Multiple sequence alignment - TraesCS5A01G072800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G072800 chr5A 100.000 2723 0 0 1 2723 84152315 84149593 0.000000e+00 5029.0
1 TraesCS5A01G072800 chr5D 91.850 2454 73 44 1 2386 90688381 90685987 0.000000e+00 3306.0
2 TraesCS5A01G072800 chr5B 92.069 2383 78 47 55 2386 96020475 96018153 0.000000e+00 3251.0
3 TraesCS5A01G072800 chr4A 91.667 72 6 0 1013 1084 546485387 546485316 1.730000e-17 100.0
4 TraesCS5A01G072800 chr4D 90.909 66 6 0 1019 1084 50327262 50327327 3.730000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G072800 chr5A 84149593 84152315 2722 True 5029 5029 100.000 1 2723 1 chr5A.!!$R1 2722
1 TraesCS5A01G072800 chr5D 90685987 90688381 2394 True 3306 3306 91.850 1 2386 1 chr5D.!!$R1 2385
2 TraesCS5A01G072800 chr5B 96018153 96020475 2322 True 3251 3251 92.069 55 2386 1 chr5B.!!$R1 2331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 762 0.811915 TGAGTGTAGAAGGAGCGAGC 59.188 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2644 0.106335 CCCTGCCTAGCTCTCACATG 59.894 60.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 134 5.003804 CCATCTTACTAGGTTGTTGCTTGT 58.996 41.667 0.00 0.00 0.00 3.16
362 371 1.757405 GCACTCCTCCTCCTGAGCTAT 60.757 57.143 0.00 0.00 39.98 2.97
363 372 2.238521 CACTCCTCCTCCTGAGCTATC 58.761 57.143 0.00 0.00 39.98 2.08
419 447 2.233676 GCCAACCCAGGATTAAACAAGG 59.766 50.000 0.00 0.00 0.00 3.61
676 710 7.524912 CATCAACACCTGATCTTTAGTCTTTG 58.475 38.462 0.00 0.00 43.28 2.77
715 749 2.024414 GTCCCTTGCAAGTTTGAGTGT 58.976 47.619 24.35 0.00 0.00 3.55
725 759 3.305398 AGTTTGAGTGTAGAAGGAGCG 57.695 47.619 0.00 0.00 0.00 5.03
726 760 2.891580 AGTTTGAGTGTAGAAGGAGCGA 59.108 45.455 0.00 0.00 0.00 4.93
727 761 3.057174 AGTTTGAGTGTAGAAGGAGCGAG 60.057 47.826 0.00 0.00 0.00 5.03
728 762 0.811915 TGAGTGTAGAAGGAGCGAGC 59.188 55.000 0.00 0.00 0.00 5.03
729 763 1.099689 GAGTGTAGAAGGAGCGAGCT 58.900 55.000 0.00 0.00 0.00 4.09
730 764 0.814457 AGTGTAGAAGGAGCGAGCTG 59.186 55.000 0.84 0.00 0.00 4.24
731 765 0.811915 GTGTAGAAGGAGCGAGCTGA 59.188 55.000 0.84 0.00 0.00 4.26
732 766 1.202582 GTGTAGAAGGAGCGAGCTGAA 59.797 52.381 0.84 0.00 0.00 3.02
733 767 1.474478 TGTAGAAGGAGCGAGCTGAAG 59.526 52.381 0.84 0.00 0.00 3.02
734 768 1.746220 GTAGAAGGAGCGAGCTGAAGA 59.254 52.381 0.84 0.00 0.00 2.87
735 769 0.817013 AGAAGGAGCGAGCTGAAGAG 59.183 55.000 0.84 0.00 0.00 2.85
736 770 0.814457 GAAGGAGCGAGCTGAAGAGA 59.186 55.000 0.84 0.00 0.00 3.10
737 771 0.817013 AAGGAGCGAGCTGAAGAGAG 59.183 55.000 0.84 0.00 0.00 3.20
738 772 1.226945 GGAGCGAGCTGAAGAGAGC 60.227 63.158 0.84 0.00 39.46 4.09
779 814 5.071115 GGAGAGGACAGTTCTTGGCTTATAT 59.929 44.000 0.00 0.00 34.18 0.86
814 849 3.144506 ACTTCTCTGTGGTTTGCATGAG 58.855 45.455 0.00 0.00 0.00 2.90
912 947 3.823304 GCATGACCAGAGTTTCTTCCTTT 59.177 43.478 0.00 0.00 0.00 3.11
926 965 7.772757 AGTTTCTTCCTTTAGATGGATGCTTAG 59.227 37.037 0.00 0.00 33.09 2.18
1009 1049 1.661463 TTGAGGAGAGATGGGCAAGT 58.339 50.000 0.00 0.00 0.00 3.16
1104 1144 6.696148 AGGTACGTAGCAATTAATCTTCTTCG 59.304 38.462 25.28 0.00 0.00 3.79
1119 1159 3.386768 TCTTCGGTTCTTCTTCACCAG 57.613 47.619 0.00 0.00 31.84 4.00
1166 1213 2.867429 ACTGCTAATCATTTGCGTTGC 58.133 42.857 0.00 0.00 0.00 4.17
1239 1286 3.866582 CTCATGGGGGCCGACCTC 61.867 72.222 15.32 0.00 41.63 3.85
1509 1556 4.821589 GCTTCCGACTGCTCCGGG 62.822 72.222 0.00 0.00 46.47 5.73
1572 1619 4.083862 GAGAGCGCCTTCGGGGTT 62.084 66.667 2.29 0.00 37.97 4.11
1724 1774 2.093288 TCAGCCTCAGGATGACATGAAC 60.093 50.000 7.85 0.00 43.58 3.18
1771 1821 9.754382 CGTTGATCATATATATCATCATCACCA 57.246 33.333 9.78 0.00 33.52 4.17
1778 1828 9.000486 CATATATATCATCATCACCATCCAAGC 58.000 37.037 0.00 0.00 0.00 4.01
1779 1829 2.353357 TCATCATCACCATCCAAGCC 57.647 50.000 0.00 0.00 0.00 4.35
1780 1830 1.565288 TCATCATCACCATCCAAGCCA 59.435 47.619 0.00 0.00 0.00 4.75
1781 1831 2.176148 TCATCATCACCATCCAAGCCAT 59.824 45.455 0.00 0.00 0.00 4.40
1782 1832 2.061509 TCATCACCATCCAAGCCATG 57.938 50.000 0.00 0.00 0.00 3.66
1805 1855 4.034258 GGCCATGGCATGATCGCG 62.034 66.667 36.56 12.31 44.11 5.87
1844 1894 4.609947 CTTGTGTTGCATTGTAGAAGCAA 58.390 39.130 0.00 0.00 45.07 3.91
1849 1899 4.685169 TTGCATTGTAGAAGCAAGTAGC 57.315 40.909 0.00 0.00 42.71 3.58
1877 1930 9.634021 ATGAGTATTCCTTATCTTTTCTTTCCC 57.366 33.333 0.00 0.00 0.00 3.97
1898 1951 4.262164 CCCTTTTTGCTGTTGCTTAGATGT 60.262 41.667 0.00 0.00 40.48 3.06
1925 1978 2.444895 ATGGAGCTCGGGGAGGAC 60.445 66.667 7.83 0.00 0.00 3.85
1947 2000 2.803492 CGGGTTCTGAATTCCGATCCTC 60.803 54.545 22.15 12.62 44.69 3.71
1955 2008 3.181451 TGAATTCCGATCCTCATCCCAAG 60.181 47.826 2.27 0.00 0.00 3.61
1956 2009 0.469917 TTCCGATCCTCATCCCAAGC 59.530 55.000 0.00 0.00 0.00 4.01
1957 2010 0.399091 TCCGATCCTCATCCCAAGCT 60.399 55.000 0.00 0.00 0.00 3.74
2023 2076 2.593346 AGTCATCGATGTTCAGAGCC 57.407 50.000 24.09 4.60 0.00 4.70
2165 2234 6.406692 AACAGAAGTGCAGAGAAACTAGTA 57.593 37.500 0.00 0.00 0.00 1.82
2196 2265 5.622914 GCATGAAAAGTGAATAGTGGCACAT 60.623 40.000 21.41 8.51 44.52 3.21
2197 2266 6.404623 GCATGAAAAGTGAATAGTGGCACATA 60.405 38.462 21.41 9.64 44.52 2.29
2198 2267 6.494893 TGAAAAGTGAATAGTGGCACATAC 57.505 37.500 21.41 10.52 44.52 2.39
2199 2268 5.414454 TGAAAAGTGAATAGTGGCACATACC 59.586 40.000 21.41 6.77 44.52 2.73
2200 2269 4.568072 AAGTGAATAGTGGCACATACCA 57.432 40.909 21.41 9.38 44.52 3.25
2240 2309 5.277442 GCTACGTTTACAGTGCAAAAGGTTA 60.277 40.000 17.04 7.32 35.81 2.85
2242 2311 4.395542 ACGTTTACAGTGCAAAAGGTTACA 59.604 37.500 6.70 0.00 31.62 2.41
2252 2321 5.231991 GTGCAAAAGGTTACAGTTGTTGATG 59.768 40.000 0.00 0.00 0.00 3.07
2253 2322 4.744631 GCAAAAGGTTACAGTTGTTGATGG 59.255 41.667 0.00 0.00 0.00 3.51
2254 2323 5.451242 GCAAAAGGTTACAGTTGTTGATGGA 60.451 40.000 0.00 0.00 0.00 3.41
2255 2324 5.767816 AAAGGTTACAGTTGTTGATGGAC 57.232 39.130 0.00 0.00 0.00 4.02
2256 2325 4.431416 AGGTTACAGTTGTTGATGGACA 57.569 40.909 0.00 0.00 0.00 4.02
2257 2326 4.787551 AGGTTACAGTTGTTGATGGACAA 58.212 39.130 0.00 0.00 37.20 3.18
2265 2334 5.473162 CAGTTGTTGATGGACAAGGACAATA 59.527 40.000 0.00 0.00 39.97 1.90
2269 2338 6.484288 TGTTGATGGACAAGGACAATAGATT 58.516 36.000 0.00 0.00 39.30 2.40
2278 2347 6.248433 ACAAGGACAATAGATTTGGTCATGT 58.752 36.000 0.00 0.00 31.39 3.21
2349 2419 4.696479 ATGGTGGAGATAAGTCATGGAC 57.304 45.455 0.00 0.00 0.00 4.02
2354 2424 4.023980 TGGAGATAAGTCATGGACGAGTT 58.976 43.478 0.00 0.00 37.67 3.01
2356 2426 4.098044 GGAGATAAGTCATGGACGAGTTGA 59.902 45.833 0.00 0.00 37.67 3.18
2357 2427 5.000012 AGATAAGTCATGGACGAGTTGAC 58.000 43.478 0.00 0.00 40.00 3.18
2359 2429 1.633774 AGTCATGGACGAGTTGACCT 58.366 50.000 0.44 0.00 40.46 3.85
2361 2431 2.368875 AGTCATGGACGAGTTGACCTTT 59.631 45.455 0.44 0.00 40.46 3.11
2362 2432 2.737252 GTCATGGACGAGTTGACCTTTC 59.263 50.000 0.44 0.00 34.95 2.62
2363 2433 2.632996 TCATGGACGAGTTGACCTTTCT 59.367 45.455 0.44 0.00 33.17 2.52
2364 2434 2.814280 TGGACGAGTTGACCTTTCTC 57.186 50.000 0.44 0.00 33.17 2.87
2366 2436 2.296471 TGGACGAGTTGACCTTTCTCTC 59.704 50.000 0.44 0.00 33.17 3.20
2368 2438 3.366577 GGACGAGTTGACCTTTCTCTCTC 60.367 52.174 0.00 0.00 0.00 3.20
2380 2454 4.580167 CCTTTCTCTCTCGTCTCTCATGAT 59.420 45.833 0.00 0.00 0.00 2.45
2386 2460 6.995091 TCTCTCTCGTCTCTCATGATTGATAA 59.005 38.462 0.00 0.00 0.00 1.75
2387 2461 7.665145 TCTCTCTCGTCTCTCATGATTGATAAT 59.335 37.037 0.00 0.00 0.00 1.28
2388 2462 8.175925 TCTCTCGTCTCTCATGATTGATAATT 57.824 34.615 0.00 0.00 0.00 1.40
2389 2463 8.637099 TCTCTCGTCTCTCATGATTGATAATTT 58.363 33.333 0.00 0.00 0.00 1.82
2390 2464 8.585189 TCTCGTCTCTCATGATTGATAATTTG 57.415 34.615 0.00 0.00 0.00 2.32
2391 2465 8.416329 TCTCGTCTCTCATGATTGATAATTTGA 58.584 33.333 0.00 0.00 0.00 2.69
2392 2466 9.205719 CTCGTCTCTCATGATTGATAATTTGAT 57.794 33.333 0.00 0.00 0.00 2.57
2411 2485 6.765915 TTGATATCCTGATGGACTAGATCG 57.234 41.667 0.00 0.00 46.51 3.69
2412 2486 6.067217 TGATATCCTGATGGACTAGATCGA 57.933 41.667 0.00 0.00 46.51 3.59
2413 2487 6.118852 TGATATCCTGATGGACTAGATCGAG 58.881 44.000 0.00 0.70 46.51 4.04
2414 2488 3.866703 TCCTGATGGACTAGATCGAGT 57.133 47.619 8.35 8.35 37.46 4.18
2415 2489 4.171878 TCCTGATGGACTAGATCGAGTT 57.828 45.455 10.02 0.00 37.46 3.01
2416 2490 4.138290 TCCTGATGGACTAGATCGAGTTC 58.862 47.826 10.02 8.62 37.46 3.01
2417 2491 3.254657 CCTGATGGACTAGATCGAGTTCC 59.745 52.174 11.36 12.71 34.57 3.62
2418 2492 3.885901 CTGATGGACTAGATCGAGTTCCA 59.114 47.826 20.70 20.70 33.80 3.53
2419 2493 3.885901 TGATGGACTAGATCGAGTTCCAG 59.114 47.826 21.92 0.00 33.21 3.86
2420 2494 2.025155 TGGACTAGATCGAGTTCCAGC 58.975 52.381 17.10 3.93 0.00 4.85
2421 2495 2.025155 GGACTAGATCGAGTTCCAGCA 58.975 52.381 10.02 0.00 0.00 4.41
2422 2496 2.427453 GGACTAGATCGAGTTCCAGCAA 59.573 50.000 10.02 0.00 0.00 3.91
2423 2497 3.119101 GGACTAGATCGAGTTCCAGCAAA 60.119 47.826 10.02 0.00 0.00 3.68
2424 2498 4.495422 GACTAGATCGAGTTCCAGCAAAA 58.505 43.478 10.02 0.00 0.00 2.44
2425 2499 4.894784 ACTAGATCGAGTTCCAGCAAAAA 58.105 39.130 2.18 0.00 0.00 1.94
2426 2500 4.932200 ACTAGATCGAGTTCCAGCAAAAAG 59.068 41.667 2.18 0.00 0.00 2.27
2427 2501 3.744660 AGATCGAGTTCCAGCAAAAAGT 58.255 40.909 0.00 0.00 0.00 2.66
2428 2502 4.137543 AGATCGAGTTCCAGCAAAAAGTT 58.862 39.130 0.00 0.00 0.00 2.66
2429 2503 4.580580 AGATCGAGTTCCAGCAAAAAGTTT 59.419 37.500 0.00 0.00 0.00 2.66
2430 2504 4.287238 TCGAGTTCCAGCAAAAAGTTTC 57.713 40.909 0.00 0.00 0.00 2.78
2431 2505 3.035942 CGAGTTCCAGCAAAAAGTTTCG 58.964 45.455 0.00 0.00 0.00 3.46
2432 2506 3.242608 CGAGTTCCAGCAAAAAGTTTCGA 60.243 43.478 0.00 0.00 0.00 3.71
2433 2507 4.668289 GAGTTCCAGCAAAAAGTTTCGAA 58.332 39.130 0.00 0.00 0.00 3.71
2434 2508 5.066968 AGTTCCAGCAAAAAGTTTCGAAA 57.933 34.783 6.47 6.47 0.00 3.46
2435 2509 5.102313 AGTTCCAGCAAAAAGTTTCGAAAG 58.898 37.500 11.66 0.00 0.00 2.62
2436 2510 4.974368 TCCAGCAAAAAGTTTCGAAAGA 57.026 36.364 11.66 0.00 39.20 2.52
2453 2527 8.918961 TTCGAAAGAAGTTGCAGATTTAAAAA 57.081 26.923 0.00 0.00 46.92 1.94
2467 2541 2.511900 AAAAACGGGGAGTGCCGA 59.488 55.556 0.00 0.00 33.83 5.54
2468 2542 1.152922 AAAAACGGGGAGTGCCGAA 60.153 52.632 0.00 0.00 33.83 4.30
2469 2543 0.752376 AAAAACGGGGAGTGCCGAAA 60.752 50.000 0.00 0.00 33.83 3.46
2470 2544 0.752376 AAAACGGGGAGTGCCGAAAA 60.752 50.000 0.00 0.00 33.83 2.29
2471 2545 1.170290 AAACGGGGAGTGCCGAAAAG 61.170 55.000 0.00 0.00 33.83 2.27
2472 2546 2.047213 AACGGGGAGTGCCGAAAAGA 62.047 55.000 0.00 0.00 33.83 2.52
2473 2547 1.302192 CGGGGAGTGCCGAAAAGAA 60.302 57.895 0.00 0.00 33.83 2.52
2474 2548 1.298859 CGGGGAGTGCCGAAAAGAAG 61.299 60.000 0.00 0.00 33.83 2.85
2475 2549 0.250770 GGGGAGTGCCGAAAAGAAGT 60.251 55.000 0.00 0.00 33.83 3.01
2476 2550 0.875059 GGGAGTGCCGAAAAGAAGTG 59.125 55.000 0.00 0.00 33.83 3.16
2477 2551 1.542547 GGGAGTGCCGAAAAGAAGTGA 60.543 52.381 0.00 0.00 33.83 3.41
2478 2552 2.218603 GGAGTGCCGAAAAGAAGTGAA 58.781 47.619 0.00 0.00 0.00 3.18
2479 2553 2.616842 GGAGTGCCGAAAAGAAGTGAAA 59.383 45.455 0.00 0.00 0.00 2.69
2480 2554 3.066203 GGAGTGCCGAAAAGAAGTGAAAA 59.934 43.478 0.00 0.00 0.00 2.29
2481 2555 4.282873 GAGTGCCGAAAAGAAGTGAAAAG 58.717 43.478 0.00 0.00 0.00 2.27
2482 2556 3.945285 AGTGCCGAAAAGAAGTGAAAAGA 59.055 39.130 0.00 0.00 0.00 2.52
2483 2557 4.398044 AGTGCCGAAAAGAAGTGAAAAGAA 59.602 37.500 0.00 0.00 0.00 2.52
2484 2558 5.067805 AGTGCCGAAAAGAAGTGAAAAGAAT 59.932 36.000 0.00 0.00 0.00 2.40
2485 2559 5.173854 GTGCCGAAAAGAAGTGAAAAGAATG 59.826 40.000 0.00 0.00 0.00 2.67
2486 2560 4.148871 GCCGAAAAGAAGTGAAAAGAATGC 59.851 41.667 0.00 0.00 0.00 3.56
2487 2561 5.280945 CCGAAAAGAAGTGAAAAGAATGCA 58.719 37.500 0.00 0.00 0.00 3.96
2488 2562 5.922544 CCGAAAAGAAGTGAAAAGAATGCAT 59.077 36.000 0.00 0.00 0.00 3.96
2489 2563 6.088616 CCGAAAAGAAGTGAAAAGAATGCATC 59.911 38.462 0.00 0.00 0.00 3.91
2490 2564 6.088616 CGAAAAGAAGTGAAAAGAATGCATCC 59.911 38.462 0.00 0.00 0.00 3.51
2491 2565 6.409524 AAAGAAGTGAAAAGAATGCATCCA 57.590 33.333 0.00 0.00 0.00 3.41
2492 2566 6.600882 AAGAAGTGAAAAGAATGCATCCAT 57.399 33.333 0.00 0.00 0.00 3.41
2493 2567 6.600882 AGAAGTGAAAAGAATGCATCCATT 57.399 33.333 0.00 0.00 44.11 3.16
2494 2568 7.001099 AGAAGTGAAAAGAATGCATCCATTT 57.999 32.000 0.00 1.23 41.60 2.32
2495 2569 7.447594 AGAAGTGAAAAGAATGCATCCATTTT 58.552 30.769 13.30 13.30 41.60 1.82
2496 2570 7.935210 AGAAGTGAAAAGAATGCATCCATTTTT 59.065 29.630 0.00 4.99 41.60 1.94
2534 2608 5.456548 TGCATCCATGGTTGCATAATTAG 57.543 39.130 35.92 6.52 43.30 1.73
2535 2609 4.240096 GCATCCATGGTTGCATAATTAGC 58.760 43.478 33.36 10.68 39.74 3.09
2536 2610 4.262121 GCATCCATGGTTGCATAATTAGCA 60.262 41.667 33.36 2.83 39.74 3.49
2545 2619 5.596836 TTGCATAATTAGCAAGGAAAGGG 57.403 39.130 14.44 0.00 46.13 3.95
2546 2620 4.865905 TGCATAATTAGCAAGGAAAGGGA 58.134 39.130 7.01 0.00 39.39 4.20
2547 2621 4.889409 TGCATAATTAGCAAGGAAAGGGAG 59.111 41.667 7.01 0.00 39.39 4.30
2548 2622 4.889995 GCATAATTAGCAAGGAAAGGGAGT 59.110 41.667 0.00 0.00 0.00 3.85
2549 2623 6.062095 GCATAATTAGCAAGGAAAGGGAGTA 58.938 40.000 0.00 0.00 0.00 2.59
2550 2624 6.717084 GCATAATTAGCAAGGAAAGGGAGTAT 59.283 38.462 0.00 0.00 0.00 2.12
2551 2625 7.231519 GCATAATTAGCAAGGAAAGGGAGTATT 59.768 37.037 0.00 0.00 0.00 1.89
2552 2626 8.787852 CATAATTAGCAAGGAAAGGGAGTATTC 58.212 37.037 0.00 0.00 0.00 1.75
2553 2627 3.653835 AGCAAGGAAAGGGAGTATTCC 57.346 47.619 0.00 0.00 44.45 3.01
2565 2639 5.286267 GGGAGTATTCCTAATCAAACGGA 57.714 43.478 4.04 0.00 43.49 4.69
2566 2640 5.298347 GGGAGTATTCCTAATCAAACGGAG 58.702 45.833 4.04 0.00 43.49 4.63
2567 2641 5.070047 GGGAGTATTCCTAATCAAACGGAGA 59.930 44.000 4.04 0.00 43.49 3.71
2568 2642 6.407752 GGGAGTATTCCTAATCAAACGGAGAA 60.408 42.308 4.04 0.00 43.49 2.87
2569 2643 6.702282 GGAGTATTCCTAATCAAACGGAGAAG 59.298 42.308 0.00 0.00 40.58 2.85
2570 2644 6.049790 AGTATTCCTAATCAAACGGAGAAGC 58.950 40.000 0.00 0.00 0.00 3.86
2571 2645 3.973206 TCCTAATCAAACGGAGAAGCA 57.027 42.857 0.00 0.00 0.00 3.91
2572 2646 4.487714 TCCTAATCAAACGGAGAAGCAT 57.512 40.909 0.00 0.00 0.00 3.79
2573 2647 4.191544 TCCTAATCAAACGGAGAAGCATG 58.808 43.478 0.00 0.00 0.00 4.06
2574 2648 3.941483 CCTAATCAAACGGAGAAGCATGT 59.059 43.478 0.00 0.00 0.00 3.21
2575 2649 3.837213 AATCAAACGGAGAAGCATGTG 57.163 42.857 0.00 0.00 0.00 3.21
2576 2650 2.542020 TCAAACGGAGAAGCATGTGA 57.458 45.000 0.00 0.00 0.00 3.58
2577 2651 2.416747 TCAAACGGAGAAGCATGTGAG 58.583 47.619 0.00 0.00 0.00 3.51
2578 2652 2.037121 TCAAACGGAGAAGCATGTGAGA 59.963 45.455 0.00 0.00 0.00 3.27
2579 2653 2.376808 AACGGAGAAGCATGTGAGAG 57.623 50.000 0.00 0.00 0.00 3.20
2580 2654 0.108424 ACGGAGAAGCATGTGAGAGC 60.108 55.000 0.00 0.00 0.00 4.09
2581 2655 0.175302 CGGAGAAGCATGTGAGAGCT 59.825 55.000 0.00 0.00 44.31 4.09
2582 2656 1.406898 CGGAGAAGCATGTGAGAGCTA 59.593 52.381 0.00 0.00 40.90 3.32
2583 2657 2.543445 CGGAGAAGCATGTGAGAGCTAG 60.543 54.545 0.00 0.00 40.90 3.42
2584 2658 2.224018 GGAGAAGCATGTGAGAGCTAGG 60.224 54.545 0.00 0.00 40.90 3.02
2585 2659 1.138661 AGAAGCATGTGAGAGCTAGGC 59.861 52.381 0.00 0.00 40.90 3.93
2586 2660 0.907486 AAGCATGTGAGAGCTAGGCA 59.093 50.000 0.00 0.00 40.90 4.75
2587 2661 0.464870 AGCATGTGAGAGCTAGGCAG 59.535 55.000 0.00 0.00 39.78 4.85
2588 2662 0.532417 GCATGTGAGAGCTAGGCAGG 60.532 60.000 0.00 0.00 0.00 4.85
2589 2663 0.106335 CATGTGAGAGCTAGGCAGGG 59.894 60.000 0.00 0.00 0.00 4.45
2590 2664 0.326048 ATGTGAGAGCTAGGCAGGGT 60.326 55.000 0.00 0.00 0.00 4.34
2591 2665 1.260538 TGTGAGAGCTAGGCAGGGTG 61.261 60.000 0.00 0.00 0.00 4.61
2592 2666 2.362369 TGAGAGCTAGGCAGGGTGC 61.362 63.158 0.00 0.00 44.08 5.01
2605 2679 3.688159 GGTGCCTGCCCAAAGCTG 61.688 66.667 0.00 0.00 44.23 4.24
2610 2684 4.828409 CTGCCCAAAGCTGGAGAA 57.172 55.556 0.00 0.00 46.92 2.87
2611 2685 3.040965 CTGCCCAAAGCTGGAGAAA 57.959 52.632 0.00 0.00 46.92 2.52
2612 2686 1.553706 CTGCCCAAAGCTGGAGAAAT 58.446 50.000 0.00 0.00 46.92 2.17
2613 2687 1.475682 CTGCCCAAAGCTGGAGAAATC 59.524 52.381 0.00 0.00 46.92 2.17
2614 2688 1.076024 TGCCCAAAGCTGGAGAAATCT 59.924 47.619 0.00 0.00 46.92 2.40
2615 2689 1.747924 GCCCAAAGCTGGAGAAATCTC 59.252 52.381 1.68 1.68 46.92 2.75
2616 2690 2.881403 GCCCAAAGCTGGAGAAATCTCA 60.881 50.000 12.21 0.00 46.92 3.27
2617 2691 3.015327 CCCAAAGCTGGAGAAATCTCAG 58.985 50.000 12.21 8.57 46.92 3.35
2618 2692 3.015327 CCAAAGCTGGAGAAATCTCAGG 58.985 50.000 12.21 5.40 46.92 3.86
2619 2693 3.560882 CCAAAGCTGGAGAAATCTCAGGT 60.561 47.826 12.21 9.78 46.92 4.00
2620 2694 4.323792 CCAAAGCTGGAGAAATCTCAGGTA 60.324 45.833 12.21 0.00 46.92 3.08
2621 2695 5.248640 CAAAGCTGGAGAAATCTCAGGTAA 58.751 41.667 12.21 0.00 44.60 2.85
2622 2696 5.505181 AAGCTGGAGAAATCTCAGGTAAA 57.495 39.130 12.21 0.00 44.60 2.01
2623 2697 4.837972 AGCTGGAGAAATCTCAGGTAAAC 58.162 43.478 12.21 0.00 44.60 2.01
2624 2698 3.942115 GCTGGAGAAATCTCAGGTAAACC 59.058 47.826 12.21 0.00 44.60 3.27
2626 2700 5.804771 GCTGGAGAAATCTCAGGTAAACCTT 60.805 44.000 12.21 0.00 46.65 3.50
2627 2701 6.200878 TGGAGAAATCTCAGGTAAACCTTT 57.799 37.500 12.21 0.00 46.65 3.11
2628 2702 6.610830 TGGAGAAATCTCAGGTAAACCTTTT 58.389 36.000 12.21 0.00 46.65 2.27
2629 2703 7.066781 TGGAGAAATCTCAGGTAAACCTTTTT 58.933 34.615 12.21 0.00 46.65 1.94
2651 2725 7.452880 TTTTTCTTGAGAGAGAGAGAGAGAG 57.547 40.000 0.00 0.00 32.44 3.20
2652 2726 6.373005 TTTCTTGAGAGAGAGAGAGAGAGA 57.627 41.667 0.00 0.00 32.44 3.10
2653 2727 5.604758 TCTTGAGAGAGAGAGAGAGAGAG 57.395 47.826 0.00 0.00 0.00 3.20
2654 2728 5.272402 TCTTGAGAGAGAGAGAGAGAGAGA 58.728 45.833 0.00 0.00 0.00 3.10
2655 2729 5.362143 TCTTGAGAGAGAGAGAGAGAGAGAG 59.638 48.000 0.00 0.00 0.00 3.20
2656 2730 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
2657 2731 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2658 2732 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2659 2733 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2660 2734 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2661 2735 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2662 2736 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2663 2737 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2664 2738 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2665 2739 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2666 2740 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2667 2741 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2668 2742 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2669 2743 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2670 2744 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2671 2745 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2672 2746 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2673 2747 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2674 2748 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2675 2749 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2676 2750 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2677 2751 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2678 2752 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2679 2753 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2680 2754 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2681 2755 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2682 2756 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2683 2757 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2684 2758 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2685 2759 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2686 2760 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2687 2761 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2688 2762 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2689 2763 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2690 2764 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2691 2765 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2692 2766 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2693 2767 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2694 2768 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2695 2769 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2696 2770 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2697 2771 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2698 2772 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2699 2773 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2700 2774 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2701 2775 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2702 2776 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2703 2777 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2704 2778 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2705 2779 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2706 2780 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2707 2781 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2708 2782 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2709 2783 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2710 2784 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2711 2785 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2712 2786 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2713 2787 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2714 2788 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2715 2789 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2716 2790 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2717 2791 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
2718 2792 5.774690 AGAGAGAGAGAGAGAGAGAGAGATC 59.225 48.000 0.00 0.00 0.00 2.75
2719 2793 5.714863 AGAGAGAGAGAGAGAGAGAGATCT 58.285 45.833 0.00 0.00 0.00 2.75
2720 2794 6.857848 AGAGAGAGAGAGAGAGAGAGATCTA 58.142 44.000 0.00 0.00 0.00 1.98
2721 2795 7.301420 AGAGAGAGAGAGAGAGAGAGATCTAA 58.699 42.308 0.00 0.00 0.00 2.10
2722 2796 7.451255 AGAGAGAGAGAGAGAGAGAGATCTAAG 59.549 44.444 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
362 371 8.213679 AGAAACTGCTGCTAATATTAATCCTGA 58.786 33.333 0.00 0.00 0.00 3.86
363 372 8.288208 CAGAAACTGCTGCTAATATTAATCCTG 58.712 37.037 0.00 0.00 0.00 3.86
419 447 2.749441 GACAGCCCCTGCAAGAGC 60.749 66.667 0.00 0.00 41.13 4.09
598 626 4.229582 AGGGGAGGTGCTCATTTATAAACA 59.770 41.667 0.00 0.00 31.08 2.83
676 710 2.605366 GACAAGCAAGATAGAACGGAGC 59.395 50.000 0.00 0.00 0.00 4.70
715 749 2.020720 CTCTTCAGCTCGCTCCTTCTA 58.979 52.381 0.00 0.00 0.00 2.10
727 761 5.122396 GTCTATCTAGCTAGCTCTCTTCAGC 59.878 48.000 23.26 3.25 39.99 4.26
728 762 6.230472 TGTCTATCTAGCTAGCTCTCTTCAG 58.770 44.000 23.26 12.21 0.00 3.02
729 763 6.181206 TGTCTATCTAGCTAGCTCTCTTCA 57.819 41.667 23.26 10.28 0.00 3.02
730 764 6.149474 CCTTGTCTATCTAGCTAGCTCTCTTC 59.851 46.154 23.26 7.79 0.00 2.87
731 765 6.003950 CCTTGTCTATCTAGCTAGCTCTCTT 58.996 44.000 23.26 7.55 0.00 2.85
732 766 5.514834 CCCTTGTCTATCTAGCTAGCTCTCT 60.515 48.000 23.26 9.26 0.00 3.10
733 767 4.700213 CCCTTGTCTATCTAGCTAGCTCTC 59.300 50.000 23.26 5.72 0.00 3.20
734 768 4.352595 TCCCTTGTCTATCTAGCTAGCTCT 59.647 45.833 23.26 10.02 0.00 4.09
735 769 4.658063 TCCCTTGTCTATCTAGCTAGCTC 58.342 47.826 23.26 5.36 0.00 4.09
736 770 4.352595 TCTCCCTTGTCTATCTAGCTAGCT 59.647 45.833 23.12 23.12 0.00 3.32
737 771 4.658063 TCTCCCTTGTCTATCTAGCTAGC 58.342 47.826 16.35 6.62 0.00 3.42
738 772 5.013704 TCCTCTCCCTTGTCTATCTAGCTAG 59.986 48.000 15.01 15.01 0.00 3.42
739 773 4.914581 TCCTCTCCCTTGTCTATCTAGCTA 59.085 45.833 0.00 0.00 0.00 3.32
779 814 6.462487 CCACAGAGAAGTAACTGACCTGTAAA 60.462 42.308 0.00 0.00 37.54 2.01
849 884 3.242867 TGGTGAACATCCTCTGACTCTT 58.757 45.455 0.00 0.00 0.00 2.85
861 896 4.893524 AGCATGATTCATGATGGTGAACAT 59.106 37.500 26.94 0.00 43.81 2.71
904 939 7.126421 ACTTCTAAGCATCCATCTAAAGGAAGA 59.874 37.037 0.00 0.00 38.93 2.87
912 947 8.862325 TTCAAAAACTTCTAAGCATCCATCTA 57.138 30.769 0.00 0.00 0.00 1.98
945 984 6.480763 TGCTGAAATGTGGAAGAACCTATAA 58.519 36.000 0.00 0.00 39.86 0.98
1009 1049 2.296752 CCATGTCACATTGCCTCACAAA 59.703 45.455 0.00 0.00 42.86 2.83
1059 1099 0.687354 GTTGCCTGAAGGTCTCCTCA 59.313 55.000 0.00 0.00 37.57 3.86
1104 1144 5.918608 TGCTATATCTGGTGAAGAAGAACC 58.081 41.667 0.00 0.00 38.79 3.62
1365 1412 1.739562 CGTCAGTTCCAGCTCAGCC 60.740 63.158 0.00 0.00 0.00 4.85
1368 1415 3.459823 AGCGTCAGTTCCAGCTCA 58.540 55.556 0.00 0.00 34.48 4.26
1419 1466 1.833434 TAACGTTGTTCTTGCGGGCG 61.833 55.000 11.99 0.00 0.00 6.13
1420 1467 0.110373 CTAACGTTGTTCTTGCGGGC 60.110 55.000 11.99 0.00 0.00 6.13
1485 1532 2.125512 CAGTCGGAAGCGAAGGGG 60.126 66.667 0.00 0.00 0.00 4.79
1805 1855 6.175712 ACACAAGCTACTAAGTAGTACGAC 57.824 41.667 0.00 0.00 38.30 4.34
1844 1894 7.863901 AAGATAAGGAATACTCATGGCTACT 57.136 36.000 0.00 0.00 0.00 2.57
1845 1895 8.910351 AAAAGATAAGGAATACTCATGGCTAC 57.090 34.615 0.00 0.00 0.00 3.58
1846 1896 8.938883 AGAAAAGATAAGGAATACTCATGGCTA 58.061 33.333 0.00 0.00 0.00 3.93
1847 1897 7.810260 AGAAAAGATAAGGAATACTCATGGCT 58.190 34.615 0.00 0.00 0.00 4.75
1848 1898 8.457238 AAGAAAAGATAAGGAATACTCATGGC 57.543 34.615 0.00 0.00 0.00 4.40
1851 1901 9.634021 GGGAAAGAAAAGATAAGGAATACTCAT 57.366 33.333 0.00 0.00 0.00 2.90
1852 1902 8.836735 AGGGAAAGAAAAGATAAGGAATACTCA 58.163 33.333 0.00 0.00 0.00 3.41
1877 1930 5.174398 CACACATCTAAGCAACAGCAAAAAG 59.826 40.000 0.00 0.00 0.00 2.27
1925 1978 1.583054 GATCGGAATTCAGAACCCGG 58.417 55.000 19.96 0.00 42.03 5.73
1955 2008 4.637483 TGATTAACCAATTAGCAGCAGC 57.363 40.909 0.00 0.00 42.56 5.25
1956 2009 6.183360 TGTCATGATTAACCAATTAGCAGCAG 60.183 38.462 0.00 0.00 0.00 4.24
1957 2010 5.651576 TGTCATGATTAACCAATTAGCAGCA 59.348 36.000 0.00 0.00 0.00 4.41
1969 2022 6.020121 GCATGCACTCATTTGTCATGATTAAC 60.020 38.462 14.21 0.00 37.34 2.01
2023 2076 3.588955 TCATCAATTCACACCAGTCTCG 58.411 45.455 0.00 0.00 0.00 4.04
2136 2193 2.036475 TCTCTGCACTTCTGTTCCTCAC 59.964 50.000 0.00 0.00 0.00 3.51
2137 2194 2.319844 TCTCTGCACTTCTGTTCCTCA 58.680 47.619 0.00 0.00 0.00 3.86
2165 2234 8.680903 CCACTATTCACTTTTCATGCTTTCTAT 58.319 33.333 0.00 0.00 0.00 1.98
2196 2265 2.693074 GCCTCCTTCTCCCTATGTGGTA 60.693 54.545 0.00 0.00 0.00 3.25
2197 2266 1.972207 GCCTCCTTCTCCCTATGTGGT 60.972 57.143 0.00 0.00 0.00 4.16
2198 2267 0.761802 GCCTCCTTCTCCCTATGTGG 59.238 60.000 0.00 0.00 0.00 4.17
2199 2268 1.799933 AGCCTCCTTCTCCCTATGTG 58.200 55.000 0.00 0.00 0.00 3.21
2200 2269 2.753507 CGTAGCCTCCTTCTCCCTATGT 60.754 54.545 0.00 0.00 0.00 2.29
2201 2270 1.889829 CGTAGCCTCCTTCTCCCTATG 59.110 57.143 0.00 0.00 0.00 2.23
2202 2271 1.499870 ACGTAGCCTCCTTCTCCCTAT 59.500 52.381 0.00 0.00 0.00 2.57
2240 2309 3.214328 GTCCTTGTCCATCAACAACTGT 58.786 45.455 0.00 0.00 35.39 3.55
2242 2311 3.576078 TGTCCTTGTCCATCAACAACT 57.424 42.857 0.00 0.00 35.39 3.16
2252 2321 5.253330 TGACCAAATCTATTGTCCTTGTCC 58.747 41.667 0.00 0.00 0.00 4.02
2253 2322 6.375455 ACATGACCAAATCTATTGTCCTTGTC 59.625 38.462 0.00 0.00 0.00 3.18
2254 2323 6.248433 ACATGACCAAATCTATTGTCCTTGT 58.752 36.000 0.00 0.00 0.00 3.16
2255 2324 6.764308 ACATGACCAAATCTATTGTCCTTG 57.236 37.500 0.00 0.00 0.00 3.61
2256 2325 7.861629 TCTACATGACCAAATCTATTGTCCTT 58.138 34.615 0.00 0.00 0.00 3.36
2257 2326 7.126421 ACTCTACATGACCAAATCTATTGTCCT 59.874 37.037 0.00 0.00 0.00 3.85
2265 2334 4.910195 TGCAACTCTACATGACCAAATCT 58.090 39.130 0.00 0.00 0.00 2.40
2269 2338 7.013750 TGTTAATTTGCAACTCTACATGACCAA 59.986 33.333 0.00 0.00 0.00 3.67
2278 2347 8.801299 TGAATTCCATGTTAATTTGCAACTCTA 58.199 29.630 0.00 0.00 0.00 2.43
2349 2419 2.226912 ACGAGAGAGAAAGGTCAACTCG 59.773 50.000 0.00 0.00 44.02 4.18
2354 2424 3.244596 TGAGAGACGAGAGAGAAAGGTCA 60.245 47.826 0.00 0.00 0.00 4.02
2356 2426 3.426787 TGAGAGACGAGAGAGAAAGGT 57.573 47.619 0.00 0.00 0.00 3.50
2357 2427 3.944650 TCATGAGAGACGAGAGAGAAAGG 59.055 47.826 0.00 0.00 0.00 3.11
2359 2429 5.649831 TCAATCATGAGAGACGAGAGAGAAA 59.350 40.000 0.09 0.00 0.00 2.52
2361 2431 4.775236 TCAATCATGAGAGACGAGAGAGA 58.225 43.478 0.09 0.00 0.00 3.10
2362 2432 5.694231 ATCAATCATGAGAGACGAGAGAG 57.306 43.478 0.09 0.00 39.39 3.20
2363 2433 7.757941 ATTATCAATCATGAGAGACGAGAGA 57.242 36.000 0.09 0.00 39.39 3.10
2364 2434 8.701540 CAAATTATCAATCATGAGAGACGAGAG 58.298 37.037 0.09 0.00 39.39 3.20
2366 2436 8.585189 TCAAATTATCAATCATGAGAGACGAG 57.415 34.615 0.09 0.00 39.39 4.18
2394 2468 3.866703 ACTCGATCTAGTCCATCAGGA 57.133 47.619 0.00 0.00 43.21 3.86
2395 2469 3.254657 GGAACTCGATCTAGTCCATCAGG 59.745 52.174 0.00 0.00 0.00 3.86
2396 2470 3.885901 TGGAACTCGATCTAGTCCATCAG 59.114 47.826 11.82 0.00 0.00 2.90
2397 2471 3.885901 CTGGAACTCGATCTAGTCCATCA 59.114 47.826 14.56 5.80 31.03 3.07
2398 2472 3.305064 GCTGGAACTCGATCTAGTCCATC 60.305 52.174 14.56 9.72 31.03 3.51
2399 2473 2.625790 GCTGGAACTCGATCTAGTCCAT 59.374 50.000 14.56 0.00 31.03 3.41
2400 2474 2.025155 GCTGGAACTCGATCTAGTCCA 58.975 52.381 13.89 13.89 31.15 4.02
2401 2475 2.025155 TGCTGGAACTCGATCTAGTCC 58.975 52.381 0.00 4.95 31.15 3.85
2402 2476 3.784701 TTGCTGGAACTCGATCTAGTC 57.215 47.619 0.00 0.00 31.15 2.59
2403 2477 4.537135 TTTTGCTGGAACTCGATCTAGT 57.463 40.909 0.00 0.00 31.15 2.57
2404 2478 4.932200 ACTTTTTGCTGGAACTCGATCTAG 59.068 41.667 0.00 0.00 0.00 2.43
2405 2479 4.894784 ACTTTTTGCTGGAACTCGATCTA 58.105 39.130 0.00 0.00 0.00 1.98
2406 2480 3.744660 ACTTTTTGCTGGAACTCGATCT 58.255 40.909 0.00 0.00 0.00 2.75
2407 2481 4.489679 AACTTTTTGCTGGAACTCGATC 57.510 40.909 0.00 0.00 0.00 3.69
2408 2482 4.554723 CGAAACTTTTTGCTGGAACTCGAT 60.555 41.667 0.00 0.00 0.00 3.59
2409 2483 3.242608 CGAAACTTTTTGCTGGAACTCGA 60.243 43.478 0.00 0.00 0.00 4.04
2410 2484 3.035942 CGAAACTTTTTGCTGGAACTCG 58.964 45.455 0.00 0.00 0.00 4.18
2411 2485 4.287238 TCGAAACTTTTTGCTGGAACTC 57.713 40.909 0.00 0.00 0.00 3.01
2412 2486 4.712122 TTCGAAACTTTTTGCTGGAACT 57.288 36.364 0.00 0.00 0.00 3.01
2413 2487 5.099575 TCTTTCGAAACTTTTTGCTGGAAC 58.900 37.500 6.47 0.00 0.00 3.62
2414 2488 5.317733 TCTTTCGAAACTTTTTGCTGGAA 57.682 34.783 6.47 0.00 0.00 3.53
2415 2489 4.974368 TCTTTCGAAACTTTTTGCTGGA 57.026 36.364 6.47 0.00 0.00 3.86
2416 2490 5.102313 ACTTCTTTCGAAACTTTTTGCTGG 58.898 37.500 6.47 0.00 0.00 4.85
2417 2491 6.460987 CAACTTCTTTCGAAACTTTTTGCTG 58.539 36.000 6.47 0.00 0.00 4.41
2418 2492 5.062183 GCAACTTCTTTCGAAACTTTTTGCT 59.938 36.000 22.87 0.59 0.00 3.91
2419 2493 5.164002 TGCAACTTCTTTCGAAACTTTTTGC 60.164 36.000 23.14 23.14 0.00 3.68
2420 2494 6.307800 TCTGCAACTTCTTTCGAAACTTTTTG 59.692 34.615 6.47 9.35 0.00 2.44
2421 2495 6.386654 TCTGCAACTTCTTTCGAAACTTTTT 58.613 32.000 6.47 0.00 0.00 1.94
2422 2496 5.949735 TCTGCAACTTCTTTCGAAACTTTT 58.050 33.333 6.47 0.00 0.00 2.27
2423 2497 5.560966 TCTGCAACTTCTTTCGAAACTTT 57.439 34.783 6.47 0.00 0.00 2.66
2424 2498 5.757850 ATCTGCAACTTCTTTCGAAACTT 57.242 34.783 6.47 0.00 0.00 2.66
2425 2499 5.757850 AATCTGCAACTTCTTTCGAAACT 57.242 34.783 6.47 0.00 0.00 2.66
2426 2500 7.908193 TTAAATCTGCAACTTCTTTCGAAAC 57.092 32.000 6.47 0.00 0.00 2.78
2427 2501 8.918961 TTTTAAATCTGCAACTTCTTTCGAAA 57.081 26.923 10.71 10.71 0.00 3.46
2428 2502 8.918961 TTTTTAAATCTGCAACTTCTTTCGAA 57.081 26.923 0.00 0.00 0.00 3.71
2456 2530 0.250770 ACTTCTTTTCGGCACTCCCC 60.251 55.000 0.00 0.00 0.00 4.81
2457 2531 0.875059 CACTTCTTTTCGGCACTCCC 59.125 55.000 0.00 0.00 0.00 4.30
2458 2532 1.878953 TCACTTCTTTTCGGCACTCC 58.121 50.000 0.00 0.00 0.00 3.85
2459 2533 3.963383 TTTCACTTCTTTTCGGCACTC 57.037 42.857 0.00 0.00 0.00 3.51
2460 2534 3.945285 TCTTTTCACTTCTTTTCGGCACT 59.055 39.130 0.00 0.00 0.00 4.40
2461 2535 4.287238 TCTTTTCACTTCTTTTCGGCAC 57.713 40.909 0.00 0.00 0.00 5.01
2462 2536 4.974368 TTCTTTTCACTTCTTTTCGGCA 57.026 36.364 0.00 0.00 0.00 5.69
2463 2537 4.148871 GCATTCTTTTCACTTCTTTTCGGC 59.851 41.667 0.00 0.00 0.00 5.54
2464 2538 5.280945 TGCATTCTTTTCACTTCTTTTCGG 58.719 37.500 0.00 0.00 0.00 4.30
2465 2539 6.088616 GGATGCATTCTTTTCACTTCTTTTCG 59.911 38.462 0.00 0.00 0.00 3.46
2466 2540 6.925165 TGGATGCATTCTTTTCACTTCTTTTC 59.075 34.615 6.53 0.00 0.00 2.29
2467 2541 6.819284 TGGATGCATTCTTTTCACTTCTTTT 58.181 32.000 6.53 0.00 0.00 2.27
2468 2542 6.409524 TGGATGCATTCTTTTCACTTCTTT 57.590 33.333 6.53 0.00 0.00 2.52
2469 2543 6.600882 ATGGATGCATTCTTTTCACTTCTT 57.399 33.333 6.53 0.00 0.00 2.52
2470 2544 6.600882 AATGGATGCATTCTTTTCACTTCT 57.399 33.333 6.63 0.00 0.00 2.85
2471 2545 7.662604 AAAATGGATGCATTCTTTTCACTTC 57.337 32.000 16.84 0.00 0.00 3.01
2507 2581 3.420300 TGCAACCATGGATGCATTTTT 57.580 38.095 37.47 9.72 46.30 1.94
2513 2587 4.240096 GCTAATTATGCAACCATGGATGC 58.760 43.478 33.56 33.56 42.97 3.91
2514 2588 5.456548 TGCTAATTATGCAACCATGGATG 57.543 39.130 21.47 19.16 38.19 3.51
2515 2589 5.011329 CCTTGCTAATTATGCAACCATGGAT 59.989 40.000 21.47 2.68 44.24 3.41
2516 2590 4.341806 CCTTGCTAATTATGCAACCATGGA 59.658 41.667 21.47 0.00 44.24 3.41
2517 2591 4.341806 TCCTTGCTAATTATGCAACCATGG 59.658 41.667 11.19 11.19 44.24 3.66
2518 2592 5.518848 TCCTTGCTAATTATGCAACCATG 57.481 39.130 14.44 8.08 44.24 3.66
2519 2593 6.407299 CCTTTCCTTGCTAATTATGCAACCAT 60.407 38.462 14.44 0.00 44.24 3.55
2520 2594 5.105392 CCTTTCCTTGCTAATTATGCAACCA 60.105 40.000 14.44 5.54 44.24 3.67
2521 2595 5.351458 CCTTTCCTTGCTAATTATGCAACC 58.649 41.667 14.44 0.00 44.24 3.77
2522 2596 5.127031 TCCCTTTCCTTGCTAATTATGCAAC 59.873 40.000 14.44 0.00 44.24 4.17
2523 2597 5.268387 TCCCTTTCCTTGCTAATTATGCAA 58.732 37.500 16.36 16.36 46.48 4.08
2524 2598 4.865905 TCCCTTTCCTTGCTAATTATGCA 58.134 39.130 0.00 0.00 38.80 3.96
2525 2599 4.889995 ACTCCCTTTCCTTGCTAATTATGC 59.110 41.667 0.00 0.00 0.00 3.14
2526 2600 8.697507 AATACTCCCTTTCCTTGCTAATTATG 57.302 34.615 0.00 0.00 0.00 1.90
2527 2601 7.945109 GGAATACTCCCTTTCCTTGCTAATTAT 59.055 37.037 0.00 0.00 38.68 1.28
2528 2602 7.287810 GGAATACTCCCTTTCCTTGCTAATTA 58.712 38.462 0.00 0.00 38.68 1.40
2529 2603 6.129874 GGAATACTCCCTTTCCTTGCTAATT 58.870 40.000 0.00 0.00 38.68 1.40
2530 2604 5.696030 GGAATACTCCCTTTCCTTGCTAAT 58.304 41.667 0.00 0.00 38.68 1.73
2531 2605 5.112129 GGAATACTCCCTTTCCTTGCTAA 57.888 43.478 0.00 0.00 38.68 3.09
2532 2606 4.772886 GGAATACTCCCTTTCCTTGCTA 57.227 45.455 0.00 0.00 38.68 3.49
2533 2607 3.653835 GGAATACTCCCTTTCCTTGCT 57.346 47.619 0.00 0.00 38.68 3.91
2538 2612 6.260271 CGTTTGATTAGGAATACTCCCTTTCC 59.740 42.308 0.00 0.00 43.64 3.13
2539 2613 6.260271 CCGTTTGATTAGGAATACTCCCTTTC 59.740 42.308 0.00 0.00 43.64 2.62
2540 2614 6.069847 TCCGTTTGATTAGGAATACTCCCTTT 60.070 38.462 0.00 0.00 43.64 3.11
2541 2615 5.427481 TCCGTTTGATTAGGAATACTCCCTT 59.573 40.000 0.00 0.00 43.64 3.95
2542 2616 4.966805 TCCGTTTGATTAGGAATACTCCCT 59.033 41.667 0.00 0.00 43.64 4.20
2543 2617 5.070047 TCTCCGTTTGATTAGGAATACTCCC 59.930 44.000 0.00 0.00 43.64 4.30
2544 2618 6.158023 TCTCCGTTTGATTAGGAATACTCC 57.842 41.667 0.00 0.00 42.81 3.85
2545 2619 6.201234 GCTTCTCCGTTTGATTAGGAATACTC 59.799 42.308 0.00 0.00 33.10 2.59
2546 2620 6.049790 GCTTCTCCGTTTGATTAGGAATACT 58.950 40.000 0.00 0.00 33.10 2.12
2547 2621 5.815740 TGCTTCTCCGTTTGATTAGGAATAC 59.184 40.000 0.00 0.00 33.10 1.89
2548 2622 5.984725 TGCTTCTCCGTTTGATTAGGAATA 58.015 37.500 0.00 0.00 33.10 1.75
2549 2623 4.843728 TGCTTCTCCGTTTGATTAGGAAT 58.156 39.130 0.00 0.00 33.10 3.01
2550 2624 4.280436 TGCTTCTCCGTTTGATTAGGAA 57.720 40.909 0.00 0.00 33.10 3.36
2551 2625 3.973206 TGCTTCTCCGTTTGATTAGGA 57.027 42.857 0.00 0.00 0.00 2.94
2552 2626 3.941483 ACATGCTTCTCCGTTTGATTAGG 59.059 43.478 0.00 0.00 0.00 2.69
2553 2627 4.631377 TCACATGCTTCTCCGTTTGATTAG 59.369 41.667 0.00 0.00 0.00 1.73
2554 2628 4.574892 TCACATGCTTCTCCGTTTGATTA 58.425 39.130 0.00 0.00 0.00 1.75
2555 2629 3.411446 TCACATGCTTCTCCGTTTGATT 58.589 40.909 0.00 0.00 0.00 2.57
2556 2630 3.005554 CTCACATGCTTCTCCGTTTGAT 58.994 45.455 0.00 0.00 0.00 2.57
2557 2631 2.037121 TCTCACATGCTTCTCCGTTTGA 59.963 45.455 0.00 0.00 0.00 2.69
2558 2632 2.414481 CTCTCACATGCTTCTCCGTTTG 59.586 50.000 0.00 0.00 0.00 2.93
2559 2633 2.693069 CTCTCACATGCTTCTCCGTTT 58.307 47.619 0.00 0.00 0.00 3.60
2560 2634 1.674221 GCTCTCACATGCTTCTCCGTT 60.674 52.381 0.00 0.00 0.00 4.44
2561 2635 0.108424 GCTCTCACATGCTTCTCCGT 60.108 55.000 0.00 0.00 0.00 4.69
2562 2636 0.175302 AGCTCTCACATGCTTCTCCG 59.825 55.000 0.00 0.00 35.86 4.63
2563 2637 2.224018 CCTAGCTCTCACATGCTTCTCC 60.224 54.545 0.00 0.00 40.35 3.71
2564 2638 2.802774 GCCTAGCTCTCACATGCTTCTC 60.803 54.545 0.00 0.00 40.35 2.87
2565 2639 1.138661 GCCTAGCTCTCACATGCTTCT 59.861 52.381 0.00 0.00 40.35 2.85
2566 2640 1.134580 TGCCTAGCTCTCACATGCTTC 60.135 52.381 0.00 0.00 40.35 3.86
2567 2641 0.907486 TGCCTAGCTCTCACATGCTT 59.093 50.000 0.00 0.00 40.35 3.91
2568 2642 0.464870 CTGCCTAGCTCTCACATGCT 59.535 55.000 0.00 0.00 42.67 3.79
2569 2643 0.532417 CCTGCCTAGCTCTCACATGC 60.532 60.000 0.00 0.00 0.00 4.06
2570 2644 0.106335 CCCTGCCTAGCTCTCACATG 59.894 60.000 0.00 0.00 0.00 3.21
2571 2645 0.326048 ACCCTGCCTAGCTCTCACAT 60.326 55.000 0.00 0.00 0.00 3.21
2572 2646 1.079256 ACCCTGCCTAGCTCTCACA 59.921 57.895 0.00 0.00 0.00 3.58
2573 2647 1.519719 CACCCTGCCTAGCTCTCAC 59.480 63.158 0.00 0.00 0.00 3.51
2574 2648 2.362369 GCACCCTGCCTAGCTCTCA 61.362 63.158 0.00 0.00 37.42 3.27
2575 2649 2.503546 GCACCCTGCCTAGCTCTC 59.496 66.667 0.00 0.00 37.42 3.20
2588 2662 3.688159 CAGCTTTGGGCAGGCACC 61.688 66.667 0.00 0.00 44.79 5.01
2589 2663 3.688159 CCAGCTTTGGGCAGGCAC 61.688 66.667 0.00 0.00 40.62 5.01
2590 2664 3.873679 CTCCAGCTTTGGGCAGGCA 62.874 63.158 0.00 0.00 45.70 4.75
2591 2665 3.066814 CTCCAGCTTTGGGCAGGC 61.067 66.667 0.00 0.00 45.70 4.85
2593 2667 1.475682 GATTTCTCCAGCTTTGGGCAG 59.524 52.381 0.00 0.00 44.79 4.85
2594 2668 1.076024 AGATTTCTCCAGCTTTGGGCA 59.924 47.619 0.00 0.00 44.79 5.36
2595 2669 1.747924 GAGATTTCTCCAGCTTTGGGC 59.252 52.381 0.00 0.00 37.02 5.36
2596 2670 3.015327 CTGAGATTTCTCCAGCTTTGGG 58.985 50.000 5.17 0.00 42.20 4.12
2597 2671 3.015327 CCTGAGATTTCTCCAGCTTTGG 58.985 50.000 5.17 0.00 42.20 3.28
2598 2672 3.683802 ACCTGAGATTTCTCCAGCTTTG 58.316 45.455 5.17 0.00 42.20 2.77
2599 2673 5.505181 TTACCTGAGATTTCTCCAGCTTT 57.495 39.130 5.17 0.00 42.20 3.51
2600 2674 5.249420 GTTTACCTGAGATTTCTCCAGCTT 58.751 41.667 5.17 0.00 42.20 3.74
2601 2675 4.323868 GGTTTACCTGAGATTTCTCCAGCT 60.324 45.833 5.17 0.00 42.20 4.24
2602 2676 3.942115 GGTTTACCTGAGATTTCTCCAGC 59.058 47.826 5.17 0.00 42.20 4.85
2603 2677 5.428184 AGGTTTACCTGAGATTTCTCCAG 57.572 43.478 0.00 3.38 46.55 3.86
2627 2701 7.230747 TCTCTCTCTCTCTCTCTCAAGAAAAA 58.769 38.462 0.00 0.00 0.00 1.94
2628 2702 6.778821 TCTCTCTCTCTCTCTCTCAAGAAAA 58.221 40.000 0.00 0.00 0.00 2.29
2629 2703 6.213397 TCTCTCTCTCTCTCTCTCTCAAGAAA 59.787 42.308 0.00 0.00 0.00 2.52
2630 2704 5.721480 TCTCTCTCTCTCTCTCTCTCAAGAA 59.279 44.000 0.00 0.00 0.00 2.52
2631 2705 5.272402 TCTCTCTCTCTCTCTCTCTCAAGA 58.728 45.833 0.00 0.00 0.00 3.02
2632 2706 5.362143 TCTCTCTCTCTCTCTCTCTCTCAAG 59.638 48.000 0.00 0.00 0.00 3.02
2633 2707 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
2634 2708 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
2635 2709 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2636 2710 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2637 2711 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2638 2712 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2639 2713 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2640 2714 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2641 2715 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2642 2716 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2643 2717 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2644 2718 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2645 2719 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2646 2720 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2647 2721 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2648 2722 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2649 2723 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2650 2724 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2651 2725 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2652 2726 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2653 2727 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2654 2728 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2655 2729 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2656 2730 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2657 2731 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2658 2732 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2659 2733 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2660 2734 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2661 2735 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2662 2736 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2663 2737 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2664 2738 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2665 2739 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2666 2740 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2667 2741 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2668 2742 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2669 2743 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2670 2744 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2671 2745 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2672 2746 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2673 2747 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2674 2748 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2675 2749 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2676 2750 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2677 2751 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2678 2752 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2679 2753 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2680 2754 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2681 2755 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2682 2756 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2683 2757 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2684 2758 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2685 2759 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2686 2760 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2687 2761 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2688 2762 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2689 2763 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2690 2764 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2691 2765 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2692 2766 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2693 2767 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2694 2768 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2695 2769 5.774690 AGATCTCTCTCTCTCTCTCTCTCTC 59.225 48.000 0.00 0.00 0.00 3.20
2696 2770 5.714863 AGATCTCTCTCTCTCTCTCTCTCT 58.285 45.833 0.00 0.00 0.00 3.10
2697 2771 7.531857 TTAGATCTCTCTCTCTCTCTCTCTC 57.468 44.000 0.00 0.00 32.66 3.20
2698 2772 7.537596 CTTAGATCTCTCTCTCTCTCTCTCT 57.462 44.000 0.00 0.00 32.66 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.