85357418 85357168 1.370000e-38 171
3 TraesCS5A01G073400 chr5D 90.614 2035 98 45 880 2878 91873718 91871741 0.000000e+00 2614
4 TraesCS5A01G073400 chr5D 89.706 1360 69 27 699 2024 91656487 91655165 0.000000e+00 1670
5 TraesCS5A01G073400 chr5D 90.708 861 34 13 2021 2878 91655431 91654614 0.000000e+00 1105
6 TraesCS5A01G073400 chr5D 93.807 436 18 4 274 708 91659037 91658610 0.000000e+00 647
7 TraesCS5A01G073400 chr5D 93.807 436 18 4 274 708 91659558 91659131 0.000000e+00 647
8 TraesCS5A01G073400 chr5D 91.386 267 23 0 8 274 91725058 91724792 1.630000e-97 366
9 TraesCS5A01G073400 chr5D 93.133 233 11 2 652 881 91874781 91874551 1.280000e-88 337
10 TraesCS5A01G073400 chr5D 89.883 257 11 6 1774 2021 91872580 91872330 1.660000e-82 316
11 TraesCS5A01G073400 chr5D 84.946 279 20 9 2021 2295 91872849 91872589 2.200000e-66 263
12 TraesCS5A01G073400 chr5B 88.069 2154 139 55 750 2864 96911465 96909391 0.000000e+00 2446
13 TraesCS5A01G073400 chr5B 93.254 252 10 4 1774 2024 96910190 96909945 5.860000e-97 364
14 TraesCS5A01G073400 chr5B 87.611 113 10 4 650 758 96911745 96911633 8.370000e-26 128
15 TraesCS5A01G073400 chr6D 91.765 85 5 2 1921 2003 223296276 223296192 1.810000e-22 117
16 TraesCS5A01G073400 chr7B 89.412 85 7 2 1921 2003 441436615 441436531 3.920000e-19 106
17 TraesCS5A01G073400 chr2B 90.244 82 6 2 1921 2000 556435191 556435272 3.920000e-19 106
18 TraesCS5A01G073400 chr2A 89.024 82 7 2 1921 2000 330486041 330486122 1.820000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G073400 chr5A 85356314 85359191 2877 True 1885.666667 5315 86.546333 1 2878 3 chr5A.!!$R1 2877
1 TraesCS5A01G073400 chr5D 91654614 91659558 4944 True 1017.250000 1670 92.007000 274 2878 4 chr5D.!!$R2 2604
2 TraesCS5A01G073400 chr5D 91871741 91874781 3040 True 882.500000 2614 89.644000 652 2878 4 chr5D.!!$R3 2226
3 TraesCS5A01G073400 chr5B 96909391 96911745 2354 True 979.333333 2446 89.644667 650 2864 3 chr5B.!!$R1 2214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.031616 AAAGTGTTGGGCCCCTTGAA 60.032 50.0 22.27 3.06 0.00 2.69 F
577 578 0.109597 CACATTGTGCTCCGGCTTTC 60.110 55.0 3.43 0.00 39.59 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 5337 0.247814 CGCAAGACATGTTCCATCGC 60.248 55.0 0.00 0.00 43.02 4.58 R
2485 6216 0.378257 AAAGCAAGCTGTGTGACACG 59.622 50.0 11.51 7.18 37.14 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.257353 CTTGTTTGCTTCCCTCCCG 58.743 57.895 0.00 0.00 0.00 5.14
19 20 0.537371 CTTGTTTGCTTCCCTCCCGT 60.537 55.000 0.00 0.00 0.00 5.28
20 21 0.821711 TTGTTTGCTTCCCTCCCGTG 60.822 55.000 0.00 0.00 0.00 4.94
21 22 1.072505 GTTTGCTTCCCTCCCGTGA 59.927 57.895 0.00 0.00 0.00 4.35
22 23 1.072505 TTTGCTTCCCTCCCGTGAC 59.927 57.895 0.00 0.00 0.00 3.67
23 24 2.406002 TTTGCTTCCCTCCCGTGACC 62.406 60.000 0.00 0.00 0.00 4.02
24 25 3.003763 GCTTCCCTCCCGTGACCT 61.004 66.667 0.00 0.00 0.00 3.85
25 26 2.982130 CTTCCCTCCCGTGACCTG 59.018 66.667 0.00 0.00 0.00 4.00
26 27 3.316573 CTTCCCTCCCGTGACCTGC 62.317 68.421 0.00 0.00 0.00 4.85
27 28 4.631740 TCCCTCCCGTGACCTGCA 62.632 66.667 0.00 0.00 0.00 4.41
28 29 3.402681 CCCTCCCGTGACCTGCAT 61.403 66.667 0.00 0.00 0.00 3.96
29 30 2.063979 CCCTCCCGTGACCTGCATA 61.064 63.158 0.00 0.00 0.00 3.14
30 31 1.410850 CCCTCCCGTGACCTGCATAT 61.411 60.000 0.00 0.00 0.00 1.78
31 32 0.250038 CCTCCCGTGACCTGCATATG 60.250 60.000 0.00 0.00 0.00 1.78
32 33 0.752658 CTCCCGTGACCTGCATATGA 59.247 55.000 6.97 0.00 0.00 2.15
33 34 1.138859 CTCCCGTGACCTGCATATGAA 59.861 52.381 6.97 0.00 0.00 2.57
34 35 1.557371 TCCCGTGACCTGCATATGAAA 59.443 47.619 6.97 0.00 0.00 2.69
35 36 1.942657 CCCGTGACCTGCATATGAAAG 59.057 52.381 6.97 2.85 0.00 2.62
36 37 2.632377 CCGTGACCTGCATATGAAAGT 58.368 47.619 6.97 0.00 0.00 2.66
37 38 2.352651 CCGTGACCTGCATATGAAAGTG 59.647 50.000 6.97 0.73 0.00 3.16
38 39 3.002791 CGTGACCTGCATATGAAAGTGT 58.997 45.455 6.97 3.73 0.00 3.55
39 40 3.436704 CGTGACCTGCATATGAAAGTGTT 59.563 43.478 6.97 0.00 0.00 3.32
40 41 4.669965 CGTGACCTGCATATGAAAGTGTTG 60.670 45.833 6.97 0.00 0.00 3.33
41 42 3.758023 TGACCTGCATATGAAAGTGTTGG 59.242 43.478 6.97 0.00 0.00 3.77
42 43 3.091545 ACCTGCATATGAAAGTGTTGGG 58.908 45.455 6.97 0.00 0.00 4.12
43 44 2.159198 CCTGCATATGAAAGTGTTGGGC 60.159 50.000 6.97 0.00 0.00 5.36
44 45 1.824230 TGCATATGAAAGTGTTGGGCC 59.176 47.619 6.97 0.00 0.00 5.80
45 46 1.136891 GCATATGAAAGTGTTGGGCCC 59.863 52.381 17.59 17.59 0.00 5.80
46 47 1.756538 CATATGAAAGTGTTGGGCCCC 59.243 52.381 22.27 4.91 0.00 5.80
47 48 1.080638 TATGAAAGTGTTGGGCCCCT 58.919 50.000 22.27 5.74 0.00 4.79
48 49 0.190815 ATGAAAGTGTTGGGCCCCTT 59.809 50.000 22.27 12.70 0.00 3.95
49 50 0.758685 TGAAAGTGTTGGGCCCCTTG 60.759 55.000 22.27 0.00 0.00 3.61
50 51 0.469144 GAAAGTGTTGGGCCCCTTGA 60.469 55.000 22.27 0.00 0.00 3.02
51 52 0.031616 AAAGTGTTGGGCCCCTTGAA 60.032 50.000 22.27 3.06 0.00 2.69
52 53 0.469892 AAGTGTTGGGCCCCTTGAAG 60.470 55.000 22.27 0.00 0.00 3.02
53 54 2.203625 TGTTGGGCCCCTTGAAGC 60.204 61.111 22.27 1.94 0.00 3.86
54 55 3.373565 GTTGGGCCCCTTGAAGCG 61.374 66.667 22.27 0.00 0.00 4.68
55 56 3.897122 TTGGGCCCCTTGAAGCGT 61.897 61.111 22.27 0.00 0.00 5.07
56 57 2.530672 TTGGGCCCCTTGAAGCGTA 61.531 57.895 22.27 0.00 0.00 4.42
57 58 2.070399 TTGGGCCCCTTGAAGCGTAA 62.070 55.000 22.27 0.00 0.00 3.18
58 59 1.303806 GGGCCCCTTGAAGCGTAAA 60.304 57.895 12.23 0.00 0.00 2.01
59 60 0.896479 GGGCCCCTTGAAGCGTAAAA 60.896 55.000 12.23 0.00 0.00 1.52
60 61 1.182667 GGCCCCTTGAAGCGTAAAAT 58.817 50.000 0.00 0.00 0.00 1.82
61 62 1.134367 GGCCCCTTGAAGCGTAAAATC 59.866 52.381 0.00 0.00 0.00 2.17
62 63 2.092323 GCCCCTTGAAGCGTAAAATCT 58.908 47.619 0.00 0.00 0.00 2.40
63 64 2.492088 GCCCCTTGAAGCGTAAAATCTT 59.508 45.455 0.00 0.00 0.00 2.40
64 65 3.056821 GCCCCTTGAAGCGTAAAATCTTT 60.057 43.478 0.00 0.00 0.00 2.52
65 66 4.485163 CCCCTTGAAGCGTAAAATCTTTG 58.515 43.478 0.00 0.00 0.00 2.77
66 67 4.022329 CCCCTTGAAGCGTAAAATCTTTGT 60.022 41.667 0.00 0.00 0.00 2.83
67 68 5.508994 CCCCTTGAAGCGTAAAATCTTTGTT 60.509 40.000 0.00 0.00 0.00 2.83
68 69 5.983118 CCCTTGAAGCGTAAAATCTTTGTTT 59.017 36.000 0.00 0.00 0.00 2.83
69 70 6.074356 CCCTTGAAGCGTAAAATCTTTGTTTG 60.074 38.462 0.00 0.00 0.00 2.93
70 71 6.074356 CCTTGAAGCGTAAAATCTTTGTTTGG 60.074 38.462 0.00 0.00 0.00 3.28
71 72 5.897050 TGAAGCGTAAAATCTTTGTTTGGT 58.103 33.333 0.00 0.00 0.00 3.67
72 73 5.974751 TGAAGCGTAAAATCTTTGTTTGGTC 59.025 36.000 0.00 0.00 0.00 4.02
73 74 4.533222 AGCGTAAAATCTTTGTTTGGTCG 58.467 39.130 0.00 0.00 0.00 4.79
74 75 3.666797 GCGTAAAATCTTTGTTTGGTCGG 59.333 43.478 0.00 0.00 0.00 4.79
75 76 4.790444 GCGTAAAATCTTTGTTTGGTCGGT 60.790 41.667 0.00 0.00 0.00 4.69
76 77 4.907582 CGTAAAATCTTTGTTTGGTCGGTC 59.092 41.667 0.00 0.00 0.00 4.79
77 78 3.619233 AAATCTTTGTTTGGTCGGTCG 57.381 42.857 0.00 0.00 0.00 4.79
78 79 2.249844 ATCTTTGTTTGGTCGGTCGT 57.750 45.000 0.00 0.00 0.00 4.34
79 80 1.292061 TCTTTGTTTGGTCGGTCGTG 58.708 50.000 0.00 0.00 0.00 4.35
80 81 0.316689 CTTTGTTTGGTCGGTCGTGC 60.317 55.000 0.00 0.00 0.00 5.34
81 82 1.025113 TTTGTTTGGTCGGTCGTGCA 61.025 50.000 0.00 0.00 0.00 4.57
82 83 1.025113 TTGTTTGGTCGGTCGTGCAA 61.025 50.000 0.00 0.00 0.00 4.08
83 84 0.816018 TGTTTGGTCGGTCGTGCAAT 60.816 50.000 0.00 0.00 0.00 3.56
84 85 1.149987 GTTTGGTCGGTCGTGCAATA 58.850 50.000 0.00 0.00 0.00 1.90
85 86 1.735571 GTTTGGTCGGTCGTGCAATAT 59.264 47.619 0.00 0.00 0.00 1.28
86 87 1.647346 TTGGTCGGTCGTGCAATATC 58.353 50.000 0.00 0.00 0.00 1.63
87 88 0.533032 TGGTCGGTCGTGCAATATCA 59.467 50.000 0.00 0.00 0.00 2.15
88 89 1.209128 GGTCGGTCGTGCAATATCAG 58.791 55.000 0.00 0.00 0.00 2.90
89 90 1.202371 GGTCGGTCGTGCAATATCAGA 60.202 52.381 0.00 0.00 0.00 3.27
90 91 2.545952 GGTCGGTCGTGCAATATCAGAT 60.546 50.000 0.00 0.00 0.00 2.90
91 92 3.123804 GTCGGTCGTGCAATATCAGATT 58.876 45.455 0.00 0.00 0.00 2.40
92 93 3.555956 GTCGGTCGTGCAATATCAGATTT 59.444 43.478 0.00 0.00 0.00 2.17
93 94 3.555547 TCGGTCGTGCAATATCAGATTTG 59.444 43.478 0.00 0.00 0.00 2.32
94 95 3.303329 CGGTCGTGCAATATCAGATTTGG 60.303 47.826 0.00 0.00 0.00 3.28
95 96 3.876914 GGTCGTGCAATATCAGATTTGGA 59.123 43.478 0.00 0.00 0.00 3.53
96 97 4.260784 GGTCGTGCAATATCAGATTTGGAC 60.261 45.833 14.48 14.48 39.80 4.02
97 98 4.572389 GTCGTGCAATATCAGATTTGGACT 59.428 41.667 18.61 0.00 40.67 3.85
98 99 5.065218 GTCGTGCAATATCAGATTTGGACTT 59.935 40.000 18.61 0.00 40.67 3.01
99 100 5.294306 TCGTGCAATATCAGATTTGGACTTC 59.706 40.000 18.61 3.93 40.67 3.01
100 101 5.295292 CGTGCAATATCAGATTTGGACTTCT 59.705 40.000 18.61 0.00 40.67 2.85
101 102 6.479990 CGTGCAATATCAGATTTGGACTTCTA 59.520 38.462 18.61 0.00 40.67 2.10
102 103 7.011389 CGTGCAATATCAGATTTGGACTTCTAA 59.989 37.037 18.61 0.00 40.67 2.10
103 104 8.677300 GTGCAATATCAGATTTGGACTTCTAAA 58.323 33.333 16.01 0.00 39.98 1.85
104 105 9.412460 TGCAATATCAGATTTGGACTTCTAAAT 57.588 29.630 0.55 0.55 39.30 1.40
105 106 9.674824 GCAATATCAGATTTGGACTTCTAAATG 57.325 33.333 5.39 0.00 37.20 2.32
108 109 6.968131 TCAGATTTGGACTTCTAAATGTCG 57.032 37.500 5.39 0.00 37.20 4.35
109 110 6.464222 TCAGATTTGGACTTCTAAATGTCGT 58.536 36.000 5.39 0.00 37.20 4.34
110 111 6.368791 TCAGATTTGGACTTCTAAATGTCGTG 59.631 38.462 5.39 0.00 37.20 4.35
111 112 4.742438 TTTGGACTTCTAAATGTCGTGC 57.258 40.909 0.00 0.00 34.31 5.34
112 113 3.394674 TGGACTTCTAAATGTCGTGCA 57.605 42.857 0.00 0.00 34.31 4.57
113 114 3.937814 TGGACTTCTAAATGTCGTGCAT 58.062 40.909 0.00 0.00 40.03 3.96
114 115 3.684305 TGGACTTCTAAATGTCGTGCATG 59.316 43.478 0.00 0.00 37.96 4.06
115 116 3.684788 GGACTTCTAAATGTCGTGCATGT 59.315 43.478 5.68 0.00 37.96 3.21
116 117 4.201724 GGACTTCTAAATGTCGTGCATGTC 60.202 45.833 5.68 0.33 37.96 3.06
117 118 3.367932 ACTTCTAAATGTCGTGCATGTCG 59.632 43.478 5.68 0.00 37.96 4.35
118 119 1.658596 TCTAAATGTCGTGCATGTCGC 59.341 47.619 5.68 0.00 37.96 5.19
124 125 3.112075 CGTGCATGTCGCGGTCTT 61.112 61.111 6.13 0.00 46.97 3.01
125 126 2.667318 CGTGCATGTCGCGGTCTTT 61.667 57.895 6.13 0.00 46.97 2.52
126 127 1.348538 CGTGCATGTCGCGGTCTTTA 61.349 55.000 6.13 0.00 46.97 1.85
127 128 0.370273 GTGCATGTCGCGGTCTTTAG 59.630 55.000 6.13 0.00 46.97 1.85
128 129 0.739462 TGCATGTCGCGGTCTTTAGG 60.739 55.000 6.13 0.00 46.97 2.69
129 130 0.459585 GCATGTCGCGGTCTTTAGGA 60.460 55.000 6.13 0.00 0.00 2.94
130 131 1.278238 CATGTCGCGGTCTTTAGGAC 58.722 55.000 6.13 0.00 43.79 3.85
131 132 0.892755 ATGTCGCGGTCTTTAGGACA 59.107 50.000 6.13 0.00 46.16 4.02
132 133 0.892755 TGTCGCGGTCTTTAGGACAT 59.107 50.000 6.13 0.00 46.16 3.06
133 134 1.278238 GTCGCGGTCTTTAGGACATG 58.722 55.000 6.13 0.00 46.16 3.21
134 135 0.459585 TCGCGGTCTTTAGGACATGC 60.460 55.000 6.13 0.00 46.16 4.06
135 136 1.429148 CGCGGTCTTTAGGACATGCC 61.429 60.000 0.00 0.00 46.16 4.40
136 137 0.392461 GCGGTCTTTAGGACATGCCA 60.392 55.000 8.58 0.00 46.16 4.92
137 138 1.747206 GCGGTCTTTAGGACATGCCAT 60.747 52.381 8.58 0.00 46.16 4.40
138 139 2.213499 CGGTCTTTAGGACATGCCATC 58.787 52.381 8.58 0.00 46.16 3.51
139 140 2.158900 CGGTCTTTAGGACATGCCATCT 60.159 50.000 8.58 0.00 46.16 2.90
140 141 3.471680 GGTCTTTAGGACATGCCATCTC 58.528 50.000 8.58 0.00 46.16 2.75
141 142 3.471680 GTCTTTAGGACATGCCATCTCC 58.528 50.000 8.58 0.00 43.94 3.71
142 143 3.114606 TCTTTAGGACATGCCATCTCCA 58.885 45.455 1.65 0.00 40.02 3.86
143 144 3.718434 TCTTTAGGACATGCCATCTCCAT 59.282 43.478 1.65 0.00 40.02 3.41
144 145 3.497103 TTAGGACATGCCATCTCCATG 57.503 47.619 1.65 0.00 44.28 3.66
154 155 7.223260 CATGCCATCTCCATGTTATATTTGT 57.777 36.000 0.00 0.00 36.26 2.83
155 156 6.882610 TGCCATCTCCATGTTATATTTGTC 57.117 37.500 0.00 0.00 0.00 3.18
156 157 6.604171 TGCCATCTCCATGTTATATTTGTCT 58.396 36.000 0.00 0.00 0.00 3.41
157 158 7.744733 TGCCATCTCCATGTTATATTTGTCTA 58.255 34.615 0.00 0.00 0.00 2.59
158 159 7.661437 TGCCATCTCCATGTTATATTTGTCTAC 59.339 37.037 0.00 0.00 0.00 2.59
159 160 7.661437 GCCATCTCCATGTTATATTTGTCTACA 59.339 37.037 0.00 0.00 0.00 2.74
160 161 9.730705 CCATCTCCATGTTATATTTGTCTACAT 57.269 33.333 0.00 0.00 0.00 2.29
163 164 9.987272 TCTCCATGTTATATTTGTCTACATGAG 57.013 33.333 13.41 9.51 45.46 2.90
164 165 9.212641 CTCCATGTTATATTTGTCTACATGAGG 57.787 37.037 13.41 0.66 45.46 3.86
165 166 8.933653 TCCATGTTATATTTGTCTACATGAGGA 58.066 33.333 13.41 2.75 45.46 3.71
166 167 9.212641 CCATGTTATATTTGTCTACATGAGGAG 57.787 37.037 13.41 0.00 45.46 3.69
167 168 9.212641 CATGTTATATTTGTCTACATGAGGAGG 57.787 37.037 0.00 0.00 45.46 4.30
168 169 7.735917 TGTTATATTTGTCTACATGAGGAGGG 58.264 38.462 0.00 0.00 0.00 4.30
169 170 7.347222 TGTTATATTTGTCTACATGAGGAGGGT 59.653 37.037 0.00 0.00 0.00 4.34
170 171 8.867097 GTTATATTTGTCTACATGAGGAGGGTA 58.133 37.037 0.00 0.00 0.00 3.69
171 172 7.931015 ATATTTGTCTACATGAGGAGGGTAA 57.069 36.000 0.00 0.00 0.00 2.85
172 173 5.416271 TTTGTCTACATGAGGAGGGTAAC 57.584 43.478 0.00 0.00 0.00 2.50
173 174 3.021695 TGTCTACATGAGGAGGGTAACG 58.978 50.000 0.00 0.00 37.60 3.18
174 175 2.029623 TCTACATGAGGAGGGTAACGC 58.970 52.381 0.00 0.00 37.60 4.84
175 176 0.742505 TACATGAGGAGGGTAACGCG 59.257 55.000 3.53 3.53 37.60 6.01
176 177 1.227263 CATGAGGAGGGTAACGCGG 60.227 63.158 12.47 0.00 37.60 6.46
177 178 1.380785 ATGAGGAGGGTAACGCGGA 60.381 57.895 12.47 0.00 37.60 5.54
178 179 1.392710 ATGAGGAGGGTAACGCGGAG 61.393 60.000 12.47 0.00 37.60 4.63
192 193 4.899239 GGAGCACATCCTCCGGCG 62.899 72.222 0.00 0.00 45.64 6.46
193 194 3.838271 GAGCACATCCTCCGGCGA 61.838 66.667 9.30 0.00 0.00 5.54
194 195 3.157217 GAGCACATCCTCCGGCGAT 62.157 63.158 9.30 0.00 0.00 4.58
195 196 2.969238 GCACATCCTCCGGCGATG 60.969 66.667 22.68 22.68 42.37 3.84
197 198 1.153369 CACATCCTCCGGCGATGTT 60.153 57.895 25.73 13.85 46.36 2.71
198 199 1.153369 ACATCCTCCGGCGATGTTG 60.153 57.895 23.72 9.17 46.36 3.33
199 200 2.203070 ATCCTCCGGCGATGTTGC 60.203 61.111 9.30 0.00 0.00 4.17
200 201 2.735772 ATCCTCCGGCGATGTTGCT 61.736 57.895 9.30 0.00 34.52 3.91
201 202 1.399744 ATCCTCCGGCGATGTTGCTA 61.400 55.000 9.30 0.00 34.52 3.49
202 203 1.069765 CCTCCGGCGATGTTGCTAT 59.930 57.895 9.30 0.00 34.52 2.97
203 204 1.224069 CCTCCGGCGATGTTGCTATG 61.224 60.000 9.30 0.00 34.52 2.23
204 205 0.530650 CTCCGGCGATGTTGCTATGT 60.531 55.000 9.30 0.00 34.52 2.29
205 206 0.809636 TCCGGCGATGTTGCTATGTG 60.810 55.000 9.30 0.00 34.52 3.21
206 207 0.809636 CCGGCGATGTTGCTATGTGA 60.810 55.000 9.30 0.00 34.52 3.58
207 208 0.578683 CGGCGATGTTGCTATGTGAG 59.421 55.000 0.00 0.00 34.52 3.51
208 209 0.940126 GGCGATGTTGCTATGTGAGG 59.060 55.000 0.00 0.00 34.52 3.86
209 210 0.940126 GCGATGTTGCTATGTGAGGG 59.060 55.000 0.00 0.00 0.00 4.30
210 211 1.473257 GCGATGTTGCTATGTGAGGGA 60.473 52.381 0.00 0.00 0.00 4.20
211 212 2.477825 CGATGTTGCTATGTGAGGGAG 58.522 52.381 0.00 0.00 0.00 4.30
212 213 2.804572 CGATGTTGCTATGTGAGGGAGG 60.805 54.545 0.00 0.00 0.00 4.30
213 214 1.656587 TGTTGCTATGTGAGGGAGGT 58.343 50.000 0.00 0.00 0.00 3.85
214 215 1.278985 TGTTGCTATGTGAGGGAGGTG 59.721 52.381 0.00 0.00 0.00 4.00
215 216 1.279271 GTTGCTATGTGAGGGAGGTGT 59.721 52.381 0.00 0.00 0.00 4.16
216 217 0.904649 TGCTATGTGAGGGAGGTGTG 59.095 55.000 0.00 0.00 0.00 3.82
217 218 0.179000 GCTATGTGAGGGAGGTGTGG 59.821 60.000 0.00 0.00 0.00 4.17
218 219 0.179000 CTATGTGAGGGAGGTGTGGC 59.821 60.000 0.00 0.00 0.00 5.01
219 220 0.546507 TATGTGAGGGAGGTGTGGCA 60.547 55.000 0.00 0.00 0.00 4.92
220 221 1.210204 ATGTGAGGGAGGTGTGGCAT 61.210 55.000 0.00 0.00 0.00 4.40
221 222 1.380302 GTGAGGGAGGTGTGGCATT 59.620 57.895 0.00 0.00 0.00 3.56
222 223 0.962356 GTGAGGGAGGTGTGGCATTG 60.962 60.000 0.00 0.00 0.00 2.82
223 224 1.379044 GAGGGAGGTGTGGCATTGG 60.379 63.158 0.00 0.00 0.00 3.16
224 225 1.852157 AGGGAGGTGTGGCATTGGA 60.852 57.895 0.00 0.00 0.00 3.53
225 226 1.678970 GGGAGGTGTGGCATTGGAC 60.679 63.158 0.00 0.00 0.00 4.02
226 227 1.678970 GGAGGTGTGGCATTGGACC 60.679 63.158 0.00 0.00 0.00 4.46
227 228 1.380302 GAGGTGTGGCATTGGACCT 59.620 57.895 9.43 9.43 41.70 3.85
228 229 0.251341 GAGGTGTGGCATTGGACCTT 60.251 55.000 10.59 0.00 39.00 3.50
229 230 0.540365 AGGTGTGGCATTGGACCTTG 60.540 55.000 0.00 0.00 35.12 3.61
230 231 1.535204 GGTGTGGCATTGGACCTTGG 61.535 60.000 0.00 0.00 0.00 3.61
231 232 0.539438 GTGTGGCATTGGACCTTGGA 60.539 55.000 0.00 0.00 0.00 3.53
232 233 0.409092 TGTGGCATTGGACCTTGGAT 59.591 50.000 0.00 0.00 0.00 3.41
233 234 1.106285 GTGGCATTGGACCTTGGATC 58.894 55.000 0.00 0.00 0.00 3.36
234 235 0.703488 TGGCATTGGACCTTGGATCA 59.297 50.000 0.00 0.00 0.00 2.92
235 236 1.106285 GGCATTGGACCTTGGATCAC 58.894 55.000 0.00 0.00 0.00 3.06
236 237 1.341383 GGCATTGGACCTTGGATCACT 60.341 52.381 0.00 0.00 0.00 3.41
237 238 2.450476 GCATTGGACCTTGGATCACTT 58.550 47.619 0.00 0.00 0.00 3.16
238 239 2.827921 GCATTGGACCTTGGATCACTTT 59.172 45.455 0.00 0.00 0.00 2.66
239 240 4.016444 GCATTGGACCTTGGATCACTTTA 58.984 43.478 0.00 0.00 0.00 1.85
240 241 4.096984 GCATTGGACCTTGGATCACTTTAG 59.903 45.833 0.00 0.00 0.00 1.85
241 242 4.301072 TTGGACCTTGGATCACTTTAGG 57.699 45.455 0.00 0.00 0.00 2.69
242 243 3.256704 TGGACCTTGGATCACTTTAGGT 58.743 45.455 0.00 0.00 41.74 3.08
243 244 3.655777 TGGACCTTGGATCACTTTAGGTT 59.344 43.478 0.00 0.00 39.25 3.50
244 245 4.010349 GGACCTTGGATCACTTTAGGTTG 58.990 47.826 0.00 0.00 39.25 3.77
245 246 4.506802 GGACCTTGGATCACTTTAGGTTGT 60.507 45.833 0.00 0.00 39.25 3.32
246 247 5.280317 GGACCTTGGATCACTTTAGGTTGTA 60.280 44.000 0.00 0.00 39.25 2.41
247 248 6.195600 ACCTTGGATCACTTTAGGTTGTAA 57.804 37.500 0.00 0.00 35.77 2.41
248 249 6.002082 ACCTTGGATCACTTTAGGTTGTAAC 58.998 40.000 0.00 0.00 35.77 2.50
249 250 6.183361 ACCTTGGATCACTTTAGGTTGTAACT 60.183 38.462 0.00 0.00 35.77 2.24
250 251 7.016858 ACCTTGGATCACTTTAGGTTGTAACTA 59.983 37.037 0.00 0.00 35.77 2.24
251 252 7.333672 CCTTGGATCACTTTAGGTTGTAACTAC 59.666 40.741 0.00 0.00 0.00 2.73
252 253 7.549147 TGGATCACTTTAGGTTGTAACTACT 57.451 36.000 0.00 0.00 0.00 2.57
253 254 7.383687 TGGATCACTTTAGGTTGTAACTACTG 58.616 38.462 0.00 0.00 0.00 2.74
254 255 7.233962 TGGATCACTTTAGGTTGTAACTACTGA 59.766 37.037 0.00 0.00 0.00 3.41
255 256 7.760340 GGATCACTTTAGGTTGTAACTACTGAG 59.240 40.741 0.00 0.00 0.00 3.35
256 257 6.989659 TCACTTTAGGTTGTAACTACTGAGG 58.010 40.000 0.00 0.00 0.00 3.86
257 258 5.638234 CACTTTAGGTTGTAACTACTGAGGC 59.362 44.000 0.00 0.00 0.00 4.70
258 259 4.813750 TTAGGTTGTAACTACTGAGGCC 57.186 45.455 0.00 0.00 0.00 5.19
259 260 2.903926 AGGTTGTAACTACTGAGGCCT 58.096 47.619 3.86 3.86 0.00 5.19
260 261 4.057063 AGGTTGTAACTACTGAGGCCTA 57.943 45.455 4.42 0.00 0.00 3.93
261 262 3.768215 AGGTTGTAACTACTGAGGCCTAC 59.232 47.826 4.42 0.00 0.00 3.18
262 263 3.512724 GGTTGTAACTACTGAGGCCTACA 59.487 47.826 4.42 0.00 0.00 2.74
263 264 4.161754 GGTTGTAACTACTGAGGCCTACAT 59.838 45.833 4.42 0.00 0.00 2.29
264 265 5.349809 GTTGTAACTACTGAGGCCTACATC 58.650 45.833 4.42 0.00 0.00 3.06
265 266 3.958798 TGTAACTACTGAGGCCTACATCC 59.041 47.826 4.42 0.00 0.00 3.51
266 267 3.406512 AACTACTGAGGCCTACATCCT 57.593 47.619 4.42 0.00 36.46 3.24
271 272 2.346597 GAGGCCTACATCCTCTCGG 58.653 63.158 4.42 0.00 45.13 4.63
272 273 0.178987 GAGGCCTACATCCTCTCGGA 60.179 60.000 4.42 0.00 45.13 4.55
372 373 1.202099 TGACGGTATGGCCCCTTTGA 61.202 55.000 0.00 0.00 0.00 2.69
376 377 1.615919 CGGTATGGCCCCTTTGAAAGT 60.616 52.381 0.00 0.00 0.00 2.66
378 379 3.288092 GGTATGGCCCCTTTGAAAGTAG 58.712 50.000 0.00 0.00 0.00 2.57
387 388 4.065789 CCCTTTGAAAGTAGAGAAACGCT 58.934 43.478 4.02 0.00 0.00 5.07
401 402 5.012328 AGAAACGCTAGAGTATTTGGGAG 57.988 43.478 0.00 0.00 0.00 4.30
406 407 3.886505 CGCTAGAGTATTTGGGAGAGTCT 59.113 47.826 0.00 0.00 0.00 3.24
408 409 4.038642 GCTAGAGTATTTGGGAGAGTCTGG 59.961 50.000 0.00 0.00 0.00 3.86
409 410 4.067944 AGAGTATTTGGGAGAGTCTGGT 57.932 45.455 0.00 0.00 0.00 4.00
507 508 4.739046 ACTTCAACATTTTGCGAGAGAG 57.261 40.909 0.00 0.00 32.17 3.20
519 520 3.816994 TGCGAGAGAGTAGGCTATTGTA 58.183 45.455 0.00 0.00 0.00 2.41
523 524 6.659668 TGCGAGAGAGTAGGCTATTGTATATT 59.340 38.462 0.00 0.00 0.00 1.28
524 525 6.970043 GCGAGAGAGTAGGCTATTGTATATTG 59.030 42.308 0.00 0.00 0.00 1.90
525 526 7.362229 GCGAGAGAGTAGGCTATTGTATATTGT 60.362 40.741 0.00 0.00 0.00 2.71
526 527 7.965655 CGAGAGAGTAGGCTATTGTATATTGTG 59.034 40.741 0.00 0.00 0.00 3.33
527 528 8.713708 AGAGAGTAGGCTATTGTATATTGTGT 57.286 34.615 0.00 0.00 0.00 3.72
561 562 4.400529 TGTGCTAGAGTCTTTGTTCACA 57.599 40.909 0.00 3.52 0.00 3.58
571 572 2.290367 TCTTTGTTCACATTGTGCTCCG 59.710 45.455 12.04 0.00 32.98 4.63
577 578 0.109597 CACATTGTGCTCCGGCTTTC 60.110 55.000 3.43 0.00 39.59 2.62
600 601 7.448748 TCTGTAAACTTTTATTGCTCCCTTC 57.551 36.000 0.00 0.00 0.00 3.46
708 1229 1.338655 GAATCCGACTCTACTCCTGGC 59.661 57.143 0.00 0.00 0.00 4.85
729 3382 1.477558 CCTACCTGGATGGAATGTGGC 60.478 57.143 0.00 0.00 39.71 5.01
781 3606 2.614057 GACCTCATTAATTCCTGTGCGG 59.386 50.000 0.00 0.00 0.00 5.69
947 4624 1.227973 CCTATTTCAGAGCCCGCCC 60.228 63.158 0.00 0.00 0.00 6.13
1194 4880 2.261586 CCCATCGAGATCGCGGAGA 61.262 63.158 18.89 0.00 39.60 3.71
1406 5094 4.396854 GCCGAAGAAGCGTACGAT 57.603 55.556 21.65 10.81 0.00 3.73
1463 5151 1.226542 CTGCCTGCTGGACATCCAT 59.773 57.895 14.77 0.00 46.46 3.41
1515 5203 3.127352 GAGCGCCTCAGGACCTACG 62.127 68.421 2.29 0.00 0.00 3.51
1536 5224 1.743252 CTCCTCGCCAAGGTGAAGC 60.743 63.158 3.69 0.00 46.32 3.86
1591 5279 3.151022 CCTCGAGGACCTGAGGGC 61.151 72.222 28.21 0.00 46.55 5.19
1619 5307 2.371923 CGTGCGTGCGACTTGATCA 61.372 57.895 0.00 0.00 0.00 2.92
1645 5335 3.739300 GCTACTTCTTGTGTTCTTGCGTA 59.261 43.478 0.00 0.00 0.00 4.42
1646 5336 4.210537 GCTACTTCTTGTGTTCTTGCGTAA 59.789 41.667 0.00 0.00 0.00 3.18
1647 5337 4.795970 ACTTCTTGTGTTCTTGCGTAAG 57.204 40.909 6.95 6.95 43.44 2.34
1706 5398 0.090843 GTCTTCTTGCGTACGCGTTC 59.909 55.000 32.65 12.48 45.51 3.95
1717 5409 1.717645 GTACGCGTTCAAACTGTCGAT 59.282 47.619 20.78 0.00 0.00 3.59
1718 5410 2.054687 ACGCGTTCAAACTGTCGATA 57.945 45.000 5.58 0.00 0.00 2.92
1760 5455 1.462283 CTGGATTCTATGAATGCCGCG 59.538 52.381 0.00 0.00 0.00 6.46
1786 5481 4.877251 AGTTTTGTTCGTACTGCTGGTTTA 59.123 37.500 0.00 0.00 0.00 2.01
1852 5547 6.775142 TGTGAATCCAAGATTTCCAAACAGTA 59.225 34.615 0.00 0.00 0.00 2.74
1853 5548 7.084486 GTGAATCCAAGATTTCCAAACAGTAC 58.916 38.462 0.00 0.00 0.00 2.73
1854 5549 5.880054 ATCCAAGATTTCCAAACAGTACG 57.120 39.130 0.00 0.00 0.00 3.67
1855 5550 4.710324 TCCAAGATTTCCAAACAGTACGT 58.290 39.130 0.00 0.00 0.00 3.57
1856 5551 4.513692 TCCAAGATTTCCAAACAGTACGTG 59.486 41.667 0.00 0.00 0.00 4.49
1878 5573 8.024285 ACGTGTAATATAATGGTTTTGTTGGTG 58.976 33.333 0.00 0.00 0.00 4.17
1883 5578 2.837532 ATGGTTTTGTTGGTGGATGC 57.162 45.000 0.00 0.00 0.00 3.91
1973 5678 4.677584 AGAACAGAGAGTTGCTATTAGCG 58.322 43.478 10.94 0.00 46.26 4.26
2043 5749 4.900635 AGTTTTGTACTGCTGGTTTCTG 57.099 40.909 0.00 0.00 35.19 3.02
2146 5853 5.048434 TGTTGGTTGATTGATGACGCATTTA 60.048 36.000 0.00 0.00 0.00 1.40
2179 5886 4.320421 GCATTATCATGACGCATTTGGCTA 60.320 41.667 0.00 0.00 34.39 3.93
2180 5887 5.761003 CATTATCATGACGCATTTGGCTAA 58.239 37.500 0.00 0.00 34.39 3.09
2181 5888 6.384224 CATTATCATGACGCATTTGGCTAAT 58.616 36.000 0.00 0.00 34.39 1.73
2182 5889 3.696281 TCATGACGCATTTGGCTAATG 57.304 42.857 15.86 15.86 45.30 1.90
2211 5918 1.548081 TGCTGTCAATGTTCATGGGG 58.452 50.000 0.00 0.00 0.00 4.96
2264 5971 5.649395 TGTTATTAGCTGCTCAATTCTGCTT 59.351 36.000 4.91 0.00 39.10 3.91
2266 5973 2.195741 AGCTGCTCAATTCTGCTTGA 57.804 45.000 0.00 0.00 35.63 3.02
2446 6177 2.192979 CCATACAGCCACGCCCAT 59.807 61.111 0.00 0.00 0.00 4.00
2485 6216 4.292599 GGTTCGTCCACATTTTACAAACC 58.707 43.478 0.00 0.00 35.97 3.27
2554 6291 6.494893 TTTTACCACTGTGAGCATATTGAC 57.505 37.500 9.86 0.00 0.00 3.18
2583 6320 7.654022 TTTAGTTCCAACAAAGATGGACTTT 57.346 32.000 0.00 0.00 46.37 2.66
2706 6444 1.551430 TCCCGCTCCAAAAGACGAATA 59.449 47.619 0.00 0.00 0.00 1.75
2741 6479 5.360429 ACAATGGTCATGCTGTAATATTGCA 59.640 36.000 6.07 6.07 41.13 4.08
2857 6598 3.052566 TGGGTGGTGGCATGGATTTTATA 60.053 43.478 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.537371 ACGGGAGGGAAGCAAACAAG 60.537 55.000 0.00 0.00 0.00 3.16
1 2 0.821711 CACGGGAGGGAAGCAAACAA 60.822 55.000 0.00 0.00 32.31 2.83
2 3 1.228124 CACGGGAGGGAAGCAAACA 60.228 57.895 0.00 0.00 32.31 2.83
3 4 1.072505 TCACGGGAGGGAAGCAAAC 59.927 57.895 0.00 0.00 40.99 2.93
4 5 3.569849 TCACGGGAGGGAAGCAAA 58.430 55.556 0.00 0.00 40.99 3.68
10 11 2.523740 TATGCAGGTCACGGGAGGGA 62.524 60.000 0.00 0.00 42.29 4.20
11 12 1.410850 ATATGCAGGTCACGGGAGGG 61.411 60.000 0.00 0.00 0.00 4.30
12 13 0.250038 CATATGCAGGTCACGGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
13 14 0.752658 TCATATGCAGGTCACGGGAG 59.247 55.000 0.00 0.00 0.00 4.30
14 15 1.199615 TTCATATGCAGGTCACGGGA 58.800 50.000 0.00 0.00 0.00 5.14
15 16 1.942657 CTTTCATATGCAGGTCACGGG 59.057 52.381 0.00 0.00 0.00 5.28
16 17 2.352651 CACTTTCATATGCAGGTCACGG 59.647 50.000 0.00 0.00 0.00 4.94
17 18 3.002791 ACACTTTCATATGCAGGTCACG 58.997 45.455 0.00 0.00 0.00 4.35
18 19 4.379813 CCAACACTTTCATATGCAGGTCAC 60.380 45.833 0.00 0.00 0.00 3.67
19 20 3.758023 CCAACACTTTCATATGCAGGTCA 59.242 43.478 0.00 0.00 0.00 4.02
20 21 3.129287 CCCAACACTTTCATATGCAGGTC 59.871 47.826 0.00 0.00 0.00 3.85
21 22 3.091545 CCCAACACTTTCATATGCAGGT 58.908 45.455 0.00 0.00 0.00 4.00
22 23 2.159198 GCCCAACACTTTCATATGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
23 24 2.159198 GGCCCAACACTTTCATATGCAG 60.159 50.000 0.00 0.00 0.00 4.41
24 25 1.824230 GGCCCAACACTTTCATATGCA 59.176 47.619 0.00 0.00 0.00 3.96
25 26 1.136891 GGGCCCAACACTTTCATATGC 59.863 52.381 19.95 0.00 0.00 3.14
26 27 1.756538 GGGGCCCAACACTTTCATATG 59.243 52.381 26.86 0.00 0.00 1.78
27 28 1.645919 AGGGGCCCAACACTTTCATAT 59.354 47.619 27.72 0.00 0.00 1.78
28 29 1.080638 AGGGGCCCAACACTTTCATA 58.919 50.000 27.72 0.00 0.00 2.15
29 30 0.190815 AAGGGGCCCAACACTTTCAT 59.809 50.000 27.72 0.00 0.00 2.57
30 31 0.758685 CAAGGGGCCCAACACTTTCA 60.759 55.000 27.72 0.00 0.00 2.69
31 32 0.469144 TCAAGGGGCCCAACACTTTC 60.469 55.000 27.72 2.59 0.00 2.62
32 33 0.031616 TTCAAGGGGCCCAACACTTT 60.032 50.000 27.72 5.91 0.00 2.66
33 34 0.469892 CTTCAAGGGGCCCAACACTT 60.470 55.000 27.72 15.04 0.00 3.16
34 35 1.153756 CTTCAAGGGGCCCAACACT 59.846 57.895 27.72 8.57 0.00 3.55
35 36 2.574018 GCTTCAAGGGGCCCAACAC 61.574 63.158 27.72 5.74 0.00 3.32
36 37 2.203625 GCTTCAAGGGGCCCAACA 60.204 61.111 27.72 3.92 0.00 3.33
37 38 2.757980 TACGCTTCAAGGGGCCCAAC 62.758 60.000 27.72 7.11 31.71 3.77
38 39 2.070399 TTACGCTTCAAGGGGCCCAA 62.070 55.000 27.72 9.77 31.71 4.12
39 40 2.070399 TTTACGCTTCAAGGGGCCCA 62.070 55.000 27.72 0.00 31.71 5.36
40 41 0.896479 TTTTACGCTTCAAGGGGCCC 60.896 55.000 17.12 17.12 31.71 5.80
41 42 1.134367 GATTTTACGCTTCAAGGGGCC 59.866 52.381 6.40 0.00 31.71 5.80
42 43 2.092323 AGATTTTACGCTTCAAGGGGC 58.908 47.619 6.40 0.00 31.71 5.80
43 44 4.022329 ACAAAGATTTTACGCTTCAAGGGG 60.022 41.667 6.40 0.00 31.71 4.79
44 45 5.121221 ACAAAGATTTTACGCTTCAAGGG 57.879 39.130 0.00 0.00 0.00 3.95
45 46 6.074356 CCAAACAAAGATTTTACGCTTCAAGG 60.074 38.462 0.00 0.00 0.00 3.61
46 47 6.475402 ACCAAACAAAGATTTTACGCTTCAAG 59.525 34.615 0.00 0.00 0.00 3.02
47 48 6.334202 ACCAAACAAAGATTTTACGCTTCAA 58.666 32.000 0.00 0.00 0.00 2.69
48 49 5.897050 ACCAAACAAAGATTTTACGCTTCA 58.103 33.333 0.00 0.00 0.00 3.02
49 50 5.115021 CGACCAAACAAAGATTTTACGCTTC 59.885 40.000 0.00 0.00 0.00 3.86
50 51 4.973663 CGACCAAACAAAGATTTTACGCTT 59.026 37.500 0.00 0.00 0.00 4.68
51 52 4.533222 CGACCAAACAAAGATTTTACGCT 58.467 39.130 0.00 0.00 0.00 5.07
52 53 3.666797 CCGACCAAACAAAGATTTTACGC 59.333 43.478 0.00 0.00 0.00 4.42
53 54 4.851010 ACCGACCAAACAAAGATTTTACG 58.149 39.130 0.00 0.00 0.00 3.18
54 55 4.907582 CGACCGACCAAACAAAGATTTTAC 59.092 41.667 0.00 0.00 0.00 2.01
55 56 4.575645 ACGACCGACCAAACAAAGATTTTA 59.424 37.500 0.00 0.00 0.00 1.52
56 57 3.379057 ACGACCGACCAAACAAAGATTTT 59.621 39.130 0.00 0.00 0.00 1.82
57 58 2.946990 ACGACCGACCAAACAAAGATTT 59.053 40.909 0.00 0.00 0.00 2.17
58 59 2.289547 CACGACCGACCAAACAAAGATT 59.710 45.455 0.00 0.00 0.00 2.40
59 60 1.871039 CACGACCGACCAAACAAAGAT 59.129 47.619 0.00 0.00 0.00 2.40
60 61 1.292061 CACGACCGACCAAACAAAGA 58.708 50.000 0.00 0.00 0.00 2.52
61 62 0.316689 GCACGACCGACCAAACAAAG 60.317 55.000 0.00 0.00 0.00 2.77
62 63 1.025113 TGCACGACCGACCAAACAAA 61.025 50.000 0.00 0.00 0.00 2.83
63 64 1.025113 TTGCACGACCGACCAAACAA 61.025 50.000 0.00 0.00 0.00 2.83
64 65 0.816018 ATTGCACGACCGACCAAACA 60.816 50.000 0.00 0.00 0.00 2.83
65 66 1.149987 TATTGCACGACCGACCAAAC 58.850 50.000 0.00 0.00 0.00 2.93
66 67 2.004017 GATATTGCACGACCGACCAAA 58.996 47.619 0.00 0.00 0.00 3.28
67 68 1.066787 TGATATTGCACGACCGACCAA 60.067 47.619 0.00 0.00 0.00 3.67
68 69 0.533032 TGATATTGCACGACCGACCA 59.467 50.000 0.00 0.00 0.00 4.02
69 70 1.202371 TCTGATATTGCACGACCGACC 60.202 52.381 0.00 0.00 0.00 4.79
70 71 2.203800 TCTGATATTGCACGACCGAC 57.796 50.000 0.00 0.00 0.00 4.79
71 72 3.452755 AATCTGATATTGCACGACCGA 57.547 42.857 0.00 0.00 0.00 4.69
72 73 3.303329 CCAAATCTGATATTGCACGACCG 60.303 47.826 0.00 0.00 0.00 4.79
73 74 3.876914 TCCAAATCTGATATTGCACGACC 59.123 43.478 0.00 0.00 0.00 4.79
74 75 4.572389 AGTCCAAATCTGATATTGCACGAC 59.428 41.667 0.00 2.69 0.00 4.34
75 76 4.769688 AGTCCAAATCTGATATTGCACGA 58.230 39.130 0.00 0.00 0.00 4.35
76 77 5.295292 AGAAGTCCAAATCTGATATTGCACG 59.705 40.000 0.00 0.00 0.00 5.34
77 78 6.690194 AGAAGTCCAAATCTGATATTGCAC 57.310 37.500 0.00 0.00 0.00 4.57
78 79 8.806429 TTTAGAAGTCCAAATCTGATATTGCA 57.194 30.769 0.00 0.00 0.00 4.08
79 80 9.674824 CATTTAGAAGTCCAAATCTGATATTGC 57.325 33.333 0.00 0.00 0.00 3.56
82 83 9.265901 CGACATTTAGAAGTCCAAATCTGATAT 57.734 33.333 0.00 0.00 0.00 1.63
83 84 8.258007 ACGACATTTAGAAGTCCAAATCTGATA 58.742 33.333 0.00 0.00 0.00 2.15
84 85 7.065085 CACGACATTTAGAAGTCCAAATCTGAT 59.935 37.037 0.00 0.00 0.00 2.90
85 86 6.368791 CACGACATTTAGAAGTCCAAATCTGA 59.631 38.462 0.00 0.00 0.00 3.27
86 87 6.537566 CACGACATTTAGAAGTCCAAATCTG 58.462 40.000 0.00 0.00 0.00 2.90
87 88 5.122396 GCACGACATTTAGAAGTCCAAATCT 59.878 40.000 0.00 0.00 0.00 2.40
88 89 5.106712 TGCACGACATTTAGAAGTCCAAATC 60.107 40.000 0.00 0.00 0.00 2.17
89 90 4.759693 TGCACGACATTTAGAAGTCCAAAT 59.240 37.500 0.00 0.00 0.00 2.32
90 91 4.130857 TGCACGACATTTAGAAGTCCAAA 58.869 39.130 0.00 0.00 0.00 3.28
91 92 3.734463 TGCACGACATTTAGAAGTCCAA 58.266 40.909 0.00 0.00 0.00 3.53
92 93 3.394674 TGCACGACATTTAGAAGTCCA 57.605 42.857 0.00 0.00 0.00 4.02
93 94 3.684788 ACATGCACGACATTTAGAAGTCC 59.315 43.478 0.00 0.00 36.64 3.85
94 95 4.490959 CGACATGCACGACATTTAGAAGTC 60.491 45.833 7.02 0.00 36.64 3.01
95 96 3.367932 CGACATGCACGACATTTAGAAGT 59.632 43.478 7.02 0.00 36.64 3.01
96 97 3.782250 GCGACATGCACGACATTTAGAAG 60.782 47.826 15.30 0.00 45.45 2.85
97 98 2.093625 GCGACATGCACGACATTTAGAA 59.906 45.455 15.30 0.00 45.45 2.10
98 99 1.658596 GCGACATGCACGACATTTAGA 59.341 47.619 15.30 0.00 45.45 2.10
99 100 1.589731 CGCGACATGCACGACATTTAG 60.590 52.381 15.30 0.00 46.97 1.85
100 101 0.368567 CGCGACATGCACGACATTTA 59.631 50.000 15.30 0.00 46.97 1.40
101 102 1.132436 CGCGACATGCACGACATTT 59.868 52.632 15.30 0.00 46.97 2.32
102 103 2.739704 CCGCGACATGCACGACATT 61.740 57.895 8.23 0.00 46.97 2.71
103 104 3.188100 CCGCGACATGCACGACAT 61.188 61.111 8.23 0.00 46.97 3.06
104 105 4.656117 ACCGCGACATGCACGACA 62.656 61.111 8.23 0.00 46.97 4.35
105 106 3.838795 GACCGCGACATGCACGAC 61.839 66.667 8.23 7.02 46.97 4.34
106 107 3.567478 AAGACCGCGACATGCACGA 62.567 57.895 8.23 0.00 46.97 4.35
107 108 1.348538 TAAAGACCGCGACATGCACG 61.349 55.000 8.23 8.25 46.97 5.34
108 109 0.370273 CTAAAGACCGCGACATGCAC 59.630 55.000 8.23 0.00 46.97 4.57
109 110 0.739462 CCTAAAGACCGCGACATGCA 60.739 55.000 8.23 0.00 46.97 3.96
110 111 0.459585 TCCTAAAGACCGCGACATGC 60.460 55.000 8.23 0.00 41.47 4.06
111 112 1.278238 GTCCTAAAGACCGCGACATG 58.722 55.000 8.23 0.00 39.84 3.21
112 113 0.892755 TGTCCTAAAGACCGCGACAT 59.107 50.000 8.23 0.00 45.68 3.06
113 114 0.892755 ATGTCCTAAAGACCGCGACA 59.107 50.000 8.23 0.00 45.68 4.35
114 115 1.278238 CATGTCCTAAAGACCGCGAC 58.722 55.000 8.23 0.40 45.68 5.19
115 116 0.459585 GCATGTCCTAAAGACCGCGA 60.460 55.000 8.23 0.00 45.68 5.87
116 117 1.429148 GGCATGTCCTAAAGACCGCG 61.429 60.000 0.00 0.00 45.68 6.46
117 118 0.392461 TGGCATGTCCTAAAGACCGC 60.392 55.000 0.00 0.00 45.68 5.68
118 119 2.158900 AGATGGCATGTCCTAAAGACCG 60.159 50.000 3.81 0.00 45.68 4.79
119 120 3.471680 GAGATGGCATGTCCTAAAGACC 58.528 50.000 13.35 0.00 45.68 3.85
120 121 3.118261 TGGAGATGGCATGTCCTAAAGAC 60.118 47.826 35.04 14.48 42.86 3.01
121 122 3.114606 TGGAGATGGCATGTCCTAAAGA 58.885 45.455 35.04 18.25 42.86 2.52
122 123 3.565764 TGGAGATGGCATGTCCTAAAG 57.434 47.619 35.04 0.00 42.86 1.85
123 124 3.202818 ACATGGAGATGGCATGTCCTAAA 59.797 43.478 35.04 21.21 42.86 1.85
124 125 2.779430 ACATGGAGATGGCATGTCCTAA 59.221 45.455 35.04 21.84 42.86 2.69
125 126 2.411583 ACATGGAGATGGCATGTCCTA 58.588 47.619 35.04 24.65 42.86 2.94
126 127 1.219773 ACATGGAGATGGCATGTCCT 58.780 50.000 35.04 22.05 42.86 3.85
127 128 2.062971 AACATGGAGATGGCATGTCC 57.937 50.000 31.06 31.06 42.74 4.02
128 129 7.040201 ACAAATATAACATGGAGATGGCATGTC 60.040 37.037 15.79 15.79 38.45 3.06
129 130 6.779049 ACAAATATAACATGGAGATGGCATGT 59.221 34.615 3.81 0.00 40.80 3.21
130 131 7.176165 AGACAAATATAACATGGAGATGGCATG 59.824 37.037 3.81 0.00 33.39 4.06
131 132 7.236529 AGACAAATATAACATGGAGATGGCAT 58.763 34.615 0.00 0.00 33.39 4.40
132 133 6.604171 AGACAAATATAACATGGAGATGGCA 58.396 36.000 0.00 0.00 33.39 4.92
133 134 7.661437 TGTAGACAAATATAACATGGAGATGGC 59.339 37.037 0.00 0.00 33.39 4.40
134 135 9.730705 ATGTAGACAAATATAACATGGAGATGG 57.269 33.333 0.00 0.00 33.39 3.51
137 138 9.987272 CTCATGTAGACAAATATAACATGGAGA 57.013 33.333 12.34 0.00 44.72 3.71
138 139 9.212641 CCTCATGTAGACAAATATAACATGGAG 57.787 37.037 12.34 8.95 44.72 3.86
139 140 8.933653 TCCTCATGTAGACAAATATAACATGGA 58.066 33.333 12.34 2.37 44.72 3.41
140 141 9.212641 CTCCTCATGTAGACAAATATAACATGG 57.787 37.037 12.34 5.13 44.72 3.66
141 142 9.212641 CCTCCTCATGTAGACAAATATAACATG 57.787 37.037 7.29 7.29 45.55 3.21
142 143 8.378565 CCCTCCTCATGTAGACAAATATAACAT 58.621 37.037 0.00 0.00 0.00 2.71
143 144 7.347222 ACCCTCCTCATGTAGACAAATATAACA 59.653 37.037 0.00 0.00 0.00 2.41
144 145 7.736893 ACCCTCCTCATGTAGACAAATATAAC 58.263 38.462 0.00 0.00 0.00 1.89
145 146 7.931015 ACCCTCCTCATGTAGACAAATATAA 57.069 36.000 0.00 0.00 0.00 0.98
146 147 8.867097 GTTACCCTCCTCATGTAGACAAATATA 58.133 37.037 0.00 0.00 0.00 0.86
147 148 7.471539 CGTTACCCTCCTCATGTAGACAAATAT 60.472 40.741 0.00 0.00 0.00 1.28
148 149 6.183360 CGTTACCCTCCTCATGTAGACAAATA 60.183 42.308 0.00 0.00 0.00 1.40
149 150 5.395324 CGTTACCCTCCTCATGTAGACAAAT 60.395 44.000 0.00 0.00 0.00 2.32
150 151 4.081862 CGTTACCCTCCTCATGTAGACAAA 60.082 45.833 0.00 0.00 0.00 2.83
151 152 3.446161 CGTTACCCTCCTCATGTAGACAA 59.554 47.826 0.00 0.00 0.00 3.18
152 153 3.021695 CGTTACCCTCCTCATGTAGACA 58.978 50.000 0.00 0.00 0.00 3.41
153 154 2.223758 GCGTTACCCTCCTCATGTAGAC 60.224 54.545 0.00 0.00 0.00 2.59
154 155 2.029623 GCGTTACCCTCCTCATGTAGA 58.970 52.381 0.00 0.00 0.00 2.59
155 156 1.269102 CGCGTTACCCTCCTCATGTAG 60.269 57.143 0.00 0.00 0.00 2.74
156 157 0.742505 CGCGTTACCCTCCTCATGTA 59.257 55.000 0.00 0.00 0.00 2.29
157 158 1.515954 CGCGTTACCCTCCTCATGT 59.484 57.895 0.00 0.00 0.00 3.21
158 159 1.227263 CCGCGTTACCCTCCTCATG 60.227 63.158 4.92 0.00 0.00 3.07
159 160 1.380785 TCCGCGTTACCCTCCTCAT 60.381 57.895 4.92 0.00 0.00 2.90
160 161 2.036098 TCCGCGTTACCCTCCTCA 59.964 61.111 4.92 0.00 0.00 3.86
161 162 2.806237 CTCCGCGTTACCCTCCTC 59.194 66.667 4.92 0.00 0.00 3.71
162 163 3.459063 GCTCCGCGTTACCCTCCT 61.459 66.667 4.92 0.00 0.00 3.69
163 164 3.766691 TGCTCCGCGTTACCCTCC 61.767 66.667 4.92 0.00 0.00 4.30
164 165 2.508663 GTGCTCCGCGTTACCCTC 60.509 66.667 4.92 0.00 0.00 4.30
165 166 2.573609 GATGTGCTCCGCGTTACCCT 62.574 60.000 4.92 0.00 0.00 4.34
166 167 2.125269 ATGTGCTCCGCGTTACCC 60.125 61.111 4.92 0.00 0.00 3.69
167 168 2.171725 GGATGTGCTCCGCGTTACC 61.172 63.158 4.92 0.00 33.29 2.85
168 169 3.395669 GGATGTGCTCCGCGTTAC 58.604 61.111 4.92 0.00 33.29 2.50
185 186 0.530650 ACATAGCAACATCGCCGGAG 60.531 55.000 5.05 0.00 0.00 4.63
186 187 0.809636 CACATAGCAACATCGCCGGA 60.810 55.000 5.05 0.00 0.00 5.14
187 188 0.809636 TCACATAGCAACATCGCCGG 60.810 55.000 0.00 0.00 0.00 6.13
188 189 0.578683 CTCACATAGCAACATCGCCG 59.421 55.000 0.00 0.00 0.00 6.46
189 190 0.940126 CCTCACATAGCAACATCGCC 59.060 55.000 0.00 0.00 0.00 5.54
190 191 0.940126 CCCTCACATAGCAACATCGC 59.060 55.000 0.00 0.00 0.00 4.58
191 192 2.477825 CTCCCTCACATAGCAACATCG 58.522 52.381 0.00 0.00 0.00 3.84
192 193 2.171448 ACCTCCCTCACATAGCAACATC 59.829 50.000 0.00 0.00 0.00 3.06
193 194 2.092753 CACCTCCCTCACATAGCAACAT 60.093 50.000 0.00 0.00 0.00 2.71
194 195 1.278985 CACCTCCCTCACATAGCAACA 59.721 52.381 0.00 0.00 0.00 3.33
195 196 1.279271 ACACCTCCCTCACATAGCAAC 59.721 52.381 0.00 0.00 0.00 4.17
196 197 1.278985 CACACCTCCCTCACATAGCAA 59.721 52.381 0.00 0.00 0.00 3.91
197 198 0.904649 CACACCTCCCTCACATAGCA 59.095 55.000 0.00 0.00 0.00 3.49
198 199 0.179000 CCACACCTCCCTCACATAGC 59.821 60.000 0.00 0.00 0.00 2.97
199 200 0.179000 GCCACACCTCCCTCACATAG 59.821 60.000 0.00 0.00 0.00 2.23
200 201 0.546507 TGCCACACCTCCCTCACATA 60.547 55.000 0.00 0.00 0.00 2.29
201 202 1.210204 ATGCCACACCTCCCTCACAT 61.210 55.000 0.00 0.00 0.00 3.21
202 203 1.426251 AATGCCACACCTCCCTCACA 61.426 55.000 0.00 0.00 0.00 3.58
203 204 0.962356 CAATGCCACACCTCCCTCAC 60.962 60.000 0.00 0.00 0.00 3.51
204 205 1.379916 CAATGCCACACCTCCCTCA 59.620 57.895 0.00 0.00 0.00 3.86
205 206 1.379044 CCAATGCCACACCTCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
206 207 1.852157 TCCAATGCCACACCTCCCT 60.852 57.895 0.00 0.00 0.00 4.20
207 208 1.678970 GTCCAATGCCACACCTCCC 60.679 63.158 0.00 0.00 0.00 4.30
208 209 1.678970 GGTCCAATGCCACACCTCC 60.679 63.158 0.00 0.00 0.00 4.30
209 210 0.251341 AAGGTCCAATGCCACACCTC 60.251 55.000 0.00 0.00 38.37 3.85
210 211 0.540365 CAAGGTCCAATGCCACACCT 60.540 55.000 0.00 0.00 41.27 4.00
211 212 1.535204 CCAAGGTCCAATGCCACACC 61.535 60.000 0.00 0.00 0.00 4.16
212 213 0.539438 TCCAAGGTCCAATGCCACAC 60.539 55.000 0.00 0.00 0.00 3.82
213 214 0.409092 ATCCAAGGTCCAATGCCACA 59.591 50.000 0.00 0.00 0.00 4.17
214 215 1.106285 GATCCAAGGTCCAATGCCAC 58.894 55.000 0.00 0.00 0.00 5.01
215 216 0.703488 TGATCCAAGGTCCAATGCCA 59.297 50.000 0.00 0.00 0.00 4.92
216 217 1.106285 GTGATCCAAGGTCCAATGCC 58.894 55.000 0.00 0.00 0.00 4.40
217 218 2.134789 AGTGATCCAAGGTCCAATGC 57.865 50.000 0.00 0.00 0.00 3.56
218 219 4.641989 CCTAAAGTGATCCAAGGTCCAATG 59.358 45.833 0.00 0.00 0.00 2.82
219 220 4.292306 ACCTAAAGTGATCCAAGGTCCAAT 59.708 41.667 0.00 0.00 35.67 3.16
220 221 3.655777 ACCTAAAGTGATCCAAGGTCCAA 59.344 43.478 0.00 0.00 35.67 3.53
221 222 3.256704 ACCTAAAGTGATCCAAGGTCCA 58.743 45.455 0.00 0.00 35.67 4.02
222 223 4.010349 CAACCTAAAGTGATCCAAGGTCC 58.990 47.826 0.00 0.00 39.64 4.46
223 224 4.652822 ACAACCTAAAGTGATCCAAGGTC 58.347 43.478 0.00 0.00 39.64 3.85
224 225 4.724279 ACAACCTAAAGTGATCCAAGGT 57.276 40.909 0.00 0.00 42.35 3.50
225 226 6.238648 AGTTACAACCTAAAGTGATCCAAGG 58.761 40.000 0.00 0.00 0.00 3.61
226 227 8.095169 AGTAGTTACAACCTAAAGTGATCCAAG 58.905 37.037 0.00 0.00 0.00 3.61
227 228 7.876068 CAGTAGTTACAACCTAAAGTGATCCAA 59.124 37.037 0.00 0.00 0.00 3.53
228 229 7.233962 TCAGTAGTTACAACCTAAAGTGATCCA 59.766 37.037 0.00 0.00 0.00 3.41
229 230 7.609056 TCAGTAGTTACAACCTAAAGTGATCC 58.391 38.462 0.00 0.00 0.00 3.36
230 231 7.760340 CCTCAGTAGTTACAACCTAAAGTGATC 59.240 40.741 0.00 0.00 0.00 2.92
231 232 7.612677 CCTCAGTAGTTACAACCTAAAGTGAT 58.387 38.462 0.00 0.00 0.00 3.06
232 233 6.517864 GCCTCAGTAGTTACAACCTAAAGTGA 60.518 42.308 0.00 0.00 0.00 3.41
233 234 5.638234 GCCTCAGTAGTTACAACCTAAAGTG 59.362 44.000 0.00 0.00 0.00 3.16
234 235 5.279859 GGCCTCAGTAGTTACAACCTAAAGT 60.280 44.000 0.00 0.00 0.00 2.66
235 236 5.046520 AGGCCTCAGTAGTTACAACCTAAAG 60.047 44.000 0.00 0.00 0.00 1.85
236 237 4.842380 AGGCCTCAGTAGTTACAACCTAAA 59.158 41.667 0.00 0.00 0.00 1.85
237 238 4.422984 AGGCCTCAGTAGTTACAACCTAA 58.577 43.478 0.00 0.00 0.00 2.69
238 239 4.057063 AGGCCTCAGTAGTTACAACCTA 57.943 45.455 0.00 0.00 0.00 3.08
239 240 2.903926 AGGCCTCAGTAGTTACAACCT 58.096 47.619 0.00 0.00 0.00 3.50
240 241 3.512724 TGTAGGCCTCAGTAGTTACAACC 59.487 47.826 9.68 0.00 0.00 3.77
241 242 4.796038 TGTAGGCCTCAGTAGTTACAAC 57.204 45.455 9.68 0.00 0.00 3.32
242 243 4.404715 GGATGTAGGCCTCAGTAGTTACAA 59.595 45.833 9.68 0.00 0.00 2.41
243 244 3.958798 GGATGTAGGCCTCAGTAGTTACA 59.041 47.826 9.68 5.71 0.00 2.41
244 245 4.216708 AGGATGTAGGCCTCAGTAGTTAC 58.783 47.826 9.68 0.00 0.00 2.50
245 246 4.537945 AGGATGTAGGCCTCAGTAGTTA 57.462 45.455 9.68 0.00 0.00 2.24
246 247 3.406512 AGGATGTAGGCCTCAGTAGTT 57.593 47.619 9.68 0.00 0.00 2.24
265 266 1.035932 ACCACCACCGTATCCGAGAG 61.036 60.000 0.00 0.00 35.63 3.20
266 267 0.612732 AACCACCACCGTATCCGAGA 60.613 55.000 0.00 0.00 35.63 4.04
267 268 0.248289 AAACCACCACCGTATCCGAG 59.752 55.000 0.00 0.00 35.63 4.63
268 269 0.037139 CAAACCACCACCGTATCCGA 60.037 55.000 0.00 0.00 35.63 4.55
269 270 1.022451 CCAAACCACCACCGTATCCG 61.022 60.000 0.00 0.00 0.00 4.18
270 271 0.037160 ACCAAACCACCACCGTATCC 59.963 55.000 0.00 0.00 0.00 2.59
271 272 1.161843 CACCAAACCACCACCGTATC 58.838 55.000 0.00 0.00 0.00 2.24
272 273 0.250989 CCACCAAACCACCACCGTAT 60.251 55.000 0.00 0.00 0.00 3.06
372 373 7.760340 CCAAATACTCTAGCGTTTCTCTACTTT 59.240 37.037 0.00 0.00 0.00 2.66
376 377 5.889853 TCCCAAATACTCTAGCGTTTCTCTA 59.110 40.000 0.00 0.00 0.00 2.43
378 379 5.007385 TCCCAAATACTCTAGCGTTTCTC 57.993 43.478 0.00 0.00 0.00 2.87
387 388 5.202004 GACCAGACTCTCCCAAATACTCTA 58.798 45.833 0.00 0.00 0.00 2.43
401 402 1.784525 CCGAGTTGTTGACCAGACTC 58.215 55.000 0.00 0.00 36.14 3.36
406 407 1.990160 AAGGGCCGAGTTGTTGACCA 61.990 55.000 0.00 0.00 0.00 4.02
408 409 1.439679 CTAAGGGCCGAGTTGTTGAC 58.560 55.000 0.00 0.00 0.00 3.18
409 410 0.323629 CCTAAGGGCCGAGTTGTTGA 59.676 55.000 0.00 0.00 0.00 3.18
507 508 8.335356 CAACACACACAATATACAATAGCCTAC 58.665 37.037 0.00 0.00 0.00 3.18
519 520 2.591923 TGGCACCAACACACACAATAT 58.408 42.857 0.00 0.00 0.00 1.28
523 524 0.682532 ACATGGCACCAACACACACA 60.683 50.000 0.00 0.00 0.00 3.72
524 525 0.248990 CACATGGCACCAACACACAC 60.249 55.000 0.00 0.00 0.00 3.82
525 526 2.014064 GCACATGGCACCAACACACA 62.014 55.000 0.00 0.00 43.97 3.72
526 527 1.300080 GCACATGGCACCAACACAC 60.300 57.895 0.00 0.00 43.97 3.82
527 528 3.127451 GCACATGGCACCAACACA 58.873 55.556 0.00 0.00 43.97 3.72
561 562 0.250901 ACAGAAAGCCGGAGCACAAT 60.251 50.000 5.05 0.00 43.56 2.71
571 572 6.586463 GGAGCAATAAAAGTTTACAGAAAGCC 59.414 38.462 0.00 0.00 0.00 4.35
577 578 6.208599 TGGAAGGGAGCAATAAAAGTTTACAG 59.791 38.462 0.00 0.00 0.00 2.74
643 645 3.562973 GCATATCCATGTGTGAGTGAAGG 59.437 47.826 0.00 0.00 34.40 3.46
694 1215 1.694844 GTAGGGCCAGGAGTAGAGTC 58.305 60.000 6.18 0.00 0.00 3.36
708 1229 1.143684 CCACATTCCATCCAGGTAGGG 59.856 57.143 0.82 0.00 39.02 3.53
729 3382 0.744281 AAGCCGGTCCAACAAACAAG 59.256 50.000 1.90 0.00 0.00 3.16
958 4635 2.096268 TCTGAATGTTTCGCTTCGCTTG 60.096 45.455 0.00 0.00 0.00 4.01
971 4657 1.219213 TGGGTTTGGGGTTCTGAATGT 59.781 47.619 0.00 0.00 0.00 2.71
972 4658 2.008242 TGGGTTTGGGGTTCTGAATG 57.992 50.000 0.00 0.00 0.00 2.67
973 4659 2.325484 GTTGGGTTTGGGGTTCTGAAT 58.675 47.619 0.00 0.00 0.00 2.57
974 4660 1.783071 GTTGGGTTTGGGGTTCTGAA 58.217 50.000 0.00 0.00 0.00 3.02
975 4661 0.466555 CGTTGGGTTTGGGGTTCTGA 60.467 55.000 0.00 0.00 0.00 3.27
976 4662 2.037871 CGTTGGGTTTGGGGTTCTG 58.962 57.895 0.00 0.00 0.00 3.02
977 4663 1.830847 GCGTTGGGTTTGGGGTTCT 60.831 57.895 0.00 0.00 0.00 3.01
978 4664 2.732016 GCGTTGGGTTTGGGGTTC 59.268 61.111 0.00 0.00 0.00 3.62
979 4665 2.840572 GGCGTTGGGTTTGGGGTT 60.841 61.111 0.00 0.00 0.00 4.11
1014 4700 3.107104 CTCTCTCGCTCGCTCGCTT 62.107 63.158 0.00 0.00 0.00 4.68
1025 4711 2.334653 GCCGCCATCTCTCTCTCG 59.665 66.667 0.00 0.00 0.00 4.04
1406 5094 4.994471 CAGCACAGCTCCACGGCA 62.994 66.667 0.00 0.00 36.40 5.69
1526 5214 2.328099 GGCCGTCTGCTTCACCTTG 61.328 63.158 0.00 0.00 40.92 3.61
1619 5307 4.991687 GCAAGAACACAAGAAGTAGCTAGT 59.008 41.667 0.00 0.00 0.00 2.57
1645 5335 1.470098 GCAAGACATGTTCCATCGCTT 59.530 47.619 0.00 0.00 0.00 4.68
1646 5336 1.089920 GCAAGACATGTTCCATCGCT 58.910 50.000 0.00 0.00 0.00 4.93
1647 5337 0.247814 CGCAAGACATGTTCCATCGC 60.248 55.000 0.00 0.00 43.02 4.58
1648 5338 1.078709 ACGCAAGACATGTTCCATCG 58.921 50.000 0.00 3.47 43.62 3.84
1649 5339 3.559238 AAACGCAAGACATGTTCCATC 57.441 42.857 0.00 0.00 43.62 3.51
1650 5340 4.320608 AAAAACGCAAGACATGTTCCAT 57.679 36.364 0.00 0.00 43.62 3.41
1673 5365 4.261322 GCAAGAAGACAAGAACATGCAAGA 60.261 41.667 0.00 0.00 33.00 3.02
1689 5381 0.505231 TTGAACGCGTACGCAAGAAG 59.495 50.000 36.44 23.23 45.53 2.85
1717 5409 2.250646 CAGCAGCAGCAGCAAACTA 58.749 52.632 12.92 0.00 45.49 2.24
1718 5410 3.039988 CAGCAGCAGCAGCAAACT 58.960 55.556 12.92 0.00 45.49 2.66
1760 5455 3.120649 CCAGCAGTACGAACAAAACTAGC 60.121 47.826 0.00 0.00 0.00 3.42
1786 5481 6.776887 ATCTTGGGAGTCTTGGATTCATAT 57.223 37.500 0.00 0.00 0.00 1.78
1852 5547 8.024285 CACCAACAAAACCATTATATTACACGT 58.976 33.333 0.00 0.00 0.00 4.49
1853 5548 7.486551 CCACCAACAAAACCATTATATTACACG 59.513 37.037 0.00 0.00 0.00 4.49
1854 5549 8.524487 TCCACCAACAAAACCATTATATTACAC 58.476 33.333 0.00 0.00 0.00 2.90
1855 5550 8.651589 TCCACCAACAAAACCATTATATTACA 57.348 30.769 0.00 0.00 0.00 2.41
1856 5551 9.528018 CATCCACCAACAAAACCATTATATTAC 57.472 33.333 0.00 0.00 0.00 1.89
1928 5627 3.512329 TGAAACAGCAATCCATGAGCATT 59.488 39.130 0.00 0.00 0.00 3.56
1973 5678 2.636830 TCAAGCTAGCAGAATTGAGCC 58.363 47.619 18.83 0.00 35.45 4.70
2043 5749 3.703001 TCTTGGGAGTCTTGGATTCAC 57.297 47.619 0.00 0.00 0.00 3.18
2146 5853 6.207221 TGCGTCATGATAATGCTAAATCCAAT 59.793 34.615 0.00 0.00 0.00 3.16
2179 5886 5.046878 ACATTGACAGCAATCCATGAACATT 60.047 36.000 0.00 0.00 42.66 2.71
2180 5887 4.464951 ACATTGACAGCAATCCATGAACAT 59.535 37.500 0.00 0.00 42.66 2.71
2181 5888 3.827876 ACATTGACAGCAATCCATGAACA 59.172 39.130 0.00 0.00 42.66 3.18
2182 5889 4.445452 ACATTGACAGCAATCCATGAAC 57.555 40.909 0.00 0.00 42.66 3.18
2211 5918 3.925913 TGTTCTTGAAACAGCAAAGCAAC 59.074 39.130 0.00 0.00 0.00 4.17
2264 5971 7.016465 AGGGATGAAGTTTCAAATCCAAAATCA 59.984 33.333 13.63 0.00 41.13 2.57
2266 5973 7.163441 CAGGGATGAAGTTTCAAATCCAAAAT 58.837 34.615 13.63 0.00 41.13 1.82
2446 6177 1.879575 ACCCACTGCCATCTAAGCTA 58.120 50.000 0.00 0.00 0.00 3.32
2473 6204 4.663166 TGTGTGACACGGTTTGTAAAATG 58.337 39.130 11.51 0.00 39.17 2.32
2480 6211 0.732571 AAGCTGTGTGACACGGTTTG 59.267 50.000 22.92 6.92 41.32 2.93
2485 6216 0.378257 AAAGCAAGCTGTGTGACACG 59.622 50.000 11.51 7.18 37.14 4.49
2554 6291 6.040391 TCCATCTTTGTTGGAACTAAAAGTGG 59.960 38.462 12.09 12.09 40.29 4.00
2706 6444 7.093640 ACAGCATGACCATTGTAATTTCTCAAT 60.094 33.333 0.00 0.00 39.69 2.57
2741 6479 4.235360 CGAAGACGTTGGATAAACAGAGT 58.765 43.478 0.00 0.00 38.84 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.